Search to RefSeqHP
BLASTX 2.2.10 [Oct-19-2004]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20060611S-029724
(1203 letters)
Database: RefSeqHP
39,411 sequences; 17,774,539 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_949974.1| PREDICTED: similar to HLA class II histocompati... 211 4e-66
Alignment gi|XP_949973.1| PREDICTED: similar to HLA class II histocompati... 211 4e-66
Alignment gi|XP_949971.1| PREDICTED: similar to HLA class II histocompati... 211 4e-66
Alignment gi|XP_945969.1| PREDICTED: similar to HLA class II histocompati... 211 4e-66
Alignment gi|NP_002113.2| major histocompatibility complex, class II, DQ ... 202 2e-63
Alignment gi|NP_064440.1| major histocompatibility complex, class II, DQ ... 200 1e-62
Alignment gi|XP_949969.1| PREDICTED: similar to HLA class II histocompati... 211 3e-61
Alignment gi|XP_941306.1| PREDICTED: similar to HLA class II histocompati... 194 6e-61
Alignment gi|XP_941305.1| PREDICTED: similar to HLA class II histocompati... 194 6e-61
Alignment gi|XP_941304.1| PREDICTED: similar to HLA class II histocompati... 194 6e-61
>ref|XP_949974.1| PREDICTED: similar to HLA class II histocompatibility antigen,
DQ(1) alpha chain precursor (DC-4 alpha chain) isoform
10 [Homo sapiens]
Length = 255
Score = 211 bits (538), Expect(3) = 4e-66
Identities = 111/181 (61%), Positives = 126/181 (69%), Gaps = 1/181 (0%)
Frame = +2
Query: 53 MVPGRVLMWGALALSTVMSA*GGEDIAADHVASYGLYVYQPYRPSGYFTHEFDGDEEFYG 232
M+ + LM GALAL+TVMS GGEDI ADHVASYG+ +YQ Y PSG ++HEFDGDEEFY
Sbjct: 1 MILNKALMLGALALTTVMSPCGGEDIVADHVASYGVNLYQSYGPSGQYSHEFDGDEEFYV 60
Query: 233 DLEKIETVWRVPLFTEFTSFDPQGALRNIATLKHNLTIVTNRSNDTAAVYQXXXXXXXXX 412
DLE+ ETVW++PLF F FDPQ AL NIA LKHNL IV RSN TAA +
Sbjct: 61 DLERKETVWQLPLFRRFRRFDPQFALTNIAVLKHNLNIVIKRSNSTAATNEVPEVTVFSK 120
Query: 413 XXXILGHPLPLICPVDSIFPPVINIAWFEIGLSV-EGFSDTIFLSYNDLSFLNISYLTFL 589
LG P LIC VD+IFPPV+NI W G SV EG S+T FLS +D SF ISYLTFL
Sbjct: 121 SPVTLGQPNTLICLVDNIFPPVVNITWLSNGHSVTEGVSETSFLSKSDHSFFKISYLTFL 180
Query: 590 P 592
P
Sbjct: 181 P 181
Score = 47.8 bits (112), Expect(3) = 4e-66
Identities = 17/20 (85%), Positives = 18/20 (90%)
Frame = +3
Query: 609 YDCQVEHWGLDNPLLTHWEP 668
YDC+VEHWGLD PLL HWEP
Sbjct: 187 YDCKVEHWGLDEPLLKHWEP 206
Score = 32.7 bits (73), Expect(3) = 4e-66
Identities = 15/19 (78%), Positives = 15/19 (78%)
Frame = +1
Query: 667 PEIPAPMS*LTETAVCPPG 723
PEIPAPMS LTET VC G
Sbjct: 206 PEIPAPMSELTETVVCALG 224
>ref|XP_949973.1| PREDICTED: similar to HLA class II histocompatibility antigen,
DQ(1) alpha chain precursor (DC-4 alpha chain) isoform 9
[Homo sapiens]
Length = 255
Score = 211 bits (538), Expect(3) = 4e-66
Identities = 111/181 (61%), Positives = 126/181 (69%), Gaps = 1/181 (0%)
Frame = +2
Query: 53 MVPGRVLMWGALALSTVMSA*GGEDIAADHVASYGLYVYQPYRPSGYFTHEFDGDEEFYG 232
M+ + LM GALAL+TVMS GGEDI ADHVASYG+ +YQ Y PSG ++HEFDGDEEFY
Sbjct: 1 MILNKALMLGALALTTVMSPCGGEDIVADHVASYGVNLYQSYGPSGQYSHEFDGDEEFYV 60
Query: 233 DLEKIETVWRVPLFTEFTSFDPQGALRNIATLKHNLTIVTNRSNDTAAVYQXXXXXXXXX 412
DLE+ ETVW++PLF F FDPQ AL NIA LKHNL IV RSN TAA +
