BLASTX 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= 20060611S-027485 (1036 letters) Database: RefSeqSP 1040 sequences; 434,620 total letters Searching...done Score E Sequences producing significant alignments: (bits) Value Alignment gi|NP_999078.1| hydroxysteroid 11-beta dehydrogenase 2 [Sus scr... 125 2e-30 Alignment gi|NP_999413.1| 11-beta hydroxysteroid dehydrogenase isoform 1 ... 51 4e-08 Alignment gi|NP_999238.1| 20-beta-hydroxysteroid dehydrogenase [Sus scrofa] 47 1e-06 Alignment gi|NP_999184.1| carbonyl reductase/NADP-retinol dehydrogenase [... 46 1e-06 >ref|NP_999078.1| hydroxysteroid 11-beta dehydrogenase 2 [Sus scrofa] Length = 400 Score = 125 bits (314), Expect = 2e-30 Identities = 75/219 (34%), Positives = 119/219 (54%), Gaps = 6/219 (2%) Frame = +3 Query: 240 KKMLFWLLALLILCGFLWNYKRQL---KIADITDKYIFITGCDTGFGNLAARTFDKKGFH 410 +++L L AL++L W +L + + + + ITGCD+GFG A+ D GF Sbjct: 49 QRLLPPLAALVVLAAAGWIALSRLARPQRLPVATRAVLITGCDSGFGKATAKKLDAMGFT 108 Query: 411 VIAACLT--ESGSTALKAETSERLHTVLLDVTDPENVKRTAQWVKNQVGEKGLWGLINNA 584 V+A L G+ L+A S RL + +D+T P ++ R ++ K GLWGL+NNA Sbjct: 109 VLATVLELDSPGAQELRACCSPRLKLLQMDLTKPADISRVLEFTKVHTASTGLWGLVNNA 168 Query: 585 GILGVLAPTDWLTVEDYREPIEVNLFGLINVTLNMLPLVKKARGRVINVSSIGGRLAFXG 764 G ++A + V YR +EVN FG + +T +LPL++++ GR++ VSS G + F Sbjct: 169 GHNILVADAELSPVATYRSCMEVNFFGTLEMTKALLPLLRRSSGRIVTVSSPAGDMPFPC 228 Query: 765 -GGYAPSKYAVESFHDSLRRDMKAFGVHVACIEPGMVKT 878 Y SK AV DS +++ +GV V+ I+P +T Sbjct: 229 LSAYGTSKAAVALLMDSFSCELQPWGVKVSVIQPACFRT 267 >ref|NP_999413.1| 11-beta hydroxysteroid dehydrogenase isoform 1 [Sus scrofa] Length = 292 Score = 51.2 bits (121), Expect = 4e-08 Identities = 55/227 (24%), Positives = 101/227 (44%), Gaps = 11/227 (4%) Frame = +3 Query: 240 KKMLFWLLALLILCGFLWNYKRQLKIADITDKYIFITGCDTGFGNLAARTFDKKGFHVIA 419 KK L +L + L + ++ + + + K + +TG G G A + G HV+ Sbjct: 5 KKYLLPILGIF-LAYYYYSANEEFRPEMLRGKKVIVTGASKGIGREMAYHLARMGAHVVV 63 Query: 420 ACLTE-------SGSTALKAETSERLHTVLLDVTDPENVKRTAQWVKNQVGEKGLWGLIN 578 +E S S L A ++ + + D+T E A + GL LI Sbjct: 64 TARSEETLKKVVSHSLELGASSAHYVAGTMEDMTFAEQFVAKAGKLLG-----GLDMLIL 118 Query: 579 NAGILGVLAPTDWLTVEDYREPIEVNLFGLINVTLNMLPLVKKARGRVINVSSIGGRLAF 758 N I + + + R +EVN + +++ LP++K++ G ++ VSS G++A Sbjct: 119 NH-ITQAFMTSVYDDIHLVRRSMEVNFLSYVVLSVAALPMLKQSNGSIVVVSSQAGKMAN 177 Query: 759 -XGGGYAPSKYAVESFHDSLRRDMKAFGVHVA---CIEPGMVKTGLA 887 Y+ SK+A++ F S+ ++ V+V+ CI G++ T A Sbjct: 178 PLVAPYSASKFALDGFFSSITKEYSVTKVNVSITLCI-LGLIDTDTA 223 >ref|NP_999238.1| 20-beta-hydroxysteroid dehydrogenase [Sus scrofa] Length = 289 Score = 46.6 bits (109), Expect = 1e-06 Identities = 43/139 (30%), Positives = 68/139 (48%), Gaps = 5/139 (3%) Frame = +3 Query: 345 ITGCDTGFGNLAARTFDKK--GFHVIAACLTESGSTALKAETSERLHTVL--LDVTDPEN 512 +TG + G G R ++ G V+ A G A+K +E L LD+ D ++ Sbjct: 10 VTGANKGIGFAIVRDLCRQFAGDVVLTARDVARGQAAVKQLQAEGLSPRFHQLDIIDLQS 69 Query: 513 VKRTAQWVKNQVGEKGLWGLINNAGILGVLA-PTDWLTVEDYREPIEVNLFGLINVTLNM 689 ++ +++ + G GL L+NNA I L PT + + ++ N G NV + Sbjct: 70 IRALCDFLRKEYG--GLDVLVNNAAIAFQLDNPTPFHIQAELT--MKTNFMGTRNVCTEL 125 Query: 690 LPLVKKARGRVINVSSIGG 746 LPL+K +GRV+NVSS G Sbjct: 126 LPLIKP-QGRVVNVSSTEG 143 >ref|NP_999184.1| carbonyl reductase/NADP-retinol dehydrogenase [Sus scrofa] Length = 260 Score = 46.2 bits (108), Expect = 1e-06 Identities = 48/194 (24%), Positives = 83/194 (42%), Gaps = 6/194 (3%) Frame = +3 Query: 324 ITDKYIFITGCDTGFGNLAARTFDKKGFHVIAACLTESGS----TALKAETSERLHTVLL 491 + +K +T G G AR + G HV+ + + L+ E TV Sbjct: 12 LENKVALVTASTDGIGLAIARRLAQDGAHVVVSSRKQENVDRTVATLQGEGLSVTGTVC- 70 Query: 492 DVTDPENVKRTAQWVKNQVGEKGLWGLINNAGILGVLAPTDWLTVEDYREPIEVNLFGLI 671 V E+ +R N G G+ L++NA + T E + + + VN+ + Sbjct: 71 HVGKAEDRERLVAMAVNLHG--GVDILVSNAAVNPFFGNIIDATEEVWDKILHVNVKATV 128 Query: 672 NVTLNMLP-LVKKARGRVINVSSIGGRLAFXG-GGYAPSKYAVESFHDSLRRDMKAFGVH 845 +T ++P + K+ G V+ VSS+G F G Y SK A+ +L ++ + Sbjct: 129 LMTKAVVPEMEKRGGGSVLIVSSVGAYHPFPNLGPYNVSKTALLGLTKNLAVELAPRNIR 188 Query: 846 VACIEPGMVKTGLA 887 V C+ PG++KT + Sbjct: 189 VNCLAPGLIKTNFS 202 Database: RefSeqSP Posted date: Aug 1, 2006 7:14 PM Number of letters in database: 434,620 Number of sequences in database: 1040 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 979,069 Number of Sequences: 1040 Number of extensions: 24387 Number of successful extensions: 63 Number of sequences better than 1.0e-05: 4 Number of HSP's better than 0.0 without gapping: 53 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 59 length of database: 434,620 effective HSP length: 77 effective length of database: 354,540 effective search space used: 94662180 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
Search to RefSeqBP
BLASTX 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= 20060611S-027485 (1036 letters) Database: RefSeqBP 33,508 sequences; 16,112,626 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Alignment gi|NP_777158.1| NADP-dependent retinol dehydrogenase/reductase ... 414 e-116 Alignment gi|XP_879080.1| PREDICTED: similar to microsomal NAD+-dependent... 239 3e-63 Alignment gi|XP_878985.1| PREDICTED: similar to microsomal NAD+-dependent... 239 3e-63 Alignment gi|XP_878888.1| PREDICTED: similar to microsomal NAD+-dependent... 239 3e-63 Alignment gi|XP_878794.1| PREDICTED: similar to microsomal NAD+-dependent... 239 3e-63 Alignment gi|XP_869667.1| PREDICTED: similar to microsomal NAD+-dependent... 239 3e-63 Alignment gi|XP_583421.2| PREDICTED: similar to orphan short-chain dehydr... 226 3e-59 Alignment gi|NP_001030472.1| hypothetical protein LOC533086 [Bos taurus] 224 7e-59 Alignment gi|XP_601132.2| PREDICTED: similar to microsomal NAD+-dependent... 