Animal-Genome cDNA 20060611S-030165


Search to RefSeqBP

BLASTX 2.2.10 [Oct-19-2004]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20060611S-030165
         (1194 letters)

Database: RefSeqBP 
           33,508 sequences; 16,112,626 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|XP_608583.2| PREDICTED: similar to CG7568-PA [Bos taurus]         142   7e-34
Alignment   gi|XP_603483.2| PREDICTED: similar to WD repeat domain 51B [Bos...   134   1e-31
Alignment   gi|XP_594126.2| PREDICTED: similar to TBP-associated factor 5 [...   134   1e-31
Alignment   gi|XP_587553.2| PREDICTED: similar to TAF5-like RNA polymerase ...   125   9e-29
Alignment   gi|NP_777088.1| platelet-activating factor acetylhydrolase, iso...   125   9e-29
Alignment   gi|XP_582098.2| PREDICTED: similar to TAF5-like RNA polymerase ...   124   2e-28
Alignment   gi|XP_603152.1| PREDICTED: similar to TAF5-like RNA polymerase ...   119   4e-27
Alignment   gi|NP_001029502.1| hypothetical protein LOC508735 [Bos taurus]       113   3e-25
Alignment   gi|NP_001014887.1| Notchless gene homolog [Bos taurus]               113   3e-25
Alignment   gi|XP_612428.2| PREDICTED: similar to F-box and WD-40 domain pr...   110   3e-24

>ref|XP_608583.2| PREDICTED: similar to CG7568-PA [Bos taurus]
          Length = 441

 Score =  142 bits (357), Expect = 7e-34
 Identities = 76/233 (32%), Positives = 121/233 (51%), Gaps = 1/233 (0%)
 Frame = +1

Query: 175 FSPDGRLFASTSSDCTIRLWDVAKVECLQVLKGHQRSVETVSFSPDSKQLASGGWDKRVM 354
           F+P   L A+ S D T +LWD+   E +  L GH   + ++SF+    ++ +G +D  V 
Sbjct: 211 FNPQSTLVATGSMDTTAKLWDIQSGEEVFTLTGHSAEIISLSFNTSGNRIITGSFDHTVT 270

Query: 355 LWEVQSGQVLRHLVGHRDSIQSSDFAPSSDCLATGSWDSTIRMWDLRGGTGAIFHQELEG 534
           +WE  +G+ +  L+GH   I S+ F      + TGS D T ++WD   G        L G
Sbjct: 271 VWEADTGRKVYTLIGHCAEISSAVFNWDCSLILTGSMDKTCKLWDAVNGKCVA---TLTG 327

Query: 535 HRGNISCLCFSAFG-LLASGSWDKTIHIWKPSTRSLLVQLKGHVTWVKSIAFSPDGLQLA 711
           H   I   CF   G L+A+ S D T  I+  +TR  + +L+GH   +  I+F+P G +L 
Sbjct: 328 HDDEILDSCFDYTGKLIATASADGTARIFSAATRECVTKLEGHEGEISKISFNPQGNRLL 387

Query: 712 SAGYSHTVKVWDCNTGRCTDTLKGVLDVAHSCAFTPDGKLLVSGTADQARCQV 870
           +     T ++WD  TG+C   L+G  D   SCAF   G ++++G+ D   C++
Sbjct: 388 TGSSDKTARIWDAQTGQCLQVLEGHTDEIFSCAFNYKGDIIITGSKDNT-CRI 439



 Score =  130 bits (328), Expect = 2e-30
 Identities = 76/234 (32%), Positives = 115/234 (49%), Gaps = 2/234 (0%)
 Frame = +1

Query: 157 PVKFCRFSPDGRLFASTSSDCTIRLWDVAKVECLQVLKGHQRSVETVSF-SPDSKQLASG 333
           P+     +  G  F + S D T +LWD A  E L  L+GH+  V  ++F +P   ++A+G
Sbjct: 120 PLTNVALNKSGSCFITGSYDRTCKLWDTASGEELHTLEGHRNVVYAIAFNNPYGDKIATG 179

Query: 334 GWDKRVMLWEVQSGQVLRHLVGHRDSIQSSDFAPSSDCLATGSWDSTIRMWDLRGGTGAI 513
            +DK   LW V++G+      GH   I    F P S  +ATGS D+T ++WD++ G    
Sbjct: 180 SFDKTCKLWSVETGKCYHTFRGHTAEIVCLSFNPQSTLVATGSMDTTAKLWDIQSGEEVF 239

Query: 514 FHQELEGHRGNISCLCFSAFG-LLASGSWDKTIHIWKPSTRSLLVQLKGHVTWVKSIAFS 690
               L GH   I  L F+  G  + +GS+D T+ +W+  T   +  L GH   + S  F+
Sbjct: 240 ---TLTGHSAEIISLSFNTSGNRIITGSFDHTVTVWEADTGRKVYTLIGHCAEISSAVFN 296

Query: 691 PDGLQLASAGYSHTVKVWDCNTGRCTDTLKGVLDVAHSCAFTPDGKLLVSGTAD 852
            D   + +     T K+WD   G+C  TL G  D      F   GKL+ + +AD
Sbjct: 297 WDCSLILTGSMDKTCKLWDAVNGKCVATLTGHDDEILDSCFDYTGKLIATASAD 350



 Score =  111 bits (277), Expect = 1e-24
 Identities = 65/206 (31%), Positives = 105/206 (50%), Gaps = 2/206 (0%)
 Frame = +1

Query: 244 KVECLQVLKGHQRSVETVSFSPDSKQLASGGWDKRVMLWEVQSGQVLRHLVGHRDSIQSS 423
           K    +VL+ H   +  V+ +       +G +D+   LW+  SG+ L  L GHR+ + + 
Sbjct: 107 KFYLFKVLRAHILPLTNVALNKSGSCFITGSYDRTCKLWDTASGEELHTLEGHRNVVYAI 166

Query: 424 DF-APSSDCLATGSWDSTIRMWDLRGGTGAIFHQELEGHRGNISCLCFSAFG-LLASGSW 597
            F  P  D +ATGS+D T ++W +   TG  +H    GH   I CL F+    L+A+GS 
Sbjct: 167 AFNNPYGDKIATGSFDKTCKLWSVE--TGKCYH-TFRGHTAEIVCLSFNPQSTLVATGSM 223

Query: 598 DKTIHIWKPSTRSLLVQLKGHVTWVKSIAFSPDGLQLASAGYSHTVKVWDCNTGRCTDTL 777
           D T  +W   +   +  L GH   + S++F+  G ++ +  + HTV VW+ +TGR   TL
Sbjct: 224 DTTAKLWDIQSGEEVFTLTGHSAEIISLSFNTSGNRIITGSFDHTVTVWEADTGRKVYTL 283

Query: 778 KGVLDVAHSCAFTPDGKLLVSGTADQ 855
            G      S  F  D  L+++G+ D+
Sbjct: 284 IGHCAEISSAVFNWDCSLILTGSMDK 309



 Score = 86.7 bits (213), Expect = 3e-17
 Identities = 41/104 (39%), Positives = 61/104 (58%)
 Frame = +1

Query: 175 FSPDGRLFASTSSDCTIRLWDVAKVECLQVLKGHQRSVETVSFSPDSKQLASGGWDKRVM 354
           F   G+L A+ S+D T R++  A  EC+  L+GH+  +  +SF+P   +L +G  DK   
Sbjct: 337 FDYTGKLIATASADGTARIFSAATRECVTKLEGHEGEISKISFNPQGNRLLTGSSDKTAR 396

Query: 355 LWEVQSGQVLRHLVGHRDSIQSSDFAPSSDCLATGSWDSTIRMW 486
           +W+ Q+GQ L+ L GH D I S  F    D + TGS D+T R+W
Sbjct: 397 IWDAQTGQCLQVLEGHTDEIFSCAFNYKGDIIITGSKDNTCRIW 440


>ref|XP_603483.2| PREDICTED: similar to WD repeat domain 51B [Bos taurus]
          Length = 495

 Score =  134 bits (338), Expect = 1e-31
 Identities = 73/198 (36%), Positives = 105/198 (53%), Gaps = 3/198 (1%)
 Frame = +1

Query: 268 KGHQRSVETVSFSPDSKQLASGGWDKRVMLWEVQSGQVLRHLVGHRDSIQSSDFAPSSDC 447
           KGH+ ++ +V FSP+ KQLA+G WD  +MLW ++        VGH+D I S  F+P  + 
Sbjct: 32  KGHKAAITSVDFSPNGKQLATGSWDTFLMLWSLRPQARAFRYVGHKDVITSVQFSPLGNL 91

Query: 448 LATGSWDSTIRMW--DLRGGTGAIFHQELEGHRGNISCLCFSAFG-LLASGSWDKTIHIW 618
           LA+ S D TIR+W  D RG +      E + H   +  + FSA G  LAS S DK+I +W
Sbjct: 92  LASASRDRTIRLWIPDKRGKS-----SEFKAHTAPVRSVDFSADGQFLASASEDKSIKVW 146

Query: 619 KPSTRSLLVQLKGHVTWVKSIAFSPDGLQLASAGYSHTVKVWDCNTGRCTDTLKGVLDVA 798
               +  L  L  H  WV+   FSPDG  + S     T+K+WD    +C +     +  A
Sbjct: 147 NMYRQRFLYSLYRHTHWVRCAKFSPDGRLIVSCSEDKTIKIWDTTNKQCVNNFSDFVGFA 206

Query: 799 HSCAFTPDGKLLVSGTAD 852
           +  AF P+G  + S  +D
Sbjct: 207 NFVAFNPNGTCIASAGSD 224



 Score =  107 bits (268), Expect = 1e-23
 Identities = 75/265 (28%), Positives = 115/265 (43%), Gaps = 13/265 (4%)
 Frame = +1

Query: 97  GPRDAGGGESEILLPAPRGGPV------------KFCRFSPDGRLFASTSSDCTIRLWDV 240
           GP  AGG  + +  P     PV                FSP+G+  A+ S D  + LW +
Sbjct: 5   GPAPAGGDRAPLRPPTFEEDPVLERYFKGHKAAITSVDFSPNGKQLATGSWDTFLMLWSL 64

Query: 241 AKVECLQVLKGHQRSVETVSFSPDSKQLASGGWDKRVMLWEVQSGQVLRHLVGHRDSIQS 420
                     GH+  + +V FSP    LAS   D+ + LW             H   ++S
Sbjct: 65  RPQARAFRYVGHKDVITSVQFSPLGNLLASASRDRTIRLWIPDKRGKSSEFKAHTAPVRS 124

Query: 421 SDFAPSSDCLATGSWDSTIRMWDLRGGTGAIFHQELEGHRGNISCLCFSAFG-LLASGSW 597
            DF+     LA+ S D +I++W++       F   L  H   + C  FS  G L+ S S 
Sbjct: 125 VDFSADGQFLASASEDKSIKVWNMYRQR---FLYSLYRHTHWVRCAKFSPDGRLIVSCSE 181

Query: 598 DKTIHIWKPSTRSLLVQLKGHVTWVKSIAFSPDGLQLASAGYSHTVKVWDCNTGRCTDTL 777
           DKTI IW  + +  +      V +   +AF+P+G  +ASAG  HTVK+WD    +     
Sbjct: 182 DKTIKIWDTTNKQCVNNFSDFVGFANFVAFNPNGTCIASAGSDHTVKIWDIRVNKLLQHY 241

Query: 778 KGVLDVAHSCAFTPDGKLLVSGTAD 852
           +      +  +F P G  L++ ++D
Sbjct: 242 QVHSGGVNCVSFHPSGNYLITASSD 266



 Score =  106 bits (265), Expect = 3e-23
 Identities = 73/228 (32%), Positives = 104/228 (45%), Gaps = 1/228 (0%)
 Frame = +1

Query: 172 RFSPDGRLFASTSSDCTIRLWDVAKVECLQVLKGHQRSVETVSFSPDSKQLASGGWDKRV 351
           +FSP G L AS S D TIRLW   K       K H   V +V FS D + LAS   DK +
Sbjct: 84  QFSPLGNLLASASRDRTIRLWIPDKRGKSSEFKAHTAPVRSVDFSADGQFLASASEDKSI 143

Query: 352 MLWEVQSGQVLRHLVGHRDSIQSSDFAPSSDCLATGSWDSTIRMWDLRGGTGAIFHQELE 531
            +W +   + L  L  H   ++ + F+P    + + S D TI++WD    T         
Sbjct: 144 KVWNMYRQRFLYSLYRHTHWVRCAKFSPDGRLIVSCSEDKTIKIWDT---TNKQCVNNFS 200

Query: 532 GHRGNISCLCFSAFG-LLASGSWDKTIHIWKPSTRSLLVQLKGHVTWVKSIAFSPDGLQL 708
              G  + + F+  G  +AS   D T+ IW      LL   + H   V  ++F P G  L
Sbjct: 201 DFVGFANFVAFNPNGTCIASAGSDHTVKIWDIRVNKLLQHYQVHSGGVNCVSFHPSGNYL 260

Query: 709 ASAGYSHTVKVWDCNTGRCTDTLKGVLDVAHSCAFTPDGKLLVSGTAD 852
            +A    T+K+ D   GR   TL+G      + +F+  G+L  SG AD
Sbjct: 261 ITASSDGTLKILDLLEGRLIYTLQGHTGPVFTVSFSKGGELFTSGGAD 308



 Score =  103 bits (257), Expect = 3e-22
 Identities = 61/158 (38%), Positives = 86/158 (54%), Gaps = 1/158 (0%)
 Frame = +1

Query: 385 RHLVGHRDSIQSSDFAPSSDCLATGSWDSTIRMWDLRGGTGAIFHQELEGHRGNISCLCF 564
           R+  GH+ +I S DF+P+   LATGSWD+ + +W LR    A       GH+  I+ + F
Sbjct: 29  RYFKGHKAAITSVDFSPNGKQLATGSWDTFLMLWSLRPQARAF---RYVGHKDVITSVQF 85

Query: 565 SAFG-LLASGSWDKTIHIWKPSTRSLLVQLKGHVTWVKSIAFSPDGLQLASAGYSHTVKV 741
           S  G LLAS S D+TI +W P  R    + K H   V+S+ FS DG  LASA    ++KV
Sbjct: 86  SPLGNLLASASRDRTIRLWIPDKRGKSSEFKAHTAPVRSVDFSADGQFLASASEDKSIKV 145