Sbjct: 61 DLERKETVWQLPLFRRFRRFDPQFALTNIAVLKHNLNIVIKRSNSTAATNEVPEVTVFSK 120
Query: 413 XXXILGHPLPLICPVDSIFPPVINIAWFEIGLSV-EGFSDTIFLSYNDLSFLNISYLTFL 589
LG P LIC VD+IFPPV+NI W G SV EG S+T FLS +D SF ISYLTFL
Sbjct: 121 SPVTLGQPNTLICLVDNIFPPVVNITWLSNGHSVTEGVSETSFLSKSDHSFFKISYLTFL 180
Query: 590 P 592
P
Sbjct: 181 P 181
Score = 47.8 bits (112), Expect(3) = 4e-66
Identities = 17/20 (85%), Positives = 18/20 (90%)
Frame = +3
Query: 609 YDCQVEHWGLDNPLLTHWEP 668
YDC+VEHWGLD PLL HWEP
Sbjct: 187 YDCKVEHWGLDEPLLKHWEP 206
Score = 32.7 bits (73), Expect(3) = 4e-66
Identities = 15/19 (78%), Positives = 15/19 (78%)
Frame = +1
Query: 667 PEIPAPMS*LTETAVCPPG 723
PEIPAPMS LTET VC G
Sbjct: 206 PEIPAPMSELTETVVCALG 224
>ref|XP_949971.1| PREDICTED: similar to HLA class II histocompatibility antigen,
DQ(1) alpha chain precursor (DC-4 alpha chain) isoform 8
[Homo sapiens]
Length = 255
Score = 211 bits (538), Expect(3) = 4e-66
Identities = 111/181 (61%), Positives = 126/181 (69%), Gaps = 1/181 (0%)
Frame = +2
Query: 53 MVPGRVLMWGALALSTVMSA*GGEDIAADHVASYGLYVYQPYRPSGYFTHEFDGDEEFYG 232
M+ + LM GALAL+TVMS GGEDI ADHVASYG+ +YQ Y PSG ++HEFDGDEEFY
Sbjct: 1 MILNKALMLGALALTTVMSPCGGEDIVADHVASYGVNLYQSYGPSGQYSHEFDGDEEFYV 60
Query: 233 DLEKIETVWRVPLFTEFTSFDPQGALRNIATLKHNLTIVTNRSNDTAAVYQXXXXXXXXX 412
DLE+ ETVW++PLF F FDPQ AL NIA LKHNL IV RSN TAA +
Sbjct: 61 DLERKETVWQLPLFRRFRRFDPQFALTNIAVLKHNLNIVIKRSNSTAATNEVPEVTVFSK 120
Query: 413 XXXILGHPLPLICPVDSIFPPVINIAWFEIGLSV-EGFSDTIFLSYNDLSFLNISYLTFL 589
LG P LIC VD+IFPPV+NI W G SV EG S+T FLS +D SF ISYLTFL
Sbjct: 121 SPVTLGQPNTLICLVDNIFPPVVNITWLSNGHSVTEGVSETSFLSKSDHSFFKISYLTFL 180
Query: 590 P 592
P
Sbjct: 181 P 181
Score = 47.8 bits (112), Expect(3) = 4e-66
Identities = 17/20 (85%), Positives = 18/20 (90%)
Frame = +3
Query: 609 YDCQVEHWGLDNPLLTHWEP 668
YDC+VEHWGLD PLL HWEP
Sbjct: 187 YDCKVEHWGLDEPLLKHWEP 206
Score = 32.7 bits (73), Expect(3) = 4e-66
Identities = 15/19 (78%), Positives = 15/19 (78%)
Frame = +1
Query: 667 PEIPAPMS*LTETAVCPPG 723
PEIPAPMS LTET VC G
Sbjct: 206 PEIPAPMSELTETVVCALG 224
>ref|XP_945969.1| PREDICTED: similar to HLA class II histocompatibility antigen,
DQ(1) alpha chain precursor (DC-4 alpha chain) isoform 1
[Homo sapiens]
Length = 255
Score = 211 bits (538), Expect(3) = 4e-66
Identities = 111/181 (61%), Positives = 126/181 (69%), Gaps = 1/181 (0%)
Frame = +2
Query: 53 MVPGRVLMWGALALSTVMSA*GGEDIAADHVASYGLYVYQPYRPSGYFTHEFDGDEEFYG 232
M+ + LM GALAL+TVMS GGEDI ADHVASYG+ +YQ Y PSG ++HEFDGDEEFY
Sbjct: 1 MILNKALMLGALALTTVMSPCGGEDIVADHVASYGVNLYQSYGPSGQYSHEFDGDEEFYV 60
Query: 233 DLEKIETVWRVPLFTEFTSFDPQGALRNIATLKHNLTIVTNRSNDTAAVYQXXXXXXXXX 412
DLE+ ETVW++PLF F FDPQ AL NIA LKHNL IV RSN TAA +
Sbjct: 61 DLERKETVWQLPLFRRFRRFDPQFALTNIAVLKHNLNIVIKRSNSTAATNEVPEVTVFSK 120
Query: 413 XXXILGHPLPLICPVDSIFPPVINIAWFEIGLSV-EGFSDTIFLSYNDLSFLNISYLTFL 589
LG P LIC VD+IFPPV+NI W G SV EG S+T FLS +D SF ISYLTFL
Sbjct: 121 SPVTLGQPNTLICLVDNIFPPVVNITWLSNGHSVTEGVSETSFLSKSDHSFFKISYLTFL 180
Query: 590 P 592
P
Sbjct: 181 P 181
Score = 47.8 bits (112), Expect(3) = 4e-66
