BLASTX 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= 20060611S-027234 (1213 letters) Database: RefSeqSP 1040 sequences; 434,620 total letters Searching...done Score E Sequences producing significant alignments: (bits) Value Alignment gi|NP_001004039.1| SLA-DM alpha chain [Sus scrofa] 72 3e-14 Alignment gi|NP_999143.1| beta 2-microglobulin [Sus scrofa] 69 2e-13 Alignment gi|NP_998933.1| swine leukocyte antigen 7 [Sus scrofa] 49 2e-07 >ref|NP_001004039.1| SLA-DM alpha chain [Sus scrofa] Length = 260 Score = 71.6 bits (174), Expect = 3e-14 Identities = 37/106 (34%), Positives = 55/106 (51%) Frame = +1 Query: 385 VPEVTVFPKSPVMLGQPNTLICHVDNIFPPVINITWLKNGHSVTEGFSETSFLSKNDHSL 564 +P VF P+ G+PNTL+C V N+FPP + +TW ++ + EG T + +D S Sbjct: 126 LPIAEVFTLKPLEFGKPNTLVCFVSNLFPPALTVTW-EHHSAPVEGIGPTFVSATDDLSF 184 Query: 565 LKISYLTFLPSDDDFYDCKVEHWGLDKPLLKHWEPEIPAPMSELTE 702 SYL F P+ D + C V H + +W P+ P S+L E Sbjct: 185 QAFSYLNFTPTPSDLFSCVVTHELDGYVAISYWVPQNALP-SDLLE 229 >ref|NP_999143.1| beta 2-microglobulin [Sus scrofa] Length = 118 Score = 68.9 bits (167), Expect = 2e-13 Identities = 37/98 (37%), Positives = 52/98 (53%) Frame = +1 Query: 373 AVNQVPEVTVFPKSPVMLGQPNTLICHVDNIFPPVINITWLKNGHSVTEGFSETSFLSKN 552 AV + P+V V+ + P G+PN L C+V PP I I LKNG + S+ SF Sbjct: 20 AVARPPKVQVYSRHPAENGKPNYLNCYVSGFHPPQIEIDLLKNGEKMNAEQSDLSF--SK 77 Query: 553 DHSLLKISYLTFLPSDDDFYDCKVEHWGLDKPLLKHWE 666 D S + + F P+ D Y C+V+H LDKP + W+ Sbjct: 78 DWSFYLLVHTEFTPNAVDQYSCRVKHVTLDKPKIVKWD 115 >ref|NP_998933.1| swine leukocyte antigen 7 [Sus scrofa] Length = 401 Score = 49.3 bits (116), Expect = 2e-07 Identities = 23/80 (28%), Positives = 36/80 (45%) Frame = +1 Query: 439 TLICHVDNIFPPVINITWLKNGHSVTEGFSETSFLSKNDHSLLKISYLTFLPSDDDFYDC 618 TL C +P I++TW + G ++ D + K + L P ++ Y C Sbjct: 221 TLRCWALGFYPKEISLTWQQEGQDQSQDVEVVETRPSGDGTFRKWAALVVPPGEEQSYTC 280 Query: 619 KVEHWGLDKPLLKHWEPEIP 678 V+H GL +PL W+P P Sbjct: 281 HVQHEGLQEPLTLRWDPPQP 300 Database: RefSeqSP Posted date: Aug 1, 2006 7:14 PM Number of letters in database: 434,620 Number of sequences in database: 1040 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 1,081,334 Number of Sequences: 1040 Number of extensions: 26073 Number of successful extensions: 70 Number of sequences better than 1.0e-05: 3 Number of HSP's better than 0.0 without gapping: 62 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 67 length of database: 434,620 effective HSP length: 79 effective length of database: 352,460 effective search space used: 114197040 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
Search to RefSeqBP
BLASTX 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= 20060611S-027234 (1213 letters) Database: RefSeqBP 33,508 sequences; 16,112,626 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Alignment gi|NP_001013619.2| histocompatibility complex, class II, DQ alp... 246 e-105 Alignment gi|NP_001012693.1| major histocompatibility complex, class II, ... 239 9e-99 Alignment gi|NP_001012699.1| major histocompatibility complex, class II, ... 197 2e-88 Alignment gi|XP_604082.2| PREDICTED: similar to HLA class II histocompati... 167 8e-59 Alignment gi|XP_883292.1| PREDICTED: similar to HLA class II histocompati... 165 4e-58 Alignment gi|NP_001012695.1| major histocompatibility complex, class II, ... 162 9e-54 Alignment gi|NP_001012696.1| major histocompatibility complex, class II, ... 192 6e-49 Alignment gi|NP_776318.1| beta-2-microglobulin [Bos taurus] 69 7e-12 Alignment gi|NP_001029840.2| MHC class II antigen [Bos taurus] 63 5e-10 Alignment gi|NP_001013618.1| major histocompatibility complex, class II, ... 62 7e-10 >ref|NP_001013619.2| histocompatibility complex, class II, DQ alpha, type 1 [Bos taurus] Length = 255 Score = 246 bits (628), Expect(2) = e-105 Identities = 118/157 (75%), Positives = 128/157 (81%) Frame = +1 Query: 346 LIKRSNNTAAVNQVPEVTVFPKSPVMLGQPNTLICHVDNIFPPVINITWLKNGHSVTEGF 525 +I+RSN+TAA N+VPEVTVF KSPVMLGQPNTLICHVDNIFPPVINITWL+NGHSVTEG Sbjct: 99 VIQRSNSTAATNKVPEVTVFSKSPVMLGQPNTLICHVDNIFPPVINITWLRNGHSVTEGV 158 Query: 526 SETSFLSKNDHSLLKISYLTFLPSDDDFYDCKVEHWGLDKPLLKHWEPEIPAPMSELTET 705 SETSFL K+D+S LKI+YLTFLPSDDD YDCKVEHWGLD+PLLKHWEP+IPAPMSELTET Sbjct: 159 SETSFLIKSDYSFLKINYLTFLPSDDDVYDCKVEHWGLDEPLLKHWEPDIPAPMSELTET 218 Query: 706 XXXXXXXXXXXXXXXXXXXXXXQGLRSGGPSRHQGSL 816 QGLRSGGPSRHQG L Sbjct: 219 VVCALGLTVGLVGIMVGTILIIQGLRSGGPSRHQGPL 255 Score = 155 bits (391), Expect(2) = e-105 Identities = 70/96 (72%), Positives = 82/96 (85%) Frame = +2 Query: 56 MVPGRVLMWGALALTAVMSACGGEDIAADHVASYGLNVYQSYGPSGYYTHEFDGDEEFYV 235 MV R L+ GALALT +MS G EDI ADH+ +YG+++Y +YGPSGYYTHEFDGDEEFYV Sbjct: 1 MVLNRALILGALALTTMMSPSGSEDIVADHIGTYGISIYHTYGPSGYYTHEFDGDEEFYV 60 Query: 236 DLGKKETVWQLPLFSKFRSFDPQGALRNIATAKHNL 343 DL K+ETVW+LP+FSKF +FDPQGALRNIAT KHNL Sbjct: 61 DLEKRETVWRLPVFSKFATFDPQGALRNIATTKHNL 96 >ref|NP_001012693.1| major histocompatibility complex, class II, DQ alpha [Bos taurus] Length = 255 Score = 239 bits (611), Expect(2) = 9e-99 Identities = 116/157 (73%), Positives = 123/157 (78%) Frame = +1 Query: 346 LIKRSNNTAAVNQVPEVTVFPKSPVMLGQPNTLICHVDNIFPPVINITWLKNGHSVTEGF 525 L K SN+TAA N+VPEVTVF KSPVMLGQPNTLICHVDNIFPPVINITWL+NGHSVTEG Sbjct: 99 LTKFSNSTAATNKVPEVTVFSKSPVMLGQPNTLICHVDNIFPPVINITWLRNGHSVTEGV 158 Query: 526 SETSFLSKNDHSLLKISYLTFLPSDDDFYDCKVEHWGLDKPLLKHWEPEIPAPMSELTET 705 SETSFL ++D+S LKI YL FLPSDDD YDCKVEHWGLD+PLLKHWEPEIPAPMSELTET Sbjct: 159 SETSFLIRSDYSFLKIKYLAFLPSDDDIYDCKVEHWGLDEPLLKHWEPEIPAPMSELTET 218 Query: 706 XXXXXXXXXXXXXXXXXXXXXXQGLRSGGPSRHQGSL 816 QGLRSG PSRHQG L Sbjct: 219 VVCTLGLTMGLVGITVGTIFIIQGLRSGDPSRHQGPL 255 Score = 140 bits (352), Expect(2) = 9e-99 Identities = 67/93 (72%), Positives = 74/93 (79%) Frame = +2 Query: 56 MVPGRVLMWGALALTAVMSACGGEDIAADHVASYGLNVYQSYGPSGYYTHEFDGDEEFYV 235 MV R L+ G LALT +MS GGEDI ADHV YG+++YQSYGPSG YTHEFDGDE+FYV