Query: 742 WDCNTGRCTDTLKGVLDVAHSCAFTPDGKLLVSGTADQ 855
           W+    R   +L           F+PDG+L+VS + D+
Sbjct: 146 WNMYRQRFLYSLYRHTHWVRCAKFSPDGRLIVSCSEDK 183



 Score = 95.1 bits (235), Expect = 9e-20
 Identities = 58/200 (29%), Positives = 93/200 (46%), Gaps = 1/200 (0%)
 Frame = +1

Query: 157 PVKFCRFSPDGRLFASTSSDCTIRLWDVAKVECLQVLKGHQRSVETVSFSPDSKQLASGG 336
           PV+   FS DG+  AS S D +I++W++ +   L  L  H   V    FSPD + + S  
Sbjct: 121 PVRSVDFSADGQFLASASEDKSIKVWNMYRQRFLYSLYRHTHWVRCAKFSPDGRLIVSCS 180

Query: 337 WDKRVMLWEVQSGQVLRHLVGHRDSIQSSDFAPSSDCLATGSWDSTIRMWDLRGGTGAIF 516
            DK + +W+  + Q + +            F P+  C+A+   D T+++WD+R       
Sbjct: 181 EDKTIKIWDTTNKQCVNNFSDFVGFANFVAFNPNGTCIASAGSDHTVKIWDIRVNK---L 237

Query: 517 HQELEGHRGNISCLCFSAFG-LLASGSWDKTIHIWKPSTRSLLVQLKGHVTWVKSIAFSP 693
            Q  + H G ++C+ F   G  L + S D T+ I       L+  L+GH   V +++FS 
Sbjct: 238 LQHYQVHSGGVNCVSFHPSGNYLITASSDGTLKILDLLEGRLIYTLQGHTGPVFTVSFSK 297

Query: 694 DGLQLASAGYSHTVKVWDCN 753
            G    S G    V +W  N
Sbjct: 298 GGELFTSGGADAQVLLWRTN 317



 Score = 62.8 bits (151), Expect = 5e-10
 Identities = 30/111 (27%), Positives = 54/111 (48%)
 Frame = +1

Query: 154 GPVKFCRFSPDGRLFASTSSDCTIRLWDVAKVECLQVLKGHQRSVETVSFSPDSKQLASG 333
           G   F  F+P+G   AS  SD T+++WD+   + LQ  + H   V  VSF P    L + 
Sbjct: 204 GFANFVAFNPNGTCIASAGSDHTVKIWDIRVNKLLQHYQVHSGGVNCVSFHPSGNYLITA 263

Query: 334 GWDKRVMLWEVQSGQVLRHLVGHRDSIQSSDFAPSSDCLATGSWDSTIRMW 486
             D  + + ++  G+++  L GH   + +  F+   +   +G  D+ + +W
Sbjct: 264 SSDGTLKILDLLEGRLIYTLQGHTGPVFTVSFSKGGELFTSGGADAQVLLW 314


>ref|XP_594126.2| PREDICTED: similar to TBP-associated factor 5 [Bos taurus]
          Length = 800

 Score =  134 bits (337), Expect = 1e-31
 Identities = 82/210 (39%), Positives = 107/210 (50%), Gaps = 2/210 (0%)
 Frame = +1

Query: 124  SEILLPAPRGGPVKFCRFSPDGRLFASTSSDCTIRLWDVAKVECLQVLKGHQRSVETVSF 303
            SE+ +     GPV    FSPD     S+S D T+RLW +    CL   KGH   V    F
Sbjct: 534  SELKILYGHSGPVYGASFSPDRNYLLSSSEDGTVRLWSLQTFTCLVGYKGHNYPVWDTQF 593

Query: 304  SPDSKQLASGGWDKRVMLWEVQSGQVLRHLVGHRDSIQSSDFAPSSDCLATGSWDSTIRM 483
            SP      SGG D+   LW     Q LR   GH   +  + F P+S+ +ATGS D T+R+
Sbjct: 594  SPYGYYFVSGGHDRVARLWATDHYQPLRIFAGHLADVNCTRFHPNSNYVATGSADRTVRL 653

Query: 484  WD-LRGGTGAIFHQELEGHRGNISCLCFSAFG-LLASGSWDKTIHIWKPSTRSLLVQLKG 657
            WD L G    IF     GH+G I  L FS  G  LA+G+ D  + +W      ++ +LKG
Sbjct: 654  WDVLNGNCVRIF----TGHKGPIHSLTFSPNGRFLATGATDGRVLLWDIGHGLMVGELKG 709

Query: 658  HVTWVKSIAFSPDGLQLASAGYSHTVKVWD 747
            H   V S+ FS DG  LAS    +TV++WD
Sbjct: 710  HTDTVCSLRFSRDGEILASGSMDNTVRLWD 739



 Score =  101 bits (252), Expect = 1e-21
 Identities = 69/228 (30%), Positives = 99/228 (43%), Gaps = 5/228 (2%)
 Frame = +1

Query: 184  DGRLFASTSSDCTIRLWDVAKVECLQVLKGHQRSVETVSFSPDSKQLASGGWDKRVMLWE 363
            D  L    S D   R+ D      L++L GH   V   SFSPD   L S   D  V LW 
Sbjct: 512  DLSLIDKESDDVLERIMDEKTASELKILYGHSGPVYGASFSPDRNYLLSSSEDGTVRLWS 571

Query: 364  VQSGQVLRHLVGHRDSIQSSDFAPSSDCLATGSWDSTIRMWDLRGGTGAIFHQE----LE 531
            +Q+   L    GH   +  + F+P      +G  D   R+W       A  H +      
Sbjct: 572  LQTFTCLVGYKGHNYPVWDTQFSPYGYYFVSGGHDRVARLW-------ATDHYQPLRIFA 624

Query: 532  GHRGNISCLCFSA-FGLLASGSWDKTIHIWKPSTRSLLVQLKGHVTWVKSIAFSPDGLQL 708
            GH  +++C  F      +A+GS D+T+ +W     + +    GH   + S+ FSP+G  L
Sbjct: 625  GHLADVNCTRFHPNSNYVATGSADRTVRLWDVLNGNCVRIFTGHKGPIHSLTFSPNGRFL 684

Query: 709  ASAGYSHTVKVWDCNTGRCTDTLKGVLDVAHSCAFTPDGKLLVSGTAD 852
            A+      V +WD   G     LKG  D   S  F+ DG++L SG+ D
Sbjct: 685  ATGATDGRVLLWDIGHGLMVGELKGHTDTVCSLRFSRDGEILASGSMD 732



 Score = 52.8 bits (125), Expect = 5e-07
 Identities = 57/243 (23%), Positives = 83/243 (34%), Gaps = 43/243 (17%)
 Frame = +1

Query: 253  CLQVLKGHQRSVETVSFSPDSKQLASGGWDKRVMLWEVQSGQVLRHLVGHRDSIQSSDFA 432
            C        + +  V  + DS  +A G  D  V +W V   ++       R   Q++D +
Sbjct: 462  CFYTFLNAYQGLTAVDVTDDSSLIAGGFADSTVRVWSVTPKKL-------RSVKQAADLS 514

Query: 433  PSSDCLATGSWDSTIRMWDLRGGTGAIFHQELEGHRGNISCLCFSAF-GLLASGSWDKTI 609
                 +   S D   R+ D +  +     + L GH G +    FS     L S S D T+
Sbjct: 515  ----LIDKESDDVLERIMDEKTASEL---KILYGHSGPVYGASFSPDRNYLLSSSEDGTV 567

Query: 610  HIWKPSTRSLLVQLKGHVTWVKSIAFSPDGLQLASAGY---------------------- 723
             +W   T + LV  KGH   V    FSP G    S G+                      
Sbjct: 568  RLWSLQTFTCLVGYKGHNYPVWDTQFSPYGYYFVSGGHDRVARLWATDHYQPLRIFAGHL 627

Query: 724  --------------------SHTVKVWDCNTGRCTDTLKGVLDVAHSCAFTPDGKLLVSG 843
                                  TV++WD   G C     G     HS  F+P+G+ L +G
Sbjct: 628  ADVNCTRFHPNSNYVATGSADRTVRLWDVLNGNCVRIFTGHKGPIHSLTFSPNGRFLATG 687

Query: 844  TAD 852
              D
Sbjct: 688  ATD 690


>ref|XP_587553.2| PREDICTED: similar to TAF5-like RNA polymerase II
           p300/CBP-associated factor-associated factor 65 kDa
           subunit 5L (PCAF-associated factor 65 beta) (PAF65-beta)
           [Bos taurus]
          Length = 310

 Score =  125 bits (313), Expect = 9e-29
 Identities = 72/211 (34%), Positives = 102/211 (48%), Gaps = 1/211 (0%)
 Frame = +1

Query: 154 GPVKFCRFSPDGRLFASTSSDCTIRLWDVAKVECLQVLKGHQRSVETVSFSPDSKQLASG 333
           GPV   RF  D     S S D +IR WD+       + +GH   V  +  SP S   AS 
Sbjct: 64  GPVYSTRFLADSSGLLSCSEDMSIRYWDLGSFTNTVLYQGHAYPVWDLDISPHSLYFASA 123

Query: 334 GWDKRVMLWEVQSGQVLRHLVGHRDSIQSSDFAPSSDCLATGSWDSTIRMWDLRGGTGAI 513
             D+   LW       LR   GH   +    F P+S+ LATGS D T+R+W  + G    
Sbjct: 124 SHDRTARLWSFDRTYPLRIYAGHLADVDCVKFHPNSNYLATGSTDKTVRLWSTQQGNSV- 182

Query: 514 FHQELEGHRGNISCLCFSAFG-LLASGSWDKTIHIWKPSTRSLLVQLKGHVTWVKSIAFS 690
             +   GHRG +  L FS  G  LAS   D+ + +W  ++ +L  +L+GH   + S+ FS
Sbjct: 183 --RLFTGHRGPVLSLAFSPNGKYLASAGEDQRLKLWDLASGTLYKELRGHTDNITSLTFS 240

Query: 691 PDGLQLASAGYSHTVKVWDCNTGRCTDTLKG 783
           PD   +ASA   ++V+VWD  +  C+    G
Sbjct: 241 PDSSLVASASMDNSVRVWDIRSSHCSTPADG 271



 Score = 98.2 bits (243), Expect = 1e-20
 Identities = 67/216 (31%), Positives = 98/216 (45%), Gaps = 6/216 (2%)
 Frame = +1

Query: 256 LQVLKGHQRSVETVSFSPDSKQLASGGWDKRVMLWEVQSGQVLRHLVGHRDSIQSSDFAP 435
           ++VL+GH   V +  F  DS  L S   D  +  W++ S        GH   +   D +P
Sbjct: 56  MKVLRGHCGPVYSTRFLADSSGLLSCSEDMSIRYWDLGSFTNTVLYQGHAYPVWDLDISP 115

Query: 436 SSDCLATGSWDSTIRMWDLRGGTGAIFHQELEGHRGNISCLCFSA-FGLLASGSWDKTIH 612
            S   A+ S D T R+W          +    GH  ++ C+ F      LA+GS DKT+ 
Sbjct: 116 HSLYFASASHDRTARLWSFDRTYPLRIYA---GHLADVDCVKFHPNSNYLATGSTDKTVR 172

Query: 613 IWKPSTRSLLVQLKGHVTWVKSIAFSPDGLQLASAGYSHTVKVWDCNTGRCTDTLKGVLD 792
           +W     + +    GH   V S+AFSP+G  LASAG    +K+WD  +G     L+G  D
Sbjct: 173 LWSTQQGNSVRLFTGHRGPVLSLAFSPNGKYLASAGEDQRLKLWDLASGTLYKELRGHTD 232

Query: 793 VAHSCAFTPDGKLLVSGTADQA-----RCQVHCKSP 885
              S  F+PD  L+ S + D +         HC +P
Sbjct: 233 NITSLTFSPDSSLVASASMDNSVRVWDIRSSHCSTP 268



 Score = 95.9 bits (237), Expect = 6e-20
 Identities = 49/145 (33%), Positives = 82/145 (56%), Gaps = 8/145 (5%)
 Frame = +1

Query: 172 RFSPDGRLFASTSSDCTIRLWDVAKVECLQVLKGHQRSVETVSFSPDSKQLASGGWDKRV 351
           +F P+    A+ S+D T+RLW   +   +++  GH+  V +++FSP+ K LAS G D+R+
Sbjct: 154 KFHPNSNYLATGSTDKTVRLWSTQQGNSVRLFTGHRGPVLSLAFSPNGKYLASAGEDQRL 213

Query: 352 MLWEVQSGQVLRHLVGHRDSIQSSDFAPSSDCLATGSWDSTIRMWDLRG--------GTG 507
            LW++ SG + + L GH D+I S  F+P S  +A+ S D+++R+WD+R         G+ 
Sbjct: 214 KLWDLASGTLYKELRGHTDNITSLTFSPDSSLVASASMDNSVRVWDIRSSHCSTPADGSS 273

Query: 508 AIFHQELEGHRGNISCLCFSAFGLL 582
           +       G   N+  + F A  LL
Sbjct: 274 SELVGVYTGQMSNVLSVQFMACNLL 298


>ref|NP_777088.1| platelet-activating factor acetylhydrolase, isoform Ib, alpha
           subunit (45kD) [Bos taurus]
          Length = 410

 Score =  125 bits (313), Expect = 9e-29
 Identities = 76/248 (30%), Positives = 114/248 (45%), Gaps = 21/248 (8%)
 Frame = +1

Query: 175 FSPDGRLFASTSSDCTIRLWDVAKVECLQVLKGHQRSVETVSFSPDSKQLASGGWDKRVM 354
           F   G+L AS S+D TI+LWD    EC++ + GH  +V +V+  P+   + S   DK + 
Sbjct: 158 FDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVAIMPNGDHIVSASRDKTIK 217

Query: 355 LWEVQSGQVLRHLVGHRDSIQSSDFAPSSDCLATGSWDSTIRMWDLRGGTGAIFHQELEG 534
           +WEVQ+G  ++   GHR+ ++          +A+ S D T+R+W +          EL  
Sbjct: 218 MWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVV---ATKECKAELRE 274