Identities = 17/20 (85%), Positives = 18/20 (90%)
Frame = +3
Query: 609 YDCQVEHWGLDNPLLTHWEP 668
YDC+VEHWGLD PLL HWEP
Sbjct: 187 YDCKVEHWGLDEPLLKHWEP 206
Score = 32.7 bits (73), Expect(3) = 4e-66
Identities = 15/19 (78%), Positives = 15/19 (78%)
Frame = +1
Query: 667 PEIPAPMS*LTETAVCPPG 723
PEIPAPMS LTET VC G
Sbjct: 206 PEIPAPMSELTETVVCALG 224
>ref|NP_002113.2| major histocompatibility complex, class II, DQ alpha 1 precursor
[Homo sapiens]
Length = 255
Score = 202 bits (515), Expect(3) = 2e-63
Identities = 106/181 (58%), Positives = 124/181 (68%), Gaps = 1/181 (0%)
Frame = +2
Query: 53 MVPGRVLMWGALALSTVMSA*GGEDIAADHVASYGLYVYQPYRPSGYFTHEFDGDEEFYG 232
M+ + L+ GALAL+TVMS GGEDI ADHVAS G+ +YQ Y PSG +THEFDGDE+FY
Sbjct: 1 MILNKALLLGALALTTVMSPCGGEDIVADHVASCGVNLYQFYGPSGQYTHEFDGDEQFYV 60
Query: 233 DLEKIETVWRVPLFTEFTSFDPQGALRNIATLKHNLTIVTNRSNDTAAVYQXXXXXXXXX 412
DLE+ ET WR P F++F FDPQGALRN+A KHNL I+ R N TAA +
Sbjct: 61 DLERKETAWRWPEFSKFGGFDPQGALRNMAVAKHNLNIMIKRYNSTAATNEVPEVTVFSK 120
Query: 413 XXXILGHPLPLICPVDSIFPPVINIAWFEIGLSV-EGFSDTIFLSYNDLSFLNISYLTFL 589
LG P LIC VD+IFPPV+NI W G SV EG S+T FLS +D SF ISYLTFL
Sbjct: 121 SPVTLGQPNTLICLVDNIFPPVVNITWLSNGQSVTEGVSETSFLSKSDHSFFKISYLTFL 180
Query: 590 P 592
P
Sbjct: 181 P 181
Score = 47.8 bits (112), Expect(3) = 2e-63
Identities = 17/20 (85%), Positives = 18/20 (90%)
Frame = +3
Query: 609 YDCQVEHWGLDNPLLTHWEP 668
YDC+VEHWGLD PLL HWEP
Sbjct: 187 YDCKVEHWGLDQPLLKHWEP 206
Score = 32.7 bits (73), Expect(3) = 2e-63
Identities = 15/19 (78%), Positives = 15/19 (78%)
Frame = +1
Query: 667 PEIPAPMS*LTETAVCPPG 723
PEIPAPMS LTET VC G
Sbjct: 206 PEIPAPMSELTETVVCALG 224
>ref|NP_064440.1| major histocompatibility complex, class II, DQ alpha 2 [Homo
sapiens]
Length = 255
Score = 200 bits (509), Expect(3) = 1e-62
Identities = 104/181 (57%), Positives = 124/181 (68%), Gaps = 1/181 (0%)
Frame = +2
Query: 53 MVPGRVLMWGALALSTVMSA*GGEDIAADHVASYGLYVYQPYRPSGYFTHEFDGDEEFYG 232
M+ + L+ GALAL+ VMS GGEDI ADHVASYG+ YQ + PSG +THEFDGDEEFY
Sbjct: 1 MILNKALLLGALALTAVMSPCGGEDIVADHVASYGVNFYQSHGPSGQYTHEFDGDEEFYV 60
Query: 233 DLEKIETVWRVPLFTEFTSFDPQGALRNIATLKHNLTIVTNRSNDTAAVYQXXXXXXXXX 412
DLE ETVW++P+F++F SFDPQ ALRN+A KH L + +SN TAA +
Sbjct: 61 DLETKETVWQLPMFSKFISFDPQSALRNMAVGKHTLEFMMRQSNSTAATNEVPEVTVFSK 120
Query: 413 XXXILGHPLPLICPVDSIFPPVINIAWFEIGLSV-EGFSDTIFLSYNDLSFLNISYLTFL 589
LG P LIC VD+IFPPV+NI W G SV EG S+T FLS +D SF ISYLTFL
Sbjct: 121 FPVTLGQPNTLICLVDNIFPPVVNITWLSNGHSVTEGVSETSFLSKSDHSFFKISYLTFL 180
Query: 590 P 592
P
Sbjct: 181 P 181
Score = 47.8 bits (112), Expect(3) = 1e-62
Identities = 17/20 (85%), Positives = 18/20 (90%)
Frame = +3
Query: 609 YDCQVEHWGLDNPLLTHWEP 668
YDC+VEHWGLD PLL HWEP
Sbjct: 187 YDCKVEHWGLDEPLLKHWEP 206
Score = 32.3 bits (72), Expect(3) = 1e-62
Identities = 15/19 (78%), Positives = 15/19 (78%)
Frame = +1
Query: 667 PEIPAPMS*LTETAVCPPG 723
PEIPAPMS LTET VC G
Sbjct: 206 PEIPAPMSELTETLVCALG 224
>ref|XP_949969.1| PREDICTED: similar to HLA class II histocompatibility antigen,
DQ(1) alpha chain precursor (DC-4 alpha chain) isoform 7
[Homo sapiens]
Length = 208