224 7e-59 Alignment gi|NP_776591.1| retinol dehydrogenase 5 (11-cis and 9-cis) [Bos... 215 5e-56 >ref|NP_777158.1| NADP-dependent retinol dehydrogenase/reductase [Bos taurus] Length = 319 Score = 414 bits (1063), Expect = e-116 Identities = 203/236 (86%), Positives = 216/236 (91%), Gaps = 4/236 (1%) Frame = +3 Query: 246 MLFWLLALLILCGFLWNYKRQLKIADITDKYIFITGCDTGFGNLAARTFDKKGFHVIAAC 425 MLFWLL LLILCGFLWNYKRQLKIA+ITDKYIFITGCDTGFGNLAARTFDKKGFHVIAAC Sbjct: 1 MLFWLLVLLILCGFLWNYKRQLKIANITDKYIFITGCDTGFGNLAARTFDKKGFHVIAAC 60 Query: 426 LTESGSTALKAETSERLHTVLLDVTDPENVKRTAQWVKNQVGEKGLWGLINNAGILGVLA 605 LTESGSTALKAETSERLHTVLLDVTDPENVKR AQWVKNQVGEKGLWGLINNAGILGVLA Sbjct: 61 LTESGSTALKAETSERLHTVLLDVTDPENVKRAAQWVKNQVGEKGLWGLINNAGILGVLA 120 Query: 606 PTDWLTVEDYREPIEVNLFGLINVTLNMLPLVKKARGRVINVSSIGGRLAFXGGGYAPSK 785 P DWLTVEDYREP+EVNLFGLI+VTLNMLPLVKKARGR+INVSSIGGRLAF GGGY+PSK Sbjct: 121 PNDWLTVEDYREPVEVNLFGLISVTLNMLPLVKKARGRIINVSSIGGRLAFGGGGYSPSK 180 Query: 786 YAVESFHDSLRRDMKAFGVHVACIEPGMVKTGLADQ*RRLKKT----RHLGSSVSR 941 YAVE F+DSLRRDMKAFGVHVACIEPG+ KT L+D + +K +HL + + Sbjct: 181 YAVEGFNDSLRRDMKAFGVHVACIEPGLFKTNLSDPEKTAEKKLAIWKHLSPDIKQ 236 >ref|XP_879080.1| PREDICTED: similar to microsomal NAD+-dependent retinol dehydrogenase 4 isoform 5 [Bos taurus] Length = 317 Score = 239 bits (609), Expect = 3e-63 Identities = 115/213 (53%), Positives = 157/213 (73%) Frame = +3 Query: 246 MLFWLLALLILCGFLWNYKRQLKIADITDKYIFITGCDTGFGNLAARTFDKKGFHVIAAC 425 M +L+ L+ L L Y+ + ++ + DK++FITGCD+GFGNL AR D +G V+AAC Sbjct: 1 MWLYLVVLVGLYYLLRWYRERQVVSHLRDKFVFITGCDSGFGNLLARQLDLRGLRVLAAC 60 Query: 426 LTESGSTALKAETSERLHTVLLDVTDPENVKRTAQWVKNQVGEKGLWGLINNAGILGVLA 605 LTE G+ L+ +TS+RL TV+LDVT ++V +WVK +VG++GLWGL+NNAGI A Sbjct: 61 LTEKGAEQLRNQTSDRLQTVILDVTKTDSVAAATEWVKERVGDRGLWGLVNNAGISTPTA 120 Query: 606 PTDWLTVEDYREPIEVNLFGLINVTLNMLPLVKKARGRVINVSSIGGRLAFXGGGYAPSK 785 P +WLT +D+ + ++VNL G+I+VTL++LPLV+KARGRV+NVSSI GR+A GGGY SK Sbjct: 121 PNEWLTKQDFMKILDVNLLGVIDVTLSVLPLVRKARGRVVNVSSIMGRVALLGGGYCMSK 180 Query: 786 YAVESFHDSLRRDMKAFGVHVACIEPGMVKTGL 884 Y VE+F DSLRR++ FGV V IEPG KT + Sbjct: 181 YGVEAFSDSLRRELSYFGVKVVMIEPGYFKTAV 213 >ref|XP_878985.1| PREDICTED: similar to microsomal NAD+-dependent retinol dehydrogenase 4 isoform 4 [Bos taurus] Length = 317 Score = 239 bits (609), Expect = 3e-63 Identities = 115/213 (53%), Positives = 157/213 (73%) Frame = +3 Query: 246 MLFWLLALLILCGFLWNYKRQLKIADITDKYIFITGCDTGFGNLAARTFDKKGFHVIAAC 425 M +L+ L+ L L Y+ + ++ + DK++FITGCD+GFGNL AR D +G V+AAC Sbjct: 1 MWLYLVVLVGLYYLLRWYRERQVVSHLRDKFVFITGCDSGFGNLLARQLDLRGLRVLAAC 60 Query: 426 LTESGSTALKAETSERLHTVLLDVTDPENVKRTAQWVKNQVGEKGLWGLINNAGILGVLA 605 LTE G+ L+ +TS+RL TV+LDVT ++V +WVK +VG++GLWGL+NNAGI A Sbjct: 61 LTEKGAEQLRNQTSDRLQTVILDVTKTDSVAAATEWVKERVGDRGLWGLVNNAGISTPTA 120 Query: 606 PTDWLTVEDYREPIEVNLFGLINVTLNMLPLVKKARGRVINVSSIGGRLAFXGGGYAPSK 785 P +WLT +D+ + ++VNL G+I+VTL++LPLV+KARGRV+NVSSI GR+A GGGY SK Sbjct: 121 PNEWLTKQDFMKILDVNLLGVIDVTLSVLPLVRKARGRVVNVSSIMGRVALLGGGYCMSK 180 Query: 786 YAVESFHDSLRRDMKAFGVHVACIEPGMVKTGL 884 Y VE+F DSLRR++ FGV V IEPG KT + Sbjct: 181 YGVEAFSDSLRRELSYFGVKVVMIEPGYFKTAV 213 >ref|XP_878888.1| PREDICTED: similar to microsomal NAD+-dependent retinol dehydrogenase 4 isoform 3 [Bos taurus] Length = 317 Score = 239 bits (609), Expect = 3e-63 Identities = 115/213 (53%), Positives = 157/213 (73%) Frame = +3 Query: 246 MLFWLLALLILCGFLWNYKRQLKIADITDKYIFITGCDTGFGNLAARTFDKKGFHVIAAC 425 M +L+ L+ L L Y+ + ++ + DK++FITGCD+GFGNL AR D +G V+AAC Sbjct: 1 MWLYLVVLVGLYYLLRWYRERQVVSHLRDKFVFITGCDSGFGNLLARQLDLRGLRVLAAC 60 Query: 426 LTESGSTALKAETSERLHTVLLDVTDPENVKRTAQWVKNQVGEKGLWGLINNAGILGVLA 605 LTE G+ L+ +TS+RL TV+LDVT ++V +WVK +VG++GLWGL+NNAGI A Sbjct: 61 LTEKGAEQLRNQTSDRLQTVILDVTKTDSVAAATEWVKERVGDRGLWGLVNNAGISTPTA 120 Query: 606 PTDWLTVEDYREPIEVNLFGLINVTLNMLPLVKKARGRVINVSSIGGRLAFXGGGYAPSK 785 P +WLT +D+ + ++VNL G+I+VTL++LPLV+KARGRV+NVSSI GR+A GGGY SK Sbjct: 121 PNEWLTKQDFMKILDVNLLGVIDVTLSVLPLVRKARGRVVNVSSIMGRVALLGGGYCMSK 180 Query: 786 YAVESFHDSLRRDMKAFGVHVACIEPGMVKTGL 884 Y VE+F DSLRR++ FGV V IEPG KT + Sbjct: 181 YGVEAFSDSLRRELSYFGVKVVMIEPGYFKTAV 213 >ref|XP_878794.1| PREDICTED: similar to microsomal NAD+-dependent retinol dehydrogenase 4 isoform 2 [Bos taurus] Length = 317 Score = 239 bits (609), Expect = 3e-63 Identities = 115/213 (53%), Positives = 157/213 (73%) Frame = +3 Query: 246 MLFWLLALLILCGFLWNYKRQLKIADITDKYIFITGCDTGFGNLAARTFDKKGFHVIAAC 425 M +L+ L+ L L Y+ + ++ + DK++FITGCD+GFGNL AR D +G V+AAC Sbjct: 1 MWLYLVVLVGLYYLLRWYRERQVVSHLRDKFVFITGCDSGFGNLLARQLDLRGLRVLAAC 60 Query: 426 LTESGSTALKAETSERLHTVLLDVTDPENVKRTAQWVKNQVGEKGLWGLINNAGILGVLA 605 LTE G+ L+ +TS+RL TV+LDVT ++V +WVK +VG++GLWGL+NNAGI A Sbjct: 61 LTEKGAEQLRNQTSDRLQTVILDVTKTDSVAAATEWVKERVGDRGLWGLVNNAGISTPTA 120 Query: 606 PTDWLTVEDYREPIEVNLFGLINVTLNMLPLVKKARGRVINVSSIGGRLAFXGGGYAPSK 785 P +WLT +D+ + ++VNL G+I+VTL++LPLV+KARGRV+NVSSI GR+A GGGY SK Sbjct: 121 PNEWLTKQDFMKILDVNLLGVIDVTLSVLPLVRKARGRVVNVSSIMGRVALLGGGYCMSK 180 Query: 786 YAVESFHDSLRRDMKAFGVHVACIEPGMVKTGL 884 Y VE+F DSLRR++ FGV V IEPG KT + Sbjct: 181 YGVEAFSDSLRRELSYFGVKVVMIEPGYFKTAV 213 >ref|XP_869667.1| PREDICTED: similar to microsomal NAD+-dependent retinol dehydrogenase 4 isoform 1 [Bos taurus] Length = 317 Score = 239 bits (609), Expect = 3e-63 Identities = 115/213 (53%), Positives = 157/213 (73%) Frame = +3 Query: 246 MLFWLLALLILCGFLWNYKRQLKIADITDKYIFITGCDTGFGNLAARTFDKKGFHVIAAC 425 M +L+ L+ L L Y+ + ++ + DK++FITGCD+GFGNL AR D +G V+AAC Sbjct: 1 MWLYLVVLVGLYYLLRWYRERQVVSHLRDKFVFITGCDSGFGNLLARQLDLRGLRVLAAC 60 Query: 426 LTESGSTALKAETSERLHTVLLDVTDPENVKRTAQWVKNQVGEKGLWGLINNAGILGVLA 605 LTE G+ L+ +TS+RL TV+LDVT ++V +WVK +VG++GLWGL+NNAGI A Sbjct: 61 LTEKGAEQLRNQTSDRLQTVILDVTKTDSVAAATEWVKERVGDRGLWGLVNNAGISTPTA 120 Query: 606 PTDWLTVEDYREPIEVNLFGLINVTLNMLPLVKKARGRVINVSSIGGRLAFXGGGYAPSK 785 P +WLT +D+ + ++VNL G+I+VTL++LPLV+KARGRV+NVSSI GR+A GGGY SK Sbjct: 121 PNEWLTKQDFMKILDVNLLGVIDVTLSVLPLVRKARGRVVNVSSIMGRVALLGGGYCMSK 180 Query: 786 YAVESFHDSLRRDMKAFGVHVACIEPGMVKTGL 884 Y VE+F DSLRR++ FGV V IEPG KT + Sbjct: 181 YGVEAFSDSLRRELSYFGVKVVMIEPGYFKTAV 213 >ref|XP_583421.2| PREDICTED: similar to orphan short-chain dehydrogenase / reductase [Bos taurus] Length = 313 Score = 226 bits (575), Expect = 3e-59 Identities = 106/190 (55%), Positives = 143/190 (75%) Frame = +3 Query: 315 IADITDKYIFITGCDTGFGNLAARTFDKKGFHVIAACLTESGSTALKAETSERLHTVLLD 494 + +++DKY+FITGCD+GFGNL AR +G V+AAC T+ G+ L+ +TS +L T+LLD Sbjct: 20 VRNLSDKYVFITGCDSGFGNLLARQLVDRGMRVLAACFTKEGAQKLQQDTSYQLQTILLD 79 Query: 495 VTDPENVKRTAQWVKNQVGEKGLWGLINNAGILGVLAPTDWLTVEDYREPIEVNLFGLIN 674 VT E++K QWV++QVGE+GLW L+NNAG+ P +WLT ED+ + I VNL GLI Sbjct: 80 VTKTESIKAATQWVRDQVGEQGLWALVNNAGVGLPSGPNEWLTKEDFVKVINVNLVGLIE 139 Query: 675 VTLNMLPLVKKARGRVINVSSIGGRLAFXGGGYAPSKYAVESFHDSLRRDMKAFGVHVAC 854 VTL+MLP+VKKARGRV+N+SS GGR+A GGGY SK+ VE+F DS+RR++ FGV V+ Sbjct: 140 VTLHMLPMVKKARGRVVNMSSSGGRVAVIGGGYCISKFGVEAFSDSIRRELHYFGVKVSI 199 Query: 855 IEPGMVKTGL 884 IEPG +T + Sbjct: 200 IEPGNFRTAI 209 >ref|NP_001030472.1| hypothetical protein LOC533086 [Bos taurus] Length = 317 Score = 224 bits (572), Expect = 7e-59 Identities = 110/215 (51%), Positives = 155/215 (72%), Gaps = 3/215 (1%) Frame = +3 