Query: 535 HRGNISCLCFS----------AFG-----------LLASGSWDKTIHIWKPSTRSLLVQL 651
           H   + C+ ++          A G            L SGS DKTI +W  ST   L+ L
Sbjct: 275 HEHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTL 334

Query: 652 KGHVTWVKSIAFSPDGLQLASAGYSHTVKVWDCNTGRCTDTLKGVLDVAHSCAFTPDGKL 831
            GH  WV+ + F   G  + S     T++VWD    RC  TL        S  F      
Sbjct: 335 VGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPY 394

Query: 832 LVSGTADQ 855
           +V+G+ DQ
Sbjct: 395 VVTGSVDQ 402



 Score =  114 bits (285), Expect = 2e-25
 Identities = 76/254 (29%), Positives = 120/254 (47%), Gaps = 21/254 (8%)
 Frame = +1

Query: 157 PVKFCRFSPDGRLFASTSSDCTIRLWDVAKVECLQVLKGHQRSVETVSFSPDSKQLASGG 336
           PV    F P   +  S S D TI++WD    +  + LKGH  SVE +SF    K LAS  
Sbjct: 110 PVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVEDISFDHSGKLLASCS 169

Query: 337 WDKRVMLWEVQSGQVLRHLVGHRDSIQSSDFAPSSDCLATGSWDSTIRMWDLRGGTGAIF 516
            D  + LW+ Q  + +R + GH  ++ S    P+ D + + S D TI+MW+++ G     
Sbjct: 170 ADMTIKLWDFQGFECIRTMHGHDHNVSSVAIMPNGDHIVSASRDKTIKMWEVQTGYCV-- 227

Query: 517 HQELEGHRGNISCLCFSAFG-LLASGSWDKTIHIWKPSTRSLLVQLKGHVTWVKSIAFSP 693
            +   GHR  +  +  +  G L+AS S D+T+ +W  +T+    +L+ H   V+ I+++P
Sbjct: 228 -KTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHEHVVECISWAP 286

Query: 694 D--------------------GLQLASAGYSHTVKVWDCNTGRCTDTLKGVLDVAHSCAF 813
           +                    G  L S     T+K+WD +TG C  TL G  +      F
Sbjct: 287 ESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLF 346

Query: 814 TPDGKLLVSGTADQ 855
              GK ++S   D+
Sbjct: 347 HSGGKFILSCADDK 360



 Score = 96.7 bits (239), Expect = 3e-20
 Identities = 58/187 (31%), Positives = 88/187 (47%), Gaps = 1/187 (0%)
 Frame = +1

Query: 265 LKGHQRSVETVSFSPDSKQLASGGWDKRVMLWEVQSGQVLRHLVGHRDSIQSSDFAPSSD 444
           L GH+  V  V F P    + S   D  + +W+ ++G   R L GH DS++   F  S  
Sbjct: 104 LSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVEDISFDHSGK 163

Query: 445 CLATGSWDSTIRMWDLRGGTGAIFHQELEGHRGNISCLCFSAFG-LLASGSWDKTIHIWK 621
            LA+ S D TI++WD +G       + + GH  N+S +     G  + S S DKTI +W+
Sbjct: 164 LLASCSADMTIKLWDFQGFECI---RTMHGHDHNVSSVAIMPNGDHIVSASRDKTIKMWE 220

Query: 622 PSTRSLLVQLKGHVTWVKSIAFSPDGLQLASAGYSHTVKVWDCNTGRCTDTLKGVLDVAH 801
             T   +    GH  WV+ +  + DG  +AS     TV+VW   T  C   L+    V  
Sbjct: 221 VQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHEHVVE 280

Query: 802 SCAFTPD 822
             ++ P+
Sbjct: 281 CISWAPE 287



 Score = 67.4 bits (163), Expect = 2e-11
 Identities = 34/103 (33%), Positives = 54/103 (52%)
 Frame = +1

Query: 187 GRLFASTSSDCTIRLWDVAKVECLQVLKGHQRSVETVSFSPDSKQLASGGWDKRVMLWEV 366
           G    S S D TI++WDV+   CL  L GH   V  V F    K + S   DK + +W+ 
Sbjct: 308 GPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDY 367

Query: 367 QSGQVLRHLVGHRDSIQSSDFAPSSDCLATGSWDSTIRMWDLR 495
           ++ + ++ L  H   + S DF  ++  + TGS D T+++W+ R
Sbjct: 368 KNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWECR 410


>ref|XP_582098.2| PREDICTED: similar to TAF5-like RNA polymerase II
           p300/CBP-associated factor-associated factor 65 kDa
           subunit 5L (PCAF-associated factor 65 beta) (PAF65-beta)
           [Bos taurus]
          Length = 577

 Score =  124 bits (310), Expect = 2e-28
 Identities = 78/235 (33%), Positives = 111/235 (47%), Gaps = 3/235 (1%)
 Frame = +1

Query: 88  EQRGPRDAGGGESEILLPAPRG--GPVKFCRFSPDGRLFASTSSDCTIRLWDVAKVECLQ 261
           E+    D  G E ++L    RG  GPV   RF  D     S S D +IR WD+       
Sbjct: 311 EEDDEDDNAGTEMKVL----RGHCGPVYSTRFLADSSGLLSCSEDMSIRYWDLGSFTNTV 366

Query: 262 VLKGHQRSVETVSFSPDSKQLASGGWDKRVMLWEVQSGQVLRHLVGHRDSIQSSDFAPSS 441
           + +GH   V  +  SP S   ASG  D+   LW       LR   GH   +    F P+S
Sbjct: 367 LYQGHAYPVWDLDISPHSLYFASGSHDRTARLWSFDRTYPLRIFAGHLADVDCVKFHPNS 426

Query: 442 DCLATGSWDSTIRMWDLRGGTGAIFHQELEGHRGNISCLCFSAFG-LLASGSWDKTIHIW 618
           + LATGS D T+R+W  + G      +   GHRG +  L FS     LAS   D+ + +W
Sbjct: 427 NYLATGSTDKTVRLWSTQQGNSV---RLFTGHRGPVLSLAFSPNSKYLASAGEDQRLKLW 483

Query: 619 KPSTRSLLVQLKGHVTWVKSIAFSPDGLQLASAGYSHTVKVWDCNTGRCTDTLKG 783
             ++ +L  +L+GH   + S+ FS D   +ASA   ++V+VWD  +  C+    G
Sbjct: 484 DLASGTLYKELRGHTDSITSLTFSSDSSLIASASMDNSVRVWDIRSTHCSTPADG 538



 Score = 97.8 bits (242), Expect = 1e-20
 Identities = 69/217 (31%), Positives = 99/217 (45%), Gaps = 7/217 (3%)
 Frame = +1

Query: 256 LQVLKGHQRSVETVSFSPDSKQLASGGWDKRVMLWEVQSGQVLRHLVGHRDSIQSSDFAP 435
           ++VL+GH   V +  F  DS  L S   D  +  W++ S        GH   +   D +P
Sbjct: 323 MKVLRGHCGPVYSTRFLADSSGLLSCSEDMSIRYWDLGSFTNTVLYQGHAYPVWDLDISP 382

Query: 436 SSDCLATGSWDSTIRMWDL-RGGTGAIFHQELEGHRGNISCLCFSA-FGLLASGSWDKTI 609
            S   A+GS D T R+W   R     IF     GH  ++ C+ F      LA+GS DKT+
Sbjct: 383 HSLYFASGSHDRTARLWSFDRTYPLRIF----AGHLADVDCVKFHPNSNYLATGSTDKTV 438

Query: 610 HIWKPSTRSLLVQLKGHVTWVKSIAFSPDGLQLASAGYSHTVKVWDCNTGRCTDTLKGVL 789
            +W     + +    GH   V S+AFSP+   LASAG    +K+WD  +G     L+G  
Sbjct: 439 RLWSTQQGNSVRLFTGHRGPVLSLAFSPNSKYLASAGEDQRLKLWDLASGTLYKELRGHT 498

Query: 790 DVAHSCAFTPDGKLLVSGTADQA-----RCQVHCKSP 885
           D   S  F+ D  L+ S + D +         HC +P
Sbjct: 499 DSITSLTFSSDSSLIASASMDNSVRVWDIRSTHCSTP 535


>ref|XP_603152.1| PREDICTED: similar to TAF5-like RNA polymerase II p300/CBP-associated
            factor-associated factor 65 kDa subunit 5L
            (PCAF-associated factor 65 beta) (PAF65-beta) [Bos
            taurus]
          Length = 600

 Score =  119 bits (299), Expect = 4e-27
 Identities = 76/246 (30%), Positives = 112/246 (45%), Gaps = 12/246 (4%)
 Frame = +1

Query: 154  GPVKFCRFSPDGRLFASTSSDCTIRLWDVAKVECLQVLKGHQRSVETVSFSPDSKQLASG 333
            GPV   RF PD     S S D +IR WD+       + +GH   V  +  SP S   AS 
Sbjct: 354  GPVYSTRFLPDSSALLSCSEDTSIRYWDLESFTNTVLYQGHAYPVWDLDISPHSLFFASA 413

Query: 334  GWDKRVMLWEVQSGQVLRHLVGHRDSIQSSDFAPSSDCLATGSWDSTIRMWDLRGGTGAI 513
             +D    LW       LR   GH   +    F P+S+ LATGS D T+R+W  + G    
Sbjct: 414  SYDHTARLWSFDRTYPLRIYAGHLAGVDCVKFHPNSNYLATGSTDKTVRLWSAQQGNSV- 472

Query: 514  FHQELEGHRGNISCLCFSAFG-LLASGSWDKTIHIWKPSTRSLLVQLKGHVTWVKSIAFS 690
              +   GH G + CL FS  G  L S   D+ + +W  ++ +L   L GH   + S+ FS
Sbjct: 473  --RLFTGHCGPVRCLAFSPNGQYLVSAGEDQLLKLWDLASGTLYKDLHGHTDDITSVTFS 530

Query: 691  PDGLQLASAGYSHTVKVWDCNT--------GRCTDTL---KGVLDVAHSCAFTPDGKLLV 837
             D   +ASA   ++V++WD  +        G  ++ L    G +    +  F    +LLV
Sbjct: 531  LDSSVIASASMDNSVRIWDIKSKHNSTPADGSSSELLGVYTGQMSTVLNVQFMAGSRLLV 590

Query: 838  SGTADQ 855
            +G  ++
Sbjct: 591  TGIREE 596



 Score = 98.6 bits (244), Expect = 9e-21
 Identities = 71/257 (27%), Positives = 110/257 (42%), Gaps = 30/257 (11%)
 Frame = +1

Query: 178  SPDGRLFASTSSDCTIRLW-------------DVAKVECL----------------QVLK 270
            SPD +L A+  ++ +I+LW             DV+ +  +                +VL 
Sbjct: 291  SPDNKLLATGLNNSSIKLWSLTSKFKSKPHQIDVSHIHLINDTLEVDEEDRTATERKVLL 350

Query: 271  GHQRSVETVSFSPDSKQLASGGWDKRVMLWEVQSGQVLRHLVGHRDSIQSSDFAPSSDCL 450
            GH   V +  F PDS  L S   D  +  W+++S        GH   +   D +P S   
Sbjct: 351  GHCGPVYSTRFLPDSSALLSCSEDTSIRYWDLESFTNTVLYQGHAYPVWDLDISPHSLFF 410

Query: 451  ATGSWDSTIRMWDLRGGTGAIFHQELEGHRGNISCLCFSA-FGLLASGSWDKTIHIWKPS 627
            A+ S+D T R+W          +    GH   + C+ F      LA+GS DKT+ +W   
Sbjct: 411  ASASYDHTARLWSFDRTYPLRIYA---GHLAGVDCVKFHPNSNYLATGSTDKTVRLWSAQ 467

Query: 628  TRSLLVQLKGHVTWVKSIAFSPDGLQLASAGYSHTVKVWDCNTGRCTDTLKGVLDVAHSC 807
              + +    GH   V+ +AFSP+G  L SAG    +K+WD  +G     L G  D   S 
Sbjct: 468  QGNSVRLFTGHCGPVRCLAFSPNGQYLVSAGEDQLLKLWDLASGTLYKDLHGHTDDITSV 527

Query: 808  AFTPDGKLLVSGTADQA 858
             F+ D  ++ S + D +
Sbjct: 528  TFSLDSSVIASASMDNS 544


>ref|NP_001029502.1| hypothetical protein LOC508735 [Bos taurus]
          Length = 521

 Score =  113 bits (283), Expect = 3e-25
 Identities = 73/242 (30%), Positives = 110/242 (45%), Gaps = 10/242 (4%)
 Frame = +1

Query: 157 PVKFCRFSPDGRLFASTSSDCTIRLWDVAKVECLQVLKGHQRSVETVSFSPDSK------ 318
           P+ +C FSP+ ++ A+       +LW V     L  L+GH  +V  + F P S       
Sbjct: 232 PISYCHFSPNSKMLATACWSGLCKLWSVPDCNLLHTLRGHNTNVGAIVFHPKSTVSLDQK 291

Query: 319 --QLASGGWDKRVMLWEVQSGQVLRHLVGHRDSIQSSDFAPSSDCLATGSWDSTIRMWDL 492
              LAS   D  V LW + S + +  + GH   +    + PS   L T  +D + R+WDL
Sbjct: 292 DVNLASCAADGSVKLWSLDSDEPVADIEGHTVRVARVTWHPSGRFLGTTCYDRSWRLWDL 351

Query: 493 RGGTGAIFHQELEGHRGNISCLCFSAFGLLA-SGSWDKTIHIWKPSTRSLLVQLKGHVTW 669
                 I HQ  EGH   +  + F   G LA +G  D    +W   T   ++ L+GH+  
Sbjct: 352 E-AQEEILHQ--EGHSMGVYDIAFHQDGSLAGTGGLDAFGRVWDLRTGRCIMFLEGHLKE 408

Query: 670 VKSIAFSPDGLQLASAGYSHTVKVWDCNTGRCTDTLKGVLDVAHSCAFTP-DGKLLVSGT 846
           +  I FSP+G  +A+    +T KVWD    RC  T+    ++     F P  G  L++G 
Sbjct: 409 IYGINFSPNGYHIATGSGDNTCKVWDLRQRRCVYTIPAHQNLVTGVKFEPIHGNFLLTGA 468

