Animal-Genome cDNA 20060611S-027485


Search to RefSeqSP

BLASTX 2.2.10 [Oct-19-2004]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20060611S-027485
         (1036 letters)

Database: RefSeqSP 
           1040 sequences; 434,620 total letters

Searching...done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_999078.1| hydroxysteroid 11-beta dehydrogenase 2 [Sus scr...   125   2e-30
Alignment   gi|NP_999413.1| 11-beta hydroxysteroid dehydrogenase isoform 1 ...    51   4e-08
Alignment   gi|NP_999238.1| 20-beta-hydroxysteroid dehydrogenase [Sus scrofa]     47   1e-06
Alignment   gi|NP_999184.1| carbonyl reductase/NADP-retinol dehydrogenase [...    46   1e-06

>ref|NP_999078.1| hydroxysteroid 11-beta dehydrogenase 2 [Sus scrofa]
          Length = 400

 Score =  125 bits (314), Expect = 2e-30
 Identities = 75/219 (34%), Positives = 119/219 (54%), Gaps = 6/219 (2%)
 Frame = +3

Query: 240 KKMLFWLLALLILCGFLWNYKRQL---KIADITDKYIFITGCDTGFGNLAARTFDKKGFH 410
           +++L  L AL++L    W    +L   +   +  + + ITGCD+GFG   A+  D  GF 
Sbjct: 49  QRLLPPLAALVVLAAAGWIALSRLARPQRLPVATRAVLITGCDSGFGKATAKKLDAMGFT 108

Query: 411 VIAACLT--ESGSTALKAETSERLHTVLLDVTDPENVKRTAQWVKNQVGEKGLWGLINNA 584
           V+A  L     G+  L+A  S RL  + +D+T P ++ R  ++ K      GLWGL+NNA
Sbjct: 109 VLATVLELDSPGAQELRACCSPRLKLLQMDLTKPADISRVLEFTKVHTASTGLWGLVNNA 168

Query: 585 GILGVLAPTDWLTVEDYREPIEVNLFGLINVTLNMLPLVKKARGRVINVSSIGGRLAFXG 764
           G   ++A  +   V  YR  +EVN FG + +T  +LPL++++ GR++ VSS  G + F  
Sbjct: 169 GHNILVADAELSPVATYRSCMEVNFFGTLEMTKALLPLLRRSSGRIVTVSSPAGDMPFPC 228

Query: 765 -GGYAPSKYAVESFHDSLRRDMKAFGVHVACIEPGMVKT 878
              Y  SK AV    DS   +++ +GV V+ I+P   +T
Sbjct: 229 LSAYGTSKAAVALLMDSFSCELQPWGVKVSVIQPACFRT 267


>ref|NP_999413.1| 11-beta hydroxysteroid dehydrogenase isoform 1 [Sus scrofa]
          Length = 292

 Score = 51.2 bits (121), Expect = 4e-08
 Identities = 55/227 (24%), Positives = 101/227 (44%), Gaps = 11/227 (4%)
 Frame = +3

Query: 240 KKMLFWLLALLILCGFLWNYKRQLKIADITDKYIFITGCDTGFGNLAARTFDKKGFHVIA 419
           KK L  +L +  L  + ++   + +   +  K + +TG   G G   A    + G HV+ 
Sbjct: 5   KKYLLPILGIF-LAYYYYSANEEFRPEMLRGKKVIVTGASKGIGREMAYHLARMGAHVVV 63

Query: 420 ACLTE-------SGSTALKAETSERLHTVLLDVTDPENVKRTAQWVKNQVGEKGLWGLIN 578
              +E       S S  L A ++  +   + D+T  E     A  +       GL  LI 
Sbjct: 64  TARSEETLKKVVSHSLELGASSAHYVAGTMEDMTFAEQFVAKAGKLLG-----GLDMLIL 118

Query: 579 NAGILGVLAPTDWLTVEDYREPIEVNLFGLINVTLNMLPLVKKARGRVINVSSIGGRLAF 758
           N  I      + +  +   R  +EVN    + +++  LP++K++ G ++ VSS  G++A 
Sbjct: 119 NH-ITQAFMTSVYDDIHLVRRSMEVNFLSYVVLSVAALPMLKQSNGSIVVVSSQAGKMAN 177

Query: 759 -XGGGYAPSKYAVESFHDSLRRDMKAFGVHVA---CIEPGMVKTGLA 887
                Y+ SK+A++ F  S+ ++     V+V+   CI  G++ T  A
Sbjct: 178 PLVAPYSASKFALDGFFSSITKEYSVTKVNVSITLCI-LGLIDTDTA 223


>ref|NP_999238.1| 20-beta-hydroxysteroid dehydrogenase [Sus scrofa]
          Length = 289

 Score = 46.6 bits (109), Expect = 1e-06
 Identities = 43/139 (30%), Positives = 68/139 (48%), Gaps = 5/139 (3%)
 Frame = +3

Query: 345 ITGCDTGFGNLAARTFDKK--GFHVIAACLTESGSTALKAETSERLHTVL--LDVTDPEN 512
           +TG + G G    R   ++  G  V+ A     G  A+K   +E L      LD+ D ++
Sbjct: 10  VTGANKGIGFAIVRDLCRQFAGDVVLTARDVARGQAAVKQLQAEGLSPRFHQLDIIDLQS 69

Query: 513 VKRTAQWVKNQVGEKGLWGLINNAGILGVLA-PTDWLTVEDYREPIEVNLFGLINVTLNM 689
           ++    +++ + G  GL  L+NNA I   L  PT +    +    ++ N  G  NV   +
Sbjct: 70  IRALCDFLRKEYG--GLDVLVNNAAIAFQLDNPTPFHIQAELT--MKTNFMGTRNVCTEL 125

Query: 690 LPLVKKARGRVINVSSIGG 746
           LPL+K  +GRV+NVSS  G
Sbjct: 126 LPLIKP-QGRVVNVSSTEG 143


>ref|NP_999184.1| carbonyl reductase/NADP-retinol dehydrogenase [Sus scrofa]
          Length = 260

 Score = 46.2 bits (108), Expect = 1e-06
 Identities = 48/194 (24%), Positives = 83/194 (42%), Gaps = 6/194 (3%)
 Frame = +3

Query: 324 ITDKYIFITGCDTGFGNLAARTFDKKGFHVIAACLTESGS----TALKAETSERLHTVLL 491
           + +K   +T    G G   AR   + G HV+ +   +         L+ E      TV  
Sbjct: 12  LENKVALVTASTDGIGLAIARRLAQDGAHVVVSSRKQENVDRTVATLQGEGLSVTGTVC- 70

Query: 492 DVTDPENVKRTAQWVKNQVGEKGLWGLINNAGILGVLAPTDWLTVEDYREPIEVNLFGLI 671
            V   E+ +R      N  G  G+  L++NA +          T E + + + VN+   +
Sbjct: 71  HVGKAEDRERLVAMAVNLHG--GVDILVSNAAVNPFFGNIIDATEEVWDKILHVNVKATV 128

Query: 672 NVTLNMLP-LVKKARGRVINVSSIGGRLAFXG-GGYAPSKYAVESFHDSLRRDMKAFGVH 845
            +T  ++P + K+  G V+ VSS+G    F   G Y  SK A+     +L  ++    + 
Sbjct: 129 LMTKAVVPEMEKRGGGSVLIVSSVGAYHPFPNLGPYNVSKTALLGLTKNLAVELAPRNIR 188

Query: 846 VACIEPGMVKTGLA 887
           V C+ PG++KT  +
Sbjct: 189 VNCLAPGLIKTNFS 202


  Database: RefSeqSP
    Posted date:  Aug 1, 2006  7:14 PM
  Number of letters in database: 434,620
  Number of sequences in database:  1040
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 979,069
Number of Sequences: 1040
Number of extensions: 24387
Number of successful extensions: 63
Number of sequences better than 1.0e-05: 4
Number of HSP's better than  0.0 without gapping: 53
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 59
length of database: 434,620
effective HSP length: 77
effective length of database: 354,540
effective search space used: 94662180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

Search to RefSeqBP

BLASTX 2.2.10 [Oct-19-2004]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20060611S-027485
         (1036 letters)

Database: RefSeqBP 
           33,508 sequences; 16,112,626 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_777158.1| NADP-dependent retinol dehydrogenase/reductase ...   414   e-116
Alignment   gi|XP_879080.1| PREDICTED: similar to microsomal NAD+-dependent...   239   3e-63
Alignment   gi|XP_878985.1| PREDICTED: similar to microsomal NAD+-dependent...   239   3e-63
Alignment   gi|XP_878888.1| PREDICTED: similar to microsomal NAD+-dependent...   239   3e-63
Alignment   gi|XP_878794.1| PREDICTED: similar to microsomal NAD+-dependent...   239   3e-63
Alignment   gi|XP_869667.1| PREDICTED: similar to microsomal NAD+-dependent...   239   3e-63
Alignment   gi|XP_583421.2| PREDICTED: similar to orphan short-chain dehydr...   226   3e-59
Alignment   gi|NP_001030472.1| hypothetical protein LOC533086 [Bos taurus]       224   7e-59
Alignment   gi|XP_601132.2| PREDICTED: similar to microsomal NAD+-dependent...   224   7e-59
Alignment   gi|NP_776591.1| retinol dehydrogenase 5 (11-cis and 9-cis) [Bos...   215   5e-56

>ref|NP_777158.1| NADP-dependent retinol dehydrogenase/reductase [Bos taurus]
          Length = 319

 Score =  414 bits (1063), Expect = e-116
 Identities = 203/236 (86%), Positives = 216/236 (91%), Gaps = 4/236 (1%)
 Frame = +3

Query: 246 MLFWLLALLILCGFLWNYKRQLKIADITDKYIFITGCDTGFGNLAARTFDKKGFHVIAAC 425
           MLFWLL LLILCGFLWNYKRQLKIA+ITDKYIFITGCDTGFGNLAARTFDKKGFHVIAAC
Sbjct: 1   MLFWLLVLLILCGFLWNYKRQLKIANITDKYIFITGCDTGFGNLAARTFDKKGFHVIAAC 60

Query: 426 LTESGSTALKAETSERLHTVLLDVTDPENVKRTAQWVKNQVGEKGLWGLINNAGILGVLA 605
           LTESGSTALKAETSERLHTVLLDVTDPENVKR AQWVKNQVGEKGLWGLINNAGILGVLA
Sbjct: 61  LTESGSTALKAETSERLHTVLLDVTDPENVKRAAQWVKNQVGEKGLWGLINNAGILGVLA 120

Query: 606 PTDWLTVEDYREPIEVNLFGLINVTLNMLPLVKKARGRVINVSSIGGRLAFXGGGYAPSK 785
           P DWLTVEDYREP+EVNLFGLI+VTLNMLPLVKKARGR+INVSSIGGRLAF GGGY+PSK
Sbjct: 121 PNDWLTVEDYREPVEVNLFGLISVTLNMLPLVKKARGRIINVSSIGGRLAFGGGGYSPSK 180

Query: 786 YAVESFHDSLRRDMKAFGVHVACIEPGMVKTGLADQ*RRLKKT----RHLGSSVSR 941
           YAVE F+DSLRRDMKAFGVHVACIEPG+ KT L+D  +  +K     +HL   + +
Sbjct: 181 YAVEGFNDSLRRDMKAFGVHVACIEPGLFKTNLSDPEKTAEKKLAIWKHLSPDIKQ 236


>ref|XP_879080.1| PREDICTED: similar to microsomal NAD+-dependent retinol
           dehydrogenase 4 isoform 5 [Bos taurus]
          Length = 317

 Score =  239 bits (609), Expect = 3e-63
 Identities = 115/213 (53%), Positives = 157/213 (73%)
 Frame = +3