Query: 255 WL-LALLILCGFL--WNYKRQLKIADITDKYIFITGCDTGFGNLAARTFDKKGFHVIAAC 425 WL LA+L+ +L W +RQ+ ++ + DK++FITGCD+GFGN AR D +G V+A C Sbjct: 2 WLYLAVLLGLYYLLRWFRERQV-VSHLQDKFVFITGCDSGFGNQLARQLDLRGLRVLAGC 60 Query: 426 LTESGSTALKAETSERLHTVLLDVTDPENVKRTAQWVKNQVGEKGLWGLINNAGILGVLA 605 LTE G+ L+ +TS+RL TV+LDVT E++ +WVK VG++GLWGL+NNAGI Sbjct: 61 LTEQGAEQLRNQTSDRLQTVILDVTKTESIAAATEWVKECVGDRGLWGLVNNAGIFHSHG 120 Query: 606 PTDWLTVEDYREPIEVNLFGLINVTLNMLPLVKKARGRVINVSSIGGRLAFXGGGYAPSK 785 +W+ +E YR+ + VNL G+I VTL+MLPLV+KA+GR++NVSSI GR+AF G Y+ SK Sbjct: 121 YAEWIKIETYRDTLRVNLIGVIEVTLSMLPLVRKAQGRIVNVSSILGRIAFFGAVYSCSK 180 Query: 786 YAVESFHDSLRRDMKAFGVHVACIEPGMVKTGLAD 890 Y VE+F D LRR+++ FGV V+ +EPG +T + D Sbjct: 181 YGVEAFSDILRRELQHFGVKVSMVEPGYFRTAMTD 215 >ref|XP_601132.2| PREDICTED: similar to microsomal NAD+-dependent retinol dehydrogenase 4 [Bos taurus] Length = 338 Score = 224 bits (572), Expect = 7e-59 Identities = 115/237 (48%), Positives = 156/237 (65%), Gaps = 21/237 (8%) Frame = +3 Query: 246 MLFWLLALLILCGFLWNYKRQLKIADITDKYIFITGCDTGFGNLAARTFDKKGFHVIAAC 425 M +L LL L FL Y+ + ++ + DK++FITGCD+GFGN AR D KG V+AAC Sbjct: 1 MWLYLAVLLGLYYFLRWYRERQVVSHLRDKFVFITGCDSGFGNQLARQLDLKGLRVLAAC 60 Query: 426 LTESGSTALKAETSERLHTVLLDVTDPENVKRTAQWVKNQVGEKGLWGLINNAGILGVLA 605 L + G+ L+ +TS+RL TV+LDVT E+V +WVK +VG++GLWGL+NNAGI +A Sbjct: 61 LMKQGAEQLRNQTSDRLQTVILDVTKTESVAAATEWVKERVGDRGLWGLVNNAGICTPMA 120 Query: 606 PTDWLTVEDYREPIEVNLFGLINVTLNMLPLVKKARGRVINVSSIGGRLAFXGGGYAPSK 785 P WLT +D+ + +EVNL G+I+VTL++LPLV+KARG V+NVSS+ GR+A GGGY+ SK Sbjct: 121 PNQWLTKQDFVKILEVNLLGVIDVTLSLLPLVRKARGHVVNVSSVMGRMAVFGGGYSMSK 180 Query: 786 YAVESFHDSL---------------------RRDMKAFGVHVACIEPGMVKTGLADQ 893 Y VE+F DSL RR++ FGV VA IEPG T + + Sbjct: 181 YGVEAFSDSLSSSHLLCMSFDGKHVHVFGIPRRELSYFGVKVAVIEPGYFLTDMTQE 237 >ref|NP_776591.1| retinol dehydrogenase 5 (11-cis and 9-cis) [Bos taurus] Length = 319 Score = 215 bits (547), Expect = 5e-56 Identities = 99/181 (54%), Positives = 135/181 (74%) Frame = +3 Query: 336 YIFITGCDTGFGNLAARTFDKKGFHVIAACLTESGSTALKAETSERLHTVLLDVTDPENV 515 +IFITGCD+GFG L A D++GF V+A+CLT SG+ L+ S RLHT LLDVTDP+++ Sbjct: 31 FIFITGCDSGFGRLLALRLDQRGFRVLASCLTPSGAEDLQRVASSRLHTTLLDVTDPQSI 90 Query: 516 KRTAQWVKNQVGEKGLWGLINNAGILGVLAPTDWLTVEDYREPIEVNLFGLINVTLNMLP 695 ++ +WV+ VGE GL+GL+NNAG+ G++ PT W T ED++ + VN G I VTL +LP Sbjct: 91 RQAVKWVETHVGEAGLFGLVNNAGVAGIIGPTPWQTREDFQRVLNVNTLGPIGVTLALLP 150 Query: 696 LVKKARGRVINVSSIGGRLAFXGGGYAPSKYAVESFHDSLRRDMKAFGVHVACIEPGMVK 875 L+ +ARGRVIN++S+ GRLA GGGY SK+ +E+F DSLRRD+ FGV V+ +EPG + Sbjct: 151 LLLQARGRVINITSVLGRLAANGGGYCVSKFGLEAFSDSLRRDVAPFGVRVSIVEPGFFR 210 Query: 876 T 878 T Sbjct: 211 T 211 Database: RefSeqBP Posted date: Aug 1, 2006 7:14 PM Number of letters in database: 16,112,626 Number of sequences in database: 33,508 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 35,902,971 Number of Sequences: 33508 Number of extensions: 885905 Number of successful extensions: 2417 Number of sequences better than 1.0e-05: 10 Number of HSP's better than 0.0 without gapping: 2262 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2391 length of database: 16,112,626 effective HSP length: 102 effective length of database: 12,694,810 effective search space used: 3072144020 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
Search to RefSeqHP
BLASTX 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= 20060611S-027485 (1036 letters) Database: RefSeqHP 39,411 sequences; 17,774,539 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Alignment gi|NP_005762.2| NADP-dependent retinol dehydrogenase/reductase ... 394 e-110 Alignment gi|NP_954674.1| NADP-dependent retinol dehydrogenase/reductase ... 394 e-110 Alignment gi|NP_003716.2| 3-hydroxysteroid epimerase [Homo sapiens] 235 4e-62 Alignment gi|NP_003699.2| retinol dehydrogenase 16 [Homo sapiens] 229 3e-60 Alignment gi|NP_683695.1| orphan short-chain dehydrogenase / reductase [H... 226 3e-59 Alignment gi|NP_002896.2| retinol dehydrogenase 5 (11-cis and 9-cis) [Hom... 217 1e-56 Alignment gi|NP_976059.1| 3-hydroxybutyrate dehydrogenase precursor [Homo... 138 7e-33 Alignment gi|NP_976060.1| 3-hydroxybutyrate dehydrogenase precursor [Homo... 138 7e-33 Alignment gi|NP_004042.1| 3-hydroxybutyrate dehydrogenase precursor [Homo... 138 7e-33 Alignment gi|NP_002144.1| hydroxysteroid (17-beta) dehydrogenase 2 [Homo ... 137 1e-32 >ref|NP_005762.2| NADP-dependent retinol dehydrogenase/reductase [Homo sapiens] Length = 319 Score = 394 bits (1011), Expect(2) = e-110 Identities = 192/222 (86%), Positives = 206/222 (92%) Frame = +3 Query: 246 MLFWLLALLILCGFLWNYKRQLKIADITDKYIFITGCDTGFGNLAARTFDKKGFHVIAAC 425 MLFW+L LLILCGFLW K +LKI DITDKYIFITGCD+GFGNLAARTFDKKGFHVIAAC Sbjct: 1 MLFWVLGLLILCGFLWTRKGKLKIEDITDKYIFITGCDSGFGNLAARTFDKKGFHVIAAC 60 Query: 426 LTESGSTALKAETSERLHTVLLDVTDPENVKRTAQWVKNQVGEKGLWGLINNAGILGVLA 605 LTESGSTALKAETSERL TVLLDVTDPENVKRTAQWVKNQVGEKGLWGLINNAG+ GVLA Sbjct: 61 LTESGSTALKAETSERLRTVLLDVTDPENVKRTAQWVKNQVGEKGLWGLINNAGVPGVLA 120 Query: 606 PTDWLTVEDYREPIEVNLFGLINVTLNMLPLVKKARGRVINVSSIGGRLAFXGGGYAPSK 785 PTDWLT+EDYREPIEVNLFGLI+VTLNMLPLVKKA+GRVINVSS+GGRLA GGGY PSK Sbjct: 121 PTDWLTLEDYREPIEVNLFGLISVTLNMLPLVKKAQGRVINVSSVGGRLAIVGGGYTPSK 180 Query: 786 YAVESFHDSLRRDMKAFGVHVACIEPGMVKTGLADQ*RRLKK 911 YAVE F+DSLRRDMKAFGVHV+CIEPG+ KT LAD + ++K Sbjct: 181 YAVEGFNDSLRRDMKAFGVHVSCIEPGLFKTNLADPVKVIEK 222 Score = 25.8 bits (55), Expect(2) = e-110 Identities = 13/35 (37%), Positives = 21/35 (60%), Gaps = 2/35 (5%) Frame = +1 Query: 907 KKLXIWDHLSPE-SDTIWRGYLE-NVKQTEGSNPY 1005 KKL IW+ LSP+ GY+E ++ + +G+ Y Sbjct: 222 KKLAIWEQLSPDIKQQYGEGYIEKSLDKLKGNKSY 256 >ref|NP_954674.1| NADP-dependent retinol dehydrogenase/reductase [Homo sapiens] Length = 319 Score = 394 bits (1011), Expect(2) = e-110 Identities = 192/222 (86%), Positives = 206/222 (92%) Frame = +3 Query: 246 MLFWLLALLILCGFLWNYKRQLKIADITDKYIFITGCDTGFGNLAARTFDKKGFHVIAAC 425 MLFW+L LLILCGFLW K +LKI DITDKYIFITGCD+GFGNLAARTFDKKGFHVIAAC Sbjct: 1 MLFWVLGLLILCGFLWTRKGKLKIEDITDKYIFITGCDSGFGNLAARTFDKKGFHVIAAC 60 Query: 426 LTESGSTALKAETSERLHTVLLDVTDPENVKRTAQWVKNQVGEKGLWGLINNAGILGVLA 605 LTESGSTALKAETSERL TVLLDVTDPENVKRTAQWVKNQVGEKGLWGLINNAG+ GVLA Sbjct: 61 LTESGSTALKAETSERLRTVLLDVTDPENVKRTAQWVKNQVGEKGLWGLINNAGVPGVLA 120 Query: 606 PTDWLTVEDYREPIEVNLFGLINVTLNMLPLVKKARGRVINVSSIGGRLAFXGGGYAPSK 785 PTDWLT+EDYREPIEVNLFGLI+VTLNMLPLVKKA+GRVINVSS+GGRLA GGGY PSK Sbjct: 121 