Score = 211 bits (538), Expect(2) = 3e-61
Identities = 111/181 (61%), Positives = 126/181 (69%), Gaps = 1/181 (0%)
Frame = +2
Query: 53 MVPGRVLMWGALALSTVMSA*GGEDIAADHVASYGLYVYQPYRPSGYFTHEFDGDEEFYG 232
M+ + LM GALAL+TVMS GGEDI ADHVASYG+ +YQ Y PSG ++HEFDGDEEFY
Sbjct: 1 MILNKALMLGALALTTVMSPCGGEDIVADHVASYGVNLYQSYGPSGQYSHEFDGDEEFYV 60
Query: 233 DLEKIETVWRVPLFTEFTSFDPQGALRNIATLKHNLTIVTNRSNDTAAVYQXXXXXXXXX 412
DLE+ ETVW++PLF F FDPQ AL NIA LKHNL IV RSN TAA +
Sbjct: 61 DLERKETVWQLPLFRRFRRFDPQFALTNIAVLKHNLNIVIKRSNSTAATNEVPEVTVFSK 120
Query: 413 XXXILGHPLPLICPVDSIFPPVINIAWFEIGLSV-EGFSDTIFLSYNDLSFLNISYLTFL 589
LG P LIC VD+IFPPV+NI W G SV EG S+T FLS +D SF ISYLTFL
Sbjct: 121 SPVTLGQPNTLICLVDNIFPPVVNITWLSNGHSVTEGVSETSFLSKSDHSFFKISYLTFL 180
Query: 590 P 592
P
Sbjct: 181 P 181
Score = 43.1 bits (100), Expect(2) = 3e-61
Identities = 15/18 (83%), Positives = 16/18 (88%)
Frame = +3
Query: 609 YDCQVEHWGLDNPLLTHW 662
YDC+VEHWGLD PLL HW
Sbjct: 187 YDCKVEHWGLDEPLLKHW 204
>ref|XP_941306.1| PREDICTED: similar to HLA class II histocompatibility antigen,
DQ(3) alpha chain precursor (DC-alpha) (HLA-DCA)
(HLA-DQA1*05011) (HLA-DQA1*0502) isoform 10 [Homo
sapiens]
Length = 254
Score = 194 bits (493), Expect(3) = 6e-61
Identities = 105/181 (58%), Positives = 122/181 (67%), Gaps = 1/181 (0%)
Frame = +2
Query: 53 MVPGRVLMWGALALSTVMSA*GGEDIAADHVASYGLYVYQPYRPSGYFTHEFDGDEEFYG 232
M+ + LM GALAL+TVMS GGEDI ADHVASYG+ +YQ Y PSG +THEFDGDE+FY
Sbjct: 1 MILNKALMLGALALTTVMSPCGGEDIVADHVASYGVNLYQSYGPSGQYTHEFDGDEQFYV 60
Query: 233 DLEKIETVWRVPLFTEFTSFDPQGALRNIATLKHNLTIVTNRSNDTAAVYQXXXXXXXXX 412
DL + ETVW +P+ +F FDPQ AL NIA LKHNL + RSN TAA +
Sbjct: 61 DLGRKETVWCLPVLRQF-RFDPQFALTNIAVLKHNLNSLIKRSNSTAATNEVPEVTVFSK 119
Query: 413 XXXILGHPLPLICPVDSIFPPVINIAWFEIGLSV-EGFSDTIFLSYNDLSFLNISYLTFL 589
LG P LIC VD+IFPPV+NI W G SV EG S+T FLS +D SF ISYLT L
Sbjct: 120 SPVTLGQPNILICLVDNIFPPVVNITWLSNGHSVTEGVSETSFLSKSDHSFFKISYLTLL 179
Query: 590 P 592
P
Sbjct: 180 P 180
Score = 47.8 bits (112), Expect(3) = 6e-61
Identities = 17/20 (85%), Positives = 18/20 (90%)
Frame = +3
Query: 609 YDCQVEHWGLDNPLLTHWEP 668
YDC+VEHWGLD PLL HWEP
Sbjct: 186 YDCKVEHWGLDKPLLKHWEP 205
Score = 32.7 bits (73), Expect(3) = 6e-61
Identities = 15/19 (78%), Positives = 15/19 (78%)
Frame = +1
Query: 667 PEIPAPMS*LTETAVCPPG 723
PEIPAPMS LTET VC G
Sbjct: 205 PEIPAPMSELTETVVCALG 223
>ref|XP_941305.1| PREDICTED: similar to HLA class II histocompatibility antigen,
DQ(3) alpha chain precursor (DC-alpha) (HLA-DCA)
(HLA-DQA1*05011) (HLA-DQA1*0502) isoform 9 [Homo
sapiens]
Length = 254
Score = 194 bits (493), Expect(3) = 6e-61
Identities = 105/181 (58%), Positives = 122/181 (67%), Gaps = 1/181 (0%)
Frame = +2
Query: 53 MVPGRVLMWGALALSTVMSA*GGEDIAADHVASYGLYVYQPYRPSGYFTHEFDGDEEFYG 232
M+ + LM GALAL+TVMS GGEDI ADHVASYG+ +YQ Y PSG +THEFDGDE+FY
Sbjct: 1 MILNKALMLGALALTTVMSPCGGEDIVADHVASYGVNLYQSYGPSGQYTHEFDGDEQFYV 60
Query: 233 DLEKIETVWRVPLFTEFTSFDPQGALRNIATLKHNLTIVTNRSNDTAAVYQXXXXXXXXX 412
DL + ETVW +P+ +F FDPQ AL NIA LKHNL + RSN TAA +
Sbjct: 61 DLGRKETVWCLPVLRQF-RFDPQFALTNIAVLKHNLNSLIKRSNSTAATNEVPEVTVFSK 119