Query: 246 MLFWLLALLILCGFLWNYKRQLKIADITDKYIFITGCDTGFGNLAARTFDKKGFHVIAAC 425
           M  +L+ L+ L   L  Y+ +  ++ + DK++FITGCD+GFGNL AR  D +G  V+AAC
Sbjct: 1   MWLYLVVLVGLYYLLRWYRERQVVSHLRDKFVFITGCDSGFGNLLARQLDLRGLRVLAAC 60

Query: 426 LTESGSTALKAETSERLHTVLLDVTDPENVKRTAQWVKNQVGEKGLWGLINNAGILGVLA 605
           LTE G+  L+ +TS+RL TV+LDVT  ++V    +WVK +VG++GLWGL+NNAGI    A
Sbjct: 61  LTEKGAEQLRNQTSDRLQTVILDVTKTDSVAAATEWVKERVGDRGLWGLVNNAGISTPTA 120

Query: 606 PTDWLTVEDYREPIEVNLFGLINVTLNMLPLVKKARGRVINVSSIGGRLAFXGGGYAPSK 785
           P +WLT +D+ + ++VNL G+I+VTL++LPLV+KARGRV+NVSSI GR+A  GGGY  SK
Sbjct: 121 PNEWLTKQDFMKILDVNLLGVIDVTLSVLPLVRKARGRVVNVSSIMGRVALLGGGYCMSK 180

Query: 786 YAVESFHDSLRRDMKAFGVHVACIEPGMVKTGL 884
           Y VE+F DSLRR++  FGV V  IEPG  KT +
Sbjct: 181 YGVEAFSDSLRRELSYFGVKVVMIEPGYFKTAV 213


>ref|XP_878985.1| PREDICTED: similar to microsomal NAD+-dependent retinol
           dehydrogenase 4 isoform 4 [Bos taurus]
          Length = 317

 Score =  239 bits (609), Expect = 3e-63
 Identities = 115/213 (53%), Positives = 157/213 (73%)
 Frame = +3

Query: 246 MLFWLLALLILCGFLWNYKRQLKIADITDKYIFITGCDTGFGNLAARTFDKKGFHVIAAC 425
           M  +L+ L+ L   L  Y+ +  ++ + DK++FITGCD+GFGNL AR  D +G  V+AAC
Sbjct: 1   MWLYLVVLVGLYYLLRWYRERQVVSHLRDKFVFITGCDSGFGNLLARQLDLRGLRVLAAC 60

Query: 426 LTESGSTALKAETSERLHTVLLDVTDPENVKRTAQWVKNQVGEKGLWGLINNAGILGVLA 605
           LTE G+  L+ +TS+RL TV+LDVT  ++V    +WVK +VG++GLWGL+NNAGI    A
Sbjct: 61  LTEKGAEQLRNQTSDRLQTVILDVTKTDSVAAATEWVKERVGDRGLWGLVNNAGISTPTA 120

Query: 606 PTDWLTVEDYREPIEVNLFGLINVTLNMLPLVKKARGRVINVSSIGGRLAFXGGGYAPSK 785
           P +WLT +D+ + ++VNL G+I+VTL++LPLV+KARGRV+NVSSI GR+A  GGGY  SK
Sbjct: 121 PNEWLTKQDFMKILDVNLLGVIDVTLSVLPLVRKARGRVVNVSSIMGRVALLGGGYCMSK 180

Query: 786 YAVESFHDSLRRDMKAFGVHVACIEPGMVKTGL 884
           Y VE+F DSLRR++  FGV V  IEPG  KT +
Sbjct: 181 YGVEAFSDSLRRELSYFGVKVVMIEPGYFKTAV 213


>ref|XP_878888.1| PREDICTED: similar to microsomal NAD+-dependent retinol
           dehydrogenase 4 isoform 3 [Bos taurus]
          Length = 317

 Score =  239 bits (609), Expect = 3e-63
 Identities = 115/213 (53%), Positives = 157/213 (73%)
 Frame = +3

Query: 246 MLFWLLALLILCGFLWNYKRQLKIADITDKYIFITGCDTGFGNLAARTFDKKGFHVIAAC 425
           M  +L+ L+ L   L  Y+ +  ++ + DK++FITGCD+GFGNL AR  D +G  V+AAC
Sbjct: 1   MWLYLVVLVGLYYLLRWYRERQVVSHLRDKFVFITGCDSGFGNLLARQLDLRGLRVLAAC 60

Query: 426 LTESGSTALKAETSERLHTVLLDVTDPENVKRTAQWVKNQVGEKGLWGLINNAGILGVLA 605
           LTE G+  L+ +TS+RL TV+LDVT  ++V    +WVK +VG++GLWGL+NNAGI    A
Sbjct: 61  LTEKGAEQLRNQTSDRLQTVILDVTKTDSVAAATEWVKERVGDRGLWGLVNNAGISTPTA 120

Query: 606 PTDWLTVEDYREPIEVNLFGLINVTLNMLPLVKKARGRVINVSSIGGRLAFXGGGYAPSK 785
           P +WLT +D+ + ++VNL G+I+VTL++LPLV+KARGRV+NVSSI GR+A  GGGY  SK
Sbjct: 121 PNEWLTKQDFMKILDVNLLGVIDVTLSVLPLVRKARGRVVNVSSIMGRVALLGGGYCMSK 180

Query: 786 YAVESFHDSLRRDMKAFGVHVACIEPGMVKTGL 884
           Y VE+F DSLRR++  FGV V  IEPG  KT +
Sbjct: 181 YGVEAFSDSLRRELSYFGVKVVMIEPGYFKTAV 213


>ref|XP_878794.1| PREDICTED: similar to microsomal NAD+-dependent retinol
           dehydrogenase 4 isoform 2 [Bos taurus]
          Length = 317

 Score =  239 bits (609), Expect = 3e-63
 Identities = 115/213 (53%), Positives = 157/213 (73%)
 Frame = +3

Query: 246 MLFWLLALLILCGFLWNYKRQLKIADITDKYIFITGCDTGFGNLAARTFDKKGFHVIAAC 425
           M  +L+ L+ L   L  Y+ +  ++ + DK++FITGCD+GFGNL AR  D +G  V+AAC
Sbjct: 1   MWLYLVVLVGLYYLLRWYRERQVVSHLRDKFVFITGCDSGFGNLLARQLDLRGLRVLAAC 60

Query: 426 LTESGSTALKAETSERLHTVLLDVTDPENVKRTAQWVKNQVGEKGLWGLINNAGILGVLA 605
           LTE G+  L+ +TS+RL TV+LDVT  ++V    +WVK +VG++GLWGL+NNAGI    A
Sbjct: 61  LTEKGAEQLRNQTSDRLQTVILDVTKTDSVAAATEWVKERVGDRGLWGLVNNAGISTPTA 120

Query: 606 PTDWLTVEDYREPIEVNLFGLINVTLNMLPLVKKARGRVINVSSIGGRLAFXGGGYAPSK 785
           P +WLT +D+ + ++VNL G+I+VTL++LPLV+KARGRV+NVSSI GR+A  GGGY  SK
Sbjct: 121 PNEWLTKQDFMKILDVNLLGVIDVTLSVLPLVRKARGRVVNVSSIMGRVALLGGGYCMSK 180

Query: 786 YAVESFHDSLRRDMKAFGVHVACIEPGMVKTGL 884
           Y VE+F DSLRR++  FGV V  IEPG  KT +
Sbjct: 181 YGVEAFSDSLRRELSYFGVKVVMIEPGYFKTAV 213


>ref|XP_869667.1| PREDICTED: similar to microsomal NAD+-dependent retinol
           dehydrogenase 4 isoform 1 [Bos taurus]
          Length = 317

 Score =  239 bits (609), Expect = 3e-63
 Identities = 115/213 (53%), Positives = 157/213 (73%)
 Frame = +3

Query: 246 MLFWLLALLILCGFLWNYKRQLKIADITDKYIFITGCDTGFGNLAARTFDKKGFHVIAAC 425
           M  +L+ L+ L   L  Y+ +  ++ + DK++FITGCD+GFGNL AR  D +G  V+AAC
Sbjct: 1   MWLYLVVLVGLYYLLRWYRERQVVSHLRDKFVFITGCDSGFGNLLARQLDLRGLRVLAAC 60

Query: 426 LTESGSTALKAETSERLHTVLLDVTDPENVKRTAQWVKNQVGEKGLWGLINNAGILGVLA 605
           LTE G+  L+ +TS+RL TV+LDVT  ++V    +WVK +VG++GLWGL+NNAGI    A
Sbjct: 61  LTEKGAEQLRNQTSDRLQTVILDVTKTDSVAAATEWVKERVGDRGLWGLVNNAGISTPTA 120

Query: 606 PTDWLTVEDYREPIEVNLFGLINVTLNMLPLVKKARGRVINVSSIGGRLAFXGGGYAPSK 785
           P +WLT +D+ + ++VNL G+I+VTL++LPLV+KARGRV+NVSSI GR+A  GGGY  SK
Sbjct: 121 PNEWLTKQDFMKILDVNLLGVIDVTLSVLPLVRKARGRVVNVSSIMGRVALLGGGYCMSK 180

Query: 786 YAVESFHDSLRRDMKAFGVHVACIEPGMVKTGL 884
           Y VE+F DSLRR++  FGV V  IEPG  KT +
Sbjct: 181 YGVEAFSDSLRRELSYFGVKVVMIEPGYFKTAV 213


>ref|XP_583421.2| PREDICTED: similar to orphan short-chain dehydrogenase / reductase
           [Bos taurus]
          Length = 313

 Score =  226 bits (575), Expect = 3e-59
 Identities = 106/190 (55%), Positives = 143/190 (75%)
 Frame = +3

Query: 315 IADITDKYIFITGCDTGFGNLAARTFDKKGFHVIAACLTESGSTALKAETSERLHTVLLD 494
           + +++DKY+FITGCD+GFGNL AR    +G  V+AAC T+ G+  L+ +TS +L T+LLD
Sbjct: 20  VRNLSDKYVFITGCDSGFGNLLARQLVDRGMRVLAACFTKEGAQKLQQDTSYQLQTILLD 79

Query: 495 VTDPENVKRTAQWVKNQVGEKGLWGLINNAGILGVLAPTDWLTVEDYREPIEVNLFGLIN 674
           VT  E++K   QWV++QVGE+GLW L+NNAG+     P +WLT ED+ + I VNL GLI 
Sbjct: 80  VTKTESIKAATQWVRDQVGEQGLWALVNNAGVGLPSGPNEWLTKEDFVKVINVNLVGLIE 139

Query: 675 VTLNMLPLVKKARGRVINVSSIGGRLAFXGGGYAPSKYAVESFHDSLRRDMKAFGVHVAC 854
           VTL+MLP+VKKARGRV+N+SS GGR+A  GGGY  SK+ VE+F DS+RR++  FGV V+ 
Sbjct: 140 VTLHMLPMVKKARGRVVNMSSSGGRVAVIGGGYCISKFGVEAFSDSIRRELHYFGVKVSI 199

Query: 855 IEPGMVKTGL 884
           IEPG  +T +
Sbjct: 200 IEPGNFRTAI 209


>ref|NP_001030472.1| hypothetical protein LOC533086 [Bos taurus]
          Length = 317

 Score =  224 bits (572), Expect = 7e-59
 Identities = 110/215 (51%), Positives = 155/215 (72%), Gaps = 3/215 (1%)
 Frame = +3

Query: 255 WL-LALLILCGFL--WNYKRQLKIADITDKYIFITGCDTGFGNLAARTFDKKGFHVIAAC 425
           WL LA+L+   +L  W  +RQ+ ++ + DK++FITGCD+GFGN  AR  D +G  V+A C
Sbjct: 2   WLYLAVLLGLYYLLRWFRERQV-VSHLQDKFVFITGCDSGFGNQLARQLDLRGLRVLAGC 60