PTDWLTLEDYREPIEVNLFGLISVTLNMLPLVKKAQGRVINVSSVGGRLAIVGGGYTPSK 180 Query: 786 YAVESFHDSLRRDMKAFGVHVACIEPGMVKTGLADQ*RRLKK 911 YAVE F+DSLRRDMKAFGVHV+CIEPG+ KT LAD + ++K Sbjct: 181 YAVEGFNDSLRRDMKAFGVHVSCIEPGLFKTNLADPVKVIEK 222 Score = 25.8 bits (55), Expect(2) = e-110 Identities = 13/35 (37%), Positives = 21/35 (60%), Gaps = 2/35 (5%) Frame = +1 Query: 907 KKLXIWDHLSPE-SDTIWRGYLE-NVKQTEGSNPY 1005 KKL IW+ LSP+ GY+E ++ + +G+ Y Sbjct: 222 KKLAIWEQLSPDIKQQYGEGYIEKSLDKLKGNKSY 256 >ref|NP_003716.2| 3-hydroxysteroid epimerase [Homo sapiens] Length = 317 Score = 235 bits (600), Expect = 4e-62 Identities = 113/224 (50%), Positives = 158/224 (70%) Frame = +3 Query: 246 MLFWLLALLILCGFLWNYKRQLKIADITDKYIFITGCDTGFGNLAARTFDKKGFHVIAAC 425 M +L A + L L Y+ + ++ + DKY+FITGCD+GFGNL AR D +G V+AAC Sbjct: 1 MWLYLAAFVGLYYLLHWYRERQVVSHLQDKYVFITGCDSGFGNLLARQLDARGLRVLAAC 60 Query: 426 LTESGSTALKAETSERLHTVLLDVTDPENVKRTAQWVKNQVGEKGLWGLINNAGILGVLA 605 LTE G+ L+ +TS+RL TV LDVT E++ QWVK VG++GLWGL+NNAGIL + Sbjct: 61 LTEKGAEQLRGQTSDRLETVTLDVTKMESIAAATQWVKEHVGDRGLWGLVNNAGILTPIT 120 Query: 606 PTDWLTVEDYREPIEVNLFGLINVTLNMLPLVKKARGRVINVSSIGGRLAFXGGGYAPSK 785 +WL ED ++VNL G+I VTL+MLPLV++ARGR++NVSSI GR+AF GGY SK Sbjct: 121 LCEWLNTEDSMNMLKVNLIGVIQVTLSMLPLVRRARGRIVNVSSILGRVAFFVGGYCVSK 180 Query: 786 YAVESFHDSLRRDMKAFGVHVACIEPGMVKTGLADQ*RRLKKTR 917 Y VE+F D LRR+++ FGV ++ +EPG +TG+ + + L++ + Sbjct: 181 YGVEAFSDILRREIQHFGVKISIVEPGYFRTGMTNMTQSLERMK 224 >ref|NP_003699.2| retinol dehydrogenase 16 [Homo sapiens] Length = 317 Score = 229 bits (584), Expect = 3e-60 Identities = 118/220 (53%), Positives = 157/220 (71%), Gaps = 2/220 (0%) Frame = +3 Query: 255 WL-LALLILCGFLWNYKRQLKI-ADITDKYIFITGCDTGFGNLAARTFDKKGFHVIAACL 428 WL LA+ + +L ++ R+ ++ + + DKY+FITGCD+GFG L AR D +G V+AACL Sbjct: 2 WLYLAVFVGLYYLLHWYRERQVLSHLRDKYVFITGCDSGFGKLLARQLDARGLRVLAACL 61 Query: 429 TESGSTALKAETSERLHTVLLDVTDPENVKRTAQWVKNQVGEKGLWGLINNAGILGVLAP 608 TE G+ L+ +TS+RL TV LDVT E+V AQWVK V +KGLWGL+NNAGI AP Sbjct: 62 TEKGAEQLRGQTSDRLETVTLDVTKTESVAAAAQWVKECVRDKGLWGLVNNAGISLPTAP 121 Query: 609 TDWLTVEDYREPIEVNLFGLINVTLNMLPLVKKARGRVINVSSIGGRLAFXGGGYAPSKY 788 + LT +D ++VNL G+I+VTLN+LPLV++ARGRV+NV S+ GR++ GGGY SKY Sbjct: 122 NELLTKQDLLTILDVNLLGVIDVTLNLLPLVRRARGRVVNVFSVMGRVSLFGGGYCISKY 181 Query: 789 AVESFHDSLRRDMKAFGVHVACIEPGMVKTGLADQ*RRLK 908 VE+F DSLRR++ FGV VA IEPG KT + + R LK Sbjct: 182 GVEAFSDSLRRELSYFGVKVAMIEPGYFKTAVTSKERFLK 221 >ref|NP_683695.1| orphan short-chain dehydrogenase / reductase [Homo sapiens] Length = 313 Score = 226 bits (575), Expect = 3e-59 Identities = 115/237 (48%), Positives = 160/237 (67%), Gaps = 1/237 (0%) Frame = +3 Query: 261 LALLILCGFLWNYKRQLK-IADITDKYIFITGCDTGFGNLAARTFDKKGFHVIAACLTES 437 +A L F++ + + + ++++KY+FITGCD+GFGNL A+ +G V+AAC TE Sbjct: 1 MAALTDLSFMYRWFKNCNLVGNLSEKYVFITGCDSGFGNLLAKQLVDRGMQVLAACFTEE 60 Query: 438 GSTALKAETSERLHTVLLDVTDPENVKRTAQWVKNQVGEKGLWGLINNAGILGVLAPTDW 617 GS L+ +TS RL T LLDVT E++K AQWV+++VGE+GLW L+NNAG+ P +W Sbjct: 61 GSQKLQRDTSYRLQTTLLDVTKSESIKAAAQWVRDKVGEQGLWALVNNAGVGLPSGPNEW 120 Query: 618 LTVEDYREPIEVNLFGLINVTLNMLPLVKKARGRVINVSSIGGRLAFXGGGYAPSKYAVE 797 LT +D+ + I VNL GLI VTL+MLP+VK+ARGRV+N+SS GGR+A GGGY SK+ VE Sbjct: 121 LTKDDFVKVINVNLVGLIEVTLHMLPMVKRARGRVVNMSSSGGRVAVIGGGYCVSKFGVE 180 Query: 798 SFHDSLRRDMKAFGVHVACIEPGMVKTGLADQ*RRLKKTRHLGSSVSRIRHHMERLP 968 +F DS+RR++ FGV V IEPG +T + + + SR+R ERLP Sbjct: 181 AFSDSIRRELYYFGVKVCIIEPGNYRTAILGK----------ENLESRMRKLWERLP 227 >ref|NP_002896.2| retinol dehydrogenase 5 (11-cis and 9-cis) [Homo sapiens] Length = 318 Score = 217 bits (552), Expect = 1e-56 Identities = 105/210 (50%), Positives = 149/210 (70%), Gaps = 2/210 (0%) Frame = +3 Query: 255 WLLALL--ILCGFLWNYKRQLKIADITDKYIFITGCDTGFGNLAARTFDKKGFHVIAACL 428 WL LL +L LW R + ++ ++FITGCD+GFG L A D++GF V+A+CL Sbjct: 2 WLPLLLGALLWAVLW-LLRDRQSLPASNAFVFITGCDSGFGRLLALQLDQRGFRVLASCL 60 Query: 429 TESGSTALKAETSERLHTVLLDVTDPENVKRTAQWVKNQVGEKGLWGLINNAGILGVLAP 608 T SG+ L+ S RLHT LLD+TDP++V++ A+WV+ V E GL+GL+NNAG+ G++ P Sbjct: 61 TPSGAEDLQRVASSRLHTTLLDITDPQSVQQAAKWVEMHVKEAGLFGLVNNAGVAGIIGP 120 Query: 609 TDWLTVEDYREPIEVNLFGLINVTLNMLPLVKKARGRVINVSSIGGRLAFXGGGYAPSKY 788 T WLT +D++ + VN G I VTL +LPL+++ARGRVIN++S+ GRLA GGGY SK+ Sbjct: 121 TPWLTRDDFQRVLNVNTMGPIGVTLALLPLLQQARGRVINITSVLGRLAANGGGYCVSKF 180 Query: 789 AVESFHDSLRRDMKAFGVHVACIEPGMVKT 878 +E+F DSLRRD+ FG+ V+ +EPG +T Sbjct: 181 GLEAFSDSLRRDVAHFGIRVSIVEPGFFRT 210 >ref|NP_976059.1| 3-hydroxybutyrate dehydrogenase precursor [Homo sapiens] Length = 343 Score = 138 bits (348), Expect = 7e-33 Identities = 75/188 (39%), Positives = 116/188 (61%), Gaps = 7/188 (3%) Frame = +3 Query: 324 ITDKYIFITGCDTGFGNLAARTFDKKGFHVIAACLTES----GSTALKAETSERLHTVLL 491 + K + +TGCD+GFG A+ KGF V A CL + G L + S+RL TV L Sbjct: 53 VGSKAVLVTGCDSGFGFSLAKHLHSKGFLVFAGCLMKDKGHDGVKELDSLNSDRLRTVQL 112 Query: 492 DVTDPENVKRTAQWVKNQVG--EKGLWGLINNAGILGVLAPTDWLTVEDYREPIEVNLFG 665 +V E V++ + V++ + EKG+WGL+NNAGI ++ ++E Y++ EVNL+G Sbjct: 113 NVCSSEEVEKVVEIVRSSLKDPEKGMWGLVNNAGI-STFGEVEFTSLETYKQVAEVNLWG 171 Query: 666 LINVTLNMLPLVKKARGRVINVSSIGGRLAF-XGGGYAPSKYAVESFHDSLRRDMKAFGV 842 + +T + LPL+++A+GRV+N+SS+ GR+A Y +K+ VE+F D LR +M GV Sbjct: 172 TVRMTKSFLPLIRRAKGRVVNISSMLGRMANPARSPYCITKFGVEAFSDCLRYEMYPLGV 231 Query: 843 HVACIEPG 866 V+ +EPG Sbjct: 232 KVSVVEPG 239 >ref|NP_976060.1| 3-hydroxybutyrate dehydrogenase precursor [Homo sapiens] Length = 343 Score = 138 bits (348), Expect = 7e-33 Identities = 75/188 (39%), Positives = 116/188 (61%), Gaps = 7/188 (3%) Frame = +3 Query: 324 ITDKYIFITGCDTGFGNLAARTFDKKGFHVIAACLTES----GSTALKAETSERLHTVLL 491 + K + +TGCD+GFG A+ KGF V A CL + G L + S+RL TV L Sbjct: 53 VGSKAVLVTGCDSGFGFSLAKHLHSKGFLVFAGCLMKDKGHDGVKELDSLNSDRLRTVQL 112 Query: 492 DVTDPENVKRTAQWVKNQVG--EKGLWGLINNAGILGVLAPTDWLTVEDYREPIEVNLFG 665 +V E V++ + V++ + EKG+WGL+NNAGI ++ ++E Y++ EVNL+G Sbjct: 113 NVCSSEEVEKVVEIVRSSLKDPEKGMWGLVNNAGI-STFGEVEFTSLETYKQVAEVNLWG 171 Query: 666 LINVTLNMLPLVKKARGRVINVSSIGGRLAF-XGGGYAPSKYAVESFHDSLRRDMKAFGV 842 + +T + LPL+++A+GRV+N+SS+ GR+A Y +K+ VE+F D LR +M GV Sbjct: 172 TVRMTKSFLPLIRRAKGRVVNISSMLGRMANPARSPYCITKFGVEAFSDCLRYEMYPLGV 231 Query: 843 HVACIEPG 866 V+ +EPG Sbjct: 232 KVSVVEPG 239 >ref|NP_004042.1| 3-hydroxybutyrate dehydrogenase precursor [Homo sapiens] Length = 343 Score = 138 bits (348), Expect = 7e-33 Identities = 75/188 (39%), Positives = 116/188 (61%), Gaps = 7/188 (3%) Frame = +3 Query: 324 ITDKYIFITGCDTGFGNLAARTFDKKGFHVIAACLTES----GSTALKAETSERLHTVLL 