Query: 413 XXXILGHPLPLICPVDSIFPPVINIAWFEIGLSV-EGFSDTIFLSYNDLSFLNISYLTFL 589
LG P LIC VD+IFPPV+NI W G SV EG S+T FLS +D SF ISYLT L
Sbjct: 120 SPVTLGQPNILICLVDNIFPPVVNITWLSNGHSVTEGVSETSFLSKSDHSFFKISYLTLL 179
Query: 590 P 592
P
Sbjct: 180 P 180
Score = 47.8 bits (112), Expect(3) = 6e-61
Identities = 17/20 (85%), Positives = 18/20 (90%)
Frame = +3
Query: 609 YDCQVEHWGLDNPLLTHWEP 668
YDC+VEHWGLD PLL HWEP
Sbjct: 186 YDCKVEHWGLDKPLLKHWEP 205
Score = 32.7 bits (73), Expect(3) = 6e-61
Identities = 15/19 (78%), Positives = 15/19 (78%)
Frame = +1
Query: 667 PEIPAPMS*LTETAVCPPG 723
PEIPAPMS LTET VC G
Sbjct: 205 PEIPAPMSELTETVVCALG 223
>ref|XP_941304.1| PREDICTED: similar to HLA class II histocompatibility antigen,
DQ(3) alpha chain precursor (DC-alpha) (HLA-DCA)
(HLA-DQA1*05011) (HLA-DQA1*0502) isoform 8 [Homo
sapiens]
Length = 254
Score = 194 bits (493), Expect(3) = 6e-61
Identities = 105/181 (58%), Positives = 122/181 (67%), Gaps = 1/181 (0%)
Frame = +2
Query: 53 MVPGRVLMWGALALSTVMSA*GGEDIAADHVASYGLYVYQPYRPSGYFTHEFDGDEEFYG 232
M+ + LM GALAL+TVMS GGEDI ADHVASYG+ +YQ Y PSG +THEFDGDE+FY
Sbjct: 1 MILNKALMLGALALTTVMSPCGGEDIVADHVASYGVNLYQSYGPSGQYTHEFDGDEQFYV 60
Query: 233 DLEKIETVWRVPLFTEFTSFDPQGALRNIATLKHNLTIVTNRSNDTAAVYQXXXXXXXXX 412
DL + ETVW +P+ +F FDPQ AL NIA LKHNL + RSN TAA +
Sbjct: 61 DLGRKETVWCLPVLRQF-RFDPQFALTNIAVLKHNLNSLIKRSNSTAATNEVPEVTVFSK 119
Query: 413 XXXILGHPLPLICPVDSIFPPVINIAWFEIGLSV-EGFSDTIFLSYNDLSFLNISYLTFL 589
LG P LIC VD+IFPPV+NI W G SV EG S+T FLS +D SF ISYLT L
Sbjct: 120 SPVTLGQPNILICLVDNIFPPVVNITWLSNGHSVTEGVSETSFLSKSDHSFFKISYLTLL 179
Query: 590 P 592
P
Sbjct: 180 P 180
Score = 47.8 bits (112), Expect(3) = 6e-61
Identities = 17/20 (85%), Positives = 18/20 (90%)
Frame = +3
Query: 609 YDCQVEHWGLDNPLLTHWEP 668
YDC+VEHWGLD PLL HWEP
Sbjct: 186 YDCKVEHWGLDKPLLKHWEP 205
Score = 32.7 bits (73), Expect(3) = 6e-61
Identities = 15/19 (78%), Positives = 15/19 (78%)
Frame = +1
Query: 667 PEIPAPMS*LTETAVCPPG 723
PEIPAPMS LTET VC G
Sbjct: 205 PEIPAPMSELTETVVCALG 223
Database: RefSeqHP
Posted date: Aug 2, 2006 12:57 AM
Number of letters in database: 17,774,539
Number of sequences in database: 39,411
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 36,579,175
Number of Sequences: 39411
Number of extensions: 984329
Number of successful extensions: 5181
Number of sequences better than 1.0e-05: 10
Number of HSP's better than 0.0 without gapping: 3627
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4990
length of database: 17,774,539
effective HSP length: 104
effective length of database: 13,675,795
effective search space used: 4048035320
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
Search to RefSeqMP
BLASTX 2.2.10 [Oct-19-2004]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20060611S-029724
(1203 letters)
Database: RefSeqMP
45,328 sequences; 21,768,885 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_034508.2| histocompatibility 2, class II antigen A, alpha... 171 3e-53
Alignment gi|NP_032232.1| histocompatibility 2, O region alpha locus [Mus... 122 8e-36