Query: 426 LTESGSTALKAETSERLHTVLLDVTDPENVKRTAQWVKNQVGEKGLWGLINNAGILGVLA 605
           LTE G+  L+ +TS+RL TV+LDVT  E++    +WVK  VG++GLWGL+NNAGI     
Sbjct: 61  LTEQGAEQLRNQTSDRLQTVILDVTKTESIAAATEWVKECVGDRGLWGLVNNAGIFHSHG 120

Query: 606 PTDWLTVEDYREPIEVNLFGLINVTLNMLPLVKKARGRVINVSSIGGRLAFXGGGYAPSK 785
             +W+ +E YR+ + VNL G+I VTL+MLPLV+KA+GR++NVSSI GR+AF G  Y+ SK
Sbjct: 121 YAEWIKIETYRDTLRVNLIGVIEVTLSMLPLVRKAQGRIVNVSSILGRIAFFGAVYSCSK 180

Query: 786 YAVESFHDSLRRDMKAFGVHVACIEPGMVKTGLAD 890
           Y VE+F D LRR+++ FGV V+ +EPG  +T + D
Sbjct: 181 YGVEAFSDILRRELQHFGVKVSMVEPGYFRTAMTD 215


>ref|XP_601132.2| PREDICTED: similar to microsomal NAD+-dependent retinol
           dehydrogenase 4 [Bos taurus]
          Length = 338

 Score =  224 bits (572), Expect = 7e-59
 Identities = 115/237 (48%), Positives = 156/237 (65%), Gaps = 21/237 (8%)
 Frame = +3

Query: 246 MLFWLLALLILCGFLWNYKRQLKIADITDKYIFITGCDTGFGNLAARTFDKKGFHVIAAC 425
           M  +L  LL L  FL  Y+ +  ++ + DK++FITGCD+GFGN  AR  D KG  V+AAC
Sbjct: 1   MWLYLAVLLGLYYFLRWYRERQVVSHLRDKFVFITGCDSGFGNQLARQLDLKGLRVLAAC 60

Query: 426 LTESGSTALKAETSERLHTVLLDVTDPENVKRTAQWVKNQVGEKGLWGLINNAGILGVLA 605
           L + G+  L+ +TS+RL TV+LDVT  E+V    +WVK +VG++GLWGL+NNAGI   +A
Sbjct: 61  LMKQGAEQLRNQTSDRLQTVILDVTKTESVAAATEWVKERVGDRGLWGLVNNAGICTPMA 120

Query: 606 PTDWLTVEDYREPIEVNLFGLINVTLNMLPLVKKARGRVINVSSIGGRLAFXGGGYAPSK 785
           P  WLT +D+ + +EVNL G+I+VTL++LPLV+KARG V+NVSS+ GR+A  GGGY+ SK
Sbjct: 121 PNQWLTKQDFVKILEVNLLGVIDVTLSLLPLVRKARGHVVNVSSVMGRMAVFGGGYSMSK 180

Query: 786 YAVESFHDSL---------------------RRDMKAFGVHVACIEPGMVKTGLADQ 893
           Y VE+F DSL                     RR++  FGV VA IEPG   T +  +
Sbjct: 181 YGVEAFSDSLSSSHLLCMSFDGKHVHVFGIPRRELSYFGVKVAVIEPGYFLTDMTQE 237


>ref|NP_776591.1| retinol dehydrogenase 5 (11-cis and 9-cis) [Bos taurus]
          Length = 319

 Score =  215 bits (547), Expect = 5e-56
 Identities = 99/181 (54%), Positives = 135/181 (74%)
 Frame = +3

Query: 336 YIFITGCDTGFGNLAARTFDKKGFHVIAACLTESGSTALKAETSERLHTVLLDVTDPENV 515
           +IFITGCD+GFG L A   D++GF V+A+CLT SG+  L+   S RLHT LLDVTDP+++
Sbjct: 31  FIFITGCDSGFGRLLALRLDQRGFRVLASCLTPSGAEDLQRVASSRLHTTLLDVTDPQSI 90

Query: 516 KRTAQWVKNQVGEKGLWGLINNAGILGVLAPTDWLTVEDYREPIEVNLFGLINVTLNMLP 695
           ++  +WV+  VGE GL+GL+NNAG+ G++ PT W T ED++  + VN  G I VTL +LP
Sbjct: 91  RQAVKWVETHVGEAGLFGLVNNAGVAGIIGPTPWQTREDFQRVLNVNTLGPIGVTLALLP 150

Query: 696 LVKKARGRVINVSSIGGRLAFXGGGYAPSKYAVESFHDSLRRDMKAFGVHVACIEPGMVK 875
           L+ +ARGRVIN++S+ GRLA  GGGY  SK+ +E+F DSLRRD+  FGV V+ +EPG  +
Sbjct: 151 LLLQARGRVINITSVLGRLAANGGGYCVSKFGLEAFSDSLRRDVAPFGVRVSIVEPGFFR 210

Query: 876 T 878
           T
Sbjct: 211 T 211


  Database: RefSeqBP
    Posted date:  Aug 1, 2006  7:14 PM
  Number of letters in database: 16,112,626
  Number of sequences in database:  33,508
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 35,902,971
Number of Sequences: 33508
Number of extensions: 885905
Number of successful extensions: 2417
Number of sequences better than 1.0e-05: 10
Number of HSP's better than  0.0 without gapping: 2262
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2391
length of database: 16,112,626
effective HSP length: 102
effective length of database: 12,694,810
effective search space used: 3072144020
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

Search to RefSeqHP

BLASTX 2.2.10 [Oct-19-2004]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20060611S-027485
         (1036 letters)

Database: RefSeqHP 
           39,411 sequences; 17,774,539 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_005762.2| NADP-dependent retinol dehydrogenase/reductase ...   394   e-110
Alignment   gi|NP_954674.1| NADP-dependent retinol dehydrogenase/reductase ...   394   e-110
Alignment   gi|NP_003716.2| 3-hydroxysteroid epimerase [Homo sapiens]            235   4e-62
Alignment   gi|NP_003699.2| retinol dehydrogenase 16 [Homo sapiens]              229   3e-60
Alignment   gi|NP_683695.1| orphan short-chain dehydrogenase / reductase [H...   226   3e-59
Alignment   gi|NP_002896.2| retinol dehydrogenase 5 (11-cis and 9-cis) [Hom...   217   1e-56
Alignment   gi|NP_976059.1| 3-hydroxybutyrate dehydrogenase precursor [Homo...   138   7e-33
Alignment   gi|NP_976060.1| 3-hydroxybutyrate dehydrogenase precursor [Homo...   138   7e-33
Alignment   gi|NP_004042.1| 3-hydroxybutyrate dehydrogenase precursor [Homo...   138   7e-33
Alignment   gi|NP_002144.1| hydroxysteroid (17-beta) dehydrogenase 2 [Homo ...   137   1e-32

>ref|NP_005762.2| NADP-dependent retinol dehydrogenase/reductase [Homo sapiens]
          Length = 319

 Score =  394 bits (1011), Expect(2) = e-110
 Identities = 192/222 (86%), Positives = 206/222 (92%)
 Frame = +3

Query: 246 MLFWLLALLILCGFLWNYKRQLKIADITDKYIFITGCDTGFGNLAARTFDKKGFHVIAAC 425
           MLFW+L LLILCGFLW  K +LKI DITDKYIFITGCD+GFGNLAARTFDKKGFHVIAAC
Sbjct: 1   MLFWVLGLLILCGFLWTRKGKLKIEDITDKYIFITGCDSGFGNLAARTFDKKGFHVIAAC 60

Query: 426 LTESGSTALKAETSERLHTVLLDVTDPENVKRTAQWVKNQVGEKGLWGLINNAGILGVLA 605
           LTESGSTALKAETSERL TVLLDVTDPENVKRTAQWVKNQVGEKGLWGLINNAG+ GVLA
Sbjct: 61  LTESGSTALKAETSERLRTVLLDVTDPENVKRTAQWVKNQVGEKGLWGLINNAGVPGVLA 120

Query: 606 PTDWLTVEDYREPIEVNLFGLINVTLNMLPLVKKARGRVINVSSIGGRLAFXGGGYAPSK 785
           PTDWLT+EDYREPIEVNLFGLI+VTLNMLPLVKKA+GRVINVSS+GGRLA  GGGY PSK
Sbjct: 121 PTDWLTLEDYREPIEVNLFGLISVTLNMLPLVKKAQGRVINVSSVGGRLAIVGGGYTPSK 180

Query: 786 YAVESFHDSLRRDMKAFGVHVACIEPGMVKTGLADQ*RRLKK 911
           YAVE F+DSLRRDMKAFGVHV+CIEPG+ KT LAD  + ++K
Sbjct: 181 YAVEGFNDSLRRDMKAFGVHVSCIEPGLFKTNLADPVKVIEK 222



 Score = 25.8 bits (55), Expect(2) = e-110
 Identities = 13/35 (37%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
 Frame = +1

Query: 907  KKLXIWDHLSPE-SDTIWRGYLE-NVKQTEGSNPY 1005
            KKL IW+ LSP+       GY+E ++ + +G+  Y
Sbjct: 222  KKLAIWEQLSPDIKQQYGEGYIEKSLDKLKGNKSY 256


>ref|NP_954674.1| NADP-dependent retinol dehydrogenase/reductase [Homo sapiens]
          Length = 319

 Score =  394 bits (1011), Expect(2) = e-110
 Identities = 192/222 (86%), Positives = 206/222 (92%)
 Frame = +3

Query: 246 MLFWLLALLILCGFLWNYKRQLKIADITDKYIFITGCDTGFGNLAARTFDKKGFHVIAAC 425
           MLFW+L LLILCGFLW  K +LKI DITDKYIFITGCD+GFGNLAARTFDKKGFHVIAAC
Sbjct: 1   MLFWVLGLLILCGFLWTRKGKLKIEDITDKYIFITGCDSGFGNLAARTFDKKGFHVIAAC 60

Query: 426 LTESGSTALKAETSERLHTVLLDVTDPENVKRTAQWVKNQVGEKGLWGLINNAGILGVLA 605
           LTESGSTALKAETSERL TVLLDVTDPENVKRTAQWVKNQVGEKGLWGLINNAG+ GVLA
Sbjct: 61  LTESGSTALKAETSERLRTVLLDVTDPENVKRTAQWVKNQVGEKGLWGLINNAGVPGVLA 120

Query: 606 PTDWLTVEDYREPIEVNLFGLINVTLNMLPLVKKARGRVINVSSIGGRLAFXGGGYAPSK 785
           PTDWLT+EDYREPIEVNLFGLI+VTLNMLPLVKKA+GRVINVSS+GGRLA  GGGY PSK
Sbjct: 121 PTDWLTLEDYREPIEVNLFGLISVTLNMLPLVKKAQGRVINVSSVGGRLAIVGGGYTPSK 180

Query: 786 YAVESFHDSLRRDMKAFGVHVACIEPGMVKTGLADQ*RRLKK 911
           YAVE F+DSLRRDMKAFGVHV+CIEPG+ KT LAD  + ++K
Sbjct: 181 YAVEGFNDSLRRDMKAFGVHVSCIEPGLFKTNLADPVKVIEK 222



 Score = 25.8 bits (55), Expect(2) = e-110
 Identities = 13/35 (37%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
 Frame = +1

Query: 907  KKLXIWDHLSPE-SDTIWRGYLE-NVKQTEGSNPY 1005
            KKL IW+ LSP+       GY+E ++ + +G+  Y
Sbjct: 222  KKLAIWEQLSPDIKQQYGEGYIEKSLDKLKGNKSY 256