491 + K + +TGCD+GFG A+ KGF V A CL + G L + S+RL TV L Sbjct: 53 VGSKAVLVTGCDSGFGFSLAKHLHSKGFLVFAGCLMKDKGHDGVKELDSLNSDRLRTVQL 112 Query: 492 DVTDPENVKRTAQWVKNQVG--EKGLWGLINNAGILGVLAPTDWLTVEDYREPIEVNLFG 665 +V E V++ + V++ + EKG+WGL+NNAGI ++ ++E Y++ EVNL+G Sbjct: 113 NVCSSEEVEKVVEIVRSSLKDPEKGMWGLVNNAGI-STFGEVEFTSLETYKQVAEVNLWG 171 Query: 666 LINVTLNMLPLVKKARGRVINVSSIGGRLAF-XGGGYAPSKYAVESFHDSLRRDMKAFGV 842 + +T + LPL+++A+GRV+N+SS+ GR+A Y +K+ VE+F D LR +M GV Sbjct: 172 TVRMTKSFLPLIRRAKGRVVNISSMLGRMANPARSPYCITKFGVEAFSDCLRYEMYPLGV 231 Query: 843 HVACIEPG 866 V+ +EPG Sbjct: 232 KVSVVEPG 239 >ref|NP_002144.1| hydroxysteroid (17-beta) dehydrogenase 2 [Homo sapiens] Length = 387 Score = 137 bits (346), Expect = 1e-32 Identities = 82/231 (35%), Positives = 127/231 (54%), Gaps = 11/231 (4%) Frame = +3 Query: 252 FWLLALL-ILCGFLWNYKRQLKIADITDKYIFITGCDTGFGNLAARTFDKKGFHVIAACL 428 FW L L + C ++ Y ++ + K + +TG D G G+ + D+ GF V A L Sbjct: 55 FWGLILFSVSCFLMYTYLSGQELLPVDQKAVLVTGGDCGLGHALCKYLDELGFTVFAGVL 114 Query: 429 TESGSTA--LKAETSERLHTVLLDVTDPENVKRTAQWVKNQVGEKGLWGLINNAGILGVL 602 E+G A L+ S RL + +D+T P +K V + ++GLW +INNAG+LG Sbjct: 115 NENGPGAEELRRTCSPRLSVLQMDITKPVQIKDAYSKVAAMLQDRGLWAVINNAGVLGFP 174 Query: 603 APTDWLTVEDYREPIEVNLFGLINVTLNMLPLVKKARGRVINVSSIGG-----RLAFXGG 767 + L + DY++ + VN FG + VT LPL++K++GR++NVSS+GG RLA Sbjct: 175 TDGELLLMTDYKQCMAVNFFGTVEVTKTFLPLLRKSKGRLVNVSSMGGGAPMERLA---- 230 Query: 768 GYAPSKYAVESFHDSLRRDMKAFGVHVACIEPGMVKT---GLADQ*RRLKK 911 Y SK AV F +R ++ +G+ VA I+PG T G +D+ +L+K Sbjct: 231 SYGSSKAAVTMFSSVMRLELSKWGIKVASIQPGGFLTNIAGTSDKWEKLEK 281 Database: RefSeqHP Posted date: Aug 2, 2006 12:57 AM Number of letters in database: 17,774,539 Number of sequences in database: 39,411 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 40,354,037 Number of Sequences: 39411 Number of extensions: 1008091 Number of successful extensions: 2632 Number of sequences better than 1.0e-05: 10 Number of HSP's better than 0.0 without gapping: 2400 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2585 length of database: 17,774,539 effective HSP length: 103 effective length of database: 13,715,206 effective search space used: 3305364646 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
Search to RefSeqMP
BLASTX 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= 20060611S-027485 (1036 letters) Database: RefSeqMP 45,328 sequences; 21,768,885 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Alignment gi|NP_780721.1| NADP-dependent retinol dehydrogenase/reductase ... 400 e-112 Alignment gi|NP_536684.1| retinol dehydrogenase 1 (all trans) [Mus musculus] 239 4e-63 Alignment gi|NP_033066.1| retinol dehydrogenase 16 [Mus musculus] 238 6e-63 Alignment gi|NP_694773.1| retinol dehydrogenase 9 [Mus musculus] 238 1e-62 Alignment gi|NP_059501.1| retinol dehydrogenase 7 [Mus musculus] 234 8e-62 Alignment gi|NP_671755.1| retinol dehydrogenase similar protein 2 [Mus mu... 233 2e-61 Alignment gi|NP_081577.1| retinol dehydrogenase similar protein [Mus musc... 233 2e-61 Alignment gi|NP_663399.1| cis-retinol/3alpha hydroxysterol short-chain de... 231 9e-61 Alignment gi|NP_038814.1| hydroxysteroid (17-beta) dehydrogenase 9 [Mus m... 231 1e-60 Alignment gi|NP_598767.1| retinol dehydrogenase 5 [Mus musculus] 229 4e-60 >ref|NP_780721.1| NADP-dependent retinol dehydrogenase/reductase [Mus musculus] Length = 319 Score = 400 bits (1029), Expect = e-112 Identities = 197/236 (83%), Positives = 211/236 (89%), Gaps = 4/236 (1%) Frame = +3 Query: 246 MLFWLLALLILCGFLWNYKRQLKIADITDKYIFITGCDTGFGNLAARTFDKKGFHVIAAC 425 MLFWLLALL LC FLWNYK QLKIADI DKY+FITGCDTGFGNLAARTFDKKGF VIAAC Sbjct: 1 MLFWLLALLFLCAFLWNYKGQLKIADIADKYVFITGCDTGFGNLAARTFDKKGFRVIAAC 60 Query: 426 LTESGSTALKAETSERLHTVLLDVTDPENVKRTAQWVKNQVGEKGLWGLINNAGILGVLA 605 LTESGS ALKA+TSERLHTVLLDVTDPENVK+TAQWVK+ VGEKGLWGLINNAG+LGVLA Sbjct: 61 LTESGSAALKAKTSERLHTVLLDVTDPENVKKTAQWVKSHVGEKGLWGLINNAGVLGVLA 120 Query: 606 PTDWLTVEDYREPIEVNLFGLINVTLNMLPLVKKARGRVINVSSIGGRLAFXGGGYAPSK 785 PTDWLTV+DYREPIEVNLFGLINVTLNMLPLVKKARGRVINVSSIGGRLAF GGGY PSK Sbjct: 121 PTDWLTVDDYREPIEVNLFGLINVTLNMLPLVKKARGRVINVSSIGGRLAFGGGGYTPSK 180 Query: 786 YAVESFHDSLRRDMKAFGVHVACIEPGMVKTGLADQ*RRLKKT----RHLGSSVSR 941 YAVE F+DSLRRDMKAFGVHV+CIEPG+ KT LAD + +K +HL + + Sbjct: 181 YAVEGFNDSLRRDMKAFGVHVSCIEPGLFKTELADPIKTTEKKLAIWKHLSPDIKQ 236 >ref|NP_536684.1| retinol dehydrogenase 1 (all trans) [Mus musculus] Length = 317 Score = 239 bits (609), Expect = 4e-63 Identities = 117/231 (50%), Positives = 160/231 (69%) Frame = +3 Query: 246 MLFWLLALLILCGFLWNYKRQLKIADITDKYIFITGCDTGFGNLAARTFDKKGFHVIAAC 425 M +L+AL+ L L ++ + ++ + KY+FITGCD+GFGNL AR D++G V+AAC Sbjct: 1 MWLYLVALVGLWTLLRFFRERQVVSHLQVKYVFITGCDSGFGNLLARQLDRRGMRVLAAC 60 Query: 426 LTESGSTALKAETSERLHTVLLDVTDPENVKRTAQWVKNQVGEKGLWGLINNAGILGVLA 605 LTE G+ L+ +TS+RL TV+LDVT E++ QWVK +VG +GLWGL+NNAGI Sbjct: 61 LTEKGAEELRNKTSDRLETVILDVTKTESIVAATQWVKERVGNRGLWGLVNNAGISTPSG 120 Query: 606 PTDWLTVEDYREPIEVNLFGLINVTLNMLPLVKKARGRVINVSSIGGRLAFXGGGYAPSK 785 P +W+ +D+ ++VNL G+I VTL+MLPLV+KARGRV+NVSS+ GR++F GGGY SK Sbjct: 121 PNEWMKKQDFARVLDVNLLGMIEVTLSMLPLVRKARGRVVNVSSVMGRMSFFGGGYCISK 180 Query: 786 YAVESFHDSLRRDMKAFGVHVACIEPGMVKTGLADQ*RRLKKTRHLGSSVS 938 Y VE+F DSLRR++ FGV VA IEPG KT + R T+ + S Sbjct: 181 YGVEAFSDSLRRELSYFGVKVAIIEPGGFKTCVTSSDRLSSNTKMIWDKAS 231 >ref|NP_033066.1| retinol dehydrogenase 16 [Mus musculus] Length = 317 Score = 238 bits (608), Expect = 6e-63 Identities = 117/231 (50%), Positives = 158/231 (68%) Frame = +3 Query: 246 MLFWLLALLILCGFLWNYKRQLKIADITDKYIFITGCDTGFGNLAARTFDKKGFHVIAAC 425 M +L+AL+ L L ++ + ++ + DKY+FITGCD+GFG L AR D++G V+AAC Sbjct: 1 MWLYLVALVGLWTLLRFFRVRQVVSHLQDKYVFITGCDSGFGTLLARQLDRRGMRVLAAC 60 Query: 426 LTESGSTALKAETSERLHTVLLDVTDPENVKRTAQWVKNQVGEKGLWGLINNAGILGVLA 605 LTE G+ L+ +TS+RL TV+LDVT E++ QWVK VG +GLWGL+NNAGI Sbjct: 61 LTEKGAEELRNKTSDRLETVILDVTKTESIVTATQWVKEHVGNRGLWGLVNNAGISTPSG 120 Query: 606 PTDWLTVEDYREPIEVNLFGLINVTLNMLPLVKKARGRVINVSSIGGRLAFXGGGYAPSK 785 P +W+ +D+ ++VNL G+I VTL+MLPLV+KARGRV+NVSS+ GR++ GGGY SK Sbjct: 121 PNEWMKKQDFAHVLDVNLLGMIEVTLSMLPLVRKARGRVVNVSSVMGRVSLFGGGYCISK 180 Query: 786 YAVESFHDSLRRDMKAFGVHVACIEPGMVKTGLADQ*RRLKKTRHLGSSVS 938 Y VE+F DSLRR++ FGV VA IEPG TG+ R T+ L S Sbjct: 181 YGVEAFSDSLRRELSYFGVKVAIIEPGFFLTGVTSSARLCSNTQMLWDQTS 231 >ref|NP_694773.1| retinol dehydrogenase 9 [Mus musculus] Length = 317 Score = 238 bits (606), Expect = 1e-62 Identities = 