Query: 847 AD 852
            D
Sbjct: 469 YD 470



 Score = 99.0 bits (245), Expect = 7e-21
 Identities = 58/190 (30%), Positives = 92/190 (48%), Gaps = 2/190 (1%)
 Frame = +1

Query: 181 PDGRLFASTSSDCTIRLWDVAKVECLQVLKGHQRSVETVSFSPDSKQLASGGWDKRVMLW 360
           P GR   +T  D + RLWD+   E +   +GH   V  ++F  D     +GG D    +W
Sbjct: 332 PSGRFLGTTCYDRSWRLWDLEAQEEILHQEGHSMGVYDIAFHQDGSLAGTGGLDAFGRVW 391

Query: 361 EVQSGQVLRHLVGHRDSIQSSDFAPSSDCLATGSWDSTIRMWDLRGGTGAIFHQELEGHR 540
           ++++G+ +  L GH   I   +F+P+   +ATGS D+T ++WDLR          +  H+
Sbjct: 392 DLRTGRCIMFLEGHLKEIYGINFSPNGYHIATGSGDNTCKVWDLRQRRCV---YTIPAHQ 448

Query: 541 GNISCLCFSAF--GLLASGSWDKTIHIWKPSTRSLLVQLKGHVTWVKSIAFSPDGLQLAS 714
             ++ + F       L +G++D T  IW     S L  L GH   V  +  S DG  +A+
Sbjct: 449 NLVTGVKFEPIHGNFLLTGAYDNTAKIWTHPGWSPLKTLAGHEGKVMGLDISSDGQLIAT 508

Query: 715 AGYSHTVKVW 744
             Y  T K+W
Sbjct: 509 CSYDRTFKLW 518



 Score = 92.0 bits (227), Expect = 8e-19
 Identities = 61/221 (27%), Positives = 102/221 (46%), Gaps = 2/221 (0%)
 Frame = +1

Query: 199 ASTSSDCTIRLWDVAKVECLQVLKGHQRSVETVSFSPDSKQLASGGWDKRVMLWEVQSGQ 378
           AS ++D +++LW +   E +  ++GH   V  V++ P  + L +  +D+   LW++++ +
Sbjct: 296 ASCAADGSVKLWSLDSDEPVADIEGHTVRVARVTWHPSGRFLGTTCYDRSWRLWDLEAQE 355

Query: 379 VLRHLVGHRDSIQSSDFAPSSDCLATGSWDSTIRMWDLRGGTGAIFHQELEGHRGNISCL 558
            + H  GH   +    F        TG  D+  R+WDLR G   +F   LEGH   I  +
Sbjct: 356 EILHQEGHSMGVYDIAFHQDGSLAGTGGLDAFGRVWDLRTGRCIMF---LEGHLKEIYGI 412

Query: 559 CFSAFGL-LASGSWDKTIHIWKPSTRSLLVQLKGHVTWVKSIAFSP-DGLQLASAGYSHT 732
            FS  G  +A+GS D T  +W    R  +  +  H   V  + F P  G  L +  Y +T
Sbjct: 413 NFSPNGYHIATGSGDNTCKVWDLRQRRCVYTIPAHQNLVTGVKFEPIHGNFLLTGAYDNT 472

Query: 733 VKVWDCNTGRCTDTLKGVLDVAHSCAFTPDGKLLVSGTADQ 855
            K+W         TL G          + DG+L+ + + D+
Sbjct: 473 AKIWTHPGWSPLKTLAGHEGKVMGLDISSDGQLIATCSYDR 513



 Score = 91.3 bits (225), Expect = 1e-18
 Identities = 60/215 (27%), Positives = 99/215 (46%), Gaps = 9/215 (4%)
 Frame = +1

Query: 253 CLQVLKGHQRSVETVSFSPDSKQLASGGWDKRVMLWEVQSGQVLRHLVGHRDSIQSSDFA 432
           C Q+  G  R +    FSP+SK LA+  W     LW V    +L  L GH  ++ +  F 
Sbjct: 224 CSQI--GDDRPISYCHFSPNSKMLATACWSGLCKLWSVPDCNLLHTLRGHNTNVGAIVFH 281

Query: 433 PSSDC--------LATGSWDSTIRMWDLRGGTGAIFHQELEGHRGNISCLCFSAFG-LLA 585
           P S          LA+ + D ++++W L          ++EGH   ++ + +   G  L 
Sbjct: 282 PKSTVSLDQKDVNLASCAADGSVKLWSLDSDEPV---ADIEGHTVRVARVTWHPSGRFLG 338

Query: 586 SGSWDKTIHIWKPSTRSLLVQLKGHVTWVKSIAFSPDGLQLASAGYSHTVKVWDCNTGRC 765
           +  +D++  +W    +  ++  +GH   V  IAF  DG    + G     +VWD  TGRC
Sbjct: 339 TTCYDRSWRLWDLEAQEEILHQEGHSMGVYDIAFHQDGSLAGTGGLDAFGRVWDLRTGRC 398

Query: 766 TDTLKGVLDVAHSCAFTPDGKLLVSGTADQARCQV 870
              L+G L   +   F+P+G  + +G+ D   C+V
Sbjct: 399 IMFLEGHLKEIYGINFSPNGYHIATGSGDNT-CKV 432



 Score = 79.0 bits (193), Expect = 7e-15
 Identities = 42/150 (28%), Positives = 79/150 (52%), Gaps = 2/150 (1%)
 Frame = +1

Query: 175 FSPDGRLFASTSSDCTIRLWDVAKVECLQVLKGHQRSVETVSFSPDSKQLASGGWDKRVM 354
           F  DG L  +   D   R+WD+    C+  L+GH + +  ++FSP+   +A+G  D    
Sbjct: 372 FHQDGSLAGTGGLDAFGRVWDLRTGRCIMFLEGHLKEIYGINFSPNGYHIATGSGDNTCK 431

Query: 355 LWEVQSGQVLRHLVGHRDSIQSSDFAP-SSDCLATGSWDSTIRMWDLRGGTGAIFHQELE 531
           +W+++  + +  +  H++ +    F P   + L TG++D+T ++W   G +     + L 
Sbjct: 432 VWDLRQRRCVYTIPAHQNLVTGVKFEPIHGNFLLTGAYDNTAKIWTHPGWSPL---KTLA 488

Query: 532 GHRGNISCLCFSAFG-LLASGSWDKTIHIW 618
           GH G +  L  S+ G L+A+ S+D+T  +W
Sbjct: 489 GHEGKVMGLDISSDGQLIATCSYDRTFKLW 518


>ref|NP_001014887.1| Notchless gene homolog [Bos taurus]
          Length = 486

 Score =  113 bits (283), Expect = 3e-25
 Identities = 66/180 (36%), Positives = 102/180 (56%), Gaps = 6/180 (3%)
 Frame = +1

Query: 175 FSPDGRLFASTSSDCTIRLWDVAKVECLQVLKGHQRSVETVSFSPDSKQLASGGWDKRVM 354
           FSP G+  AS S D T+R WD++        +GH+  V ++S+SPD K+LASG  + +++
Sbjct: 123 FSPTGKYLASGSGDTTVRFWDLSTETPHFTCQGHRHWVLSISWSPDGKKLASGCKNGQIL 182

Query: 355 LWEVQSG-QVLRHLVGHRDSIQSSDFAP---SSDC--LATGSWDSTIRMWDLRGGTGAIF 516
           LW+  +G QV R L GH   I +  + P   + +C  +A+ S D ++R+WD   G     
Sbjct: 183 LWDPSTGKQVGRALTGHSKWITALSWEPLHANPECRYVASSSKDGSVRVWDTTAGR---C 239

Query: 517 HQELEGHRGNISCLCFSAFGLLASGSWDKTIHIWKPSTRSLLVQLKGHVTWVKSIAFSPD 696
            + L GH  +++CL +   GLL S S D+TI +W+     L   L+GH  WV ++A S D
Sbjct: 240 ERTLTGHAQSVTCLRWGGDGLLYSASQDRTIKVWRAHDGVLCRTLQGHGHWVNTMALSTD 299



 Score =  100 bits (249), Expect = 2e-21
 Identities = 75/269 (27%), Positives = 120/269 (44%), Gaps = 43/269 (15%)
 Frame = +1

Query: 178  SPDGRLFASTSSDCTIRLWDVAKVECLQVLKGHQRSVETVSFSPDSKQLASGGWDKRVML 357
            +P+ R  AS+S D ++R+WD     C + L GH +SV  + +  D   L S   D+ + +
Sbjct: 214  NPECRYVASSSKDGSVRVWDTTAGRCERTLTGHAQSVTCLRWGGDGL-LYSASQDRTIKV 272

Query: 358  WEVQSGQVLRHLVGHRDSIQSSDFAPSSD-CLATGSWD---STIRMWDLRGGTGAIFHQE 525
            W    G + R L GH   + +   A S+D  L TG+++   +++   DLRG    +  + 
Sbjct: 273  WRAHDGVLCRTLQGHGHWVNT--MALSTDYALRTGAFEPAEASVNAQDLRGSLQELKERA 330

Query: 526  LE--------------------------------------GHRGNISCLCFSAFG-LLAS 588
            L                                       GH+  I+ + FS    ++AS
Sbjct: 331  LSRYNLVRGQGPERLVSGSDDFTLFLWSPAEDKKPLARMTGHQALINQVVFSPDSRVIAS 390

Query: 589  GSWDKTIHIWKPSTRSLLVQLKGHVTWVKSIAFSPDGLQLASAGYSHTVKVWDCNTGRCT 768
             S+DK+I +W   T   L  L+GHV  V  IA+S D   L S     T+KVWD    + +
Sbjct: 391  ASFDKSIKLWDGRTGKYLASLRGHVAAVYQIAWSADSRLLVSGSSDSTLKVWDVKAQKLS 450

Query: 769  DTLKGVLDVAHSCAFTPDGKLLVSGTADQ 855
              L G  D  ++  ++PDG+ + SG  D+
Sbjct: 451  TDLPGHADEVYAVDWSPDGQRVASGGKDK 479



 Score = 86.7 bits (213), Expect = 3e-17
 Identities = 66/224 (29%), Positives = 100/224 (44%), Gaps = 6/224 (2%)
 Frame = +1

Query: 241 AKVECLQVLKGHQRSVETVSFSPDSKQLASGGWDKRVMLWEVQSGQVLRHLVGHRDSIQS 420
           A   C   L+GH  +V +V+FSP  K LASG  D  V  W++ +        GHR  + S
Sbjct: 103 AVTRCTSSLEGHSEAVISVAFSPTGKYLASGSGDTTVRFWDLSTETPHFTCQGHRHWVLS 162

Query: 421 SDFAPSSDCLATGSWDSTIRMWDLRGGTGAIFHQELEGHRGNISCLCFSAF------GLL 582
             ++P    LA+G  +  I +WD    TG    + L GH   I+ L +           +
Sbjct: 163 ISWSPDGKKLASGCKNGQILLWD--PSTGKQVGRALTGHSKWITALSWEPLHANPECRYV 220

Query: 583 ASGSWDKTIHIWKPSTRSLLVQLKGHVTWVKSIAFSPDGLQLASAGYSHTVKVWDCNTGR 762
           AS S D ++ +W  +       L GH   V  + +  DGL L SA    T+KVW  + G 
Sbjct: 221 ASSSKDGSVRVWDTTAGRCERTLTGHAQSVTCLRWGGDGL-LYSASQDRTIKVWRAHDGV 279

Query: 763 CTDTLKGVLDVAHSCAFTPDGKLLVSGTADQARCQVHCKSPRAA 894
              TL+G     ++ A + D   L +G  + A   V+ +  R +
Sbjct: 280 LCRTLQGHGHWVNTMALSTD-YALRTGAFEPAEASVNAQDLRGS 322



 Score = 86.3 bits (212), Expect = 4e-17
 Identities = 64/235 (27%), Positives = 101/235 (42%), Gaps = 44/235 (18%)
 Frame = +1

Query: 172 RFSPDGRLFASTSSDCTIRLWDVAKVECLQVLKGHQRSVETVSFSPD------------- 312
           R+  DG L+ S S D TI++W        + L+GH   V T++ S D             
Sbjct: 254 RWGGDGLLY-SASQDRTIKVWRAHDGVLCRTLQGHGHWVNTMALSTDYALRTGAFEPAEA 312

Query: 313 -----------------------------SKQLASGGWDKRVMLWE-VQSGQVLRHLVGH 402
                                         ++L SG  D  + LW   +  + L  + GH
Sbjct: 313 SVNAQDLRGSLQELKERALSRYNLVRGQGPERLVSGSDDFTLFLWSPAEDKKPLARMTGH 372

Query: 403 RDSIQSSDFAPSSDCLATGSWDSTIRMWDLRGGTGAIFHQELEGHRGNISCLCFSAFG-L 579
           +  I    F+P S  +A+ S+D +I++WD R G    +   L GH   +  + +SA   L
Sbjct: 373 QALINQVVFSPDSRVIASASFDKSIKLWDGRTGK---YLASLRGHVAAVYQIAWSADSRL 429

Query: 580 LASGSWDKTIHIWKPSTRSLLVQLKGHVTWVKSIAFSPDGLQLASAGYSHTVKVW 744
           L SGS D T+ +W    + L   L GH   V ++ +SPDG ++AS G    +++W
Sbjct: 430 LVSGSSDSTLKVWDVKAQKLSTDLPGHADEVYAVDWSPDGQRVASGGKDKCLRIW 484



 Score = 83.6 bits (205), Expect = 3e-16
 Identities = 49/142 (34%), Positives = 79/142 (55%), Gaps = 2/142 (1%)
 Frame = +1

Query: 202 STSSDCTIRLWDVAK-VECLQVLKGHQRSVETVSFSPDSKQLASGGWDKRVMLWEVQSGQ 378
           S S D T+ LW  A+  + L  + GHQ  +  V FSPDS+ +AS  +DK + LW+ ++G+
Sbjct: 347 SGSDDFTLFLWSPAEDKKPLARMTGHQALINQVVFSPDSRVIASASFDKSIKLWDGRTGK 406

Query: 379 VLRHLVGHRDSIQSSDFAPSSDCLATGSWDSTIRMWDLRGGTGAIFHQELEGHRGNISCL 558
            L  L GH  ++    ++  S  L +GS DST+++WD++         +L GH   +  +
Sbjct: 407 YLASLRGHVAAVYQIAWSADSRLLVSGSSDSTLKVWDVKAQK---LSTDLPGHADEVYAV 463