Sbjct: 1 MVLNRALILGTLALTTMMSPSGGEDIVADHVGIYGISIYQSYGPSGQYTHEFDGDEQFYV 60 Query: 236 DLGKKETVWQLPLFSKFRSFDPQGALRNIATAK 334 DL KKET WQLPLFS+ SFDPQ ALRNIA K Sbjct: 61 DLEKKETAWQLPLFSRMLSFDPQLALRNIAIMK 93 >ref|NP_001012699.1| major histocompatibility complex, class II, DQ alpha 1 [Bos taurus] Length = 268 Score = 197 bits (500), Expect(2) = 2e-88 Identities = 90/106 (84%), Positives = 96/106 (90%) Frame = +1 Query: 346 LIKRSNNTAAVNQVPEVTVFPKSPVMLGQPNTLICHVDNIFPPVINITWLKNGHSVTEGF 525 L KRSN T +N+VPEVTVF KSPVMLGQPNTLICHVDNIFPPVINITWLKNGH+VTEG Sbjct: 99 LTKRSNFTPVINEVPEVTVFSKSPVMLGQPNTLICHVDNIFPPVINITWLKNGHAVTEGV 158 Query: 526 SETSFLSKNDHSLLKISYLTFLPSDDDFYDCKVEHWGLDKPLLKHW 663 SETSFL K+DHS LKI YLTFLPSD+D YDCKVEHWGLD+PLLKHW Sbjct: 159 SETSFLPKDDHSFLKIGYLTFLPSDNDIYDCKVEHWGLDEPLLKHW 204 Score = 148 bits (373), Expect(2) = 2e-88 Identities = 70/97 (72%), Positives = 79/97 (81%) Frame = +2 Query: 56 MVPGRVLMWGALALTAVMSACGGEDIAADHVASYGLNVYQSYGPSGYYTHEFDGDEEFYV 235 MV R L+ GALALT +MS+ GGEDI ADHV SYG +YQS+GPSG YT EFDGDE FYV Sbjct: 1 MVLNRALILGALALTTMMSSSGGEDIVADHVGSYGTEIYQSHGPSGQYTQEFDGDEMFYV 60 Query: 236 DLGKKETVWQLPLFSKFRSFDPQGALRNIATAKHNLN 346 DLGKKETVW+LP+FS+F FDPQ AL IATAKHNL+ Sbjct: 61 DLGKKETVWRLPMFSQFAGFDPQAALSEIATAKHNLD 97 >ref|XP_604082.2| PREDICTED: similar to HLA class II histocompatibility antigen, DO alpha chain precursor (MHC class II antigen DOA) (MHC DZ alpha) (MHC DN-alpha) isoform 1 [Bos taurus] Length = 250 Score = 167 bits (424), Expect(2) = 8e-59 Identities = 74/121 (61%), Positives = 91/121 (75%) Frame = +1 Query: 343 ELIKRSNNTAAVNQVPEVTVFPKSPVMLGQPNTLICHVDNIFPPVINITWLKNGHSVTEG 522 +L+KRSN T A N P V V PKS V LG+PN LIC VD IFPPVINITWL+NGH VT+G Sbjct: 98 DLVKRSNGTRAPNVSPRVAVLPKSHVQLGEPNVLICIVDKIFPPVINITWLRNGHPVTQG 157 Query: 523 FSETSFLSKNDHSLLKISYLTFLPSDDDFYDCKVEHWGLDKPLLKHWEPEIPAPMSELTE 702 +++SF ++ DH K YLTF+P DDFYDCKVEHWGLD+PL +HWEP++P + + T Sbjct: 158 VTQSSFYAQPDHLFRKFHYLTFVPLVDDFYDCKVEHWGLDQPLFQHWEPQVPTALPDTTG 217 Query: 703 T 705 T Sbjct: 218 T 218 Score = 79.0 bits (193), Expect(2) = 8e-59 Identities = 41/90 (45%), Positives = 55/90 (61%) Frame = +2 Query: 74 LMWGALALTAVMSACGGEDIAADHVASYGLNVYQSYGPSGYYTHEFDGDEEFYVDLGKKE 253 L+ G L ++S I ADH+ SYG YQSY +G +T++FDG++ F VDL K+E Sbjct: 7 LVLGLHTLMTLLSLQEVGAIKADHMGSYGPAFYQSYDGAGQFTYDFDGEQLFSVDLKKRE 66 Query: 254 TVWQLPLFSKFRSFDPQGALRNIATAKHNL 343 VW+LP F F FDPQ L +IA K +L Sbjct: 67 AVWRLPEFGNFAYFDPQSGLVSIAMIKAHL 96 >ref|XP_883292.1| PREDICTED: similar to HLA class II histocompatibility antigen, DO alpha chain precursor (MHC class II antigen DOA) (MHC DZ alpha) (MHC DN-alpha) isoform 2 [Bos taurus] Length = 251 Score = 165 bits (418), Expect(2) = 4e-58 Identities = 74/122 (60%), Positives = 92/122 (75%), Gaps = 1/122 (0%) Frame = +1 Query: 343 ELIKRSNNTAAVN-QVPEVTVFPKSPVMLGQPNTLICHVDNIFPPVINITWLKNGHSVTE 519 +L+KRSN T A N P+V V PKS V LG+PN LIC VD IFPPVINITWL+NGH VT+ Sbjct: 98 DLVKRSNGTRAPNGSTPQVAVLPKSHVQLGEPNVLICIVDKIFPPVINITWLRNGHPVTQ 157 Query: 520 GFSETSFLSKNDHSLLKISYLTFLPSDDDFYDCKVEHWGLDKPLLKHWEPEIPAPMSELT 699 G +++SF ++ DH K YLTF+P DDFYDCKVEHWGLD+PL +HWEP++P + + T Sbjct: 158 GVTQSSFYAQPDHLFRKFHYLTFVPLVDDFYDCKVEHWGLDQPLFQHWEPQVPTALPDTT 217 Query: 700 ET 705 T Sbjct: 218 GT 219 Score = 79.0 bits (193), Expect(2) = 4e-58 Identities = 41/90 (45%), Positives = 55/90 (61%) Frame = +2 Query: 74 LMWGALALTAVMSACGGEDIAADHVASYGLNVYQSYGPSGYYTHEFDGDEEFYVDLGKKE 253 L+ G L ++S I ADH+ SYG YQSY +G +T++FDG++ F VDL K+E Sbjct: 7 LVLGLHTLMTLLSLQEVGAIKADHMGSYGPAFYQSYDGAGQFTYDFDGEQLFSVDLKKRE 66 Query: 254 TVWQLPLFSKFRSFDPQGALRNIATAKHNL 343 VW+LP F F FDPQ L +IA K +L Sbjct: 67 AVWRLPEFGNFAYFDPQSGLVSIAMIKAHL 96 >ref|NP_001012695.1| major histocompatibility complex, class II, DR alpha [Bos taurus] Length = 253 Score = 162 bits (409), Expect(2) = 9e-54 Identities = 77/157 (49%), Positives = 95/157 (60%) Frame = +1 Query: 346 LIKRSNNTAAVNQVPEVTVFPKSPVMLGQPNTLICHVDNIFPPVINITWLKNGHSVTEGF 525 +IKRSNNT N PEVT+ P PV LG+PNTLIC +D PPVI++TWL+NG VT+G Sbjct: 97 MIKRSNNTPNTNVPPEVTLLPNKPVELGEPNTLICFIDKFSPPVISVTWLRNGKPVTDGV 156 Query: 526 SETSFLSKNDHSLLKISYLTFLPSDDDFYDCKVEHWGLDKPLLKHWEPEIPAPMSELTET 705 S+T FL +NDH K YL FLP+ +D YDCKVEH GL++PLLKHWE E PAP+ E TE Sbjct: 157 SQTVFLPRNDHLFRKFHYLPFLPTTEDVYDCKVEHLGLNEPLLKHWEYEAPAPLPETTEN 216 Query: 706 XXXXXXXXXXXXXXXXXXXXXXQGLRSGGPSRHQGSL 816 +G+R +G L Sbjct: 217 AVCALGLIVALVGIIAGTIFIIKGVRKANTVERRGPL 253 Score = 67.8 bits (164), Expect(2) = 9e-54 Identities = 31/53 (58%), Positives = 39/53 (73%) Frame = +2 Query: 188 SGYYTHEFDGDEEFYVDLGKKETVWQLPLFSKFRSFDPQGALRNIATAKHNLN 346 S + +FDGDE F+VD+GKKETVW+LP F F SF+ QGAL N+A K NL+ Sbjct: 43 SAEFMFDFDGDEIFHVDMGKKETVWRLPEFGHFASFEAQGALANMAVMKANLD 95 >ref|NP_001012696.1| major histocompatibility complex, class II, DY alpha [Bos taurus] Length = 253 Score = 192 bits (487), Expect = 6e-49 Identities = 86/120 (71%), Positives = 101/120 (84%) Frame = +1 Query: 346 LIKRSNNTAAVNQVPEVTVFPKSPVMLGQPNTLICHVDNIFPPVINITWLKNGHSVTEGF 525 LIK S+ T A +++PEV VFPKS V+LG PNTLIC VDNIFPPVINITW NGH V EG Sbjct: 97 LIKNSSFTPATSEIPEVAVFPKSSVVLGIPNTLICQVDNIFPPVINITWFYNGHFVAEGI 156 Query: 526 SETSFLSKNDHSLLKISYLTFLPSDDDFYDCKVEHWGLDKPLLKHWEPEIPAPMSELTET 705 +ET+F K+DHS LK SYLTFLP+++DFYDC+VEHWGL++PL+KHWEPEIP P SELTET Sbjct: 157 AETTFYPKSDHSFLKFSYLTFLPTNEDFYDCRVEHWGLEEPLVKHWEPEIPTPTSELTET 216 Score = 121 bits (304), Expect = 1e-27 Identities = 63/106 (59%), Positives = 73/106 (68%), Gaps = 2/106 (1%) Frame = +2 Query: 68 RVLMWGALALTAVMSACGGEDIAADHVASYGLNVYQSYGPSGYYTHEFDGDEEFYVDLGK 247 + L+ AL L +MS GGEDI ADHV +YG NVYQ+YG SG +T EFDGDE FYVDLGK Sbjct: 3 KALILRALTLATMMSPYGGEDIVADHVGTYGTNVYQTYGASGQFTFEFDGDELFYVDLGK 62 Query: 248 KETVWQLPLFSKFRSFDPQGALRNIATAKHNLN*L--NVPTTPRLS 379 KETVW+LP FS F+ Q ALRNI +K NL+ L N TP S Sbjct: 63 KETVWRLPEFSNITKFEVQSALRNIVMSKRNLDILIKNSSFTPATS 108 >ref|NP_776318.1| beta-2-microglobulin [Bos