>ref|NP_003716.2| 3-hydroxysteroid epimerase [Homo sapiens]
          Length = 317

 Score =  235 bits (600), Expect = 4e-62
 Identities = 113/224 (50%), Positives = 158/224 (70%)
 Frame = +3

Query: 246 MLFWLLALLILCGFLWNYKRQLKIADITDKYIFITGCDTGFGNLAARTFDKKGFHVIAAC 425
           M  +L A + L   L  Y+ +  ++ + DKY+FITGCD+GFGNL AR  D +G  V+AAC
Sbjct: 1   MWLYLAAFVGLYYLLHWYRERQVVSHLQDKYVFITGCDSGFGNLLARQLDARGLRVLAAC 60

Query: 426 LTESGSTALKAETSERLHTVLLDVTDPENVKRTAQWVKNQVGEKGLWGLINNAGILGVLA 605
           LTE G+  L+ +TS+RL TV LDVT  E++    QWVK  VG++GLWGL+NNAGIL  + 
Sbjct: 61  LTEKGAEQLRGQTSDRLETVTLDVTKMESIAAATQWVKEHVGDRGLWGLVNNAGILTPIT 120

Query: 606 PTDWLTVEDYREPIEVNLFGLINVTLNMLPLVKKARGRVINVSSIGGRLAFXGGGYAPSK 785
             +WL  ED    ++VNL G+I VTL+MLPLV++ARGR++NVSSI GR+AF  GGY  SK
Sbjct: 121 LCEWLNTEDSMNMLKVNLIGVIQVTLSMLPLVRRARGRIVNVSSILGRVAFFVGGYCVSK 180

Query: 786 YAVESFHDSLRRDMKAFGVHVACIEPGMVKTGLADQ*RRLKKTR 917
           Y VE+F D LRR+++ FGV ++ +EPG  +TG+ +  + L++ +
Sbjct: 181 YGVEAFSDILRREIQHFGVKISIVEPGYFRTGMTNMTQSLERMK 224


>ref|NP_003699.2| retinol dehydrogenase 16 [Homo sapiens]
          Length = 317

 Score =  229 bits (584), Expect = 3e-60
 Identities = 118/220 (53%), Positives = 157/220 (71%), Gaps = 2/220 (0%)
 Frame = +3

Query: 255 WL-LALLILCGFLWNYKRQLKI-ADITDKYIFITGCDTGFGNLAARTFDKKGFHVIAACL 428
           WL LA+ +   +L ++ R+ ++ + + DKY+FITGCD+GFG L AR  D +G  V+AACL
Sbjct: 2   WLYLAVFVGLYYLLHWYRERQVLSHLRDKYVFITGCDSGFGKLLARQLDARGLRVLAACL 61

Query: 429 TESGSTALKAETSERLHTVLLDVTDPENVKRTAQWVKNQVGEKGLWGLINNAGILGVLAP 608
           TE G+  L+ +TS+RL TV LDVT  E+V   AQWVK  V +KGLWGL+NNAGI    AP
Sbjct: 62  TEKGAEQLRGQTSDRLETVTLDVTKTESVAAAAQWVKECVRDKGLWGLVNNAGISLPTAP 121

Query: 609 TDWLTVEDYREPIEVNLFGLINVTLNMLPLVKKARGRVINVSSIGGRLAFXGGGYAPSKY 788
            + LT +D    ++VNL G+I+VTLN+LPLV++ARGRV+NV S+ GR++  GGGY  SKY
Sbjct: 122 NELLTKQDLLTILDVNLLGVIDVTLNLLPLVRRARGRVVNVFSVMGRVSLFGGGYCISKY 181

Query: 789 AVESFHDSLRRDMKAFGVHVACIEPGMVKTGLADQ*RRLK 908
            VE+F DSLRR++  FGV VA IEPG  KT +  + R LK
Sbjct: 182 GVEAFSDSLRRELSYFGVKVAMIEPGYFKTAVTSKERFLK 221


>ref|NP_683695.1| orphan short-chain dehydrogenase / reductase [Homo sapiens]
          Length = 313

 Score =  226 bits (575), Expect = 3e-59
 Identities = 115/237 (48%), Positives = 160/237 (67%), Gaps = 1/237 (0%)
 Frame = +3

Query: 261 LALLILCGFLWNYKRQLK-IADITDKYIFITGCDTGFGNLAARTFDKKGFHVIAACLTES 437
           +A L    F++ + +    + ++++KY+FITGCD+GFGNL A+    +G  V+AAC TE 
Sbjct: 1   MAALTDLSFMYRWFKNCNLVGNLSEKYVFITGCDSGFGNLLAKQLVDRGMQVLAACFTEE 60

Query: 438 GSTALKAETSERLHTVLLDVTDPENVKRTAQWVKNQVGEKGLWGLINNAGILGVLAPTDW 617
           GS  L+ +TS RL T LLDVT  E++K  AQWV+++VGE+GLW L+NNAG+     P +W
Sbjct: 61  GSQKLQRDTSYRLQTTLLDVTKSESIKAAAQWVRDKVGEQGLWALVNNAGVGLPSGPNEW 120

Query: 618 LTVEDYREPIEVNLFGLINVTLNMLPLVKKARGRVINVSSIGGRLAFXGGGYAPSKYAVE 797
           LT +D+ + I VNL GLI VTL+MLP+VK+ARGRV+N+SS GGR+A  GGGY  SK+ VE
Sbjct: 121 LTKDDFVKVINVNLVGLIEVTLHMLPMVKRARGRVVNMSSSGGRVAVIGGGYCVSKFGVE 180

Query: 798 SFHDSLRRDMKAFGVHVACIEPGMVKTGLADQ*RRLKKTRHLGSSVSRIRHHMERLP 968
           +F DS+RR++  FGV V  IEPG  +T +  +           +  SR+R   ERLP
Sbjct: 181 AFSDSIRRELYYFGVKVCIIEPGNYRTAILGK----------ENLESRMRKLWERLP 227


>ref|NP_002896.2| retinol dehydrogenase 5 (11-cis and 9-cis) [Homo sapiens]
          Length = 318

 Score =  217 bits (552), Expect = 1e-56
 Identities = 105/210 (50%), Positives = 149/210 (70%), Gaps = 2/210 (0%)
 Frame = +3

Query: 255 WLLALL--ILCGFLWNYKRQLKIADITDKYIFITGCDTGFGNLAARTFDKKGFHVIAACL 428
           WL  LL  +L   LW   R  +    ++ ++FITGCD+GFG L A   D++GF V+A+CL
Sbjct: 2   WLPLLLGALLWAVLW-LLRDRQSLPASNAFVFITGCDSGFGRLLALQLDQRGFRVLASCL 60

Query: 429 TESGSTALKAETSERLHTVLLDVTDPENVKRTAQWVKNQVGEKGLWGLINNAGILGVLAP 608
           T SG+  L+   S RLHT LLD+TDP++V++ A+WV+  V E GL+GL+NNAG+ G++ P
Sbjct: 61  TPSGAEDLQRVASSRLHTTLLDITDPQSVQQAAKWVEMHVKEAGLFGLVNNAGVAGIIGP 120

Query: 609 TDWLTVEDYREPIEVNLFGLINVTLNMLPLVKKARGRVINVSSIGGRLAFXGGGYAPSKY 788
           T WLT +D++  + VN  G I VTL +LPL+++ARGRVIN++S+ GRLA  GGGY  SK+
Sbjct: 121 TPWLTRDDFQRVLNVNTMGPIGVTLALLPLLQQARGRVINITSVLGRLAANGGGYCVSKF 180

Query: 789 AVESFHDSLRRDMKAFGVHVACIEPGMVKT 878
            +E+F DSLRRD+  FG+ V+ +EPG  +T
Sbjct: 181 GLEAFSDSLRRDVAHFGIRVSIVEPGFFRT 210


>ref|NP_976059.1| 3-hydroxybutyrate dehydrogenase precursor [Homo sapiens]
          Length = 343

 Score =  138 bits (348), Expect = 7e-33
 Identities = 75/188 (39%), Positives = 116/188 (61%), Gaps = 7/188 (3%)
 Frame = +3

Query: 324 ITDKYIFITGCDTGFGNLAARTFDKKGFHVIAACLTES----GSTALKAETSERLHTVLL 491
           +  K + +TGCD+GFG   A+    KGF V A CL +     G   L +  S+RL TV L
Sbjct: 53  VGSKAVLVTGCDSGFGFSLAKHLHSKGFLVFAGCLMKDKGHDGVKELDSLNSDRLRTVQL 112

Query: 492 DVTDPENVKRTAQWVKNQVG--EKGLWGLINNAGILGVLAPTDWLTVEDYREPIEVNLFG 665
           +V   E V++  + V++ +   EKG+WGL+NNAGI       ++ ++E Y++  EVNL+G
Sbjct: 113 NVCSSEEVEKVVEIVRSSLKDPEKGMWGLVNNAGI-STFGEVEFTSLETYKQVAEVNLWG 171

Query: 666 LINVTLNMLPLVKKARGRVINVSSIGGRLAF-XGGGYAPSKYAVESFHDSLRRDMKAFGV 842
            + +T + LPL+++A+GRV+N+SS+ GR+A      Y  +K+ VE+F D LR +M   GV
Sbjct: 172 TVRMTKSFLPLIRRAKGRVVNISSMLGRMANPARSPYCITKFGVEAFSDCLRYEMYPLGV 231

Query: 843 HVACIEPG 866
            V+ +EPG
Sbjct: 232 KVSVVEPG 239


>ref|NP_976060.1| 3-hydroxybutyrate dehydrogenase precursor [Homo sapiens]
          Length = 343

 Score =  138 bits (348), Expect = 7e-33
 Identities = 75/188 (39%), Positives = 116/188 (61%), Gaps = 7/188 (3%)
 Frame = +3

Query: 324 ITDKYIFITGCDTGFGNLAARTFDKKGFHVIAACLTES----GSTALKAETSERLHTVLL 491
           +  K + +TGCD+GFG   A+    KGF V A CL +     G   L +  S+RL TV L
Sbjct: 53  VGSKAVLVTGCDSGFGFSLAKHLHSKGFLVFAGCLMKDKGHDGVKELDSLNSDRLRTVQL 112

Query: 492 DVTDPENVKRTAQWVKNQVG--EKGLWGLINNAGILGVLAPTDWLTVEDYREPIEVNLFG 665
           +V   E V++  + V++ +   EKG+WGL+NNAGI       ++ ++E Y++  EVNL+G
Sbjct: 113 NVCSSEEVEKVVEIVRSSLKDPEKGMWGLVNNAGI-STFGEVEFTSLETYKQVAEVNLWG 171

Query: 666 LINVTLNMLPLVKKARGRVINVSSIGGRLAF-XGGGYAPSKYAVESFHDSLRRDMKAFGV 842
            + +T + LPL+++A+GRV+N+SS+ GR+A      Y  +K+ VE+F D LR +M   GV
Sbjct: 172 TVRMTKSFLPLIRRAKGRVVNISSMLGRMANPARSPYCITKFGVEAFSDCLRYEMYPLGV 231

Query: 843 HVACIEPG 866
            V+ +EPG
Sbjct: 232 KVSVVEPG 239


>ref|NP_004042.1| 3-hydroxybutyrate dehydrogenase precursor [Homo sapiens]
          Length = 343

 Score =  138 bits (348), Expect = 7e-33
 Identities = 75/188 (39%), Positives = 116/188 (61%), Gaps = 7/188 (3%)
 Frame = +3