Query: 559 CFSAFGL-LASGSWDKTIHIWK 621
            +S  G  +ASG  DK + IW+
Sbjct: 464 DWSPDGQRVASGGKDKCLRIWR 485



 Score = 63.5 bits (153), Expect = 3e-10
 Identities = 47/150 (31%), Positives = 69/150 (46%), Gaps = 2/150 (1%)
 Frame = +1

Query: 526 LEGHRGNISCLCFSAFG-LLASGSWDKTIHIWKPSTRSLLVQLKGHVTWVKSIAFSPDGL 702
           LEGH   +  + FS  G  LASGS D T+  W  ST +     +GH  WV SI++SPDG 
Sbjct: 111 LEGHSEAVISVAFSPTGKYLASGSGDTTVRFWDLSTETPHFTCQGHRHWVLSISWSPDGK 170

Query: 703 QLASAGYSHTVKVWDCNTGRCTDTLKGVLDVAHSCAFTPDGKLLVSGTADQARCQVHCK- 879
           +LAS   +  + +WD +TG+               A T   K + + + +       C+ 
Sbjct: 171 KLASGCKNGQILLWDPSTGKQVGR-----------ALTGHSKWITALSWEPLHANPECRY 219

Query: 880 SPRAAQDNITRMGQIPVGRDCHSPLPGAAQ 969
              +++D   R+     GR C   L G AQ
Sbjct: 220 VASSSKDGSVRVWDTTAGR-CERTLTGHAQ 248


>ref|XP_612428.2| PREDICTED: similar to F-box and WD-40 domain protein 11 isoform 1
           [Bos taurus]
          Length = 563

 Score =  110 bits (274), Expect = 3e-24
 Identities = 68/223 (30%), Positives = 111/223 (49%)
 Frame = +1

Query: 184 DGRLFASTSSDCTIRLWDVAKVECLQVLKGHQRSVETVSFSPDSKQLASGGWDKRVMLWE 363
           D     S   D +I++WD   +ECL+VL GH  SV  + +  D + + +G  D  V +W+
Sbjct: 270 DDEKIISGLRDNSIKIWDKTSLECLKVLTGHTGSVLCLQY--DERVIVTGSSDSTVRVWD 327

Query: 364 VQSGQVLRHLVGHRDSIQSSDFAPSSDCLATGSWDSTIRMWDLRGGTGAIFHQELEGHRG 543
           V +G+VL  L+ H +++    F  S+  + T S D +I +WD+   T     + L GHR 
Sbjct: 328 VNTGEVLNTLIHHNEAVLHLRF--SNGLMVTCSKDRSIAVWDMASATDITLRRVLVGHRA 385

Query: 544 NISCLCFSAFGLLASGSWDKTIHIWKPSTRSLLVQLKGHVTWVKSIAFSPDGLQLASAGY 723
            ++ + F     + S S D+TI +W  ST   +  L GH   +  + +  D L + S   
Sbjct: 386 AVNVVDFDD-KYIVSASGDRTIKVWSTSTCEFVRTLNGHKRGIACLQYR-DRL-VVSGSS 442

Query: 724 SHTVKVWDCNTGRCTDTLKGVLDVAHSCAFTPDGKLLVSGTAD 852
            +T+++WD   G C   L+G  ++     F  D K +VSG  D
Sbjct: 443 DNTIRLWDIECGACLRVLEGHEELVRCIRF--DNKRIVSGAYD 483



 Score = 90.1 bits (222), Expect = 3e-18
 Identities = 62/191 (32%), Positives = 96/191 (50%), Gaps = 3/191 (1%)
 Frame = +1

Query: 184 DGRLFASTSSDCTIRLWDVAKVECLQVLKGHQRSVETVSFSPDSKQLASGGWDKRVMLWE 363
           D R+  + SSD T+R+WDV   E L  L  H  +V  + FS  +  + +   D+ + +W+
Sbjct: 310 DERVIVTGSSDSTVRVWDVNTGEVLNTLIHHNEAVLHLRFS--NGLMVTCSKDRSIAVWD 367

Query: 364 VQSG---QVLRHLVGHRDSIQSSDFAPSSDCLATGSWDSTIRMWDLRGGTGAIFHQELEG 534
           + S     + R LVGHR ++   DF      + + S D TI++W     +   F + L G
Sbjct: 368 MASATDITLRRVLVGHRAAVNVVDF--DDKYIVSASGDRTIKVWST---STCEFVRTLNG 422

Query: 535 HRGNISCLCFSAFGLLASGSWDKTIHIWKPSTRSLLVQLKGHVTWVKSIAFSPDGLQLAS 714
           H+  I+CL +    L+ SGS D TI +W     + L  L+GH   V+ I F  D  ++ S
Sbjct: 423 HKRGIACLQYRD-RLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRF--DNKRIVS 479

Query: 715 AGYSHTVKVWD 747
             Y   +KVWD
Sbjct: 480 GAYDGKIKVWD 490



 Score = 65.5 bits (158), Expect = 8e-11
 Identities = 40/109 (36%), Positives = 58/109 (53%), Gaps = 9/109 (8%)
 Frame = +1

Query: 190 RLFASTSSDCTIRLWDVAKVECLQVLKGHQRSVETVSFSPDSKQLASGGWDKRVMLWEVQ 369
           RL  S SSD TIRLWD+    CL+VL+GH+  V  + F  D+K++ SG +D ++ +W++Q
Sbjct: 435 RLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRF--DNKRIVSGAYDGKIKVWDLQ 492

Query: 370 ---------SGQVLRHLVGHRDSIQSSDFAPSSDCLATGSWDSTIRMWD 489
                    S   LR LV H   +    F      + + S D TI +WD
Sbjct: 493 AALDPRAPASTLCLRTLVEHSGRVFRLQFDEFQ--IISSSHDDTILIWD 539


  Database: RefSeqBP
    Posted date:  Aug 1, 2006  7:14 PM
  Number of letters in database: 16,112,626
  Number of sequences in database:  33,508
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 48,606,495
Number of Sequences: 33508
Number of extensions: 1498596
Number of successful extensions: 9176
Number of sequences better than 1.0e-05: 10
Number of HSP's better than  0.0 without gapping: 4912
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7302
length of database: 16,112,626
effective HSP length: 104
effective length of database: 12,627,794
effective search space used: 3699943642
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

Search to RefSeqSP

BLASTX 2.2.10 [Oct-19-2004]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20060611S-030165
         (1194 letters)

Database: RefSeqSP 
           1040 sequences; 434,620 total letters

Searching...done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_999415.1| platelet-activating factor acetylhydrolase Ib-a...   125   3e-30
Alignment   gi|NP_999497.1| G-beta like protein [Sus scrofa]                     110   9e-26
Alignment   gi|NP_001012296.1| fizzy/cell division cycle 20 related 1 [Sus ...    67   1e-12

>ref|NP_999415.1| platelet-activating factor acetylhydrolase Ib-alpha subunit [Sus
           scrofa]
          Length = 410

 Score =  125 bits (313), Expect = 3e-30
 Identities = 76/248 (30%), Positives = 114/248 (45%), Gaps = 21/248 (8%)
 Frame = +1

Query: 175 FSPDGRLFASTSSDCTIRLWDVAKVECLQVLKGHQRSVETVSFSPDSKQLASGGWDKRVM 354
           F   G+L AS S+D TI+LWD    EC++ + GH  +V +V+  P+   + S   DK + 
Sbjct: 158 FDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVAIMPNGDHIVSAARDKTIK 217

Query: 355 LWEVQSGQVLRHLVGHRDSIQSSDFAPSSDCLATGSWDSTIRMWDLRGGTGAIFHQELEG 534
           +WEVQ+G  ++   GHR+ ++          +A+ S D T+R+W +          EL  
Sbjct: 218 MWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVV---ATKECKAELRE 274

Query: 535 HRGNISCLCFS----------AFG-----------LLASGSWDKTIHIWKPSTRSLLVQL 651
           H   + C+ ++          A G            L SGS DKTI +W  ST   L+ L
Sbjct: 275 HEHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTL 334

Query: 652 KGHVTWVKSIAFSPDGLQLASAGYSHTVKVWDCNTGRCTDTLKGVLDVAHSCAFTPDGKL 831
            GH  WV+ + F   G  + S     T++VWD    RC  TL        S  F      
Sbjct: 335 VGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPY 394

Query: 832 LVSGTADQ 855
           +V+G+ DQ
Sbjct: 395 VVTGSVDQ 402



 Score =  112 bits (279), Expect = 2e-26
 Identities = 74/254 (29%), Positives = 120/254 (47%), Gaps = 21/254 (8%)
 Frame = +1

Query: 157 PVKFCRFSPDGRLFASTSSDCTIRLWDVAKVECLQVLKGHQRSVETVSFSPDSKQLASGG 336
           PV    F P   +  S S D TI++WD    +  + LKGH  SV+ +SF    K LAS  
Sbjct: 110 PVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCS 169

Query: 337 WDKRVMLWEVQSGQVLRHLVGHRDSIQSSDFAPSSDCLATGSWDSTIRMWDLRGGTGAIF 516
            D  + LW+ Q  + +R + GH  ++ S    P+ D + + + D TI+MW+++ G     
Sbjct: 170 ADMTIKLWDFQGFECIRTMHGHDHNVSSVAIMPNGDHIVSAARDKTIKMWEVQTGYCV-- 227

Query: 517 HQELEGHRGNISCLCFSAFG-LLASGSWDKTIHIWKPSTRSLLVQLKGHVTWVKSIAFSP 693
            +   GHR  +  +  +  G L+AS S D+T+ +W  +T+    +L+ H   V+ I+++P
Sbjct: 228 -KTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHEHVVECISWAP 286

Query: 694 D--------------------GLQLASAGYSHTVKVWDCNTGRCTDTLKGVLDVAHSCAF 813
           +                    G  L S     T+K+WD +TG C  TL G  +      F
Sbjct: 287 ESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLF 346

Query: 814 TPDGKLLVSGTADQ 855
              GK ++S   D+
Sbjct: 347 HSGGKFILSCADDK 360



 Score = 96.7 bits (239), Expect = 1e-21
 Identities = 58/187 (31%), Positives = 88/187 (47%), Gaps = 1/187 (0%)
 Frame = +1

Query: 265 LKGHQRSVETVSFSPDSKQLASGGWDKRVMLWEVQSGQVLRHLVGHRDSIQSSDFAPSSD 444
           L GH+  V  V F P    + S   D  + +W+ ++G   R L GH DS+Q   F  S  
Sbjct: 104 LSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGK 163

Query: 445 CLATGSWDSTIRMWDLRGGTGAIFHQELEGHRGNISCLCFSAFG-LLASGSWDKTIHIWK 621
            LA+ S D TI++WD +G       + + GH  N+S +     G  + S + DKTI +W+
Sbjct: 164 LLASCSADMTIKLWDFQGFECI---RTMHGHDHNVSSVAIMPNGDHIVSAARDKTIKMWE 220

Query: 622 PSTRSLLVQLKGHVTWVKSIAFSPDGLQLASAGYSHTVKVWDCNTGRCTDTLKGVLDVAH 801
             T   +    GH  WV+ +  + DG  +AS     TV+VW   T  C   L+    V  
Sbjct: 221 VQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHEHVVE 280

Query: 802 SCAFTPD 822
             ++ P+
Sbjct: 281 CISWAPE 287



 Score = 67.4 bits (163), Expect = 6e-13
 Identities = 34/103 (33%), Positives = 54/103 (52%)
 Frame = +1

Query: 187 GRLFASTSSDCTIRLWDVAKVECLQVLKGHQRSVETVSFSPDSKQLASGGWDKRVMLWEV 366
           G    S S D TI++WDV+   CL  L GH   V  V F    K + S   DK + +W+ 
Sbjct: 308 GPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDY 367

Query: 367 QSGQVLRHLVGHRDSIQSSDFAPSSDCLATGSWDSTIRMWDLR 495
           ++ + ++ L  H   + S DF  ++  + TGS D T+++W+ R
Sbjct: 368 KNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWECR 410



 Score = 48.5 bits (114), Expect = 3e-07
 Identities = 28/68 (41%), Positives = 34/68 (50%)
 Frame = +1

Query: 649 LKGHVTWVKSIAFSPDGLQLASAGYSHTVKVWDCNTGRCTDTLKGVLDVAHSCAFTPDGK 828
           L GH + V  + F P    + SA    T+KVWD  TG    TLKG  D     +F   GK
Sbjct: 104 LSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGK 163

Query: 829 LLVSGTAD 852
           LL S +AD
Sbjct: 164 LLASCSAD 171



 Score = 45.1 bits (105), Expect = 3e-06
 Identities = 18/63 (28%), Positives = 32/63 (50%)
 Frame = +1

Query: 175 FSPDGRLFASTSSDCTIRLWDVAKVECLQVLKGHQRSVETVSFSPDSKQLASGGWDKRVM 354
           F   G+   S + D T+R+WD     C++ L  H+  V ++ F   +  + +G  D+ V 
Sbjct: 346 FHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVK 405

Query: 355 LWE 363
           +WE
Sbjct: 406 VWE 408


>ref|NP_999497.1| G-beta like protein [Sus scrofa]
          Length = 317

 Score =  110 bits (274), Expect = 9e-26
 Identities = 67/226 (29%), Positives = 108/226 (47%), Gaps = 8/226 (3%)
 Frame = +1

Query: 193 LFASTSSDCTIRLWDVAKVEC-----LQVLKGHQRSVETVSFSPDSKQLASGGWDKRVML 357
           +  S S D TI +W + + E       + L+GH   V  V  S D +   SG WD  + L
Sbjct: 30  MILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRL 89

Query: 358 WEVQSGQVLRHLVGHRDSIQSSDFAPSSDCLATGSWDSTIRMWDLRGGTGAIFHQELEGH 537
           W++ +G   R  VGH   + S  F+  +  + +GS D TI++W+  G     +  + E H
Sbjct: 90  WDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLG--VCKYTVQDESH 147