118/231 (51%), Positives = 159/231 (68%) Frame = +3 Query: 246 MLFWLLALLILCGFLWNYKRQLKIADITDKYIFITGCDTGFGNLAARTFDKKGFHVIAAC 425 M +L+AL+ L L ++ + ++ + DKY+FITGCD+GFGNL AR D++G V+AAC Sbjct: 1 MWLFLVALVGLWTLLCFFRERQVVSYLQDKYVFITGCDSGFGNLLARQLDRRGMRVLAAC 60 Query: 426 LTESGSTALKAETSERLHTVLLDVTDPENVKRTAQWVKNQVGEKGLWGLINNAGILGVLA 605 LTE G+ L+ +TS+RL TV+LDVT E++ QWVK +VG +GLWGL+NNAGI Sbjct: 61 LTEKGAEELRNKTSDRLETVILDVTKTESIVTATQWVKERVGNRGLWGLVNNAGISIPSG 120 Query: 606 PTDWLTVEDYREPIEVNLFGLINVTLNMLPLVKKARGRVINVSSIGGRLAFXGGGYAPSK 785 P +W+ +D+ ++VNL GLI VTL+MLPLV+KARGRVINV+S+ GR++ GG Y SK Sbjct: 121 PNEWMKKQDFAHVLDVNLLGLIEVTLSMLPLVRKARGRVINVASVLGRVSLCGGAYCISK 180 Query: 786 YAVESFHDSLRRDMKAFGVHVACIEPGMVKTGLADQ*RRLKKTRHLGSSVS 938 Y VE+F DSLRR++ FGV VA IEPG TG+ R T+ L S Sbjct: 181 YGVEAFSDSLRRELSYFGVKVAIIEPGFFLTGVTSSARLCSNTQMLWDQTS 231 >ref|NP_059501.1| retinol dehydrogenase 7 [Mus musculus] Length = 316 Score = 234 bits (598), Expect = 8e-62 Identities = 120/240 (50%), Positives = 164/240 (68%) Frame = +3 Query: 246 MLFWLLALLILCGFLWNYKRQLKIADITDKYIFITGCDTGFGNLAARTFDKKGFHVIAAC 425 M +L+AL+ L L ++ + ++ + DKY+FITGCD+GFGNL AR D++G V+AAC Sbjct: 1 MWLYLVALVGLWTLLRFFRERQVVSHLQDKYVFITGCDSGFGNLLARQLDRRGMRVLAAC 60 Query: 426 LTESGSTALKAETSERLHTVLLDVTDPENVKRTAQWVKNQVGEKGLWGLINNAGILGVLA 605 LTE G+ L+ +TS+RL TV+LDVT E++ QWVK +VG +GLWGL+NNAGI V A Sbjct: 61 LTEKGAEQLRNKTSDRLETVILDVTKTESIVAATQWVKERVGNRGLWGLVNNAGIC-VFA 119 Query: 606 PTDWLTVEDYREPIEVNLFGLINVTLNMLPLVKKARGRVINVSSIGGRLAFXGGGYAPSK 785 +WL ED+ ++VNL G+I VTL+MLPLV+KARGRV+N+SS GR++ GGGY SK Sbjct: 120 INEWLKKEDFANILDVNLLGMIEVTLSMLPLVRKARGRVVNISSSMGRVSLCGGGYCISK 179 Query: 786 YAVESFHDSLRRDMKAFGVHVACIEPGMVKTGLADQ*RRLKKTRHLGSSVSRIRHHMERL 965 Y VE+F DSLRR++ FGV VA IEPG +T + S+ R+ H +E+L Sbjct: 180 YGVEAFSDSLRREISYFGVKVAIIEPGGFRTNV--------------SNYERLSHSIEKL 225 >ref|NP_671755.1| retinol dehydrogenase similar protein 2 [Mus musculus] Length = 318 Score = 233 bits (595), Expect = 2e-61 Identities = 118/232 (50%), Positives = 159/232 (68%), Gaps = 1/232 (0%) Frame = +3 Query: 246 MLFWLLALLILCGFLWNYKRQLKIADITDKYIFITGCDTGFGNLAARTFDKKGFHVIAAC 425 M +L+ L+ L L ++ + ++ + DKY+FITGCD+GFGNL AR D++G V+AAC Sbjct: 1 MWLYLVPLVGLWTLLRFFRERQVVSHLQDKYVFITGCDSGFGNLLARQLDRRGMRVLAAC 60 Query: 426 LTESGSTALKAETSERLHTVLLDVTDPENVKRTAQWVKNQVGEKGLWGLINNAGILGVLA 605 LTE G+ L+ +TS+RL TV+LDVT E++ QWVK +VG +GLWGL+NNAGI L Sbjct: 61 LTEKGAEELRNKTSDRLETVILDVTKTESIVAATQWVKERVGNRGLWGLVNNAGISVPLG 120 Query: 606 PTDWLTVEDYREPIEVNLFGLINVTLNMLPLVKKARGRVINVSSIGGRLAFXG-GGYAPS 782 + W+ +++ ++VNL G+I VTL MLPLV+KARGRV+NVSSI GR++ G GGY S Sbjct: 121 LSQWMNKQNFASVLDVNLLGMIEVTLTMLPLVRKARGRVVNVSSIMGRVSLHGNGGYCIS 180 Query: 783 KYAVESFHDSLRRDMKAFGVHVACIEPGMVKTGLADQ*RRLKKTRHLGSSVS 938 KY VE+F DSLRR++ FGV VA IEPG TG+A R T+ L S Sbjct: 181 KYGVEAFSDSLRRELSYFGVKVAIIEPGFFLTGMASSARLSSNTQMLWDQTS 232 >ref|NP_081577.1| retinol dehydrogenase similar protein [Mus musculus] Length = 313 Score = 233 bits (594), Expect = 2e-61 Identities = 109/193 (56%), Positives = 146/193 (75%) Frame = +3 Query: 315 IADITDKYIFITGCDTGFGNLAARTFDKKGFHVIAACLTESGSTALKAETSERLHTVLLD 494 + ++++KY+FITGCD+GFGNL A+ +G V+AACLTE G+ L +TS +L T LLD Sbjct: 20 VKNLSEKYVFITGCDSGFGNLLAKQLVDRGMKVLAACLTEEGAQKLLQDTSHQLQTFLLD 79 Query: 495 VTDPENVKRTAQWVKNQVGEKGLWGLINNAGILGVLAPTDWLTVEDYREPIEVNLFGLIN 674 VT ENVK AQWV++QVGE+GLW L+NNAG+ P +WLT++D+ + I +NL GLI+ Sbjct: 80 VTKSENVKEAAQWVRDQVGEQGLWALVNNAGVGLPSGPNEWLTIKDFVKVININLVGLID 139 Query: 675 VTLNMLPLVKKARGRVINVSSIGGRLAFXGGGYAPSKYAVESFHDSLRRDMKAFGVHVAC 854 VTLNMLP++KKARGRV+N+SS GGR+A GGGY SK+ VE+F DS+RR++ FGV V+ Sbjct: 140 VTLNMLPMIKKARGRVVNMSSSGGRVAIFGGGYCVSKFGVEAFSDSIRRELHFFGVKVSI 199 Query: 855 IEPGMVKTGLADQ 893 IEPG KT + Q Sbjct: 200 IEPGNYKTSILGQ 212 >ref|NP_663399.1| cis-retinol/3alpha hydroxysterol short-chain dehydrogenase-like [Mus musculus] Length = 318 Score = 231 bits (589), Expect = 9e-61 Identities = 117/232 (50%), Positives = 157/232 (67%), Gaps = 1/232 (0%) Frame = +3 Query: 246 MLFWLLALLILCGFLWNYKRQLKIADITDKYIFITGCDTGFGNLAARTFDKKGFHVIAAC 425 M +++ALL L L ++ + + + DKY+FITGC +GFGNL AR D++G V+AAC Sbjct: 1 MWLYMVALLGLWMLLRFFRERQVVDHLQDKYVFITGCGSGFGNLLARQLDRRGMRVLAAC 60 Query: 426 LTESGSTALKAETSERLHTVLLDVTDPENVKRTAQWVKNQVGEKGLWGLINNAGILGVLA 605 E G+ L+ +TSERL TV+LDVT E++ QWVK +VG +GLWGL+NNAGI Sbjct: 61 RKEEGAEELRRKTSERLETVILDVTKTESIVAATQWVKERVGNRGLWGLVNNAGISVPSG 120 Query: 606 PTDWLTVEDYREPIEVNLFGLINVTLNMLPLVKKARGRVINVSSIGGRLAFXG-GGYAPS 782 P +W+ +D+ ++VNL GLI VTL+MLPLV+KARGRV+NVSSI GR++ G GGY S Sbjct: 121 PNEWMKKQDFASVLDVNLLGLIEVTLSMLPLVRKARGRVVNVSSILGRVSLGGSGGYCIS 180 Query: 783 KYAVESFHDSLRRDMKAFGVHVACIEPGMVKTGLADQ*RRLKKTRHLGSSVS 938 KY +E+F DSLRR+++ FGV VA IEPG TG+A R + L S Sbjct: 181 KYGIEAFSDSLRRELRYFGVKVAIIEPGFFLTGMASSARLCSNIQMLWDQTS 232 >ref|NP_038814.1| hydroxysteroid (17-beta) dehydrogenase 9 [Mus musculus] Length = 317 Score = 231 bits (588), Expect = 1e-60 Identities = 114/224 (50%), Positives = 157/224 (70%) Frame = +3 Query: 246 MLFWLLALLILCGFLWNYKRQLKIADITDKYIFITGCDTGFGNLAARTFDKKGFHVIAAC 425 M F+L+ L+ L L Y+ + ++ + DKY+FITGCD+GFGNL AR D++G V+AAC Sbjct: 1 MWFYLVTLVGLYHLLRWYRERQVVSHLQDKYVFITGCDSGFGNLLARQLDRRGMRVLAAC 60 Query: 426 LTESGSTALKAETSERLHTVLLDVTDPENVKRTAQWVKNQVGEKGLWGLINNAGILGVLA 605 LTE G+ L+ +TS+RL TV+LDVT E++ QWVK +VG++GLWGL+NNAG+L A Sbjct: 61 LTEKGAEELRNKTSDRLETVILDVTKTESIVAATQWVKERVGDRGLWGLVNNAGVLQPFA 120 Query: 606 PTDWLTVEDYREPIEVNLFGLINVTLNMLPLVKKARGRVINVSSIGGRLAFXGGGYAPSK 785 +W EDY +VNL GL VT++ML LVKKARGR++NVSS GR+A GG Y+ SK Sbjct: 121 YIEWYRPEDYMPIFQVNLIGLTQVTISMLFLVKKARGRIVNVSSALGRVALFGGFYSCSK 180 Query: 786 YAVESFHDSLRRDMKAFGVHVACIEPGMVKTGLADQ*RRLKKTR 917 Y VE+F D LR +++ FGV V+ IEPG KT + D +++T+ Sbjct: 181 YGVEAFSDVLRHEVQDFGVKVSIIEPGSFKTEMTDAELTIERTK 224 >ref|NP_598767.1| retinol dehydrogenase 5 [Mus musculus] Length = 318 Score = 229 bits (584), Expect = 4e-60 Identities = 111/210 (52%), Positives = 150/210 (71%), Gaps = 2/210 (0%) Frame = +3 Query: 255 WLLALL--ILCGFLWNYKRQLKIADITDKYIFITGCDTGFGNLAARTFDKKGFHVIAACL 428 WL LL +L LW R + +D +IFITGCD+GFG L A D+KGF V+A CL Sbjct: 2 WLPLLLGALLWAVLW-LLRDRQSLPASDAFIFITGCDSGFGRLLALQLDQKGFQVLAGCL 60 Query: 429 TESGSTALKAETSERLHTVLLDVTDPENVKRTAQWVKNQVGEKGLWGLINNAGILGVLAP 608 T SG+ L+ S RLHT LLD+TDP+NV++ A+WVK +VGE GL+GL+NNAG+ G++ P Sbjct: 61 TPSGAEDLQQMASSRLHTTLLDITDPQNVQQVAKWVKTRVGETGLFGLVNNAGVAGIIGP 120 Query: 609 TDWLTVEDYREPIEVNLFGLINVTLNMLPLVKKARGRVINVSSIGGRLAFXGGGYAPSKY 788 T WLT +D++ + VN G I VTL +LPL+++ARGRV+N++S+ GR+A GGGY SK+ Sbjct: 121 TPWLTQDDFQRVLSVNTLGPIGVTLALLPLLQQARGRVVNITSVLGRIAANGGGYCVSKF 180 Query: 789 AVESFHDSLRRDMKAFGVHVACIEPGMVKT 878 +E+F DSLRRDM FGV V+ +EPG +T Sbjct: 181 GLEAFSDSLRRDMAPFGVQVSIVEPGFFRT 210 Database: RefSeqMP Posted date: Aug 2, 2006 12:58 AM Number of letters in database: 21,768,885 Number of sequences in database: 45,328 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 48,541,713 Number of Sequences: 45328 Number of extensions: 1204104 Number of successful extensions: 3172 Number of sequences better than 1.0e-05: 10 Number of HSP's better than 0.0 without gapping: 2914 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3139 length of database: 21,768,885 effective HSP length: 104 effective length of database: 17,054,773 effective search space used: 4093145520 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