Alignment gi|NP_034511.2| histocompatibility 2, class II antigen E alpha ... 116 2e-32
>ref|NP_034508.2| histocompatibility 2, class II antigen A, alpha [Mus musculus]
Length = 256
Score = 171 bits (434), Expect(3) = 3e-53
Identities = 93/182 (51%), Positives = 114/182 (62%), Gaps = 2/182 (1%)
Frame = +2
Query: 53 MVPGRVLMWGALALSTVMSA*GGED-IAADHVASYGLYVYQPYRPSGYFTHEFDGDEEFY 229
M R L+ G LAL+T++S GGED I ADHV +YG+ VYQ G +T EFDGDE FY
Sbjct: 1 MPRSRALILGVLALTTMLSLCGGEDDIEADHVGTYGISVYQSPGDIGQYTFEFDGDELFY 60
Query: 230 GDLEKIETVWRVPLFTEFTSFDPQGALRNIATLKHNLTIVTNRSNDTAAVYQXXXXXXXX 409
DL+K ETVW +P F + SFDPQG L+NIA +KHNL ++T RSN T A +
Sbjct: 61 VDLDKKETVWMLPEFGQLASFDPQGGLQNIAVVKHNLGVLTKRSNSTPATNEAPQATVFP 120
Query: 410 XXXXILGHPLPLICPVDSIFPPVINIAWFEIGLSV-EGFSDTIFLSYNDLSFLNISYLTF 586
+LG P LIC VD+IFPPVINI W SV +G +T F D SF +SYLTF
Sbjct: 121 KSPVLLGQPNTLICFVDNIFPPVINITWLRNSKSVADGVYETSFFVNRDYSFHKLSYLTF 180
Query: 587 LP 592
+P
Sbjct: 181 IP 182
Score = 45.1 bits (105), Expect(3) = 3e-53
Identities = 15/20 (75%), Positives = 18/20 (90%)
Frame = +3
Query: 609 YDCQVEHWGLDNPLLTHWEP 668
YDC+VEHWGL+ P+L HWEP
Sbjct: 188 YDCKVEHWGLEEPVLKHWEP 207
Score = 32.7 bits (73), Expect(3) = 3e-53
Identities = 15/19 (78%), Positives = 15/19 (78%)
Frame = +1
Query: 667 PEIPAPMS*LTETAVCPPG 723
PEIPAPMS LTET VC G
Sbjct: 207 PEIPAPMSELTETVVCALG 225
>ref|NP_032232.1| histocompatibility 2, O region alpha locus [Mus musculus]
Length = 250
Score = 122 bits (306), Expect(2) = 8e-36
Identities = 71/170 (41%), Positives = 91/170 (53%), Gaps = 1/170 (0%)
Frame = +2
Query: 86 LALSTVMSA*GGEDIAADHVASYGLYVYQPYRPSGYFTHEFDGDEEFYGDLEKIETVWRV 265
L + + +S G I ADH+ SYG YQ Y SG FTHEFDG++ F DL+ E VWR+
Sbjct: 12 LTVMSFLSPRGVRAIKADHMGSYGPAFYQSYDASGQFTHEFDGEQIFSVDLKNEEVVWRL 71
Query: 266 PLFTEFTSFDPQGALRNIATLKHNLTIVTNRSNDTAAVYQXXXXXXXXXXXXILGHPLPL 445
P F +F D Q L +I+ +K +L I+ RSN T AV LG P L
Sbjct: 72 PEFGDFAHSDFQSGLMSISMIKAHLDILVERSNRTRAVSVPPRVTVLPKTRVELGKPNVL 131
Query: 446 ICPVDSIFPPVINIAWFEIGLSV-EGFSDTIFLSYNDLSFLNISYLTFLP 592
IC VD IFPPVIN+ W + +G + T F S + F YLTF+P
Sbjct: 132 ICIVDDIFPPVINVTWLRNSQPITKGVAQTSFYSQPNHRFRKFHYLTFVP 181
Score = 47.8 bits (112), Expect(2) = 8e-36
Identities = 17/20 (85%), Positives = 18/20 (90%)
Frame = +3
Query: 609 YDCQVEHWGLDNPLLTHWEP 668
YDC+VEHWGLD PLL HWEP
Sbjct: 187 YDCKVEHWGLDTPLLQHWEP 206
>ref|NP_034511.2| histocompatibility 2, class II antigen E alpha [Mus musculus]
Length = 255
Score = 116 bits (290), Expect(2) = 2e-32
Identities = 62/136 (45%), Positives = 78/136 (57%), Gaps = 1/136 (0%)
Frame = +2
Query: 188 GYFTHEFDGDEEFYGDLEKIETVWRVPLFTEFTSFDPQGALRNIATLKHNLTIVTNRSND 367
G F +FDGDE F+ D+EK ET+WR+ F +F SF+ QGAL NIA K NL ++ RSN+
Sbjct: 45 GEFMFDFDGDEIFHVDIEKSETIWRLEEFAKFASFEAQGALANIAVDKANLDVMKERSNN 104
Query: 368 TAAVYQXXXXXXXXXXXXILGHPLPLICPVDSIFPPVINIAWFEIGLSV-EGFSDTIFLS 544
T LG P LIC +D PPV+N+ WF G V EG S+T+FL
Sbjct: 105 TPDANVAPEVTVLSRSPVNLGEPNILICFIDKFSPPVVNVTWFRNGRPVTEGVSETVFLP 164
Query: 545 YNDLSFLNISYLTFLP 592
+D F YLTFLP
Sbjct: 165 RDDHLFRKFHYLTFLP 180