Query: 538 RGNISCLCF---SAFGLLASGSWDKTIHIWKPSTRSLLVQLKGHVTWVKSIAFSPDGLQL 708
              +SC+ F   S+  ++ S  WDK + +W  +   L     GH  ++ ++  SPDG   
Sbjct: 148 SEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLC 207

Query: 709 ASAGYSHTVKVWDCNTGRCTDTLKGVLDVAHSCAFTPDGKLLVSGT 846
           AS G      +WD N G+   TL G  D+ ++  F+P+   L + T
Sbjct: 208 ASGGKDGQAMLWDLNEGKHLYTLDGG-DIINALCFSPNRYWLCAAT 252



 Score = 83.6 bits (205), Expect = 9e-18
 Identities = 73/267 (27%), Positives = 119/267 (44%), Gaps = 15/267 (5%)
 Frame = +1

Query: 178 SPDGRLFASTSSDCTIRLWDVAKVECLQVLKGHQRSVETVSFSPDSKQLASGGWDKRVML 357
           S DG+   S S D T+RLWD+      +   GH + V +V+FS D++Q+ SG  DK + L
Sbjct: 72  SSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKL 131

Query: 358 WEVQSGQVLRHLV---GHRDSIQSSDFAPSSD--CLATGSWDSTIRMWDLRGGTGAIFHQ 522
           W      V ++ V    H + +    F+P+S    + +  WD  +++W+L        H 
Sbjct: 132 WNTLG--VCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNH- 188

Query: 523 ELEGHRGNISCLCFSAFG-LLASGSWDKTIHIWKPSTRSLLVQLKGHVTWVKSIAFSPDG 699
              GH G ++ +  S  G L ASG  D    +W  +    L  L G    + ++ FSP+ 
Sbjct: 189 --IGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGG-DIINALCFSPNR 245

Query: 700 LQLASAGYSHTVKVWDCNTGRCTDTLK-GVLDVAH--------SCAFTPDGKLLVSGTAD 852
             L +A    ++K+WD       D LK  V+  +         S A++ DG+ L +G   
Sbjct: 246 YWLCAA-TGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYT- 303

Query: 853 QARCQVHCKSPRAAQDNITRMGQIPVG 933
                          DN+ R+ Q+ +G
Sbjct: 304 ---------------DNLVRVWQVTIG 315



 Score = 54.7 bits (130), Expect = 4e-09
 Identities = 37/117 (31%), Positives = 58/117 (49%), Gaps = 7/117 (5%)
 Frame = +1

Query: 526 LEGHRGNISCLCFSAF--GLLASGSWDKTIHIWK---PSTRSLLVQ--LKGHVTWVKSIA 684
           L+GH G ++ +  +     ++ S S DKTI +WK     T   + Q  L+GH  +V  + 
Sbjct: 11  LKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVV 70

Query: 685 FSPDGLQLASAGYSHTVKVWDCNTGRCTDTLKGVLDVAHSCAFTPDGKLLVSGTADQ 855
            S DG    S  +  T+++WD  TG  T    G      S AF+ D + +VSG+ D+
Sbjct: 71  ISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDK 127


>ref|NP_001012296.1| fizzy/cell division cycle 20 related 1 [Sus scrofa]
          Length = 493

 Score = 66.6 bits (161), Expect = 1e-12
 Identities = 65/243 (26%), Positives = 113/243 (46%), Gaps = 8/243 (3%)
 Frame = +1

Query: 151 GGPVKFCRFSPDGRLFASTSSDCTIRLWDVAKVECLQVLKGHQRSVETVSFSPDSKQLAS 330
           G  V    +S  G L A  +    +++WD A  + L +L+GH   V  ++++ D  QL+S
Sbjct: 229 GDSVTSVGWSERGNLVAVGTHKGFVQIWDAAAGKKLSMLEGHTARVGALAWNAD--QLSS 286

Query: 331 GGWDKRVMLWEVQSG--QVLRHLVGHRDSIQSSDFAPSSDCLATGSWDSTIRMWDLRGGT 504
           G  D+ ++  ++++   Q  R L GHR  +    ++     LA+G  D+ + +W+    +
Sbjct: 287 GSRDRMILQRDIRTPPLQSERRLQGHRQEVCGLKWSTDHQLLASGGNDNKLLVWNHSSLS 346

Query: 505 GAIFHQELEGHRGNISCLCFS--AFGLLAS--GSWDKTIHIWKPSTRSLLVQLKGHVTWV 672
                Q+   H   +  + +S    GLLAS  G+ D+ I  W   T   L Q     + V
Sbjct: 347 PV---QQYTEHLAAVKAIAWSPHQHGLLASGGGTADRCIRFWNTLTGQPL-QCIDTGSQV 402

Query: 673 KSIAFSPDGLQLASA-GYS-HTVKVWDCNTGRCTDTLKGVLDVAHSCAFTPDGKLLVSGT 846
            ++A+S    +L S  GYS + + VW   +      L G        A +PDG+ +V+G 
Sbjct: 403 CNLAWSKHANELVSTHGYSQNQILVWKYPSLTQVAKLTGHSYRVLYLAMSPDGEAIVTGA 462

Query: 847 ADQ 855
            D+
Sbjct: 463 GDE 465



 Score = 54.7 bits (130), Expect = 4e-09
 Identities = 44/169 (26%), Positives = 79/169 (46%), Gaps = 8/169 (4%)
 Frame = +1

Query: 265 LKGHQRSVETVSFSPDSKQLASGGWDKRVMLWEVQSGQVLRHLVGHRDSIQSSDFAPSSD 444
           L+GH++ V  + +S D + LASGG D ++++W   S   ++    H  ++++  ++P   
Sbjct: 309 LQGHRQEVCGLKWSTDHQLLASGGNDNKLLVWNHSSLSPVQQYTEHLAAVKAIAWSPHQH 368

Query: 445 CLAT---GSWDSTIRMWDLRGGTGAIFHQELEG-HRGNISC-LCFSAFG---LLASGSWD 600
            L     G+ D  IR W+   G      Q L+    G+  C L +S      +   G   
Sbjct: 369 GLLASGGGTADRCIRFWNTLTG------QPLQCIDTGSQVCNLAWSKHANELVSTHGYSQ 422

Query: 601 KTIHIWKPSTRSLLVQLKGHVTWVKSIAFSPDGLQLASAGYSHTVKVWD 747
             I +WK  + + + +L GH   V  +A SPDG  + +     T++ W+
Sbjct: 423 NQILVWKYPSLTQVAKLTGHSYRVLYLAMSPDGEAIVTGAGDETLRFWN 471


  Database: RefSeqSP
    Posted date:  Aug 1, 2006  7:14 PM
  Number of letters in database: 434,620
  Number of sequences in database:  1040
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,283,208
Number of Sequences: 1040
Number of extensions: 37688
Number of successful extensions: 166
Number of sequences better than 1.0e-05: 3
Number of HSP's better than  0.0 without gapping: 107
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 135
length of database: 434,620
effective HSP length: 79
effective length of database: 352,460
effective search space used: 112082280
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

Search to RefSeqHP

BLASTX 2.2.10 [Oct-19-2004]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20060611S-030165
         (1194 letters)

Database: RefSeqHP 
           39,411 sequences; 17,774,539 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|XP_947007.1| PREDICTED: similar to CG7704-PA isoform 1 [Homo...   418   e-121
Alignment   gi|XP_934992.1| PREDICTED: similar to CG7704-PA isoform 1 [Homo...   414   e-120
Alignment   gi|XP_950627.1| PREDICTED: similar to WD repeat domain 51A isof...   278   7e-75
Alignment   gi|XP_939160.1| PREDICTED: similar to WD repeat domain 51A isof...   274   1e-73
Alignment   gi|NP_849143.1| hypothetical protein LOC164781 [Homo sapiens]        145   7e-35
Alignment   gi|NP_005877.2| katanin p80 subunit B 1 [Homo sapiens]               138   1e-32
Alignment   gi|NP_008882.2| TBP-associated factor 5 [Homo sapiens]               134   2e-31
Alignment   gi|NP_055224.1| PCAF associated factor 65 beta isoform a [Homo ...   125   5e-29
Alignment   gi|NP_061942.2| WD repeat domain 5B [Homo sapiens]                   125   7e-29
Alignment   gi|NP_000421.1| platelet-activating factor acetylhydrolase, iso...   125   9e-29

>ref|XP_947007.1| PREDICTED: similar to CG7704-PA isoform 1 [Homo sapiens]
          Length = 315

 Score =  418 bits (1075), Expect(2) = e-121
 Identities = 201/251 (80%), Positives = 222/251 (88%), Gaps = 3/251 (1%)
 Frame = +1

Query: 154 GPVKFCRFSPDGRLFASTSSDCTIRLWDVAKVECLQVLKGHQRSVETVSFSPDSKQLASG 333
           GPVKFCRFSPDG LFAS S DCT+RLWDVA+ +CL+VLKGHQRSVETVSFSPDS+QLASG
Sbjct: 64  GPVKFCRFSPDGHLFASASCDCTVRLWDVARAKCLRVLKGHQRSVETVSFSPDSRQLASG 123

Query: 334 GWDKRVMLWEVQSGQVLRHLVGHRDSIQSSDFAPSSDCLATGSWDSTIRMWDLRGGTGAI 513
           GWDKRVMLW+VQSGQ+LR LVGHRDSIQSSDF+P+ +CLATGSWDST+R+WDLR  T A+
Sbjct: 124 GWDKRVMLWDVQSGQMLRLLVGHRDSIQSSDFSPTVNCLATGSWDSTVRIWDLRMVTPAV 183

Query: 514 FHQELEGHRGNISCLCFSAFGLLASGSWDKTIHIWKPSTRSLLVQLKGHVTWVKSIAFSP 693
            HQ LEGH GNISCLC+SA GLLASGSWDKTIHIWKP+T SLL+QLKGHVTWVKSIAFSP
Sbjct: 184 SHQALEGHSGNISCLCYSASGLLASGSWDKTIHIWKPTTSSLLIQLKGHVTWVKSIAFSP 243

Query: 694 DGLQLASAGYSHTVKVWDCNTGRCTDTLK-GVLDVAHSCAFTPDGKLLVSGTADQARCQV 870
           D L LASAGYS  VKVWDCNTG+C +TLK GVLDVAH+CAFTPDGK+LVSG ADQ R Q+
Sbjct: 244 DELWLASAGYSRMVKVWDCNTGKCLETLKQGVLDVAHTCAFTPDGKILVSGAADQTRRQI 303

Query: 871 H--CKSPRAAQ 897
               KSPR  Q
Sbjct: 304 SRTSKSPRDPQ 314



 Score = 98.6 bits (244), Expect = 9e-21
 Identities = 56/159 (35%), Positives = 85/159 (53%), Gaps = 1/159 (0%)
 Frame = +1

Query: 274 HQRSVETVSFSPDSKQLASGGWDKRVMLWEVQSGQVLRHLVGHRDSIQSSDFAPSSDCLA 453
           H   V + +FSPD + L +G  D  V  WE +SGQ+L  L GH   ++   F+P     A
Sbjct: 20  HGGEVNSSAFSPDGQMLLTGSEDGCVYGWETRSGQLLWRLGGHTGPVKFCRFSPDGHLFA 79

Query: 454 TGSWDSTIRMWDLRGGTGAIFHQELEGHRGNISCLCFSAFG-LLASGSWDKTIHIWKPST 630
           + S D T+R+WD+     A   + L+GH+ ++  + FS     LASG WDK + +W   +
Sbjct: 80  SASCDCTVRLWDV---ARAKCLRVLKGHQRSVETVSFSPDSRQLASGGWDKRVMLWDVQS 136

Query: 631 RSLLVQLKGHVTWVKSIAFSPDGLQLASAGYSHTVKVWD 747
             +L  L GH   ++S  FSP    LA+  +  TV++WD
Sbjct: 137 GQMLRLLVGHRDSIQSSDFSPTVNCLATGSWDSTVRIWD 175



 Score = 68.9 bits (167), Expect = 8e-12
 Identities = 40/108 (37%), Positives = 57/108 (52%), Gaps = 1/108 (0%)
 Frame = +1

Query: 535 HRGNISCLCFSAFG-LLASGSWDKTIHIWKPSTRSLLVQLKGHVTWVKSIAFSPDGLQLA 711
           H G ++   FS  G +L +GS D  ++ W+  +  LL +L GH   VK   FSPDG   A
Sbjct: 20  HGGEVNSSAFSPDGQMLLTGSEDGCVYGWETRSGQLLWRLGGHTGPVKFCRFSPDGHLFA 79

Query: 712 SAGYSHTVKVWDCNTGRCTDTLKGVLDVAHSCAFTPDGKLLVSGTADQ 855
           SA    TV++WD    +C   LKG      + +F+PD + L SG  D+
Sbjct: 80  SASCDCTVRLWDVARAKCLRVLKGHQRSVETVSFSPDSRQLASGGWDK 127



 Score = 35.8 bits (81), Expect(2) = e-121
 Identities = 16/23 (69%), Positives = 18/23 (78%)
 Frame = +2

Query: 86  MNSGAPGTLAVGRVKFYCRHRGE 154
           MNSG P TLAV RVKF+ +H GE
Sbjct: 1   MNSGVPATLAVRRVKFFGQHGGE 23


>ref|XP_934992.1| PREDICTED: similar to CG7704-PA isoform 1 [Homo sapiens]
          Length = 315

 Score =  414 bits (1064), Expect(2) = e-120
 Identities = 199/251 (79%), Positives = 220/251 (87%), Gaps = 3/251 (1%)
 Frame = +1

Query: 154 GPVKFCRFSPDGRLFASTSSDCTIRLWDVAKVECLQVLKGHQRSVETVSFSPDSKQLASG 333
           GPVKFCRFSPDG LFAS S DCT+RLWDVA+ +CL+VLKGHQRSVETVSFSPDS+QLASG
Sbjct: 64  GPVKFCRFSPDGHLFASASCDCTVRLWDVARAKCLRVLKGHQRSVETVSFSPDSRQLASG 123

Query: 334 GWDKRVMLWEVQSGQVLRHLVGHRDSIQSSDFAPSSDCLATGSWDSTIRMWDLRGGTGAI 513
           GWDKRVMLW+VQSGQ+LR LVGHRDSIQSSDF+P+ +CLATGSWDST+ +WDLR  T A+
Sbjct: 124 GWDKRVMLWDVQSGQMLRLLVGHRDSIQSSDFSPTVNCLATGSWDSTVHIWDLRMVTPAV 183