taurus] Length = 118 Score = 68.9 bits (167), Expect = 7e-12 Identities = 34/101 (33%), Positives = 55/101 (54%) Frame = +1 Query: 373 AVNQVPEVTVFPKSPVMLGQPNTLICHVDNIFPPVINITWLKNGHSVTEGFSETSFLSKN 552 A+ + P++ V+ + P G+PN L C+V PP I I LKNG + S+ SF Sbjct: 20 AIQRPPKIQVYSRHPPEDGKPNYLNCYVYGFHPPQIEIDLLKNGEKIKSEQSDLSF--SK 77 Query: 553 DHSLLKISYLTFLPSDDDFYDCKVEHWGLDKPLLKHWEPEI 675 D S +S+ F P+ D Y C+V+H L++P + W+ ++ Sbjct: 78 DWSFYLLSHAEFTPNSKDQYSCRVKHVTLEQPRIVKWDRDL 118 >ref|NP_001029840.2| MHC class II antigen [Bos taurus] Length = 261 Score = 62.8 bits (151), Expect = 5e-10 Identities = 29/103 (28%), Positives = 44/103 (42%) Frame = +1 Query: 388 PEVTVFPKSPVMLGQPNTLICHVDNIFPPVINITWLKNGHSVTEGFSETSFLSKNDHSLL 567 P VT+ P L N L+C V + +P I + W +N T G T + D + Sbjct: 129 PTVTISPSRTEALNHHNLLVCSVTDFYPSQIKVRWFRNDREETAGVVSTPLIRNGDWTFQ 188 Query: 568 KISYLTFLPSDDDFYDCKVEHWGLDKPLLKHWEPEIPAPMSEL 696 + L P D Y C VEH L P++ W + + S++ Sbjct: 189 ILVMLEMTPQRGDVYTCHVEHPSLQSPIMVEWRAQSESAQSKM 231 >ref|NP_001013618.1| major histocompatibility complex, class II, DO beta [Bos taurus] Length = 271 Score = 62.4 bits (150), Expect = 7e-10 Identities = 30/95 (31%), Positives = 42/95 (44%) Frame = +1 Query: 388 PEVTVFPKSPVMLGQPNTLICHVDNIFPPVINITWLKNGHSVTEGFSETSFLSKNDHSLL 567 PEVTV+P+ L N L+C V +P I +TW +NG EG T + D + Sbjct: 123 PEVTVYPEKTPALQHRNLLLCLVTGFYPGDIKVTWFRNGQEQREGIMSTGLIRNGDWTFQ 182 Query: 568 KISYLTFLPSDDDFYDCKVEHWGLDKPLLKHWEPE 672 L P + Y C V+H L P+ W + Sbjct: 183 MTVMLAMTPELGEVYTCLVDHPSLLSPVSVEWRAQ 217 Database: RefSeqBP Posted date: Aug 1, 2006 7:14 PM Number of letters in database: 16,112,626 Number of sequences in database: 33,508 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 40,468,899 Number of Sequences: 33508 Number of extensions: 1007576 Number of successful extensions: 2857 Number of sequences better than 1.0e-05: 10 Number of HSP's better than 0.0 without gapping: 2591 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2843 length of database: 16,112,626 effective HSP length: 104 effective length of database: 12,627,794 effective search space used: 3775710406 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
Search to RefSeqHP
BLASTX 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= 20060611S-027234 (1213 letters) Database: RefSeqHP 39,411 sequences; 17,774,539 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Alignment gi|XP_949974.1| PREDICTED: similar to HLA class II histocompati... 236 e-104 Alignment gi|XP_949973.1| PREDICTED: similar to HLA class II histocompati... 236 e-104 Alignment gi|XP_949971.1| PREDICTED: similar to HLA class II histocompati... 236 e-104 Alignment gi|XP_945969.1| PREDICTED: similar to HLA class II histocompati... 236 e-104 Alignment gi|NP_002113.2| major histocompatibility complex, class II, DQ ... 230 1e-99 Alignment gi|XP_941306.1| PREDICTED: similar to HLA class II histocompati... 229 3e-99 Alignment gi|XP_941305.1| PREDICTED: similar to HLA class II histocompati... 229 3e-99 Alignment gi|XP_941304.1| PREDICTED: similar to HLA class II histocompati... 229 3e-99 Alignment gi|XP_941255.1| PREDICTED: similar to HLA class II histocompati... 229 3e-99 Alignment gi|XP_941221.1| PREDICTED: similar to HLA class II histocompati... 229 3e-99 >ref|XP_949974.1| PREDICTED: similar to HLA class II histocompatibility antigen, DQ(1) alpha chain precursor (DC-4 alpha chain) isoform 10 [Homo sapiens] Length = 255 Score = 236 bits (603), Expect(2) = e-104 Identities = 115/157 (73%), Positives = 123/157 (78%) Frame = +1 Query: 346 LIKRSNNTAAVNQVPEVTVFPKSPVMLGQPNTLICHVDNIFPPVINITWLKNGHSVTEGF 525 +IKRSN+TAA N+VPEVTVF KSPV LGQPNTLIC VDNIFPPV+NITWL NGHSVTEG Sbjct: 99 VIKRSNSTAATNEVPEVTVFSKSPVTLGQPNTLICLVDNIFPPVVNITWLSNGHSVTEGV 158 Query: 526 SETSFLSKNDHSLLKISYLTFLPSDDDFYDCKVEHWGLDKPLLKHWEPEIPAPMSELTET 705 SETSFLSK+DHS KISYLTFLPSDD+ YDCKVEHWGLD+PLLKHWEPEIPAPMSELTET Sbjct: 159 SETSFLSKSDHSFFKISYLTFLPSDDEIYDCKVEHWGLDEPLLKHWEPEIPAPMSELTET 218 Query: 706 XXXXXXXXXXXXXXXXXXXXXXQGLRSGGPSRHQGSL 816 +GLRS G SRHQG L Sbjct: 219 VVCALGLSVGLVGIVVGTVLIIRGLRSVGASRHQGPL 255 Score = 160 bits (404), Expect(2) = e-104 Identities = 75/97 (77%), Positives = 82/97 (84%) Frame = +2 Query: 56 MVPGRVLMWGALALTAVMSACGGEDIAADHVASYGLNVYQSYGPSGYYTHEFDGDEEFYV 235 M+ + LM GALALT VMS CGGEDI ADHVASYG+N+YQSYGPSG Y+HEFDGDEEFYV Sbjct: 1 MILNKALMLGALALTTVMSPCGGEDIVADHVASYGVNLYQSYGPSGQYSHEFDGDEEFYV 60 Query: 236 DLGKKETVWQLPLFSKFRSFDPQGALRNIATAKHNLN 346 DL +KETVWQLPLF +FR FDPQ AL NIA KHNLN Sbjct: 61 DLERKETVWQLPLFRRFRRFDPQFALTNIAVLKHNLN 97 >ref|XP_949973.1| PREDICTED: similar to HLA class II histocompatibility antigen, DQ(1) alpha chain precursor (DC-4 alpha chain) isoform 9 [Homo sapiens] Length = 255 Score = 236 bits (603), Expect(2) = e-104 Identities = 115/157 (73%), Positives = 123/157 (78%) Frame = +1 Query: 346 LIKRSNNTAAVNQVPEVTVFPKSPVMLGQPNTLICHVDNIFPPVINITWLKNGHSVTEGF 525 +IKRSN+TAA N+VPEVTVF KSPV LGQPNTLIC VDNIFPPV+NITWL NGHSVTEG Sbjct: 99 VIKRSNSTAATNEVPEVTVFSKSPVTLGQPNTLICLVDNIFPPVVNITWLSNGHSVTEGV 158 Query: 526 SETSFLSKNDHSLLKISYLTFLPSDDDFYDCKVEHWGLDKPLLKHWEPEIPAPMSELTET 705 SETSFLSK+DHS KISYLTFLPSDD+ YDCKVEHWGLD+PLLKHWEPEIPAPMSELTET Sbjct: 159 SETSFLSKSDHSFFKISYLTFLPSDDEIYDCKVEHWGLDEPLLKHWEPEIPAPMSELTET 218 Query: 706 XXXXXXXXXXXXXXXXXXXXXXQGLRSGGPSRHQGSL 816 +GLRS G SRHQG L Sbjct: 219 VVCALGLSVGLVGIVVGTVLIIRGLRSVGASRHQGPL 255 Score = 160 bits (404), Expect(2) = e-104 Identities = 75/97 (77%), Positives = 82/97 (84%) Frame = +2 Query: 56 MVPGRVLMWGALALTAVMSACGGEDIAADHVASYGLNVYQSYGPSGYYTHEFDGDEEFYV 235 M+ + LM GALALT VMS CGGEDI ADHVASYG+N+YQSYGPSG Y+HEFDGDEEFYV Sbjct: 1 MILNKALMLGALALTTVMSPCGGEDIVADHVASYGVNLYQSYGPSGQYSHEFDGDEEFYV 60 Query: 236 DLGKKETVWQLPLFSKFRSFDPQGALRNIATAKHNLN 346 DL +KETVWQLPLF +FR FDPQ AL NIA KHNLN Sbjct: 61 DLERKETVWQLPLFRRFRRFDPQFALTNIAVLKHNLN 97 >ref|XP_949971.1| PREDICTED: similar to HLA class II histocompatibility antigen, DQ(1) alpha chain precursor (DC-4 alpha chain) isoform 8 [Homo sapiens] Length = 255 Score = 236 bits (603), Expect(2) = e-104 Identities = 115/157 (73%), Positives = 123/157 (78%) Frame = +1 Query: 346 LIKRSNNTAAVNQVPEVTVFPKSPVMLGQPNTLICHVDNIFPPVINITWLKNGHSVTEGF 525 +IKRSN+TAA N+VPEVTVF KSPV LGQPNTLIC VDNIFPPV+NITWL NGHSVTEG Sbjct: 99 VIKRSNSTAATNEVPEVTVFSKSPVTLGQPNTLICLVDNIFPPVVNITWLSNGHSVTEGV 158 Query: 526 SETSFLSKNDHSLLKISYLTFLPSDDDFYDCKVEHWGLDKPLLKHWEPEIPAPMSELTET 705 SETSFLSK+DHS KISYLTFLPSDD+ YDCKVEHWGLD+PLLKHWEPEIPAPMSELTET Sbjct: 159 SETSFLSKSDHSFFKISYLTFLPSDDEIYDCKVEHWGLDEPLLKHWEPEIPAPMSELTET 218 Query: 706 XXXXXXXXXXXXXXXXXXXXXXQGLRSGGPSRHQGSL 816 +GLRS G SRHQG L Sbjct: 219 VVCALGLSVGLVGIVVGTVLIIRGLRSVGASRHQGPL 255 Score = 160 bits (404), Expect(2) = e-104 Identities = 75/97 (77%), Positives = 82/97 (84%) Frame = +2 Query: 56 MVPGRVLMWGALALTAVMSACGGEDIAADHVASYGLNVYQSYGPSGYYTHEFDGDEEFYV 235 M+ + LM GALALT VMS CGGEDI ADHVASYG+N+YQSYGPSG Y+HEFDGDEEFYV Sbjct: 1 MILNKALMLGALALTTVMSPCGGEDIVADHVASYGVNLYQSYGPSGQYSHEFDGDEEFYV 60 Query: 236 DLGKKETVWQLPLFSKFRSFDPQGALRNIATAKHNLN 346 DL +KETVWQLPLF +FR FDPQ AL NIA KHNLN Sbjct: 61 DLERKETVWQLPLFRRFRRFDPQFALTNIAVLKHNLN 97 >ref|XP_945969.1| PREDICTED: similar to HLA class II histocompatibility antigen, DQ(1) alpha chain precursor (DC-4 alpha chain) isoform 1 [Homo sapiens] Length = 255 Score = 236 bits (603), Expect(2) = e-104 Identities = 115/157 (73%), Positives = 123/157 (78%) Frame = +1 Query: 346 LIKRSNNTAAVNQVPEVTVFPKSPVMLGQPNTLICHVDNIFPPVINITWLKNGHSVTEGF 525 +IKRSN+TAA N+VPEVTVF KSPV LGQPNTLIC VDNIFPPV+NITWL NGHSVTEG Sbjct: 99 VIKRSNSTAATNEVPEVTVFSKSPVTLGQPNTLICLVDNIFPPVVNITWLSNGHSVTEGV 158 Query: 526 SETSFLSKNDHSLLKISYLTFLPSDDDFYDCKVEHWGLDKPLLKHWEPEIPAPMSELTET 705 SETSFLSK+DHS KISYLTFLPSDD+ YDCKVEHWGLD+PLLKHWEPEIPAPMSELTET Sbjct: 159 SETSFLSKSDHSFFKISYLTFLPSDDEIYDCKVEHWGLDEPLLKHWEPEIPAPMSELTET 218 Query: 706 XXXXXXXXXXXXXXXXXXXXXXQGLRSGGPSRHQGSL 816 +GLRS G SRHQG L Sbjct: 219 VVCALGLSVGLVGIVVGTVLIIRGLRSVGASRHQGPL 255 Score = 160 bits (404), Expect(2) = e-104 Identities = 75/97 (77%), Positives = 82/97 (84%) Frame = +2 Query: 56 MVPGRVLMWGALALTAVMSACGGEDIAADHVASYGLNVYQSYGPSGYYTHEFDGDEEFYV 235 M+ + LM GALALT VMS CGGEDI ADHVASYG+N+YQSYGPSG Y+HEFDGDEEFYV Sbjct: 1 MILNKALMLGALALTTVMSPCGGEDIVADHVASYGVNLYQSYGPSGQYSHEFDGDEEFYV 60 Query: 236 DLGKKETVWQLPLFSKFRSFDPQGALRNIATAKHNLN 346 DL +KETVWQLPLF +FR FDPQ AL NIA KHNLN Sbjct: 61 DLERKETVWQLPLFRRFRRFDPQFALTNIAVLKHNLN 97 >ref|NP_002113.2| major histocompatibility complex, class II, DQ alpha 1 precursor [Homo sapiens] Length = 255 Score = 230 bits (586), Expect(2) = 1e-99 Identities = 113/157 (71%), Positives = 120/157 (76%) Frame = +1 Query: 346 LIKRSNNTAAVNQVPEVTVFPKSPVMLGQPNTLICHVDNIFPPVINITWLKNGHSVTEGF 525 +IKR N+TAA N+VPEVTVF KSPV LGQPNTLIC VDNIFPPV+NITWL NG SVTEG Sbjct: 99 MIKRYNSTAATNEVPEVTVFSKSPVTLGQPNTLICLVDNIFPPVVNITWLSNGQSVTEGV 158 Query: 526 SETSFLSKNDHSLLKISYLTFLPSDDDFYDCKVEHWGLDKPLLKHWEPEIPAPMSELTET 705 SETSFLSK+DHS KISYLTFLPS D+ YDCKVEHWGLD+PLLKHWEPEIPAPMSELTET Sbjct: 159 SETSFLSKSDHSFFKISYLTFLPSADEIYDCKVEHWGLDQPLLKHWEPEIPAPMSELTET 218 Query: 706 XXXXXXXXXXXXXXXXXXXXXXQGLRSGGPSRHQGSL 816 QGLRS G SRHQG L Sbjct: 219 VVCALGLSVGLMGIVVGTVFIIQGLRSVGASRHQGPL 255 Score = 152 bits (385), Expect(2) = 1e-99 Identities = 71/97 (73%), Positives = 80/97 (82%) Frame = +2 Query: 56 MVPGRVLMWGALALTAVMSACGGEDIAADHVASYGLNVYQSYGPSGYYTHEFDGDEEFYV 235 M+ + L+ GALALT VMS CGGEDI ADHVAS G+N+YQ YGPSG YTHEFDGDE+FYV Sbjct: 1 MILNKALLLGALALTTVMSPCGGEDIVADHVASCGVNLYQFYGPSGQYTHEFDGDEQFYV 60 Query: 236 DLGKKETVWQLPLFSKFRSFDPQGALRNIATAKHNLN 346 DL +KET W+ P FSKF FDPQGALRN+A AKHNLN Sbjct: 61 DLERKETAWRWPEFSKFGGFDPQGALRNMAVAKHNLN 97 >ref|XP_941306.1| PREDICTED: similar to HLA class II histocompatibility antigen, DQ(3) alpha chain precursor (DC-alpha) (HLA-DCA) (HLA-DQA1*05011) (HLA-DQA1*0502) isoform 10 [Homo sapiens] Length = 254 Score = 229 bits (584), Expect(2) = 3e-99 Identities = 113/157 (71%), Positives = 120/157 (76%) Frame = +1 Query: 346 LIKRSNNTAAVNQVPEVTVFPKSPVMLGQPNTLICHVDNIFPPVINITWLKNGHSVTEGF 525 LIKRSN+TAA N+VPEVTVF KSPV LGQPN LIC VDNIFPPV+NITWL NGHSVTEG Sbjct: 98 LIKRSNSTAATNEVPEVTVFSKSPVTLGQPNILICLVDNIFPPVVNITWLSNGHSVTEGV 157 Query: 526 SETSFLSKNDHSLLKISYLTFLPSDDDFYDCKVEHWGLDKPLLKHWEPEIPAPMSELTET 705 SETSFLSK+DHS KISYLT LPS ++ YDCKVEHWGLDKPLLKHWEPEIPAPMSELTET Sbjct: 158 SETSFLSKSDHSFFKISYLTLLPSAEESYDCKVEHWGLDKPLLKHWEPEIPAPMSELTET 217 Query: 706 XXXXXXXXXXXXXXXXXXXXXXQGLRSGGPSRHQGSL 816 +GLRS G SRHQG L Sbjct: 218 VVCALGLSVGLVGIVVGTVFIIRGLRSVGASRHQGPL 254 Score = 152 bits (384), Expect(2) = 3e-99 Identities = 73/97 (75%), Positives = 81/97 (83%) Frame = +2 Query: 56 MVPGRVLMWGALALTAVMSACGGEDIAADHVASYGLNVYQSYGPSGYYTHEFDGDEEFYV 235 M+ + LM GALALT VMS CGGEDI ADHVASYG+N+YQSYGPSG YTHEFDGDE+FYV Sbjct: 1 MILNKALMLGALALTTVMSPCGGEDIVADHVASYGVNLYQSYGPSGQYTHEFDGDEQFYV 60 Query: 236 DLGKKETVWQLPLFSKFRSFDPQGALRNIATAKHNLN 346 DLG+KETVW LP+ +FR FDPQ AL NIA KHNLN Sbjct: 61 DLGRKETVWCLPVLRQFR-FDPQFALTNIAVLKHNLN 96 >ref|XP_941305.1| PREDICTED: similar to HLA class II histocompatibility antigen, DQ(3) alpha chain precursor (DC-alpha) (HLA-DCA) (HLA-DQA1*05011) (HLA-DQA1*0502) isoform 9 [Homo sapiens] Length = 254 Score = 229 bits (584), Expect(2) = 3e-99 Identities = 113/157 (71%), Positives = 120/157 (76%) Frame = +1 Query: 346 LIKRSNNTAAVNQVPEVTVFPKSPVMLGQPNTLICHVDNIFPPVINITWLKNGHSVTEGF 525 LIKRSN+TAA N+VPEVTVF KSPV LGQPN LIC VDNIFPPV+NITWL NGHSVTEG Sbjct: 98 LIKRSNSTAATNEVPEVTVFSKSPVTLGQPNILICLVDNIFPPVVNITWLSNGHSVTEGV 157 Query: 526 SETSFLSKNDHSLLKISYLTFLPSDDDFYDCKVEHWGLDKPLLKHWEPEIPAPMSELTET 705 SETSFLSK+DHS KISYLT LPS ++ YDCKVEHWGLDKPLLKHWEPEIPAPMSELTET Sbjct: 158 SETSFLSKSDHSFFKISYLTLLPSAEESYDCKVEHWGLDKPLLKHWEPEIPAPMSELTET 217 Query: 706 XXXXXXXXXXXXXXXXXXXXXXQGLRSGGPSRHQGSL 