Score = 42.7 bits (99), Expect(2) = 2e-32
Identities = 14/20 (70%), Positives = 17/20 (85%)
Frame = +3
Query: 606 FYDCQVEHWGLDNPLLTHWE 665
FYDC+V+HWGL+ PL HWE
Sbjct: 185 FYDCEVDHWGLEEPLRKHWE 204
Database: RefSeqMP
Posted date: Aug 2, 2006 12:58 AM
Number of letters in database: 21,768,885
Number of sequences in database: 45,328
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 42,706,509
Number of Sequences: 45328
Number of extensions: 1085293
Number of successful extensions: 4925
Number of sequences better than 1.0e-05: 3
Number of HSP's better than 0.0 without gapping: 3900
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4822
length of database: 21,768,885
effective HSP length: 106
effective length of database: 16,964,117
effective search space used: 4987450398
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
Search to RefSeqCP
BLASTX 2.2.10 [Oct-19-2004]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20060611S-029724
(1203 letters)
Database: RefSeqCP
33,732 sequences; 19,266,565 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001011726.1| MHC class II DLA DQalpha chain [Canis famili... 206 8e-64
Alignment gi|XP_850803.1| PREDICTED: similar to HLA class II histocompati... 116 8e-34
Alignment gi|NP_001011723.1| MHC class II DR alpha chain [Canis familiaris] 109 3e-31
Alignment gi|XP_532104.2| PREDICTED: similar to HLA class II histocompati... 85 2e-16
>ref|NP_001011726.1| MHC class II DLA DQalpha chain [Canis familiaris]
Length = 255
Score = 206 bits (524), Expect(3) = 8e-64
Identities = 106/181 (58%), Positives = 127/181 (70%), Gaps = 1/181 (0%)
Frame = +2
Query: 53 MVPGRVLMWGALALSTVMSA*GGEDIAADHVASYGLYVYQPYRPSGYFTHEFDGDEEFYG 232
M+ RVL+ G L L+ +MS GGE+I ADHVA+YG+ VYQ Y PSG +THEFDGDEEFY
Sbjct: 1 MILNRVLILGTLILTIMMSPSGGEEIVADHVANYGINVYQSYGPSGQYTHEFDGDEEFYV 60
Query: 233 DLEKIETVWRVPLFTEFTSFDPQGALRNIATLKHNLTIVTNRSNDTAAVYQXXXXXXXXX 412
DLEK ETVWR+P+F+ F SFDPQGALRN+A +K NL I+T RSN TAA +
Sbjct: 61 DLEKKETVWRLPVFSTFRSFDPQGALRNLAIIKQNLNIMTKRSNQTAATNEVPEVTVFSK 120
Query: 413 XXXILGHPLPLICPVDSIFPPVINIAWFEIGLSV-EGFSDTIFLSYNDLSFLNISYLTFL 589
+LG P LIC VD+IFPPVIN+ W + SV EG S+T F + D SF ISYLTFL
Sbjct: 121 SPVMLGQPNTLICLVDNIFPPVINVTWLKNRHSVTEGVSETSFFAKGDHSFSKISYLTFL 180
Query: 590 P 592
P
Sbjct: 181 P 181
Score = 47.8 bits (112), Expect(3) = 8e-64
Identities = 17/20 (85%), Positives = 18/20 (90%)
Frame = +3
Query: 609 YDCQVEHWGLDNPLLTHWEP 668
YDC+VEHWGLD PLL HWEP
Sbjct: 187 YDCKVEHWGLDEPLLKHWEP 206
Score = 30.8 bits (68), Expect(3) = 8e-64
Identities = 13/19 (68%), Positives = 14/19 (73%)
Frame = +1
Query: 667 PEIPAPMS*LTETAVCPPG 723
PE+P PMS LTET VC G
Sbjct: 206 PEVPTPMSELTETVVCALG 224
>ref|XP_850803.1| PREDICTED: similar to HLA class II histocompatibility antigen, DO
alpha chain precursor (MHC class II antigen DOA) (MHC DZ
alpha) (MHC DN-alpha) isoform 11 [Canis familiaris]
Length = 227
Score = 116 bits (291), Expect(3) = 8e-34
Identities = 66/158 (41%), Positives = 84/158 (53%), Gaps = 8/158 (5%)
Frame = +2
Query: 143 VASYGLYVYQPYRPSGYFTHEFDGDEEFYGDLEKIETVWRVPLFTEFTSFDPQGALRNIA 322