Query: 324 ITDKYIFITGCDTGFGNLAARTFDKKGFHVIAACLTES----GSTALKAETSERLHTVLL 491
           +  K + +TGCD+GFG   A+    KGF V A CL +     G   L +  S+RL TV L
Sbjct: 53  VGSKAVLVTGCDSGFGFSLAKHLHSKGFLVFAGCLMKDKGHDGVKELDSLNSDRLRTVQL 112

Query: 492 DVTDPENVKRTAQWVKNQVG--EKGLWGLINNAGILGVLAPTDWLTVEDYREPIEVNLFG 665
           +V   E V++  + V++ +   EKG+WGL+NNAGI       ++ ++E Y++  EVNL+G
Sbjct: 113 NVCSSEEVEKVVEIVRSSLKDPEKGMWGLVNNAGI-STFGEVEFTSLETYKQVAEVNLWG 171

Query: 666 LINVTLNMLPLVKKARGRVINVSSIGGRLAF-XGGGYAPSKYAVESFHDSLRRDMKAFGV 842
            + +T + LPL+++A+GRV+N+SS+ GR+A      Y  +K+ VE+F D LR +M   GV
Sbjct: 172 TVRMTKSFLPLIRRAKGRVVNISSMLGRMANPARSPYCITKFGVEAFSDCLRYEMYPLGV 231

Query: 843 HVACIEPG 866
            V+ +EPG
Sbjct: 232 KVSVVEPG 239


>ref|NP_002144.1| hydroxysteroid (17-beta) dehydrogenase 2 [Homo sapiens]
          Length = 387

 Score =  137 bits (346), Expect = 1e-32
 Identities = 82/231 (35%), Positives = 127/231 (54%), Gaps = 11/231 (4%)
 Frame = +3

Query: 252 FWLLALL-ILCGFLWNYKRQLKIADITDKYIFITGCDTGFGNLAARTFDKKGFHVIAACL 428
           FW L L  + C  ++ Y    ++  +  K + +TG D G G+   +  D+ GF V A  L
Sbjct: 55  FWGLILFSVSCFLMYTYLSGQELLPVDQKAVLVTGGDCGLGHALCKYLDELGFTVFAGVL 114

Query: 429 TESGSTA--LKAETSERLHTVLLDVTDPENVKRTAQWVKNQVGEKGLWGLINNAGILGVL 602
            E+G  A  L+   S RL  + +D+T P  +K     V   + ++GLW +INNAG+LG  
Sbjct: 115 NENGPGAEELRRTCSPRLSVLQMDITKPVQIKDAYSKVAAMLQDRGLWAVINNAGVLGFP 174

Query: 603 APTDWLTVEDYREPIEVNLFGLINVTLNMLPLVKKARGRVINVSSIGG-----RLAFXGG 767
              + L + DY++ + VN FG + VT   LPL++K++GR++NVSS+GG     RLA    
Sbjct: 175 TDGELLLMTDYKQCMAVNFFGTVEVTKTFLPLLRKSKGRLVNVSSMGGGAPMERLA---- 230

Query: 768 GYAPSKYAVESFHDSLRRDMKAFGVHVACIEPGMVKT---GLADQ*RRLKK 911
            Y  SK AV  F   +R ++  +G+ VA I+PG   T   G +D+  +L+K
Sbjct: 231 SYGSSKAAVTMFSSVMRLELSKWGIKVASIQPGGFLTNIAGTSDKWEKLEK 281


  Database: RefSeqHP
    Posted date:  Aug 2, 2006 12:57 AM
  Number of letters in database: 17,774,539
  Number of sequences in database:  39,411
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 40,354,037
Number of Sequences: 39411
Number of extensions: 1008091
Number of successful extensions: 2632
Number of sequences better than 1.0e-05: 10
Number of HSP's better than  0.0 without gapping: 2400
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2585
length of database: 17,774,539
effective HSP length: 103
effective length of database: 13,715,206
effective search space used: 3305364646
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

Search to RefSeqMP

BLASTX 2.2.10 [Oct-19-2004]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20060611S-027485
         (1036 letters)

Database: RefSeqMP 
           45,328 sequences; 21,768,885 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_780721.1| NADP-dependent retinol dehydrogenase/reductase ...   400   e-112
Alignment   gi|NP_536684.1| retinol dehydrogenase 1 (all trans) [Mus musculus]   239   4e-63
Alignment   gi|NP_033066.1| retinol dehydrogenase 16 [Mus musculus]              238   6e-63
Alignment   gi|NP_694773.1| retinol dehydrogenase 9 [Mus musculus]               238   1e-62
Alignment   gi|NP_059501.1| retinol dehydrogenase 7 [Mus musculus]               234   8e-62
Alignment   gi|NP_671755.1| retinol dehydrogenase similar protein 2 [Mus mu...   233   2e-61
Alignment   gi|NP_081577.1| retinol dehydrogenase similar protein [Mus musc...   233   2e-61
Alignment   gi|NP_663399.1| cis-retinol/3alpha hydroxysterol short-chain de...   231   9e-61
Alignment   gi|NP_038814.1| hydroxysteroid (17-beta) dehydrogenase 9 [Mus m...   231   1e-60
Alignment   gi|NP_598767.1| retinol dehydrogenase 5 [Mus musculus]               229   4e-60

>ref|NP_780721.1| NADP-dependent retinol dehydrogenase/reductase [Mus musculus]
          Length = 319

 Score =  400 bits (1029), Expect = e-112
 Identities = 197/236 (83%), Positives = 211/236 (89%), Gaps = 4/236 (1%)
 Frame = +3

Query: 246 MLFWLLALLILCGFLWNYKRQLKIADITDKYIFITGCDTGFGNLAARTFDKKGFHVIAAC 425
           MLFWLLALL LC FLWNYK QLKIADI DKY+FITGCDTGFGNLAARTFDKKGF VIAAC
Sbjct: 1   MLFWLLALLFLCAFLWNYKGQLKIADIADKYVFITGCDTGFGNLAARTFDKKGFRVIAAC 60

Query: 426 LTESGSTALKAETSERLHTVLLDVTDPENVKRTAQWVKNQVGEKGLWGLINNAGILGVLA 605
           LTESGS ALKA+TSERLHTVLLDVTDPENVK+TAQWVK+ VGEKGLWGLINNAG+LGVLA
Sbjct: 61  LTESGSAALKAKTSERLHTVLLDVTDPENVKKTAQWVKSHVGEKGLWGLINNAGVLGVLA 120

Query: 606 PTDWLTVEDYREPIEVNLFGLINVTLNMLPLVKKARGRVINVSSIGGRLAFXGGGYAPSK 785
           PTDWLTV+DYREPIEVNLFGLINVTLNMLPLVKKARGRVINVSSIGGRLAF GGGY PSK
Sbjct: 121 PTDWLTVDDYREPIEVNLFGLINVTLNMLPLVKKARGRVINVSSIGGRLAFGGGGYTPSK 180

Query: 786 YAVESFHDSLRRDMKAFGVHVACIEPGMVKTGLADQ*RRLKKT----RHLGSSVSR 941
           YAVE F+DSLRRDMKAFGVHV+CIEPG+ KT LAD  +  +K     +HL   + +
Sbjct: 181 YAVEGFNDSLRRDMKAFGVHVSCIEPGLFKTELADPIKTTEKKLAIWKHLSPDIKQ 236


>ref|NP_536684.1| retinol dehydrogenase 1 (all trans) [Mus musculus]
          Length = 317

 Score =  239 bits (609), Expect = 4e-63
 Identities = 117/231 (50%), Positives = 160/231 (69%)
 Frame = +3

Query: 246 MLFWLLALLILCGFLWNYKRQLKIADITDKYIFITGCDTGFGNLAARTFDKKGFHVIAAC 425
           M  +L+AL+ L   L  ++ +  ++ +  KY+FITGCD+GFGNL AR  D++G  V+AAC
Sbjct: 1   MWLYLVALVGLWTLLRFFRERQVVSHLQVKYVFITGCDSGFGNLLARQLDRRGMRVLAAC 60

Query: 426 LTESGSTALKAETSERLHTVLLDVTDPENVKRTAQWVKNQVGEKGLWGLINNAGILGVLA 605
           LTE G+  L+ +TS+RL TV+LDVT  E++    QWVK +VG +GLWGL+NNAGI     
Sbjct: 61  LTEKGAEELRNKTSDRLETVILDVTKTESIVAATQWVKERVGNRGLWGLVNNAGISTPSG 120

Query: 606 PTDWLTVEDYREPIEVNLFGLINVTLNMLPLVKKARGRVINVSSIGGRLAFXGGGYAPSK 785
           P +W+  +D+   ++VNL G+I VTL+MLPLV+KARGRV+NVSS+ GR++F GGGY  SK
Sbjct: 121 PNEWMKKQDFARVLDVNLLGMIEVTLSMLPLVRKARGRVVNVSSVMGRMSFFGGGYCISK 180

Query: 786 YAVESFHDSLRRDMKAFGVHVACIEPGMVKTGLADQ*RRLKKTRHLGSSVS 938
           Y VE+F DSLRR++  FGV VA IEPG  KT +    R    T+ +    S
Sbjct: 181 YGVEAFSDSLRRELSYFGVKVAIIEPGGFKTCVTSSDRLSSNTKMIWDKAS 231


>ref|NP_033066.1| retinol dehydrogenase 16 [Mus musculus]
          Length = 317

 Score =  238 bits (608), Expect = 6e-63
 Identities = 117/231 (50%), Positives = 158/231 (68%)
 Frame = +3

Query: 246 MLFWLLALLILCGFLWNYKRQLKIADITDKYIFITGCDTGFGNLAARTFDKKGFHVIAAC 425
           M  +L+AL+ L   L  ++ +  ++ + DKY+FITGCD+GFG L AR  D++G  V+AAC
Sbjct: 1   MWLYLVALVGLWTLLRFFRVRQVVSHLQDKYVFITGCDSGFGTLLARQLDRRGMRVLAAC 60

Query: 426 LTESGSTALKAETSERLHTVLLDVTDPENVKRTAQWVKNQVGEKGLWGLINNAGILGVLA 605
           LTE G+  L+ +TS+RL TV+LDVT  E++    QWVK  VG +GLWGL+NNAGI     
Sbjct: 61  LTEKGAEELRNKTSDRLETVILDVTKTESIVTATQWVKEHVGNRGLWGLVNNAGISTPSG 120

Query: 606 PTDWLTVEDYREPIEVNLFGLINVTLNMLPLVKKARGRVINVSSIGGRLAFXGGGYAPSK 785
           P +W+  +D+   ++VNL G+I VTL+MLPLV+KARGRV+NVSS+ GR++  GGGY  SK
Sbjct: 121 PNEWMKKQDFAHVLDVNLLGMIEVTLSMLPLVRKARGRVVNVSSVMGRVSLFGGGYCISK 180

Query: 786 YAVESFHDSLRRDMKAFGVHVACIEPGMVKTGLADQ*RRLKKTRHLGSSVS 938
           Y VE+F DSLRR++  FGV VA IEPG   TG+    R    T+ L    S
Sbjct: 181 YGVEAFSDSLRRELSYFGVKVAIIEPGFFLTGVTSSARLCSNTQMLWDQTS 231


>ref|NP_694773.1| retinol dehydrogenase 9 [Mus musculus]
          Length = 317

 Score =  238 bits (606), Expect = 1e-62
 Identities = 118/231 (51%), Positives = 159/231 (68%)
 Frame = +3

Query: 246 MLFWLLALLILCGFLWNYKRQLKIADITDKYIFITGCDTGFGNLAARTFDKKGFHVIAAC 425
           M  +L+AL+ L   L  ++ +  ++ + DKY+FITGCD+GFGNL AR  D++G  V+AAC
Sbjct: 1   MWLFLVALVGLWTLLCFFRERQVVSYLQDKYVFITGCDSGFGNLLARQLDRRGMRVLAAC 60