Search to RefSeqCP
BLASTX 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= 20060611S-027485 (1036 letters) Database: RefSeqCP 33,732 sequences; 19,266,565 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Alignment gi|XP_545513.2| PREDICTED: similar to NADP-dependent retinol de... 419 e-117 Alignment gi|XP_858182.1| PREDICTED: similar to microsomal NAD+-dependent... 240 1e-63 Alignment gi|XP_531641.2| PREDICTED: similar to microsomal NAD+-dependent... 240 1e-63 Alignment gi|XP_538239.2| PREDICTED: similar to 3-hydroxysteroid epimeras... 240 1e-63 Alignment gi|XP_858059.1| PREDICTED: similar to 3-hydroxysteroid epimeras... 240 1e-63 Alignment gi|XP_538240.2| PREDICTED: similar to orphan short-chain dehydr... 231 9e-61 Alignment gi|XP_538220.2| PREDICTED: similar to 11-cis retinol dehydrogen... 225 6e-59 Alignment gi|XP_545160.2| PREDICTED: similar to 3-hydroxybutyrate dehydro... 139 6e-33 Alignment gi|XP_546810.2| PREDICTED: similar to hydroxysteroid (17-beta) ... 134 2e-31 Alignment gi|XP_853935.1| PREDICTED: similar to Corticosteroid 11-beta-de... 117 2e-26 >ref|XP_545513.2| PREDICTED: similar to NADP-dependent retinol dehydrogenase/reductase [Canis familiaris] Length = 753 Score = 419 bits (1077), Expect = e-117 Identities = 205/249 (82%), Positives = 223/249 (89%), Gaps = 4/249 (1%) Frame = +3 Query: 207 SRKKHPCHTQGKKMLFWLLALLILCGFLWNYKRQLKIADITDKYIFITGCDTGFGNLAAR 386 ++K+ GK+M FW+LALLILCGFLWNYKRQLKIADITDKYIFITGCDTGFGNLAAR Sbjct: 422 TKKEESLSYTGKRMFFWVLALLILCGFLWNYKRQLKIADITDKYIFITGCDTGFGNLAAR 481 Query: 387 TFDKKGFHVIAACLTESGSTALKAETSERLHTVLLDVTDPENVKRTAQWVKNQVGEKGLW 566 TFDKKGFHVIAACLTES STALKAETSERLHTVLLDVTDPENVKRTAQWVKNQVGEKGLW Sbjct: 482 TFDKKGFHVIAACLTESESTALKAETSERLHTVLLDVTDPENVKRTAQWVKNQVGEKGLW 541 Query: 567 GLINNAGILGVLAPTDWLTVEDYREPIEVNLFGLINVTLNMLPLVKKARGRVINVSSIGG 746 GLINNAG+LGVLAPTDWLTVEDYREPIEVNLFGLI+VTLN+LPLVKKARGR+INVSSIGG Sbjct: 542 GLINNAGVLGVLAPTDWLTVEDYREPIEVNLFGLISVTLNLLPLVKKARGRIINVSSIGG 601 Query: 747 RLAFXGGGYAPSKYAVESFHDSLRRDMKAFGVHVACIEPGMVKTGLADQ*RRLKKT---- 914 RLA GGGY PSKYAVE F+DSLRRDMKAFGVHV+CIEPG+ KTGL+D + +K Sbjct: 602 RLAISGGGYTPSKYAVEGFNDSLRRDMKAFGVHVSCIEPGLFKTGLSDPIKATEKKLAIW 661 Query: 915 RHLGSSVSR 941 +HL + + Sbjct: 662 KHLSPDIKQ 670 >ref|XP_858182.1| PREDICTED: similar to microsomal NAD+-dependent retinol dehydrogenase 4 isoform 2 [Canis familiaris] Length = 319 Score = 240 bits (613), Expect = 1e-63 Identities = 117/216 (54%), Positives = 160/216 (74%), Gaps = 2/216 (0%) Frame = +3 Query: 249 LFWLLALLILCGFL--WNYKRQLKIADITDKYIFITGCDTGFGNLAARTFDKKGFHVIAA 422 ++W LA+L+ +L W +RQ+ ++ + DKY+FITGCD+GFGNL AR D +G V+AA Sbjct: 1 MWWSLAVLVGLYYLLRWYRERQV-VSHLQDKYVFITGCDSGFGNLLARQLDLRGLRVLAA 59 Query: 423 CLTESGSTALKAETSERLHTVLLDVTDPENVKRTAQWVKNQVGEKGLWGLINNAGILGVL 602 CLTE G+ L+++TS+RL TV+LDVT E++ QWV+ VG++GLWGL+NNAGI Sbjct: 60 CLTEKGAQQLRSQTSDRLDTVILDVTKTESILAATQWVEEHVGDRGLWGLVNNAGISWPT 119 Query: 603 APTDWLTVEDYREPIEVNLFGLINVTLNMLPLVKKARGRVINVSSIGGRLAFXGGGYAPS 782 AP +WLT +D+ + ++VNL GL+ VTL++L LV+KARGRV+NVSSI GRL+ GGGY S Sbjct: 120 APNEWLTKDDFMKILDVNLLGLVEVTLSLLSLVRKARGRVVNVSSIMGRLSLCGGGYCIS 179 Query: 783 KYAVESFHDSLRRDMKAFGVHVACIEPGMVKTGLAD 890 KY VE+F DSLRR++ FGV VA IEPG T + + Sbjct: 180 KYGVEAFSDSLRRELTYFGVKVAVIEPGYFSTNVTN 215 >ref|XP_531641.2| PREDICTED: similar to microsomal NAD+-dependent retinol dehydrogenase 4 isoform 1 [Canis familiaris] Length = 317 Score = 240 bits (613), Expect = 1e-63 Identities = 117/216 (54%), Positives = 160/216 (74%), Gaps = 2/216 (0%) Frame = +3 Query: 249 LFWLLALLILCGFL--WNYKRQLKIADITDKYIFITGCDTGFGNLAARTFDKKGFHVIAA 422 ++W LA+L+ +L W +RQ+ ++ + DKY+FITGCD+GFGNL AR D +G V+AA Sbjct: 1 MWWSLAVLVGLYYLLRWYRERQV-VSHLQDKYVFITGCDSGFGNLLARQLDLRGLRVLAA 59 Query: 423 CLTESGSTALKAETSERLHTVLLDVTDPENVKRTAQWVKNQVGEKGLWGLINNAGILGVL 602 CLTE G+ L+++TS+RL TV+LDVT E++ QWV+ VG++GLWGL+NNAGI Sbjct: 60 CLTEKGAQQLRSQTSDRLDTVILDVTKTESILAATQWVEEHVGDRGLWGLVNNAGISWPT 119 Query: 603 APTDWLTVEDYREPIEVNLFGLINVTLNMLPLVKKARGRVINVSSIGGRLAFXGGGYAPS 782 AP +WLT +D+ + ++VNL GL+ VTL++L LV+KARGRV+NVSSI GRL+ GGGY S Sbjct: 120 APNEWLTKDDFMKILDVNLLGLVEVTLSLLSLVRKARGRVVNVSSIMGRLSLCGGGYCIS 179 Query: 783 KYAVESFHDSLRRDMKAFGVHVACIEPGMVKTGLAD 890 KY VE+F DSLRR++ FGV VA IEPG T + + Sbjct: 180 KYGVEAFSDSLRRELTYFGVKVAVIEPGYFSTNVTN 215 >ref|XP_538239.2| PREDICTED: similar to 3-hydroxysteroid epimerase isoform 3 [Canis familiaris] Length = 317 Score = 240 bits (613), Expect = 1e-63 Identities = 117/242 (48%), Positives = 169/242 (69%), Gaps = 2/242 (0%) Frame = +3 Query: 249 LFWLLALLI--LCGFLWNYKRQLKIADITDKYIFITGCDTGFGNLAARTFDKKGFHVIAA 422 ++W LA+L+ C W +RQ+ ++ + DKY+FITGCD+GFGNL AR D +G V+AA Sbjct: 1 MWWSLAVLVGLYCLLRWYRERQV-VSHLHDKYVFITGCDSGFGNLLARQLDLRGLRVLAA 59 Query: 423 CLTESGSTALKAETSERLHTVLLDVTDPENVKRTAQWVKNQVGEKGLWGLINNAGILGVL 602 CLTE G+ L+++TS+RL TV+LDVT E++ QWV+ +VG++GLWGL+NNAGI Sbjct: 60 CLTEKGAQQLRSQTSDRLDTVILDVTKTESILAATQWVEERVGDRGLWGLVNNAGIFHPH 119 Query: 603 APTDWLTVEDYREPIEVNLFGLINVTLNMLPLVKKARGRVINVSSIGGRLAFXGGGYAPS 782 ++WL +E Y + +VNL GLI VTL+MLPL+++ARGR++NVSSI GRLAF GG Y S Sbjct: 120 CYSEWLKIEAYVDVFKVNLTGLIEVTLSMLPLLRRARGRIVNVSSILGRLAFFGGAYCSS 179 Query: 783 KYAVESFHDSLRRDMKAFGVHVACIEPGMVKTGLADQ*RRLKKTRHLGSSVSRIRHHMER 962 KY VE+F D+LRR+++ FGV ++ +EPG +TG+ H+ + R++ E Sbjct: 180 KYGVEAFSDTLRRELRHFGVKISIVEPGYFRTGMT----------HVAWCLERLKQAWEE 229 Query: 963 LP 968 +P Sbjct: 230 VP 231 >ref|XP_858059.1| PREDICTED: similar to 3-hydroxysteroid epimerase isoform 4 [Canis familiaris] Length = 323 Score = 240 bits (613), Expect = 1e-63 Identities = 117/242 (48%), Positives = 169/242 (69%), Gaps = 2/242 (0%) Frame = +3 Query: 249 LFWLLALLI--LCGFLWNYKRQLKIADITDKYIFITGCDTGFGNLAARTFDKKGFHVIAA 422 ++W LA+L+ C W +RQ+ ++ + DKY+FITGCD+GFGNL AR D +G V+AA Sbjct: 1 MWWSLAVLVGLYCLLRWYRERQV-VSHLHDKYVFITGCDSGFGNLLARQLDLRGLRVLAA 59 Query: 423 CLTESGSTALKAETSERLHTVLLDVTDPENVKRTAQWVKNQVGEKGLWGLINNAGILGVL 602 CLTE G+ L+++TS+RL TV+LDVT E++ QWV+ +VG++GLWGL+NNAGI Sbjct: 60 CLTEKGAQQLRSQTSDRLDTVILDVTKTESILAATQWVEERVGDRGLWGLVNNAGIFHPH 119 Query: 603 APTDWLTVEDYREPIEVNLFGLINVTLNMLPLVKKARGRVINVSSIGGRLAFXGGGYAPS 782 ++WL +E Y + +VNL GLI VTL+MLPL+++ARGR++NVSSI GRLAF GG Y S Sbjct: 120 CYSEWLKIEAYVDVFKVNLTGLIEVTLSMLPLLRRARGRIVNVSSILGRLAFFGGAYCSS 179 Query: 783 KYAVESFHDSLRRDMKAFGVHVACIEPGMVKTGLADQ*RRLKKTRHLGSSVSRIRHHMER 962 KY VE+F D+LRR+++ FGV ++ +EPG +TG+ H+ + R++ E Sbjct: 180 KYGVEAFSDTLRRELRHFGVKISIVEPGYFRTGMT----------HVAWCLERLKQAWEE 229 Query: 963 LP 968 +P Sbjct: 230 VP 231 >ref|XP_538240.2| PREDICTED: similar to orphan short-chain dehydrogenase / reductase [Canis familiaris] Length = 313 Score = 231 bits (589), Expect = 9e-61 Identities = 116/218 (53%), Positives = 152/218 (69%) Frame = +3 Query: 315 IADITDKYIFITGCDTGFGNLAARTFDKKGFHVIAACLTESGSTALKAETSERLHTVLLD 494 + +++DKY+FITGCD+GFGNL AR +G V+AAC TE G+ L+ +TS RL T LLD Sbjct: 20 VRNLSDKYVFITGCDSGFGNLLARQLVNRGMRVLAACFTEEGAQKLQRDTSYRLQTTLLD 79 Query: 495 VTDPENVKRTAQWVKNQVGEKGLWGLINNAGILGVLAPTDWLTVEDYREPIEVNLFGLIN 674 VT E+++ QWV++QVGE+GLW L+NNAGI P +WLT ED+ + I VNL GLI Sbjct: 80 VTRTESIQAATQWVRDQVGEQGLWALVNNAGIGLPSGPNEWLTKEDFVKVINVNLVGLIE 139 Query: 675 VTLNMLPLVKKARGRVINVSSIGGRLAFXGGGYAPSKYAVESFHDSLRRDMKAFGVHVAC 854 VTL+MLP+VKKARGRV+N+SS GGR+A GGGY SK+ VE+F DS+RR++ FGV V+ Sbjct: 140 VTLHMLPMVKKARGRVVNMSSSGGRVALIGGGYCVSKFGVEAFSDSIRRELHYFGVKVSI 199 Query: 855 IEPGMVKTGLADQ*RRLKKTRHLGSSVSRIRHHMERLP 968 IEPG +T + + VSR+R ERLP Sbjct: 200 IEPGNYRTSILGK----------EDMVSRMRKLWERLP 227 >ref|XP_538220.2| PREDICTED: similar to 11-cis retinol dehydrogenase (11-cis RDH) [Canis familiaris] Length = 339 Score = 225 bits (573), Expect = 6e-59 Identities = 108/219 (49%), Positives = 152/219 (69%) Frame = +3 Query: 222 PCHTQGKKMLFWLLALLILCGFLWNYKRQLKIADITDKYIFITGCDTGFGNLAARTFDKK 401 P G M LL ++L LW + R + +D ++FITGCD+GFG L A D++ Sbjct: 14 PAGHSGSAMWLPLLLGVLLWAVLW-WLRDQQSLPASDAFVFITGCDSGFGRLLALRLDQR 72 Query: 402 GFHVIAACLTESGSTALKAETSERLHTVLLDVTDPENVKRTAQWVKNQVGEKGLWGLINN 581 GF V+A+CLT +G+ L+ S RLHT LLDVT+P++V+R A+WV+ VGE GL+GL+NN Sbjct: 73 GFRVLASCLTPAGAEDLQRVASSRLHTTLLDVTEPQSVQRAAKWVETHVGEAGLFGLVNN 132 Query: 582 AGILGVLAPTDWLTVEDYREPIEVNLFGLINVTLNMLPLVKKARGRVINVSSIGGRLAFX 761 AG+ G++ PT WLT +D+ + VN G I VTL +LPL++++RGRV+N+SS+ GRLA Sbjct: 133 AGVAGIIGPTPWLTQDDFHRVLNVNTLGPIRVTLALLPLLQQSRGRVVNISSVLGRLAAN 192 Query: 762 GGGYAPSKYAVESFHDSLRRDMKAFGVHVACIEPGMVKT 878 GGGY SK+ +E+F DSLRRD+ FGV V+ +EPG +T Sbjct: 193 GGGYCVSKFGLEAFSDSLRRDVAHFGVRVSIVEPGFFRT 231 >ref|XP_545160.2| PREDICTED: similar to 3-hydroxybutyrate dehydrogenase precursor [Canis familiaris] Length = 299 Score = 139 bits (349), Expect = 6e-33 Identities = 76/191 (39%), Positives = 115/191 (60%), Gaps = 7/191 (3%) Frame = +3 Query: 315 IADITDKYIFITGCDTGFGNLAARTFDKKGFHVIAACLTES----GSTALKAETSERLHT 482 + + K + +TGCD+GFG A+ KGF V A CL + G L S+RL T Sbjct: 6 LKQVGSKAVLVTGCDSGFGFSLAKHLHSKGFLVFAGCLMKDQGGDGVKELDGLKSDRLRT 65 Query: 483 VLLDVTDPENVKRTAQWVKNQVG--EKGLWGLINNAGILGVLAPTDWLTVEDYREPIEVN 656 + L+V E V+R + V++ + EKG+WGL+NNAGI ++ ++E Y+E EVN Sbjct: 66 IQLNVCKGEEVERVVEVVRSSLEDPEKGMWGLVNNAGI-STFGEVEFTSMETYKEVAEVN 124 Query: 657 LFGLINVTLNMLPLVKKARGRVINVSSIGGRLAF-XGGGYAPSKYAVESFHDSLRRDMKA 833 L+G + +T LPL+++ARGR++N+SS+ GR+A Y +K+ VE+F D LR +M Sbjct: 125 LWGTVQMTKAFLPLIRRARGRIVNISSMLGRMANPARSPYCITKFGVEAFSDCLRYEMYP 184 Query: 834 FGVHVACIEPG 866 GV V+ +EPG Sbjct: 185 LGVKVSVVEPG 195 >ref|XP_546810.2| PREDICTED: similar to hydroxysteroid (17-beta) dehydrogenase 2 [Canis familiaris] Length = 382 Score = 134 bits (336), Expect = 2e-31 Identities = 73/217 (33%), Positives = 125/217 (57%), Gaps = 4/217 (1%) Frame = +3 Query: 249 LFWLLALLIL-CGFLWNYKRQLKIADITDKYIFITGCDTGFGNLAARTFDKKGFHVIAAC 425 L W L L L C + Y ++ + K + ITG D+GFG+ ++ D+ GF V Sbjct: 55 LSWGLILFFLSCVLTYTYLSGQELLPVDQKAVLITGGDSGFGHALSKYLDELGFTVFVGV 114 Query: 426 LTESGSTA--LKAETSERLHTVLLDVTDPENVKRTAQWVKNQVGEKGLWGLINNAGILGV 599 L E GS A L+ S+RL + +D+TD + +K V ++ ++GLW ++NNAGI+ + Sbjct: 115 LDEKGSGAEELRRTCSKRLSVLQMDITDQQQIKDAHSKVVEKLQDRGLWAVVNNAGIICL 174 Query: 600 LAPTDWLTVEDYREPIEVNLFGLINVTLNMLPLVKKARGRVINVSSIGGRLAFXG-GGYA 776 A + + + DY++ + VN FG + VT LPL++K++GR++N+SS+ + Y+ Sbjct: 175 PADGELIPMTDYKKCMAVNFFGAVEVTKAFLPLLRKSKGRLVNISSMAAGVPMEKLAAYS 234 Query: 777 PSKYAVESFHDSLRRDMKAFGVHVACIEPGMVKTGLA 887 SK A+ F +R+++ +GV V+ I+PG +T +A Sbjct: 235 SSKAALTMFSAVMRQELSKWGVKVSVIQPGGFRTNIA 271 >ref|XP_853935.1| PREDICTED: similar to Corticosteroid 11-beta-dehydrogenase, isozyme 2 (11-DH2) (11-beta-hydroxysteroid dehydrogenase type 2) (11-beta-HSD2) (NAD-dependent 11-beta-hydroxysteroid dehydrogenase) [Canis familiaris] Length = 323 Score = 117 bits (293), Expect = 2e-26 Identities = 65/178 (36%), Positives = 99/178 (55%), Gaps = 3/178 (1%) Frame = +3 Query: 354 CDTGFGNLAARTFDKKGFHVIAACLTESGSTAL--KAETSERLHTVLLDVTDPENVKRTA 527 CD+GFG A+ D GF V+A L G AL +A S RL + +D+T P ++ R Sbjct: 8 CDSGFGKETAKKLDAMGFTVLATVLELDGPGALELRACCSPRLRLLQMDLTKPADISRAL 67 Query: 528 QWVKNQVGEKGLWGLINNAGILGVLAPTDWLTVEDYREPIEVNLFGLINVTLNMLPLVKK 707 ++ K GLWGL+NNAG V+A + V +R +EVN FG + +T +LPL+++ Sbjct: 68 EFTKAHTSSTGLWGLVNNAGHNDVVADVELSPVATFRSCMEVNFFGALELTKGLLPLLRR 127 Query: 708 ARGRVINVSSIGGRLAFXG-GGYAPSKYAVESFHDSLRRDMKAFGVHVACIEPGMVKT 878 +RGR++ V S G + + Y SK A+ D+ ++ +GV V+ I+PG KT Sbjct: 128 SRGRIVTVGSPAGDMPYPCLAAYGTSKAAMALLMDTFSCELLPWGVKVSVIQPGCFKT 185 Database: RefSeqCP Posted date: Aug 1, 2006 9:25 PM Number of letters in database: 19,266,565 Number of sequences in database: 33,732 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 42,139,544 Number of Sequences: 33732 Number of extensions: 1036190 Number of successful extensions: 2764 Number of sequences better than 1.0e-05: 10 Number of HSP's better than 0.0 without gapping: 2579 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2733 length of database: 19,266,565 effective HSP length: 104 effective length of database: 15,758,437 effective search space used: 3782024880 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)