816 +GLRS G SRHQG L Sbjct: 218 VVCALGLSVGLVGIVVGTVFIIRGLRSVGASRHQGPL 254 Score = 152 bits (384), Expect(2) = 3e-99 Identities = 73/97 (75%), Positives = 81/97 (83%) Frame = +2 Query: 56 MVPGRVLMWGALALTAVMSACGGEDIAADHVASYGLNVYQSYGPSGYYTHEFDGDEEFYV 235 M+ + LM GALALT VMS CGGEDI ADHVASYG+N+YQSYGPSG YTHEFDGDE+FYV Sbjct: 1 MILNKALMLGALALTTVMSPCGGEDIVADHVASYGVNLYQSYGPSGQYTHEFDGDEQFYV 60 Query: 236 DLGKKETVWQLPLFSKFRSFDPQGALRNIATAKHNLN 346 DLG+KETVW LP+ +FR FDPQ AL NIA KHNLN Sbjct: 61 DLGRKETVWCLPVLRQFR-FDPQFALTNIAVLKHNLN 96 >ref|XP_941304.1| PREDICTED: similar to HLA class II histocompatibility antigen, DQ(3) alpha chain precursor (DC-alpha) (HLA-DCA) (HLA-DQA1*05011) (HLA-DQA1*0502) isoform 8 [Homo sapiens] Length = 254 Score = 229 bits (584), Expect(2) = 3e-99 Identities = 113/157 (71%), Positives = 120/157 (76%) Frame = +1 Query: 346 LIKRSNNTAAVNQVPEVTVFPKSPVMLGQPNTLICHVDNIFPPVINITWLKNGHSVTEGF 525 LIKRSN+TAA N+VPEVTVF KSPV LGQPN LIC VDNIFPPV+NITWL NGHSVTEG Sbjct: 98 LIKRSNSTAATNEVPEVTVFSKSPVTLGQPNILICLVDNIFPPVVNITWLSNGHSVTEGV 157 Query: 526 SETSFLSKNDHSLLKISYLTFLPSDDDFYDCKVEHWGLDKPLLKHWEPEIPAPMSELTET 705 SETSFLSK+DHS KISYLT LPS ++ YDCKVEHWGLDKPLLKHWEPEIPAPMSELTET Sbjct: 158 SETSFLSKSDHSFFKISYLTLLPSAEESYDCKVEHWGLDKPLLKHWEPEIPAPMSELTET 217 Query: 706 XXXXXXXXXXXXXXXXXXXXXXQGLRSGGPSRHQGSL 816 +GLRS G SRHQG L Sbjct: 218 VVCALGLSVGLVGIVVGTVFIIRGLRSVGASRHQGPL 254 Score = 152 bits (384), Expect(2) = 3e-99 Identities = 73/97 (75%), Positives = 81/97 (83%) Frame = +2 Query: 56 MVPGRVLMWGALALTAVMSACGGEDIAADHVASYGLNVYQSYGPSGYYTHEFDGDEEFYV 235 M+ + LM GALALT VMS CGGEDI ADHVASYG+N+YQSYGPSG YTHEFDGDE+FYV Sbjct: 1 MILNKALMLGALALTTVMSPCGGEDIVADHVASYGVNLYQSYGPSGQYTHEFDGDEQFYV 60 Query: 236 DLGKKETVWQLPLFSKFRSFDPQGALRNIATAKHNLN 346 DLG+KETVW LP+ +FR FDPQ AL NIA KHNLN Sbjct: 61 DLGRKETVWCLPVLRQFR-FDPQFALTNIAVLKHNLN 96 >ref|XP_941255.1| PREDICTED: similar to HLA class II histocompatibility antigen, DQ(3) alpha chain precursor (DC-alpha) (HLA-DCA) (HLA-DQA1*05011) (HLA-DQA1*0502) isoform 1 [Homo sapiens] Length = 254 Score = 229 bits (584), Expect(2) = 3e-99 Identities = 113/157 (71%), Positives = 120/157 (76%) Frame = +1 Query: 346 LIKRSNNTAAVNQVPEVTVFPKSPVMLGQPNTLICHVDNIFPPVINITWLKNGHSVTEGF 525 LIKRSN+TAA N+VPEVTVF KSPV LGQPN LIC VDNIFPPV+NITWL NGHSVTEG Sbjct: 98 LIKRSNSTAATNEVPEVTVFSKSPVTLGQPNILICLVDNIFPPVVNITWLSNGHSVTEGV 157 Query: 526 SETSFLSKNDHSLLKISYLTFLPSDDDFYDCKVEHWGLDKPLLKHWEPEIPAPMSELTET 705 SETSFLSK+DHS KISYLT LPS ++ YDCKVEHWGLDKPLLKHWEPEIPAPMSELTET Sbjct: 158 SETSFLSKSDHSFFKISYLTLLPSAEESYDCKVEHWGLDKPLLKHWEPEIPAPMSELTET 217 Query: 706 XXXXXXXXXXXXXXXXXXXXXXQGLRSGGPSRHQGSL 816 +GLRS G SRHQG L Sbjct: 218 VVCALGLSVGLVGIVVGTVFIIRGLRSVGASRHQGPL 254 Score = 152 bits (384), Expect(2) = 3e-99 Identities = 73/97 (75%), Positives = 81/97 (83%) Frame = +2 Query: 56 MVPGRVLMWGALALTAVMSACGGEDIAADHVASYGLNVYQSYGPSGYYTHEFDGDEEFYV 235 M+ + LM GALALT VMS CGGEDI ADHVASYG+N+YQSYGPSG YTHEFDGDE+FYV Sbjct: 1 MILNKALMLGALALTTVMSPCGGEDIVADHVASYGVNLYQSYGPSGQYTHEFDGDEQFYV 60 Query: 236 DLGKKETVWQLPLFSKFRSFDPQGALRNIATAKHNLN 346 DLG+KETVW LP+ +FR FDPQ AL NIA KHNLN Sbjct: 61 DLGRKETVWCLPVLRQFR-FDPQFALTNIAVLKHNLN 96 >ref|XP_941221.1| PREDICTED: similar to HLA class II histocompatibility antigen, DQ(3) alpha chain precursor (DC-alpha) (HLA-DCA) (HLA-DQA1*05011) (HLA-DQA1*0502) isoform 10 [Homo sapiens] Length = 254 Score = 229 bits (584), Expect(2) = 3e-99 Identities = 113/157 (71%), Positives = 120/157 (76%) Frame = +1 Query: 346 LIKRSNNTAAVNQVPEVTVFPKSPVMLGQPNTLICHVDNIFPPVINITWLKNGHSVTEGF 525 LIKRSN+TAA N+VPEVTVF KSPV LGQPN LIC VDNIFPPV+NITWL NGHSVTEG Sbjct: 98 LIKRSNSTAATNEVPEVTVFSKSPVTLGQPNILICLVDNIFPPVVNITWLSNGHSVTEGV 157 Query: 526 SETSFLSKNDHSLLKISYLTFLPSDDDFYDCKVEHWGLDKPLLKHWEPEIPAPMSELTET 705 SETSFLSK+DHS KISYLT LPS ++ YDCKVEHWGLDKPLLKHWEPEIPAPMSELTET Sbjct: 158 SETSFLSKSDHSFFKISYLTLLPSAEESYDCKVEHWGLDKPLLKHWEPEIPAPMSELTET 217 Query: 706 XXXXXXXXXXXXXXXXXXXXXXQGLRSGGPSRHQGSL 816 +GLRS G SRHQG L Sbjct: 218 VVCALGLSVGLVGIVVGTVFIIRGLRSVGASRHQGPL 254 Score = 152 bits (384), Expect(2) = 3e-99 Identities = 73/97 (75%), Positives = 81/97 (83%) Frame = +2 Query: 56 MVPGRVLMWGALALTAVMSACGGEDIAADHVASYGLNVYQSYGPSGYYTHEFDGDEEFYV 235 M+ + LM GALALT VMS CGGEDI ADHVASYG+N+YQSYGPSG YTHEFDGDE+FYV Sbjct: 1 MILNKALMLGALALTTVMSPCGGEDIVADHVASYGVNLYQSYGPSGQYTHEFDGDEQFYV 60 Query: 236 DLGKKETVWQLPLFSKFRSFDPQGALRNIATAKHNLN 346 DLG+KETVW LP+ +FR FDPQ AL NIA KHNLN Sbjct: 61 DLGRKETVWCLPVLRQFR-FDPQFALTNIAVLKHNLN 96 Database: RefSeqHP Posted date: Aug 2, 2006 12:57 AM Number of letters in database: 17,774,539 Number of sequences in database: 39,411 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 45,953,781 Number of Sequences: 39411 Number of extensions: 1177427 Number of successful extensions: 3468 Number of sequences better than 1.0e-05: 10 Number of HSP's better than 0.0 without gapping: 2987 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3421 length of database: 17,774,539 effective HSP length: 104 effective length of database: 13,675,795 effective search space used: 4089062705 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
Search to RefSeqMP