Query: 514 FHQELEGHRGNISCLCFSAFGLLASGSWDKTIHIWKPSTRSLLVQLKGHVTWVKSIAFSP 693
            HQ LEGH  NISCLC+SA GLLASGSWDKTIHIWKP+T SLL+QLKGHVTWVKSIAFSP
Sbjct: 184 SHQALEGHSANISCLCYSASGLLASGSWDKTIHIWKPTTSSLLIQLKGHVTWVKSIAFSP 243

Query: 694 DGLQLASAGYSHTVKVWDCNTGRCTDTLK-GVLDVAHSCAFTPDGKLLVSGTADQARCQV 870
           D L LASAGYS  VKVWDCNTG+C +TLK GVLDVAH+CAFTPDGK+LVSG ADQ R Q+
Sbjct: 244 DELWLASAGYSRMVKVWDCNTGKCLETLKQGVLDVAHTCAFTPDGKILVSGAADQTRRQI 303

Query: 871 H--CKSPRAAQ 897
               KSPR  Q
Sbjct: 304 SRTSKSPRDPQ 314



 Score = 97.4 bits (241), Expect = 2e-20
 Identities = 56/159 (35%), Positives = 84/159 (52%), Gaps = 1/159 (0%)
 Frame = +1

Query: 274 HQRSVETVSFSPDSKQLASGGWDKRVMLWEVQSGQVLRHLVGHRDSIQSSDFAPSSDCLA 453
           H   V + +FSPD + L +G  D  V  WE +SGQ+L  L GH   ++   F+P     A
Sbjct: 20  HGGEVNSSAFSPDGQMLLTGSEDGCVYGWETRSGQLLWRLGGHTGPVKFCRFSPDGHLFA 79

Query: 454 TGSWDSTIRMWDLRGGTGAIFHQELEGHRGNISCLCFSAFG-LLASGSWDKTIHIWKPST 630
           + S D T+R+WD+     A   + L+GH+ ++  + FS     LASG WDK + +W   +
Sbjct: 80  SASCDCTVRLWDV---ARAKCLRVLKGHQRSVETVSFSPDSRQLASGGWDKRVMLWDVQS 136

Query: 631 RSLLVQLKGHVTWVKSIAFSPDGLQLASAGYSHTVKVWD 747
             +L  L GH   ++S  FSP    LA+  +  TV +WD
Sbjct: 137 GQMLRLLVGHRDSIQSSDFSPTVNCLATGSWDSTVHIWD 175



 Score = 68.9 bits (167), Expect = 8e-12
 Identities = 40/108 (37%), Positives = 57/108 (52%), Gaps = 1/108 (0%)
 Frame = +1

Query: 535 HRGNISCLCFSAFG-LLASGSWDKTIHIWKPSTRSLLVQLKGHVTWVKSIAFSPDGLQLA 711
           H G ++   FS  G +L +GS D  ++ W+  +  LL +L GH   VK   FSPDG   A
Sbjct: 20  HGGEVNSSAFSPDGQMLLTGSEDGCVYGWETRSGQLLWRLGGHTGPVKFCRFSPDGHLFA 79

Query: 712 SAGYSHTVKVWDCNTGRCTDTLKGVLDVAHSCAFTPDGKLLVSGTADQ 855
           SA    TV++WD    +C   LKG      + +F+PD + L SG  D+
Sbjct: 80  SASCDCTVRLWDVARAKCLRVLKGHQRSVETVSFSPDSRQLASGGWDK 127



 Score = 35.8 bits (81), Expect(2) = e-120
 Identities = 16/23 (69%), Positives = 18/23 (78%)
 Frame = +2

Query: 86  MNSGAPGTLAVGRVKFYCRHRGE 154
           MNSG P TLAV RVKF+ +H GE
Sbjct: 1   MNSGVPATLAVRRVKFFGQHGGE 23


>ref|XP_950627.1| PREDICTED: similar to WD repeat domain 51A isoform 2 [Homo sapiens]
          Length = 177

 Score =  278 bits (711), Expect = 7e-75
 Identities = 136/176 (77%), Positives = 151/176 (85%), Gaps = 3/176 (1%)
 Frame = +1

Query: 379 VLRHLVGHRDSIQSSDFAPSSDCLATGSWDSTIRMWDLRGGTGAIFHQELEGHRGNISCL 558
           +LR LVGHRDSIQSSDF+P+ +CLATGSWDST+R+WDLR  T A+ HQ LEGH GNISCL
Sbjct: 1   MLRLLVGHRDSIQSSDFSPTVNCLATGSWDSTVRIWDLRMVTPAVSHQALEGHSGNISCL 60

Query: 559 CFSAFGLLASGSWDKTIHIWKPSTRSLLVQLKGHVTWVKSIAFSPDGLQLASAGYSHTVK 738
           C+SA GLLASGSWDKTIHIWKP+T SLL+QLKGHVTWVKSIAFSPD L LASAGYS  VK
Sbjct: 61  CYSASGLLASGSWDKTIHIWKPTTSSLLIQLKGHVTWVKSIAFSPDELWLASAGYSRMVK 120

Query: 739 VWDCNTGRCTDTLK-GVLDVAHSCAFTPDGKLLVSGTADQARCQVH--CKSPRAAQ 897
           VWDCNTG+C +TLK GVLDVAH+CAFTPDGK+LVSG ADQ R Q+    KSPR  Q
Sbjct: 121 VWDCNTGKCLETLKQGVLDVAHTCAFTPDGKILVSGAADQTRRQISRTSKSPRDPQ 176



 Score = 78.2 bits (191), Expect = 1e-14
 Identities = 55/164 (33%), Positives = 87/164 (53%), Gaps = 5/164 (3%)
 Frame = +1

Query: 256 LQVLKGHQRSVETVSFSPDSKQLASGGWDKRVMLWEVQS-GQVLRH--LVGHRDSIQSSD 426
           L++L GH+ S+++  FSP    LA+G WD  V +W+++     + H  L GH  +I    
Sbjct: 2   LRLLVGHRDSIQSSDFSPTVNCLATGSWDSTVRIWDLRMVTPAVSHQALEGHSGNISCLC 61

Query: 427 FAPSSDCLATGSWDSTIRMWDLRGGTGAIFHQELEGHRGNISCLCFSAFGL-LASGSWDK 603
           ++ +S  LA+GSWD TI +W  +  T ++  Q L+GH   +  + FS   L LAS  + +
Sbjct: 62  YS-ASGLLASGSWDKTIHIW--KPTTSSLLIQ-LKGHVTWVKSIAFSPDELWLASAGYSR 117

Query: 604 TIHIWKPSTRSLLVQLK-GHVTWVKSIAFSPDGLQLASAGYSHT 732
            + +W  +T   L  LK G +    + AF+PDG  L S     T
Sbjct: 118 MVKVWDCNTGKCLETLKQGVLDVAHTCAFTPDGKILVSGAADQT 161



 Score = 70.1 bits (170), Expect = 4e-12
 Identities = 46/148 (31%), Positives = 73/148 (49%), Gaps = 4/148 (2%)
 Frame = +1

Query: 175 FSPDGRLFASTSSDCTIRLWDVAKVECL---QVLKGHQRSVETVSFSPDSKQLASGGWDK 345
           FSP     A+ S D T+R+WD+  V      Q L+GH  ++  + +S  S  LASG WDK
Sbjct: 17  FSPTVNCLATGSWDSTVRIWDLRMVTPAVSHQALEGHSGNISCLCYSA-SGLLASGSWDK 75

Query: 346 RVMLWEVQSGQVLRHLVGHRDSIQSSDFAPSSDCLATGSWDSTIRMWDLRGGTGAIFHQE 525
            + +W+  +  +L  L GH   ++S  F+P    LA+  +   +++WD    TG      
Sbjct: 76  TIHIWKPTTSSLLIQLKGHVTWVKSIAFSPDELWLASAGYSRMVKVWDC--NTGKCLETL 133

Query: 526 LEGHRGNISCLCFSAFG-LLASGSWDKT 606
            +G         F+  G +L SG+ D+T
Sbjct: 134 KQGVLDVAHTCAFTPDGKILVSGAADQT 161



 Score = 60.8 bits (146), Expect = 2e-09
 Identities = 39/110 (35%), Positives = 55/110 (50%), Gaps = 1/110 (0%)
 Frame = +1

Query: 154 GPVKFCRFSPDGRLFASTSSDCTIRLWDVAKVECLQVLKGHQRSVETVSFSPDSKQLASG 333
           G +    +S  G L AS S D TI +W       L  LKGH   V++++FSPD   LAS 
Sbjct: 55  GNISCLCYSASG-LLASGSWDKTIHIWKPTTSSLLIQLKGHVTWVKSIAFSPDELWLASA 113

Query: 334 GWDKRVMLWEVQSGQVLRHL-VGHRDSIQSSDFAPSSDCLATGSWDSTIR 480
           G+ + V +W+  +G+ L  L  G  D   +  F P    L +G+ D T R
Sbjct: 114 GYSRMVKVWDCNTGKCLETLKQGVLDVAHTCAFTPDGKILVSGAADQTRR 163


>ref|XP_939160.1| PREDICTED: similar to WD repeat domain 51A isoform 2 [Homo sapiens]
          Length = 177

 Score =  274 bits (700), Expect = 1e-73
 Identities = 134/176 (76%), Positives = 149/176 (84%), Gaps = 3/176 (1%)
 Frame = +1

Query: 379 VLRHLVGHRDSIQSSDFAPSSDCLATGSWDSTIRMWDLRGGTGAIFHQELEGHRGNISCL 558
           +LR LVGHRDSIQSSDF+P+ +CLATGSWDST+ +WDLR  T A+ HQ LEGH  NISCL
Sbjct: 1   MLRLLVGHRDSIQSSDFSPTVNCLATGSWDSTVHIWDLRMVTPAVSHQALEGHSANISCL 60

Query: 559 CFSAFGLLASGSWDKTIHIWKPSTRSLLVQLKGHVTWVKSIAFSPDGLQLASAGYSHTVK 738
           C+SA GLLASGSWDKTIHIWKP+T SLL+QLKGHVTWVKSIAFSPD L LASAGYS  VK
Sbjct: 61  CYSASGLLASGSWDKTIHIWKPTTSSLLIQLKGHVTWVKSIAFSPDELWLASAGYSRMVK 120

Query: 739 VWDCNTGRCTDTLK-GVLDVAHSCAFTPDGKLLVSGTADQARCQVH--CKSPRAAQ 897
           VWDCNTG+C +TLK GVLDVAH+CAFTPDGK+LVSG ADQ R Q+    KSPR  Q
Sbjct: 121 VWDCNTGKCLETLKQGVLDVAHTCAFTPDGKILVSGAADQTRRQISRTSKSPRDPQ 176



 Score = 77.4 bits (189), Expect = 2e-14
 Identities = 55/164 (33%), Positives = 87/164 (53%), Gaps = 5/164 (3%)
 Frame = +1

Query: 256 LQVLKGHQRSVETVSFSPDSKQLASGGWDKRVMLWEVQS-GQVLRH--LVGHRDSIQSSD 426
           L++L GH+ S+++  FSP    LA+G WD  V +W+++     + H  L GH  +I    
Sbjct: 2   LRLLVGHRDSIQSSDFSPTVNCLATGSWDSTVHIWDLRMVTPAVSHQALEGHSANISCLC 61

Query: 427 FAPSSDCLATGSWDSTIRMWDLRGGTGAIFHQELEGHRGNISCLCFSAFGL-LASGSWDK 603
           ++ +S  LA+GSWD TI +W  +  T ++  Q L+GH   +  + FS   L LAS  + +
Sbjct: 62  YS-ASGLLASGSWDKTIHIW--KPTTSSLLIQ-LKGHVTWVKSIAFSPDELWLASAGYSR 117

Query: 604 TIHIWKPSTRSLLVQLK-GHVTWVKSIAFSPDGLQLASAGYSHT 732
            + +W  +T   L  LK G +    + AF+PDG  L S     T
Sbjct: 118 MVKVWDCNTGKCLETLKQGVLDVAHTCAFTPDGKILVSGAADQT 161



 Score = 68.6 bits (166), Expect = 1e-11
 Identities = 45/148 (30%), Positives = 72/148 (48%), Gaps = 4/148 (2%)
 Frame = +1

Query: 175 FSPDGRLFASTSSDCTIRLWDVAKVECL---QVLKGHQRSVETVSFSPDSKQLASGGWDK 345
           FSP     A+ S D T+ +WD+  V      Q L+GH  ++  + +S  S  LASG WDK
Sbjct: 17  FSPTVNCLATGSWDSTVHIWDLRMVTPAVSHQALEGHSANISCLCYSA-SGLLASGSWDK 75

Query: 346 RVMLWEVQSGQVLRHLVGHRDSIQSSDFAPSSDCLATGSWDSTIRMWDLRGGTGAIFHQE 525
            + +W+  +  +L  L GH   ++S  F+P    LA+  +   +++WD    TG      
Sbjct: 76  TIHIWKPTTSSLLIQLKGHVTWVKSIAFSPDELWLASAGYSRMVKVWDC--NTGKCLETL 133

Query: 526 LEGHRGNISCLCFSAFG-LLASGSWDKT 606
            +G         F+  G +L SG+ D+T
Sbjct: 134 KQGVLDVAHTCAFTPDGKILVSGAADQT 161



 Score = 60.5 bits (145), Expect = 3e-09
 Identities = 36/97 (37%), Positives = 50/97 (51%), Gaps = 1/97 (1%)
 Frame = +1

Query: 193 LFASTSSDCTIRLWDVAKVECLQVLKGHQRSVETVSFSPDSKQLASGGWDKRVMLWEVQS 372
           L AS S D TI +W       L  LKGH   V++++FSPD   LAS G+ + V +W+  +
Sbjct: 67  LLASGSWDKTIHIWKPTTSSLLIQLKGHVTWVKSIAFSPDELWLASAGYSRMVKVWDCNT 126

Query: 373 GQVLRHL-VGHRDSIQSSDFAPSSDCLATGSWDSTIR 480
           G+ L  L  G  D   +  F P    L +G+ D T R
Sbjct: 127 GKCLETLKQGVLDVAHTCAFTPDGKILVSGAADQTRR 163