+ SYG YQ Y SG F HEFDG++ F +L+K + VWR+P F FDPQ L +IA
Sbjct: 1 MGSYGPAFYQSYGSSGQFAHEFDGEQLFSVELKKRQAVWRLPEFGNLAHFDPQNGLASIA 60
Query: 323 TLKHNLTIVTNRSNDTAAVYQXXXXXXXXXXXXI-------LGHPLPLICPVDSIFPPVI 481
+K +L ++ RSN T A+ + LG P LIC VD+IFPPVI
Sbjct: 61 VIKAHLDVLVERSNRTRAINGTHLSSPLPPRVAVLPKFRVELGQPNVLICIVDNIFPPVI 120
Query: 482 NIAWFEIGLSV-EGFSDTIFLSYNDLSFLNISYLTFLP 592
NI W G + EG + T F S D F YLTF+P
Sbjct: 121 NITWLRNGQIISEGVAQTSFYSQPDHLFRKFCYLTFVP 158
Score = 46.2 bits (108), Expect(3) = 8e-34
Identities = 16/20 (80%), Positives = 18/20 (90%)
Frame = +3
Query: 609 YDCQVEHWGLDNPLLTHWEP 668
YDC+VEHWGL+ PLL HWEP
Sbjct: 164 YDCKVEHWGLEEPLLRHWEP 183
Score = 20.8 bits (42), Expect(3) = 8e-34
Identities = 7/19 (36%), Positives = 11/19 (57%)
Frame = +1
Query: 667 PEIPAPMS*LTETAVCPPG 723
P++P P+ ET +C G
Sbjct: 183 PQVPIPVPDTIETLICALG 201
>ref|NP_001011723.1| MHC class II DR alpha chain [Canis familiaris]
Length = 254
Score = 109 bits (273), Expect(2) = 3e-31
Identities = 67/156 (42%), Positives = 79/156 (50%), Gaps = 1/156 (0%)
Frame = +2
Query: 128 IAADHVASYGLYVYQPYRPSGYFTHEFDGDEEFYGDLEKIETVWRVPLFTEFTSFDPQGA 307
+ +HV + P PSG F +FDGDE F+ D+EK ETVWR+ F F SF+ QGA
Sbjct: 26 VKEEHVIIQAEFYLTP-DPSGEFMFDFDGDEIFHVDMEKKETVWRLEEFGRFASFEAQGA 84
Query: 308 LRNIATLKHNLTIVTNRSNDTAAVYQXXXXXXXXXXXXILGHPLPLICPVDSIFPPVINI 487
L NIA K NL + RSN T LG P LIC +D PPVIN+
Sbjct: 85 LANIAVDKANLDTMIKRSNHTPNTNVPPEVTVLSNTPVELGEPNILICFIDKFSPPVINV 144
Query: 488 AWFEIGLSV-EGFSDTIFLSYNDLSFLNISYLTFLP 592
W G V G S+TIFL D F YL FLP
Sbjct: 145 TWLRNGNPVTTGVSETIFLPREDHLFRKFHYLPFLP 180
Score = 45.1 bits (105), Expect(2) = 3e-31
Identities = 16/19 (84%), Positives = 17/19 (89%)
Frame = +3
Query: 609 YDCQVEHWGLDNPLLTHWE 665
YDC+VEHWGLD PLL HWE
Sbjct: 186 YDCKVEHWGLDEPLLKHWE 204
>ref|XP_532104.2| PREDICTED: similar to HLA class II histocompatibility antigen, DO
alpha chain precursor (MHC class II antigen DOA) (MHC DZ
alpha) (MHC DN-alpha) isoform 10 [Canis familiaris]
Length = 142
Score = 84.7 bits (208), Expect = 2e-16
Identities = 40/84 (47%), Positives = 53/84 (63%)
Frame = +2
Query: 128 IAADHVASYGLYVYQPYRPSGYFTHEFDGDEEFYGDLEKIETVWRVPLFTEFTSFDPQGA 307
I ADH+ SYG YQ Y SG F HEFDG++ F +L+K + VWR+P F FDPQ
Sbjct: 12 IEADHMGSYGPAFYQSYGSSGQFAHEFDGEQLFSVELKKRQAVWRLPEFGNLAHFDPQNG 71
Query: 308 LRNIATLKHNLTIVTNRSNDTAAV 379
L +IA +K +L ++ RSN T A+
Sbjct: 72 LASIAVIKAHLDVLVERSNRTRAI 95
Database: RefSeqCP
Posted date: Aug 1, 2006 9:25 PM
Number of letters in database: 19,266,565
Number of sequences in database: 33,732
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 37,740,455
Number of Sequences: 33732
Number of extensions: 983987
Number of successful extensions: 5003
Number of sequences better than 1.0e-05: 4
Number of HSP's better than 0.0 without gapping: 3775
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4921
length of database: 19,266,565
effective HSP length: 105
effective length of database: 15,724,705
effective search space used: 4638787975
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)