BLASTX 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= 20060611S-027234 (1213 letters) Database: RefSeqMP 45,328 sequences; 21,768,885 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Alignment gi|NP_034508.2| histocompatibility 2, class II antigen A, alpha... 215 3e-87 Alignment gi|NP_032232.1| histocompatibility 2, O region alpha locus [Mus... 160 1e-55 Alignment gi|NP_034511.2| histocompatibility 2, class II antigen E alpha ... 155 2e-50 Alignment gi|NP_034516.2| histocompatibility 2, class II, locus DMa [Mus ... 69 1e-11 Alignment gi|NP_034519.2| histocompatibility 2, O region beta locus [Mus ... 69 1e-11 Alignment gi|NP_033865.2| beta-2-microglobulin [Mus musculus] 65 1e-10 Alignment gi|NP_001029150.1| H-2 class II histocompatibility antigen E-a/... 62 1e-09 Alignment gi|NP_034518.1| histocompatibility 2, class II, locus Mb2 [Mus ... 62 1e-09 Alignment gi|NP_034517.2| histocompatibility 2, class II, locus Mb1 [Mus ... 62 1e-09 Alignment gi|NP_034512.1| histocompatibility 2, class II antigen E beta [... 62 2e-09 >ref|NP_034508.2| histocompatibility 2, class II antigen A, alpha [Mus musculus] Length = 256 Score = 215 bits (547), Expect(2) = 3e-87 Identities = 102/157 (64%), Positives = 114/157 (72%) Frame = +1 Query: 346 LIKRSNNTAAVNQVPEVTVFPKSPVMLGQPNTLICHVDNIFPPVINITWLKNGHSVTEGF 525 L KRSN+T A N+ P+ TVFPKSPV+LGQPNTLIC VDNIFPPVINITWL+N SV +G Sbjct: 100 LTKRSNSTPATNEAPQATVFPKSPVLLGQPNTLICFVDNIFPPVINITWLRNSKSVADGV 159 Query: 526 SETSFLSKNDHSLLKISYLTFLPSDDDFYDCKVEHWGLDKPLLKHWEPEIPAPMSELTET 705 ETSF D+S K+SYLTF+PSDDD YDCKVEHWGL++P+LKHWEPEIPAPMSELTET Sbjct: 160 YETSFFVNRDYSFHKLSYLTFIPSDDDIYDCKVEHWGLEEPVLKHWEPEIPAPMSELTET 219 Query: 706 XXXXXXXXXXXXXXXXXXXXXXQGLRSGGPSRHQGSL 816 QGLRSGG SRH G L Sbjct: 220 VVCALGLSVGLVGIVVGTIFIIQGLRSGGTSRHPGPL 256 Score = 127 bits (318), Expect(2) = 3e-87 Identities = 63/97 (64%), Positives = 71/97 (73%), Gaps = 1/97 (1%) Frame = +2 Query: 56 MVPGRVLMWGALALTAVMSACGGED-IAADHVASYGLNVYQSYGPSGYYTHEFDGDEEFY 232 M R L+ G LALT ++S CGGED I ADHV +YG++VYQS G G YT EFDGDE FY Sbjct: 1 MPRSRALILGVLALTTMLSLCGGEDDIEADHVGTYGISVYQSPGDIGQYTFEFDGDELFY 60 Query: 233 VDLGKKETVWQLPLFSKFRSFDPQGALRNIATAKHNL 343 VDL KKETVW LP F + SFDPQG L+NIA KHNL Sbjct: 61 VDLDKKETVWMLPEFGQLASFDPQGGLQNIAVVKHNL 97 >ref|NP_032232.1| histocompatibility 2, O region alpha locus [Mus musculus] Length = 250 Score = 160 bits (404), Expect(2) = 1e-55 Identities = 71/120 (59%), Positives = 91/120 (75%) Frame = +1 Query: 346 LIKRSNNTAAVNQVPEVTVFPKSPVMLGQPNTLICHVDNIFPPVINITWLKNGHSVTEGF 525 L++RSN T AV+ P VTV PK+ V LG+PN LIC VD+IFPPVIN+TWL+N +T+G Sbjct: 99 LVERSNRTRAVSVPPRVTVLPKTRVELGKPNVLICIVDDIFPPVINVTWLRNSQPITKGV 158 Query: 526 SETSFLSKNDHSLLKISYLTFLPSDDDFYDCKVEHWGLDKPLLKHWEPEIPAPMSELTET 705 ++TSF S+ +H K YLTF+PS +D YDCKVEHWGLD PLL+HWEP++ P + TET Sbjct: 159 AQTSFYSQPNHRFRKFHYLTFVPSAEDVYDCKVEHWGLDTPLLQHWEPQVLTPPPDTTET 218 Score = 76.3 bits (186), Expect(2) = 1e-55 Identities = 39/86 (45%), Positives = 52/86 (60%) Frame = +2 Query: 89 LALTAVMSACGGEDIAADHVASYGLNVYQSYGPSGYYTHEFDGDEEFYVDLGKKETVWQL 268 L + + +S G I ADH+ SYG YQSY SG +THEFDG++ F VDL +E VW+L Sbjct: 12 LTVMSFLSPRGVRAIKADHMGSYGPAFYQSYDASGQFTHEFDGEQIFSVDLKNEEVVWRL 71 Query: 269 PLFSKFRSFDPQGALRNIATAKHNLN 346 P F F D Q L +I+ K +L+ Sbjct: 72 PEFGDFAHSDFQSGLMSISMIKAHLD 97 >ref|NP_034511.2| histocompatibility 2, class II antigen E alpha [Mus musculus] Length = 255 Score = 155 bits (392), Expect(2) = 2e-50 Identities = 70/117 (59%), Positives = 84/117 (71%) Frame = +1 Query: 352 KRSNNTAAVNQVPEVTVFPKSPVMLGQPNTLICHVDNIFPPVINITWLKNGHSVTEGFSE 531 +RSNNT N PEVTV +SPV LG+PN LIC +D PPV+N+TW +NG VTEG SE Sbjct: 100 ERSNNTPDANVAPEVTVLSRSPVNLGEPNILICFIDKFSPPVVNVTWFRNGRPVTEGVSE 159 Query: 532 TSFLSKNDHSLLKISYLTFLPSDDDFYDCKVEHWGLDKPLLKHWEPEIPAPMSELTE 702 T FL ++DH K YLTFLPS DDFYDC+V+HWGL++PL KHWE E + E TE Sbjct: 160 TVFLPRDDHLFRKFHYLTFLPSTDDFYDCEVDHWGLEEPLRKHWEFEEKTLLPETTE 216 Score = 63.5 bits (153), Expect(2) = 2e-50 Identities = 29/52 (55%), Positives = 38/52 (73%) Frame = +2 Query: 191 GYYTHEFDGDEEFYVDLGKKETVWQLPLFSKFRSFDPQGALRNIATAKHNLN 346 G + +FDGDE F+VD+ K ET+W+L F+KF SF+ QGAL NIA K NL+ Sbjct: 45 GEFMFDFDGDEIFHVDIEKSETIWRLEEFAKFASFEAQGALANIAVDKANLD 96 >ref|NP_034516.2| histocompatibility 2, class II, locus DMa [Mus musculus] Length = 261 Score = 68.9 bits (167), Expect = 1e-11 Identities = 37/106 (34%), Positives = 53/106 (50%) Frame = +1 Query: 385 VPEVTVFPKSPVMLGQPNTLICHVDNIFPPVINITWLKNGHSVTEGFSETSFLSKNDHSL 564 +P VF P+ G+PNTL+C + N+FPP + + W + V EG S TS + + + Sbjct: 126 LPVAEVFTLKPLEFGKPNTLVCFISNLFPPTLTVNWQLHSAPV-EGASPTSISAVDGLTF 184 Query: 565 LKISYLTFLPSDDDFYDCKVEHWGLDKPLLKHWEPEIPAPMSELTE 702 SYL F P D Y C V H + +W P+ P S+L E Sbjct: 185 QAFSYLNFTPEPFDLYSCTVTHEIDRYTAIAYWVPQNALP-SDLLE 229 >ref|NP_034519.2| histocompatibility 2, O region beta locus [Mus musculus] Length = 271 Score = 68.6 bits (166), Expect = 1e-11 Identities = 34/99 (34%), Positives = 47/99 (47%) Frame = +1 Query: 367 TAAVNQVPEVTVFPKSPVMLGQPNTLICHVDNIFPPVINITWLKNGHSVTEGFSETSFLS 546 T N PEVTV+P+ +L Q N L+C V +P I++ W +NG G T + Sbjct: 116 TVERNVPPEVTVYPERTPLLQQHNLLLCSVTGFYPGDISVKWFRNGQEERSGVMSTGLVR 175 Query: 547 KNDHSLLKISYLTFLPSDDDFYDCKVEHWGLDKPLLKHW 663 D + L +P D Y C VEH GL +P+ W Sbjct: 176 NGDWTFQTTVMLEMIPELGDIYSCLVEHPGLLRPVSVAW 214 >ref|NP_033865.2| beta-2-microglobulin [Mus musculus] Length = 119 Score = 65.1 bits (157), Expect = 1e-10 Identities = 32/102 (31%), Positives = 56/102 (54%), Gaps = 1/102 (0%) Frame = +1 Query: 373 AVNQVPEVTVFPKSPVMLGQPNTLICHVDNIFPPVINITWLKNGHSVTE-GFSETSFLSK 549 A+ + P++ V+ + P G+PN L C+V PP I I LKNG + + S+ SF Sbjct: 20 AIQKTPQIQVYSRHPPENGKPNILNCYVTQFHPPHIEIQMLKNGKKIPKVEMSDMSF--S 77 Query: 550 NDHSLLKISYLTFLPSDDDFYDCKVEHWGLDKPLLKHWEPEI 675 D S +++ F P++ D Y C+V+H + +P +W+ ++ Sbjct: 78 KDWSFYILAHTEFTPTETDTYACRVKHASMAEPKTVYWDRDM 119 >ref|NP_001029150.1| H-2 class II histocompatibility antigen E-a/k beta-2 [Mus musculus] Length = 287 Score = 62.0 bits (149), Expect = 1e-09 Identities = 29/103 (28%), Positives = 46/103 (44%) Frame = +1 Query: 388 PEVTVFPKSPVMLGQPNTLICHVDNIFPPVINITWLKNGHSVTEGFSETSFLSKNDHSLL 567 P+VTV+P L N L+C V + +P I + W +NG G T + D + Sbjct: 125 PKVTVYPAKTQPLEHHNLLVCSVIDFYPGSIEVRWFRNGEEEKTGVVSTGLIQNRDWTYQ 184 Query: 568 KISYLTFLPSDDDFYDCKVEHWGLDKPLLKHWEPEIPAPMSEL 696 + L +P + Y C+VEH L P+ W + ++L Sbjct: 185 TLVMLEMVPRGGEVYTCQVEHPSLTSPVTVEWRARSTSAQNKL 227 >ref|NP_034518.1| histocompatibility 2, class II, locus Mb2 [Mus musculus] Length = 261 Score = 62.0 bits (149), Expect = 1e-09 Identities = 32/97 (32%), Positives = 46/97 (47%), Gaps = 1/97 (1%) Frame = +1 Query: 382 QVPEVTVFPKSPVMLGQPNTLICHVDNIFPPVINITWLKNGHSV-TEGFSETSFLSKNDH 558 + P V V +P +P L C+V +P + ITW+KNG V + E + D Sbjct: 113 RAPSVRVAQTTPFNTREPVMLACYVWGFYPADVTITWMKNGQLVPSHSNKEKTAQPNGDW 172 Query: 559 SLLKISYLTFLPSDDDFYDCKVEHWGLDKPLLKHWEP 669 + +SYL PS D Y C V+H G +P+ W P Sbjct: 173 TYQTVSYLALTPSYGDVYTCVVQHSGTSEPIRGDWTP 209 >ref|NP_034517.2| histocompatibility 2, class II, locus Mb1 [Mus musculus] Length = 261 Score = 62.0 bits (149), Expect = 1e-09 Identities = 32/97 (32%), Positives = 46/97 (47%), Gaps = 1/97 (1%) Frame = +1 Query: 382 QVPEVTVFPKSPVMLGQPNTLICHVDNIFPPVINITWLKNGHSV-TEGFSETSFLSKNDH 558 + P V V +P +P L C+V +P + ITW+KNG V + E + D Sbjct: 113 RAPSVRVAQTTPFNTREPVMLACYVWGFYPADVTITWMKNGQLVPSHSNKEKTAQPNGDW 172 Query: 559 SLLKISYLTFLPSDDDFYDCKVEHWGLDKPLLKHWEP 669 + +SYL PS D Y C V+H G +P+ W P Sbjct: 173 TYQTVSYLALTPSYGDVYTCVVQHSGTSEPIRGDWTP 209 >ref|NP_034512.1| histocompatibility 2, class II antigen E beta [Mus musculus] Length = 264 Score = 61.6 bits (148), Expect = 2e-09 Identities = 28/103 (27%), Positives = 47/103 (45%) Frame = +1 Query: 388 PEVTVFPKSPVMLGQPNTLICHVDNIFPPVINITWLKNGHSVTEGFSETSFLSKNDHSLL 567 P VTV+P L N L+C V + +P I + W +NG G T + D + Sbjct: 124 PTVTVYPTKTQPLEHHNLLVCSVSDFYPGNIEVRWFRNGKEEKTGIVSTGLVRNGDWTFQ 183 Query: 568 KISYLTFLPSDDDFYDCKVEHWGLDKPLLKHWEPEIPAPMSEL 696 + L +P + Y C+VEH L P+ W+ + + +++ Sbjct: 184 TLVMLETVPQSGEVYTCQVEHPSLTDPVTVEWKAQSTSAQNKM 226 Database: RefSeqMP Posted date: Aug 2, 2006 12:58 AM Number of letters in database: 21,768,885 Number of sequences in database: 45,328 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 54,318,895 Number of Sequences: 45328 Number of extensions: 1347679 Number of successful extensions: 3858 Number of sequences better than 1.0e-05: 10 Number of HSP's better than 0.0 without gapping: 3424 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3831 length of database: 21,768,885 effective HSP length: 106 effective length of database: 16,964,117 effective search space used: 5038342749 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
Search to RefSeqCP
BLASTX 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= 20060611S-027234 (1213 letters) Database: RefSeqCP 33,732 sequences; 19,266,565 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Alignment gi|NP_001011726.1| MHC class II DLA DQalpha chain [Canis famili... 232 e-101 Alignment gi|XP_850803.1| PREDICTED: similar to HLA class II histocompati... 162 4e-55 Alignment gi|NP_001011723.1| MHC class II DR alpha chain [Canis familiaris] 160 9e-54 Alignment gi|XP_532104.2| PREDICTED: similar to HLA class II histocompati... 81 6e-16 Alignment gi|XP_538853.2| PREDICTED: similar to major histocompatibility ... 65 1e-11 Alignment gi|NP_001014403.1| MHC class II DLA-DQ beta chain b1 domain [Ca... 67 4e-11 Alignment gi|XP_861572.1| PREDICTED: similar to major histocompatibility ... 65 1e-10 Alignment gi|NP_001014768.1| MHC class II DLA DRB1 beta chain [Canis fami... 65 1e-10 Alignment gi|XP_535458.1| PREDICTED: similar to beta-2-microglobulin prec... 63 5e-10 Alignment gi|XP_850148.1| PREDICTED: similar to beta-2-microglobulin prec... 63 5e-10 >ref|NP_001011726.1| MHC class II DLA DQalpha chain [Canis familiaris] Length = 255 Score = 232 bits (591), Expect(2) = e-101 Identities = 112/157 (71%), Positives = 119/157 (75%) Frame = +1 Query: 346 LIKRSNNTAAVNQVPEVTVFPKSPVMLGQPNTLICHVDNIFPPVINITWLKNGHSVTEGF 525 + KRSN TAA N+VPEVTVF KSPVMLGQPNTLIC VDNIFPPVIN+TWLKN HSVTEG Sbjct: 99 MTKRSNQTAATNEVPEVTVFSKSPVMLGQPNTLICLVDNIFPPVINVTWLKNRHSVTEGV 158 Query: 526 SETSFLSKNDHSLLKISYLTFLPSDDDFYDCKVEHWGLDKPLLKHWEPEIPAPMSELTET 705 SETSF +K DHS KISYLTFLPS +D YDCKVEHWGLD+PLLKHWEPE+P PMSELTET Sbjct: 159 SETSFFAKGDHSFSKISYLTFLPSAEDIYDCKVEHWGLDEPLLKHWEPEVPTPMSELTET 218 Query: 706 XXXXXXXXXXXXXXXXXXXXXXQGLRSGGPSRHQGSL 816 QGLRSGG SRHQG L Sbjct: 219 VVCALGLAVGLVGIVMGTVFIIQGLRSGGTSRHQGPL 255 Score = 155 bits (392), Expect(2) = e-101 Identities = 73/97 (75%), Positives = 82/97 (84%) Frame = +2 Query: 56 MVPGRVLMWGALALTAVMSACGGEDIAADHVASYGLNVYQSYGPSGYYTHEFDGDEEFYV 235 M+ RVL+ G L LT +MS GGE+I ADHVA+YG+NVYQSYGPSG YTHEFDGDEEFYV Sbjct: 1 MILNRVLILGTLILTIMMSPSGGEEIVADHVANYGINVYQSYGPSGQYTHEFDGDEEFYV 60 Query: 236 DLGKKETVWQLPLFSKFRSFDPQGALRNIATAKHNLN 346 DL KKETVW+LP+FS FRSFDPQGALRN+A K NLN Sbjct: 61 DLEKKETVWRLPVFSTFRSFDPQGALRNLAIIKQNLN 97 >ref|XP_850803.1| PREDICTED: similar to HLA class II histocompatibility antigen, DO alpha chain precursor (MHC class II antigen DOA) (MHC DZ alpha) (MHC DN-alpha) isoform 11 [Canis familiaris] Length = 227 Score = 162 bits (409), Expect(2) = 4e-55 Identities = 74/127 (58%), Positives = 92/127 (72%), Gaps = 7/127 (5%) Frame = +1 Query: 346 LIKRSNNTAAVNQV-------PEVTVFPKSPVMLGQPNTLICHVDNIFPPVINITWLKNG 504 L++RSN T A+N P V V PK V LGQPN LIC VDNIFPPVINITWL+NG Sbjct: 69 LVERSNRTRAINGTHLSSPLPPRVAVLPKFRVELGQPNVLICIVDNIFPPVINITWLRNG 128 Query: 505 HSVTEGFSETSFLSKNDHSLLKISYLTFLPSDDDFYDCKVEHWGLDKPLLKHWEPEIPAP 684 ++EG ++TSF S+ DH K YLTF+PS +D YDCKVEHWGL++PLL+HWEP++P P Sbjct: 129 QIISEGVAQTSFYSQPDHLFRKFCYLTFVPSAEDMYDCKVEHWGLEEPLLRHWEPQVPIP 188 Query: 685 MSELTET 705 + + ET Sbjct: 189 VPDTIET 195 Score = 72.8 bits (177), Expect(2) = 4e-55 Identities = 33/67 (49%), Positives = 44/67 (65%) Frame = +2 Query: 146 VASYGLNVYQSYGPSGYYTHEFDGDEEFYVDLGKKETVWQLPLFSKFRSFDPQGALRNIA 325 + SYG YQSYG SG + HEFDG++ F V+L K++ VW+LP F FDPQ L +IA Sbjct: 1 MGSYGPAFYQSYGSSGQFAHEFDGEQLFSVELKKRQAVWRLPEFGNLAHFDPQNGLASIA 60 Query: 326 TAKHNLN 346 K +L+ Sbjct: 61 VIKAHLD 67 >ref|NP_001011723.1| MHC class II DR alpha chain [Canis familiaris] Length = 254 Score = 160 bits (406), Expect(2) = 9e-54 Identities = 74/119 (62%), Positives = 86/119 (72%) Frame = +1 Query: 346 LIKRSNNTAAVNQVPEVTVFPKSPVMLGQPNTLICHVDNIFPPVINITWLKNGHSVTEGF 525 +IKRSN+T