Query: 426 LTESGSTALKAETSERLHTVLLDVTDPENVKRTAQWVKNQVGEKGLWGLINNAGILGVLA 605
           LTE G+  L+ +TS+RL TV+LDVT  E++    QWVK +VG +GLWGL+NNAGI     
Sbjct: 61  LTEKGAEELRNKTSDRLETVILDVTKTESIVTATQWVKERVGNRGLWGLVNNAGISIPSG 120

Query: 606 PTDWLTVEDYREPIEVNLFGLINVTLNMLPLVKKARGRVINVSSIGGRLAFXGGGYAPSK 785
           P +W+  +D+   ++VNL GLI VTL+MLPLV+KARGRVINV+S+ GR++  GG Y  SK
Sbjct: 121 PNEWMKKQDFAHVLDVNLLGLIEVTLSMLPLVRKARGRVINVASVLGRVSLCGGAYCISK 180

Query: 786 YAVESFHDSLRRDMKAFGVHVACIEPGMVKTGLADQ*RRLKKTRHLGSSVS 938
           Y VE+F DSLRR++  FGV VA IEPG   TG+    R    T+ L    S
Sbjct: 181 YGVEAFSDSLRRELSYFGVKVAIIEPGFFLTGVTSSARLCSNTQMLWDQTS 231


>ref|NP_059501.1| retinol dehydrogenase 7 [Mus musculus]
          Length = 316

 Score =  234 bits (598), Expect = 8e-62
 Identities = 120/240 (50%), Positives = 164/240 (68%)
 Frame = +3

Query: 246 MLFWLLALLILCGFLWNYKRQLKIADITDKYIFITGCDTGFGNLAARTFDKKGFHVIAAC 425
           M  +L+AL+ L   L  ++ +  ++ + DKY+FITGCD+GFGNL AR  D++G  V+AAC
Sbjct: 1   MWLYLVALVGLWTLLRFFRERQVVSHLQDKYVFITGCDSGFGNLLARQLDRRGMRVLAAC 60

Query: 426 LTESGSTALKAETSERLHTVLLDVTDPENVKRTAQWVKNQVGEKGLWGLINNAGILGVLA 605
           LTE G+  L+ +TS+RL TV+LDVT  E++    QWVK +VG +GLWGL+NNAGI  V A
Sbjct: 61  LTEKGAEQLRNKTSDRLETVILDVTKTESIVAATQWVKERVGNRGLWGLVNNAGIC-VFA 119

Query: 606 PTDWLTVEDYREPIEVNLFGLINVTLNMLPLVKKARGRVINVSSIGGRLAFXGGGYAPSK 785
             +WL  ED+   ++VNL G+I VTL+MLPLV+KARGRV+N+SS  GR++  GGGY  SK
Sbjct: 120 INEWLKKEDFANILDVNLLGMIEVTLSMLPLVRKARGRVVNISSSMGRVSLCGGGYCISK 179

Query: 786 YAVESFHDSLRRDMKAFGVHVACIEPGMVKTGLADQ*RRLKKTRHLGSSVSRIRHHMERL 965
           Y VE+F DSLRR++  FGV VA IEPG  +T +              S+  R+ H +E+L
Sbjct: 180 YGVEAFSDSLRREISYFGVKVAIIEPGGFRTNV--------------SNYERLSHSIEKL 225


>ref|NP_671755.1| retinol dehydrogenase similar protein 2 [Mus musculus]
          Length = 318

 Score =  233 bits (595), Expect = 2e-61
 Identities = 118/232 (50%), Positives = 159/232 (68%), Gaps = 1/232 (0%)
 Frame = +3

Query: 246 MLFWLLALLILCGFLWNYKRQLKIADITDKYIFITGCDTGFGNLAARTFDKKGFHVIAAC 425
           M  +L+ L+ L   L  ++ +  ++ + DKY+FITGCD+GFGNL AR  D++G  V+AAC
Sbjct: 1   MWLYLVPLVGLWTLLRFFRERQVVSHLQDKYVFITGCDSGFGNLLARQLDRRGMRVLAAC 60

Query: 426 LTESGSTALKAETSERLHTVLLDVTDPENVKRTAQWVKNQVGEKGLWGLINNAGILGVLA 605
           LTE G+  L+ +TS+RL TV+LDVT  E++    QWVK +VG +GLWGL+NNAGI   L 
Sbjct: 61  LTEKGAEELRNKTSDRLETVILDVTKTESIVAATQWVKERVGNRGLWGLVNNAGISVPLG 120

Query: 606 PTDWLTVEDYREPIEVNLFGLINVTLNMLPLVKKARGRVINVSSIGGRLAFXG-GGYAPS 782
            + W+  +++   ++VNL G+I VTL MLPLV+KARGRV+NVSSI GR++  G GGY  S
Sbjct: 121 LSQWMNKQNFASVLDVNLLGMIEVTLTMLPLVRKARGRVVNVSSIMGRVSLHGNGGYCIS 180

Query: 783 KYAVESFHDSLRRDMKAFGVHVACIEPGMVKTGLADQ*RRLKKTRHLGSSVS 938
           KY VE+F DSLRR++  FGV VA IEPG   TG+A   R    T+ L    S
Sbjct: 181 KYGVEAFSDSLRRELSYFGVKVAIIEPGFFLTGMASSARLSSNTQMLWDQTS 232


>ref|NP_081577.1| retinol dehydrogenase similar protein [Mus musculus]
          Length = 313

 Score =  233 bits (594), Expect = 2e-61
 Identities = 109/193 (56%), Positives = 146/193 (75%)
 Frame = +3

Query: 315 IADITDKYIFITGCDTGFGNLAARTFDKKGFHVIAACLTESGSTALKAETSERLHTVLLD 494
           + ++++KY+FITGCD+GFGNL A+    +G  V+AACLTE G+  L  +TS +L T LLD
Sbjct: 20  VKNLSEKYVFITGCDSGFGNLLAKQLVDRGMKVLAACLTEEGAQKLLQDTSHQLQTFLLD 79

Query: 495 VTDPENVKRTAQWVKNQVGEKGLWGLINNAGILGVLAPTDWLTVEDYREPIEVNLFGLIN 674
           VT  ENVK  AQWV++QVGE+GLW L+NNAG+     P +WLT++D+ + I +NL GLI+
Sbjct: 80  VTKSENVKEAAQWVRDQVGEQGLWALVNNAGVGLPSGPNEWLTIKDFVKVININLVGLID 139

Query: 675 VTLNMLPLVKKARGRVINVSSIGGRLAFXGGGYAPSKYAVESFHDSLRRDMKAFGVHVAC 854
           VTLNMLP++KKARGRV+N+SS GGR+A  GGGY  SK+ VE+F DS+RR++  FGV V+ 
Sbjct: 140 VTLNMLPMIKKARGRVVNMSSSGGRVAIFGGGYCVSKFGVEAFSDSIRRELHFFGVKVSI 199

Query: 855 IEPGMVKTGLADQ 893
           IEPG  KT +  Q
Sbjct: 200 IEPGNYKTSILGQ 212


>ref|NP_663399.1| cis-retinol/3alpha hydroxysterol short-chain dehydrogenase-like
           [Mus musculus]
          Length = 318

 Score =  231 bits (589), Expect = 9e-61
 Identities = 117/232 (50%), Positives = 157/232 (67%), Gaps = 1/232 (0%)
 Frame = +3

Query: 246 MLFWLLALLILCGFLWNYKRQLKIADITDKYIFITGCDTGFGNLAARTFDKKGFHVIAAC 425
           M  +++ALL L   L  ++ +  +  + DKY+FITGC +GFGNL AR  D++G  V+AAC
Sbjct: 1   MWLYMVALLGLWMLLRFFRERQVVDHLQDKYVFITGCGSGFGNLLARQLDRRGMRVLAAC 60

Query: 426 LTESGSTALKAETSERLHTVLLDVTDPENVKRTAQWVKNQVGEKGLWGLINNAGILGVLA 605
             E G+  L+ +TSERL TV+LDVT  E++    QWVK +VG +GLWGL+NNAGI     
Sbjct: 61  RKEEGAEELRRKTSERLETVILDVTKTESIVAATQWVKERVGNRGLWGLVNNAGISVPSG 120

Query: 606 PTDWLTVEDYREPIEVNLFGLINVTLNMLPLVKKARGRVINVSSIGGRLAFXG-GGYAPS 782
           P +W+  +D+   ++VNL GLI VTL+MLPLV+KARGRV+NVSSI GR++  G GGY  S
Sbjct: 121 PNEWMKKQDFASVLDVNLLGLIEVTLSMLPLVRKARGRVVNVSSILGRVSLGGSGGYCIS 180

Query: 783 KYAVESFHDSLRRDMKAFGVHVACIEPGMVKTGLADQ*RRLKKTRHLGSSVS 938
           KY +E+F DSLRR+++ FGV VA IEPG   TG+A   R     + L    S
Sbjct: 181 KYGIEAFSDSLRRELRYFGVKVAIIEPGFFLTGMASSARLCSNIQMLWDQTS 232


>ref|NP_038814.1| hydroxysteroid (17-beta) dehydrogenase 9 [Mus musculus]
          Length = 317

 Score =  231 bits (588), Expect = 1e-60
 Identities = 114/224 (50%), Positives = 157/224 (70%)
 Frame = +3

Query: 246 MLFWLLALLILCGFLWNYKRQLKIADITDKYIFITGCDTGFGNLAARTFDKKGFHVIAAC 425
           M F+L+ L+ L   L  Y+ +  ++ + DKY+FITGCD+GFGNL AR  D++G  V+AAC
Sbjct: 1   MWFYLVTLVGLYHLLRWYRERQVVSHLQDKYVFITGCDSGFGNLLARQLDRRGMRVLAAC 60

Query: 426 LTESGSTALKAETSERLHTVLLDVTDPENVKRTAQWVKNQVGEKGLWGLINNAGILGVLA 605
           LTE G+  L+ +TS+RL TV+LDVT  E++    QWVK +VG++GLWGL+NNAG+L   A
Sbjct: 61  LTEKGAEELRNKTSDRLETVILDVTKTESIVAATQWVKERVGDRGLWGLVNNAGVLQPFA 120

Query: 606 PTDWLTVEDYREPIEVNLFGLINVTLNMLPLVKKARGRVINVSSIGGRLAFXGGGYAPSK 785
             +W   EDY    +VNL GL  VT++ML LVKKARGR++NVSS  GR+A  GG Y+ SK
Sbjct: 121 YIEWYRPEDYMPIFQVNLIGLTQVTISMLFLVKKARGRIVNVSSALGRVALFGGFYSCSK 180

Query: 786 YAVESFHDSLRRDMKAFGVHVACIEPGMVKTGLADQ*RRLKKTR 917
           Y VE+F D LR +++ FGV V+ IEPG  KT + D    +++T+
Sbjct: 181 YGVEAFSDVLRHEVQDFGVKVSIIEPGSFKTEMTDAELTIERTK 224


>ref|NP_598767.1| retinol dehydrogenase 5 [Mus musculus]
          Length = 318

 Score =  229 bits (584), Expect = 4e-60
 Identities = 111/210 (52%), Positives = 150/210 (71%), Gaps = 2/210 (0%)
 Frame = +3

Query: 255 WLLALL--ILCGFLWNYKRQLKIADITDKYIFITGCDTGFGNLAARTFDKKGFHVIAACL 428
           WL  LL  +L   LW   R  +    +D +IFITGCD+GFG L A   D+KGF V+A CL
Sbjct: 2   WLPLLLGALLWAVLW-LLRDRQSLPASDAFIFITGCDSGFGRLLALQLDQKGFQVLAGCL 60