N PEVTV +PV LG+PN LIC +D PPVIN+TWL+NG+ VT G Sbjct: 98 MIKRSNHTPNTNVPPEVTVLSNTPVELGEPNILICFIDKFSPPVINVTWLRNGNPVTTGV 157 Query: 526 SETSFLSKNDHSLLKISYLTFLPSDDDFYDCKVEHWGLDKPLLKHWEPEIPAPMSELTE 702 SET FL + DH K YL FLPS +D YDCKVEHWGLD+PLLKHWE E P P+ E TE Sbjct: 158 SETIFLPREDHLFRKFHYLPFLPSAEDVYDCKVEHWGLDEPLLKHWEFEPPTPLPETTE 216 Score = 69.3 bits (168), Expect(2) = 9e-54 Identities = 33/59 (55%), Positives = 42/59 (71%) Frame = +2 Query: 170 YQSYGPSGYYTHEFDGDEEFYVDLGKKETVWQLPLFSKFRSFDPQGALRNIATAKHNLN 346 Y + PSG + +FDGDE F+VD+ KKETVW+L F +F SF+ QGAL NIA K NL+ Sbjct: 38 YLTPDPSGEFMFDFDGDEIFHVDMEKKETVWRLEEFGRFASFEAQGALANIAVDKANLD 96 >ref|XP_532104.2| PREDICTED: similar to HLA class II histocompatibility antigen, DO alpha chain precursor (MHC class II antigen DOA) (MHC DZ alpha) (MHC DN-alpha) isoform 10 [Canis familiaris] Length = 142 Score = 80.9 bits (198), Expect(2) = 6e-16 Identities = 37/72 (51%), Positives = 48/72 (66%) Frame = +2 Query: 131 IAADHVASYGLNVYQSYGPSGYYTHEFDGDEEFYVDLGKKETVWQLPLFSKFRSFDPQGA 310 I ADH+ SYG YQSYG SG + HEFDG++ F V+L K++ VW+LP F FDPQ Sbjct: 12 IEADHMGSYGPAFYQSYGSSGQFAHEFDGEQLFSVELKKRQAVWRLPEFGNLAHFDPQNG 71 Query: 311 LRNIATAKHNLN 346 L +IA K +L+ Sbjct: 72 LASIAVIKAHLD 83 Score = 22.3 bits (46), Expect(2) = 6e-16 Identities = 13/35 (37%), Positives = 20/35 (57%) Frame = +1 Query: 346 LIKRSNNTAAVNQVPEVTVFPKSPVMLGQPNTLIC 450 L++RSN T A+N+ P+V + + TLIC Sbjct: 85 LVERSNRTRAINE-PQVPIPVPDTI-----ETLIC 113 >ref|XP_538853.2| PREDICTED: similar to major histocompatibility complex, class II, DM alpha precursor isoform 1 [Canis familiaris] Length = 265 Score = 65.5 bits (158), Expect(2) = 1e-11 Identities = 35/105 (33%), Positives = 51/105 (48%) Frame = +1 Query: 388 PEVTVFPKSPVMLGQPNTLICHVDNIFPPVINITWLKNGHSVTEGFSETSFLSKNDHSLL 567 P V VF P+ G+PN L+C + N+FPP + + W + V EG T + + S Sbjct: 133 PMVDVFTLKPLEFGKPNMLVCFISNLFPPTLTVNWWHHLDPV-EGIGPTFVSAVDGFSFQ 191 Query: 568 KISYLTFLPSDDDFYDCKVEHWGLDKPLLKHWEPEIPAPMSELTE 702 SYL F P+ D + C V H + + +W P P S+L E Sbjct: 192 AFSYLNFTPAPSDLFSCVVTHEIDNYTAIAYWVPHDALP-SDLLE 235 Score = 23.1 bits (48), Expect(2) = 1e-11 Identities = 11/36 (30%), Positives = 19/36 (52%) Frame = +2 Query: 173 QSYGPSGYYTHEFDGDEEFYVDLGKKETVWQLPLFS 280 Q++ PS +DGD+ F + + V +LP F+ Sbjct: 57 QNWSPSIGLLEAYDGDQLFSFNFSQNTRVPRLPEFA 92 >ref|NP_001014403.1| MHC class II DLA-DQ beta chain b1 domain [Canis familiaris] Length = 269 Score = 67.0 bits (162), Expect = 4e-11 Identities = 34/126 (26%), Positives = 53/126 (42%) Frame = +1 Query: 319 HSYGKT*FELIKRSNNTAAVNQVPEVTVFPKSPVMLGQPNTLICHVDNIFPPVINITWLK 498 H+YG+ ++R P VT+FP +L N L+C V + +P I + W + Sbjct: 113 HNYGREELTTLQRRVE-------PTVTIFPSKTEVLNHHNLLVCSVTDFYPGQIKVRWFR 165 Query: 499 NGHSVTEGFSETSFLSKNDHSLLKISYLTFLPSDDDFYDCKVEHWGLDKPLLKHWEPEIP 678 N T G T + D + + L P D Y C VEH L P+ W + Sbjct: 166 NDQEQTAGVVSTPLIRNGDWTFQILVMLEMTPQRGDVYTCHVEHASLQSPITVQWRAQSE 225 Query: 679 APMSEL 696 + S++ Sbjct: 226 SAQSKM 231 >ref|XP_861572.1| PREDICTED: similar to major histocompatibility complex, class II, DM alpha precursor isoform 2 [Canis familiaris] Length = 170 Score = 65.5 bits (158), Expect = 1e-10 Identities = 35/105 (33%), Positives = 51/105 (48%) Frame = +1 Query: 388 PEVTVFPKSPVMLGQPNTLICHVDNIFPPVINITWLKNGHSVTEGFSETSFLSKNDHSLL 567 P V VF P+ G+PN L+C + N+FPP + + W + V EG T + + S Sbjct: 38 PMVDVFTLKPLEFGKPNMLVCFISNLFPPTLTVNWWHHLDPV-EGIGPTFVSAVDGFSFQ 96 Query: 568 KISYLTFLPSDDDFYDCKVEHWGLDKPLLKHWEPEIPAPMSELTE 702 SYL F P+ D + C V H + + +W P P S+L E Sbjct: 97 AFSYLNFTPAPSDLFSCVVTHEIDNYTAIAYWVPHDALP-SDLLE 140 >ref|NP_001014768.1| MHC class II DLA DRB1 beta chain [Canis familiaris] Length = 266 Score = 65.1 bits (157), Expect = 1e-10 Identities = 30/103 (29%), Positives = 47/103 (45%) Frame = +1 Query: 388 PEVTVFPKSPVMLGQPNTLICHVDNIFPPVINITWLKNGHSVTEGFSETSFLSKNDHSLL 567 P VTV+P L N L+C V+ +P I + WL+NG G T + D + Sbjct: 126 PTVTVYPTKTQTLQHHNLLVCSVNGFYPGHIEVRWLRNGQEEEAGVVSTGLIRNGDWTFQ 185 Query: 568 KISYLTFLPSDDDFYDCKVEHWGLDKPLLKHWEPEIPAPMSEL 696 + L +P + Y C+VEH L P+ W + + S++ Sbjct: 186 ILVMLEIVPQSGEVYTCQVEHPSLTSPVTVEWRAQSDSAQSKM 228 >ref|XP_535458.1| PREDICTED: similar to beta-2-microglobulin precursor isoform 2 [Canis familiaris] Length = 125 Score = 63.2 bits (152), Expect = 5e-10 Identities = 31/98 (31%), Positives = 51/98 (52%) Frame = +1 Query: 373 AVNQVPEVTVFPKSPVMLGQPNTLICHVDNIFPPVINITWLKNGHSVTEGFSETSFLSKN 552 AV P++ V+ + P G+PN L C+V PP I I LKNG + ++ SF Sbjct: 27 AVQHPPKIQVYSRHPAENGKPNFLNCYVSGFHPPEIEIDLLKNGKEMKAEQTDLSF--SK 84 Query: 553 DHSLLKISYLTFLPSDDDFYDCKVEHWGLDKPLLKHWE 666 D + + + F P++ D + C+V+H L +P + W+ Sbjct: 85 DWTFYLLVHTEFTPNEQDEFSCRVKHVTLSEPQIVKWD 122 >ref|XP_850148.1| PREDICTED: similar to beta-2-microglobulin precursor isoform 3 [Canis familiaris] Length = 125 Score = 63.2 bits (152), Expect = 5e-10 Identities = 31/98 (31%), Positives = 51/98 (52%) Frame = +1 Query: 373 AVNQVPEVTVFPKSPVMLGQPNTLICHVDNIFPPVINITWLKNGHSVTEGFSETSFLSKN 552 AV P++ V+ + P G+PN L C+V PP I I LKNG + ++ SF Sbjct: 27 AVQHPPKIQVYSRHPAENGKPNFLNCYVSGFHPPEIEIDLLKNGKEMKAEQTDLSF--SK 84 Query: 553 DHSLLKISYLTFLPSDDDFYDCKVEHWGLDKPLLKHWE 666 D + + + F P++ D + C+V+H L +P + W+ Sbjct: 85 DWTFYLLVHTEFTPNEQDEFSCRVKHVTLSEPQIVKWD 122 Database: RefSeqCP Posted date: Aug 1, 2006 9:25 PM Number of letters in database: 19,266,565 Number of sequences in database: 33,732 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 47,576,030 Number of Sequences: 33732 Number of extensions: 1185439 Number of successful extensions: 3367 Number of sequences better than 1.0e-05: 10 Number of HSP's better than 0.0 without gapping: 2947 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3353 length of database: 19,266,565 effective HSP length: 105 effective length of database: 15,724,705 effective search space used: 4685962090 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)