Query: 429 TESGSTALKAETSERLHTVLLDVTDPENVKRTAQWVKNQVGEKGLWGLINNAGILGVLAP 608
           T SG+  L+   S RLHT LLD+TDP+NV++ A+WVK +VGE GL+GL+NNAG+ G++ P
Sbjct: 61  TPSGAEDLQQMASSRLHTTLLDITDPQNVQQVAKWVKTRVGETGLFGLVNNAGVAGIIGP 120

Query: 609 TDWLTVEDYREPIEVNLFGLINVTLNMLPLVKKARGRVINVSSIGGRLAFXGGGYAPSKY 788
           T WLT +D++  + VN  G I VTL +LPL+++ARGRV+N++S+ GR+A  GGGY  SK+
Sbjct: 121 TPWLTQDDFQRVLSVNTLGPIGVTLALLPLLQQARGRVVNITSVLGRIAANGGGYCVSKF 180

Query: 789 AVESFHDSLRRDMKAFGVHVACIEPGMVKT 878
            +E+F DSLRRDM  FGV V+ +EPG  +T
Sbjct: 181 GLEAFSDSLRRDMAPFGVQVSIVEPGFFRT 210


  Database: RefSeqMP
    Posted date:  Aug 2, 2006 12:58 AM
  Number of letters in database: 21,768,885
  Number of sequences in database:  45,328
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 48,541,713
Number of Sequences: 45328
Number of extensions: 1204104
Number of successful extensions: 3172
Number of sequences better than 1.0e-05: 10
Number of HSP's better than  0.0 without gapping: 2914
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3139
length of database: 21,768,885
effective HSP length: 104
effective length of database: 17,054,773
effective search space used: 4093145520
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

Search to RefSeqCP

BLASTX 2.2.10 [Oct-19-2004]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20060611S-027485
         (1036 letters)

Database: RefSeqCP 
           33,732 sequences; 19,266,565 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|XP_545513.2| PREDICTED: similar to NADP-dependent retinol de...   419   e-117
Alignment   gi|XP_858182.1| PREDICTED: similar to microsomal NAD+-dependent...   240   1e-63
Alignment   gi|XP_531641.2| PREDICTED: similar to microsomal NAD+-dependent...   240   1e-63
Alignment   gi|XP_538239.2| PREDICTED: similar to 3-hydroxysteroid epimeras...   240   1e-63
Alignment   gi|XP_858059.1| PREDICTED: similar to 3-hydroxysteroid epimeras...   240   1e-63
Alignment   gi|XP_538240.2| PREDICTED: similar to orphan short-chain dehydr...   231   9e-61
Alignment   gi|XP_538220.2| PREDICTED: similar to 11-cis retinol dehydrogen...   225   6e-59
Alignment   gi|XP_545160.2| PREDICTED: similar to 3-hydroxybutyrate dehydro...   139   6e-33
Alignment   gi|XP_546810.2| PREDICTED: similar to hydroxysteroid (17-beta) ...   134   2e-31
Alignment   gi|XP_853935.1| PREDICTED: similar to Corticosteroid 11-beta-de...   117   2e-26

>ref|XP_545513.2| PREDICTED: similar to NADP-dependent retinol dehydrogenase/reductase
            [Canis familiaris]
          Length = 753

 Score =  419 bits (1077), Expect = e-117
 Identities = 205/249 (82%), Positives = 223/249 (89%), Gaps = 4/249 (1%)
 Frame = +3

Query: 207  SRKKHPCHTQGKKMLFWLLALLILCGFLWNYKRQLKIADITDKYIFITGCDTGFGNLAAR 386
            ++K+      GK+M FW+LALLILCGFLWNYKRQLKIADITDKYIFITGCDTGFGNLAAR
Sbjct: 422  TKKEESLSYTGKRMFFWVLALLILCGFLWNYKRQLKIADITDKYIFITGCDTGFGNLAAR 481

Query: 387  TFDKKGFHVIAACLTESGSTALKAETSERLHTVLLDVTDPENVKRTAQWVKNQVGEKGLW 566
            TFDKKGFHVIAACLTES STALKAETSERLHTVLLDVTDPENVKRTAQWVKNQVGEKGLW
Sbjct: 482  TFDKKGFHVIAACLTESESTALKAETSERLHTVLLDVTDPENVKRTAQWVKNQVGEKGLW 541

Query: 567  GLINNAGILGVLAPTDWLTVEDYREPIEVNLFGLINVTLNMLPLVKKARGRVINVSSIGG 746
            GLINNAG+LGVLAPTDWLTVEDYREPIEVNLFGLI+VTLN+LPLVKKARGR+INVSSIGG
Sbjct: 542  GLINNAGVLGVLAPTDWLTVEDYREPIEVNLFGLISVTLNLLPLVKKARGRIINVSSIGG 601

Query: 747  RLAFXGGGYAPSKYAVESFHDSLRRDMKAFGVHVACIEPGMVKTGLADQ*RRLKKT---- 914
            RLA  GGGY PSKYAVE F+DSLRRDMKAFGVHV+CIEPG+ KTGL+D  +  +K     
Sbjct: 602  RLAISGGGYTPSKYAVEGFNDSLRRDMKAFGVHVSCIEPGLFKTGLSDPIKATEKKLAIW 661

Query: 915  RHLGSSVSR 941
            +HL   + +
Sbjct: 662  KHLSPDIKQ 670


>ref|XP_858182.1| PREDICTED: similar to microsomal NAD+-dependent retinol
           dehydrogenase 4 isoform 2 [Canis familiaris]
          Length = 319

 Score =  240 bits (613), Expect = 1e-63
 Identities = 117/216 (54%), Positives = 160/216 (74%), Gaps = 2/216 (0%)
 Frame = +3

Query: 249 LFWLLALLILCGFL--WNYKRQLKIADITDKYIFITGCDTGFGNLAARTFDKKGFHVIAA 422
           ++W LA+L+   +L  W  +RQ+ ++ + DKY+FITGCD+GFGNL AR  D +G  V+AA
Sbjct: 1   MWWSLAVLVGLYYLLRWYRERQV-VSHLQDKYVFITGCDSGFGNLLARQLDLRGLRVLAA 59

Query: 423 CLTESGSTALKAETSERLHTVLLDVTDPENVKRTAQWVKNQVGEKGLWGLINNAGILGVL 602
           CLTE G+  L+++TS+RL TV+LDVT  E++    QWV+  VG++GLWGL+NNAGI    
Sbjct: 60  CLTEKGAQQLRSQTSDRLDTVILDVTKTESILAATQWVEEHVGDRGLWGLVNNAGISWPT 119

Query: 603 APTDWLTVEDYREPIEVNLFGLINVTLNMLPLVKKARGRVINVSSIGGRLAFXGGGYAPS 782
           AP +WLT +D+ + ++VNL GL+ VTL++L LV+KARGRV+NVSSI GRL+  GGGY  S
Sbjct: 120 APNEWLTKDDFMKILDVNLLGLVEVTLSLLSLVRKARGRVVNVSSIMGRLSLCGGGYCIS 179

Query: 783 KYAVESFHDSLRRDMKAFGVHVACIEPGMVKTGLAD 890
           KY VE+F DSLRR++  FGV VA IEPG   T + +
Sbjct: 180 KYGVEAFSDSLRRELTYFGVKVAVIEPGYFSTNVTN 215


>ref|XP_531641.2| PREDICTED: similar to microsomal NAD+-dependent retinol
           dehydrogenase 4 isoform 1 [Canis familiaris]
          Length = 317

 Score =  240 bits (613), Expect = 1e-63
 Identities = 117/216 (54%), Positives = 160/216 (74%), Gaps = 2/216 (0%)
 Frame = +3

Query: 249 LFWLLALLILCGFL--WNYKRQLKIADITDKYIFITGCDTGFGNLAARTFDKKGFHVIAA 422
           ++W LA+L+   +L  W  +RQ+ ++ + DKY+FITGCD+GFGNL AR  D +G  V+AA
Sbjct: 1   MWWSLAVLVGLYYLLRWYRERQV-VSHLQDKYVFITGCDSGFGNLLARQLDLRGLRVLAA 59

Query: 423 CLTESGSTALKAETSERLHTVLLDVTDPENVKRTAQWVKNQVGEKGLWGLINNAGILGVL 602
           CLTE G+  L+++TS+RL TV+LDVT  E++    QWV+  VG++GLWGL+NNAGI    
Sbjct: 60  CLTEKGAQQLRSQTSDRLDTVILDVTKTESILAATQWVEEHVGDRGLWGLVNNAGISWPT 119

Query: 603 APTDWLTVEDYREPIEVNLFGLINVTLNMLPLVKKARGRVINVSSIGGRLAFXGGGYAPS 782
           AP +WLT +D+ + ++VNL GL+ VTL++L LV+KARGRV+NVSSI GRL+  GGGY  S
Sbjct: 120 APNEWLTKDDFMKILDVNLLGLVEVTLSLLSLVRKARGRVVNVSSIMGRLSLCGGGYCIS 179

Query: 783 KYAVESFHDSLRRDMKAFGVHVACIEPGMVKTGLAD 890
           KY VE+F DSLRR++  FGV VA IEPG   T + +
Sbjct: 180 KYGVEAFSDSLRRELTYFGVKVAVIEPGYFSTNVTN 215


>ref|XP_538239.2| PREDICTED: similar to 3-hydroxysteroid epimerase isoform 3 [Canis
           familiaris]
          Length = 317

 Score =  240 bits (613), Expect = 1e-63
 Identities = 117/242 (48%), Positives = 169/242 (69%), Gaps = 2/242 (0%)
 Frame = +3

Query: 249 LFWLLALLI--LCGFLWNYKRQLKIADITDKYIFITGCDTGFGNLAARTFDKKGFHVIAA 422
           ++W LA+L+   C   W  +RQ+ ++ + DKY+FITGCD+GFGNL AR  D +G  V+AA
Sbjct: 1   MWWSLAVLVGLYCLLRWYRERQV-VSHLHDKYVFITGCDSGFGNLLARQLDLRGLRVLAA 59

Query: 423 CLTESGSTALKAETSERLHTVLLDVTDPENVKRTAQWVKNQVGEKGLWGLINNAGILGVL 602
           CLTE G+  L+++TS+RL TV+LDVT  E++    QWV+ +VG++GLWGL+NNAGI    
Sbjct: 60  CLTEKGAQQLRSQTSDRLDTVILDVTKTESILAATQWVEERVGDRGLWGLVNNAGIFHPH 119

Query: 603 APTDWLTVEDYREPIEVNLFGLINVTLNMLPLVKKARGRVINVSSIGGRLAFXGGGYAPS 782
             ++WL +E Y +  +VNL GLI VTL+MLPL+++ARGR++NVSSI GRLAF GG Y  S
Sbjct: 120 CYSEWLKIEAYVDVFKVNLTGLIEVTLSMLPLLRRARGRIVNVSSILGRLAFFGGAYCSS 179

Query: 783 KYAVESFHDSLRRDMKAFGVHVACIEPGMVKTGLADQ*RRLKKTRHLGSSVSRIRHHMER 962
           KY VE+F D+LRR+++ FGV ++ +EPG  +TG+           H+   + R++   E 
Sbjct: 180 KYGVEAFSDTLRRELRHFGVKISIVEPGYFRTGMT----------HVAWCLERLKQAWEE 229

Query: 963 LP 968
           +P
Sbjct: 230 VP 231


>ref|XP_858059.1| PREDICTED: similar to 3-hydroxysteroid epimerase isoform 4 [Canis
           familiaris]
          Length = 323

 Score =  240 bits (613), Expect = 1e-63
 Identities = 117/242 (48%), Positives = 169/242 (69%), Gaps = 2/242 (0%)
 Frame = +3

Query: 249 LFWLLALLI--LCGFLWNYKRQLKIADITDKYIFITGCDTGFGNLAARTFDKKGFHVIAA 422
           ++W LA+L+   C   W  +RQ+ ++ + DKY+FITGCD+GFGNL AR  D +G  V+AA
Sbjct: 1   MWWSLAVLVGLYCLLRWYRERQV-VSHLHDKYVFITGCDSGFGNLLARQLDLRGLRVLAA 59

Query: 423 CLTESGSTALKAETSERLHTVLLDVTDPENVKRTAQWVKNQVGEKGLWGLINNAGILGVL 602
           CLTE G+  L+++TS+RL TV+LDVT  E++    QWV+ +VG++GLWGL+NNAGI    
Sbjct: 60  CLTEKGAQQLRSQTSDRLDTVILDVTKTESILAATQWVEERVGDRGLWGLVNNAGIFHPH 119

Query: 603 APTDWLTVEDYREPIEVNLFGLINVTLNMLPLVKKARGRVINVSSIGGRLAFXGGGYAPS 782
             ++WL +E Y +  +VNL GLI VTL+MLPL+++ARGR++NVSSI GRLAF GG Y  S
Sbjct: 120 CYSEWLKIEAYVDVFKVNLTGLIEVTLSMLPLLRRARGRIVNVSSILGRLAFFGGAYCSS 179

Query: 783 KYAVESFHDSLRRDMKAFGVHVACIEPGMVKTGLADQ*RRLKKTRHLGSSVSRIRHHMER 962
           KY VE+F D+LRR+++ FGV ++ +EPG  +TG+           H+   + R++   E 
Sbjct: 180 KYGVEAFSDTLRRELRHFGVKISIVEPGYFRTGMT----------HVAWCLERLKQAWEE 229

Query: 963 LP 968
           +P
Sbjct: 230 VP 231


>ref|XP_538240.2| PREDICTED: similar to orphan short-chain dehydrogenase / reductase
           [Canis familiaris]
          Length = 313

 Score =  231 bits (589), Expect = 9e-61
 Identities = 116/218 (53%), Positives = 152/218 (69%)
 Frame = +3

Query: 315 IADITDKYIFITGCDTGFGNLAARTFDKKGFHVIAACLTESGSTALKAETSERLHTVLLD 494
           + +++DKY+FITGCD+GFGNL AR    +G  V+AAC TE G+  L+ +TS RL T LLD
Sbjct: 20  VRNLSDKYVFITGCDSGFGNLLARQLVNRGMRVLAACFTEEGAQKLQRDTSYRLQTTLLD 79

Query: 495 VTDPENVKRTAQWVKNQVGEKGLWGLINNAGILGVLAPTDWLTVEDYREPIEVNLFGLIN 674
           VT  E+++   QWV++QVGE+GLW L+NNAGI     P +WLT ED+ + I VNL GLI 
Sbjct: 80  VTRTESIQAATQWVRDQVGEQGLWALVNNAGIGLPSGPNEWLTKEDFVKVINVNLVGLIE 139

Query: 675 VTLNMLPLVKKARGRVINVSSIGGRLAFXGGGYAPSKYAVESFHDSLRRDMKAFGVHVAC 854
           VTL+MLP+VKKARGRV+N+SS GGR+A  GGGY  SK+ VE+F DS+RR++  FGV V+ 
Sbjct: 140 VTLHMLPMVKKARGRVVNMSSSGGRVALIGGGYCVSKFGVEAFSDSIRRELHYFGVKVSI 199

Query: 855 IEPGMVKTGLADQ*RRLKKTRHLGSSVSRIRHHMERLP 968
           IEPG  +T +  +             VSR+R   ERLP
Sbjct: 200 IEPGNYRTSILGK----------EDMVSRMRKLWERLP 227


>ref|XP_538220.2| PREDICTED: similar to 11-cis retinol dehydrogenase (11-cis RDH)
           [Canis familiaris]
          Length = 339

 Score =  225 bits (573), Expect = 6e-59
 Identities = 108/219 (49%), Positives = 152/219 (69%)
 Frame = +3

Query: 222 PCHTQGKKMLFWLLALLILCGFLWNYKRQLKIADITDKYIFITGCDTGFGNLAARTFDKK 401
           P    G  M   LL  ++L   LW + R  +    +D ++FITGCD+GFG L A   D++
Sbjct: 14  PAGHSGSAMWLPLLLGVLLWAVLW-WLRDQQSLPASDAFVFITGCDSGFGRLLALRLDQR 72

Query: 402 GFHVIAACLTESGSTALKAETSERLHTVLLDVTDPENVKRTAQWVKNQVGEKGLWGLINN 581
           GF V+A+CLT +G+  L+   S RLHT LLDVT+P++V+R A+WV+  VGE GL+GL+NN
Sbjct: 73  GFRVLASCLTPAGAEDLQRVASSRLHTTLLDVTEPQSVQRAAKWVETHVGEAGLFGLVNN 132

Query: 582 AGILGVLAPTDWLTVEDYREPIEVNLFGLINVTLNMLPLVKKARGRVINVSSIGGRLAFX 761
           AG+ G++ PT WLT +D+   + VN  G I VTL +LPL++++RGRV+N+SS+ GRLA  
Sbjct: 133 AGVAGIIGPTPWLTQDDFHRVLNVNTLGPIRVTLALLPLLQQSRGRVVNISSVLGRLAAN 192

Query: 762 GGGYAPSKYAVESFHDSLRRDMKAFGVHVACIEPGMVKT 878
           GGGY  SK+ +E+F DSLRRD+  FGV V+ +EPG  +T
Sbjct: 193 GGGYCVSKFGLEAFSDSLRRDVAHFGVRVSIVEPGFFRT 231


>ref|XP_545160.2| PREDICTED: similar to 3-hydroxybutyrate dehydrogenase precursor
           [Canis familiaris]
          Length = 299

 Score =  139 bits (349), Expect = 6e-33
 Identities = 76/191 (39%), Positives = 115/191 (60%), Gaps = 7/191 (3%)
 Frame = +3

Query: 315 IADITDKYIFITGCDTGFGNLAARTFDKKGFHVIAACLTES----GSTALKAETSERLHT 482
           +  +  K + +TGCD+GFG   A+    KGF V A CL +     G   L    S+RL T
Sbjct: 6   LKQVGSKAVLVTGCDSGFGFSLAKHLHSKGFLVFAGCLMKDQGGDGVKELDGLKSDRLRT 65

Query: 483 VLLDVTDPENVKRTAQWVKNQVG--EKGLWGLINNAGILGVLAPTDWLTVEDYREPIEVN 656
           + L+V   E V+R  + V++ +   EKG+WGL+NNAGI       ++ ++E Y+E  EVN
Sbjct: 66  IQLNVCKGEEVERVVEVVRSSLEDPEKGMWGLVNNAGI-STFGEVEFTSMETYKEVAEVN 124

Query: 657 LFGLINVTLNMLPLVKKARGRVINVSSIGGRLAF-XGGGYAPSKYAVESFHDSLRRDMKA 833
           L+G + +T   LPL+++ARGR++N+SS+ GR+A      Y  +K+ VE+F D LR +M  
Sbjct: 125 LWGTVQMTKAFLPLIRRARGRIVNISSMLGRMANPARSPYCITKFGVEAFSDCLRYEMYP 184

Query: 834 FGVHVACIEPG 866
            GV V+ +EPG
Sbjct: 185 LGVKVSVVEPG 195


>ref|XP_546810.2| PREDICTED: similar to hydroxysteroid (17-beta) dehydrogenase 2
           [Canis familiaris]
          Length = 382

 Score =  134 bits (336), Expect = 2e-31
 Identities = 73/217 (33%), Positives = 125/217 (57%), Gaps = 4/217 (1%)
 Frame = +3

Query: 249 LFWLLALLIL-CGFLWNYKRQLKIADITDKYIFITGCDTGFGNLAARTFDKKGFHVIAAC 425
           L W L L  L C   + Y    ++  +  K + ITG D+GFG+  ++  D+ GF V    
Sbjct: 55  LSWGLILFFLSCVLTYTYLSGQELLPVDQKAVLITGGDSGFGHALSKYLDELGFTVFVGV 114

Query: 426 LTESGSTA--LKAETSERLHTVLLDVTDPENVKRTAQWVKNQVGEKGLWGLINNAGILGV 599
           L E GS A  L+   S+RL  + +D+TD + +K     V  ++ ++GLW ++NNAGI+ +
Sbjct: 115 LDEKGSGAEELRRTCSKRLSVLQMDITDQQQIKDAHSKVVEKLQDRGLWAVVNNAGIICL 174

Query: 600 LAPTDWLTVEDYREPIEVNLFGLINVTLNMLPLVKKARGRVINVSSIGGRLAFXG-GGYA 776
            A  + + + DY++ + VN FG + VT   LPL++K++GR++N+SS+   +       Y+
Sbjct: 175 PADGELIPMTDYKKCMAVNFFGAVEVTKAFLPLLRKSKGRLVNISSMAAGVPMEKLAAYS 234

Query: 777 PSKYAVESFHDSLRRDMKAFGVHVACIEPGMVKTGLA 887
            SK A+  F   +R+++  +GV V+ I+PG  +T +A
Sbjct: 235 SSKAALTMFSAVMRQELSKWGVKVSVIQPGGFRTNIA 271


>ref|XP_853935.1| PREDICTED: similar to Corticosteroid 11-beta-dehydrogenase, isozyme
           2 (11-DH2) (11-beta-hydroxysteroid dehydrogenase type 2)
           (11-beta-HSD2) (NAD-dependent 11-beta-hydroxysteroid
           dehydrogenase) [Canis familiaris]
          Length = 323

 Score =  117 bits (293), Expect = 2e-26
 Identities = 65/178 (36%), Positives = 99/178 (55%), Gaps = 3/178 (1%)
 Frame = +3

Query: 354 CDTGFGNLAARTFDKKGFHVIAACLTESGSTAL--KAETSERLHTVLLDVTDPENVKRTA 527
           CD+GFG   A+  D  GF V+A  L   G  AL  +A  S RL  + +D+T P ++ R  
Sbjct: 8   CDSGFGKETAKKLDAMGFTVLATVLELDGPGALELRACCSPRLRLLQMDLTKPADISRAL 67

Query: 528 QWVKNQVGEKGLWGLINNAGILGVLAPTDWLTVEDYREPIEVNLFGLINVTLNMLPLVKK 707
           ++ K      GLWGL+NNAG   V+A  +   V  +R  +EVN FG + +T  +LPL+++
Sbjct: 68  EFTKAHTSSTGLWGLVNNAGHNDVVADVELSPVATFRSCMEVNFFGALELTKGLLPLLRR 127

Query: 708 ARGRVINVSSIGGRLAFXG-GGYAPSKYAVESFHDSLRRDMKAFGVHVACIEPGMVKT 878
           +RGR++ V S  G + +     Y  SK A+    D+   ++  +GV V+ I+PG  KT
Sbjct: 128 SRGRIVTVGSPAGDMPYPCLAAYGTSKAAMALLMDTFSCELLPWGVKVSVIQPGCFKT 185


  Database: RefSeqCP
    Posted date:  Aug 1, 2006  9:25 PM
  Number of letters in database: 19,266,565
  Number of sequences in database:  33,732
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 42,139,544
Number of Sequences: 33732
Number of extensions: 1036190
Number of successful extensions: 2764
Number of sequences better than 1.0e-05: 10
Number of HSP's better than  0.0 without gapping: 2579
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2733
length of database: 19,266,565
effective HSP length: 104
effective length of database: 15,758,437
effective search space used: 3782024880
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)