>ref|NP_849143.1| hypothetical protein LOC164781 [Homo sapiens]
          Length = 415

 Score =  145 bits (366), Expect = 7e-35
 Identities = 75/233 (32%), Positives = 122/233 (52%), Gaps = 1/233 (0%)
 Frame = +1

Query: 175 FSPDGRLFASTSSDCTIRLWDVAKVECLQVLKGHQRSVETVSFSPDSKQLASGGWDKRVM 354
           F+P   L A+ S D T +LWD+   E +  L+GH   + ++SF+    ++ +G +D  V+
Sbjct: 185 FNPQSTLVATGSMDTTAKLWDIQNGEEVYTLRGHSAEIISLSFNTSGDRIITGSFDHTVV 244

Query: 355 LWEVQSGQVLRHLVGHRDSIQSSDFAPSSDCLATGSWDSTIRMWDLRGGTGAIFHQELEG 534
           +W+  +G+ +  L+GH   I S+ F      + TGS D T ++WD   G        L G
Sbjct: 245 VWDADTGRKVNILIGHCAEISSASFNWDCSLILTGSMDKTCKLWDATNGKCVA---TLTG 301

Query: 535 HRGNISCLCFSAFG-LLASGSWDKTIHIWKPSTRSLLVQLKGHVTWVKSIAFSPDGLQLA 711
           H   I   CF   G L+A+ S D T  I+  +TR  + +L+GH   +  I+F+P G  L 
Sbjct: 302 HDDEILDSCFDYTGKLIATASADGTARIFSAATRKCIAKLEGHEGEISKISFNPQGNHLL 361

Query: 712 SAGYSHTVKVWDCNTGRCTDTLKGVLDVAHSCAFTPDGKLLVSGTADQARCQV 870
           +     T ++WD  TG+C   L+G  D   SCAF   G ++++G+ D   C++
Sbjct: 362 TGSSDKTARIWDAQTGQCLQVLEGHTDEIFSCAFNYKGNIVITGSKDNT-CRI 413



 Score =  129 bits (325), Expect = 4e-30
 Identities = 76/234 (32%), Positives = 115/234 (49%), Gaps = 2/234 (0%)
 Frame = +1

Query: 157 PVKFCRFSPDGRLFASTSSDCTIRLWDVAKVECLQVLKGHQRSVETVSF-SPDSKQLASG 333
           P+     +  G  F + S D T +LWD A  E L  L+GH+  V  ++F +P   ++A+G
Sbjct: 94  PLTNVALNKSGSCFITGSYDRTCKLWDTASGEELNTLEGHRNVVYAIAFNNPYGDKIATG 153

Query: 334 GWDKRVMLWEVQSGQVLRHLVGHRDSIQSSDFAPSSDCLATGSWDSTIRMWDLRGGTGAI 513
            +DK   LW V++G+      GH   I    F P S  +ATGS D+T ++WD++ G    
Sbjct: 154 SFDKTCKLWSVETGKCYHTFRGHTAEIVCLSFNPQSTLVATGSMDTTAKLWDIQNGEEV- 212

Query: 514 FHQELEGHRGNISCLCFSAFG-LLASGSWDKTIHIWKPSTRSLLVQLKGHVTWVKSIAFS 690
               L GH   I  L F+  G  + +GS+D T+ +W   T   +  L GH   + S +F+
Sbjct: 213 --YTLRGHSAEIISLSFNTSGDRIITGSFDHTVVVWDADTGRKVNILIGHCAEISSASFN 270

Query: 691 PDGLQLASAGYSHTVKVWDCNTGRCTDTLKGVLDVAHSCAFTPDGKLLVSGTAD 852
            D   + +     T K+WD   G+C  TL G  D      F   GKL+ + +AD
Sbjct: 271 WDCSLILTGSMDKTCKLWDATNGKCVATLTGHDDEILDSCFDYTGKLIATASAD 324



 Score =  113 bits (282), Expect = 4e-25
 Identities = 65/201 (32%), Positives = 105/201 (52%), Gaps = 2/201 (0%)
 Frame = +1

Query: 259 QVLKGHQRSVETVSFSPDSKQLASGGWDKRVMLWEVQSGQVLRHLVGHRDSIQSSDF-AP 435
           +VLK H   +  V+ +       +G +D+   LW+  SG+ L  L GHR+ + +  F  P
Sbjct: 86  KVLKAHILPLTNVALNKSGSCFITGSYDRTCKLWDTASGEELNTLEGHRNVVYAIAFNNP 145

Query: 436 SSDCLATGSWDSTIRMWDLRGGTGAIFHQELEGHRGNISCLCFSAFG-LLASGSWDKTIH 612
             D +ATGS+D T ++W +   TG  +H    GH   I CL F+    L+A+GS D T  
Sbjct: 146 YGDKIATGSFDKTCKLWSVE--TGKCYH-TFRGHTAEIVCLSFNPQSTLVATGSMDTTAK 202

Query: 613 IWKPSTRSLLVQLKGHVTWVKSIAFSPDGLQLASAGYSHTVKVWDCNTGRCTDTLKGVLD 792
           +W       +  L+GH   + S++F+  G ++ +  + HTV VWD +TGR  + L G   
Sbjct: 203 LWDIQNGEEVYTLRGHSAEIISLSFNTSGDRIITGSFDHTVVVWDADTGRKVNILIGHCA 262

Query: 793 VAHSCAFTPDGKLLVSGTADQ 855
              S +F  D  L+++G+ D+
Sbjct: 263 EISSASFNWDCSLILTGSMDK 283



 Score = 82.8 bits (203), Expect = 5e-16
 Identities = 39/104 (37%), Positives = 60/104 (57%)
 Frame = +1

Query: 175 FSPDGRLFASTSSDCTIRLWDVAKVECLQVLKGHQRSVETVSFSPDSKQLASGGWDKRVM 354
           F   G+L A+ S+D T R++  A  +C+  L+GH+  +  +SF+P    L +G  DK   
Sbjct: 311 FDYTGKLIATASADGTARIFSAATRKCIAKLEGHEGEISKISFNPQGNHLLTGSSDKTAR 370

Query: 355 LWEVQSGQVLRHLVGHRDSIQSSDFAPSSDCLATGSWDSTIRMW 486
           +W+ Q+GQ L+ L GH D I S  F    + + TGS D+T R+W
Sbjct: 371 IWDAQTGQCLQVLEGHTDEIFSCAFNYKGNIVITGSKDNTCRIW 414


>ref|NP_005877.2| katanin p80 subunit B 1 [Homo sapiens]
          Length = 655

 Score =  138 bits (347), Expect = 1e-32
 Identities = 81/262 (30%), Positives = 129/262 (49%), Gaps = 2/262 (0%)
 Frame = +1

Query: 187 GRLFASTSSDCTIRLWDVAKVECLQVLKGHQRSVETVSFSPDSKQLASGGWDKRVMLWEV 366
           GRL A+   DC + LW + K  C+  L GH   VE+V  +   + + +G     + +W++
Sbjct: 33  GRLLATGGDDCRVNLWSINKPNCIMSLTGHTSPVESVRLNTPEELIVAGSQSGSIRVWDL 92

Query: 367 QSGQVLRHLVGHRDSIQSSDFAPSSDCLATGSWDSTIRMWDLRGGTGAIFHQELEGHRGN 546
           ++ ++LR L+GH+ +I S DF P  + +A+GS D+ I++WD+R   G +F     GH   
Sbjct: 93  EAAKILRTLMGHKANICSLDFHPYGEFVASGSQDTNIKLWDIR-RKGCVF--RYRGHSQA 149

Query: 547 ISCLCFSAFG-LLASGSWDKTIHIWKPSTRSLLVQLKGHVTWVKSIAFSPDGLQLASAGY 723
           + CL FS  G  LAS + D T+ +W  +   ++ +  GH   V  + F P+   LAS   
Sbjct: 150 VRCLRFSPDGKWLASAADDHTVKLWDLTAGKMMSEFPGHTGPVNVVEFHPNEYLLASGSS 209

Query: 724 SHTVKVWDCNTGRCTDTLKGVLDVAHSCAFTPDGKLLVSGTADQARCQVHCKSPRAAQDN 903
             T++ WD    +    ++G      S  F PDG  L SG  D  R  V+   P    D 
Sbjct: 210 DRTIRFWDLEKFQVVSCIEGEPGPVRSVLFNPDGCCLYSGCQDSLR--VYGWEPERCFDV 267

Query: 904 I-TRMGQIPVGRDCHSPLPGAA 966
           +    G++     C+  L G A
Sbjct: 268 VLVNWGKVADLAICNDQLIGVA 289



 Score =  105 bits (261), Expect = 1e-22
 Identities = 62/208 (29%), Positives = 107/208 (51%), Gaps = 1/208 (0%)
 Frame = +1

Query: 157 PVKFCRFSPDGRLFASTSSDCTIRLWDVAKVECLQVLKGHQRSVETVSFSPDSKQLASGG 336
           PV+  R +    L  + S   +IR+WD+   + L+ L GH+ ++ ++ F P  + +ASG 
Sbjct: 65  PVESVRLNTPEELIVAGSQSGSIRVWDLEAAKILRTLMGHKANICSLDFHPYGEFVASGS 124

Query: 337 WDKRVMLWEVQSGQVLRHLVGHRDSIQSSDFAPSSDCLATGSWDSTIRMWDLRGGTGAIF 516
            D  + LW+++    +    GH  +++   F+P    LA+ + D T+++WDL  G     
Sbjct: 125 QDTNIKLWDIRRKGCVFRYRGHSQAVRCLRFSPDGKWLASAADDHTVKLWDLTAGK---M 181

Query: 517 HQELEGHRGNISCLCFSAFG-LLASGSWDKTIHIWKPSTRSLLVQLKGHVTWVKSIAFSP 693
             E  GH G ++ + F     LLASGS D+TI  W      ++  ++G    V+S+ F+P
Sbjct: 182 MSEFPGHTGPVNVVEFHPNEYLLASGSSDRTIRFWDLEKFQVVSCIEGEPGPVRSVLFNP 241

Query: 694 DGLQLASAGYSHTVKVWDCNTGRCTDTL 777
           DG  L S G   +++V+     RC D +
Sbjct: 242 DGCCLYS-GCQDSLRVYGWEPERCFDVV 268



 Score = 53.9 bits (128), Expect = 3e-07
 Identities = 31/71 (43%), Positives = 39/71 (54%), Gaps = 1/71 (1%)
 Frame = +1

Query: 154 GPVKFCRFSPDGRLFASTSSDCTIRLWDVAKVECLQVLKGHQRSVETVSFSPDSKQLASG 333
           GPV    F P+  L AS SSD TIR WD+ K + +  ++G    V +V F+PD   L SG
Sbjct: 190 GPVNVVEFHPNEYLLASGSSDRTIRFWDLEKFQVVSCIEGEPGPVRSVLFNPDGCCLYSG 249

Query: 334 GWDK-RVMLWE 363
             D  RV  WE
Sbjct: 250 CQDSLRVYGWE 260


>ref|NP_008882.2| TBP-associated factor 5 [Homo sapiens]
          Length = 800

 Score =  134 bits (337), Expect = 2e-31
 Identities = 82/210 (39%), Positives = 107/210 (50%), Gaps = 2/210 (0%)
 Frame = +1

Query: 124  SEILLPAPRGGPVKFCRFSPDGRLFASTSSDCTIRLWDVAKVECLQVLKGHQRSVETVSF 303
            SE+ +     GPV    FSPD     S+S D T+RLW +    CL   KGH   V    F
Sbjct: 534  SELKILYGHSGPVYGASFSPDRNYLLSSSEDGTVRLWSLQTFTCLVGYKGHNYPVWDTQF 593

Query: 304  SPDSKQLASGGWDKRVMLWEVQSGQVLRHLVGHRDSIQSSDFAPSSDCLATGSWDSTIRM 483
            SP      SGG D+   LW     Q LR   GH   +  + F P+S+ +ATGS D T+R+
Sbjct: 594  SPYGYYFVSGGHDRVARLWATDHYQPLRIFAGHLADVNCTRFHPNSNYVATGSADRTVRL 653

Query: 484  WD-LRGGTGAIFHQELEGHRGNISCLCFSAFG-LLASGSWDKTIHIWKPSTRSLLVQLKG 657
            WD L G    IF     GH+G I  L FS  G  LA+G+ D  + +W      ++ +LKG
Sbjct: 654  WDVLNGNCVRIF----TGHKGPIHSLTFSPNGRFLATGATDGRVLLWDIGHGLMVGELKG 709

Query: 658  HVTWVKSIAFSPDGLQLASAGYSHTVKVWD 747
            H   V S+ FS DG  LAS    +TV++WD
Sbjct: 710  HTDTVCSLRFSRDGEILASGSMDNTVRLWD 739



 Score =  101 bits (252), Expect = 1e-21
 Identities = 69/228 (30%), Positives = 99/228 (43%), Gaps = 5/228 (2%)
 Frame = +1

Query: 184  DGRLFASTSSDCTIRLWDVAKVECLQVLKGHQRSVETVSFSPDSKQLASGGWDKRVMLWE 363
            D  L    S D   R+ D      L++L GH   V   SFSPD   L S   D  V LW 
Sbjct: 512  DLSLIDKESDDVLERIMDEKTASELKILYGHSGPVYGASFSPDRNYLLSSSEDGTVRLWS 571

Query: 364  VQSGQVLRHLVGHRDSIQSSDFAPSSDCLATGSWDSTIRMWDLRGGTGAIFHQE----LE 531
            +Q+   L    GH   +  + F+P      +G  D   R+W       A  H +      
Sbjct: 572  LQTFTCLVGYKGHNYPVWDTQFSPYGYYFVSGGHDRVARLW-------ATDHYQPLRIFA 624

Query: 532  GHRGNISCLCFSA-FGLLASGSWDKTIHIWKPSTRSLLVQLKGHVTWVKSIAFSPDGLQL 708
            GH  +++C  F      +A+GS D+T+ +W     + +    GH   + S+ FSP+G  L
Sbjct: 625  GHLADVNCTRFHPNSNYVATGSADRTVRLWDVLNGNCVRIFTGHKGPIHSLTFSPNGRFL 684

Query: 709  ASAGYSHTVKVWDCNTGRCTDTLKGVLDVAHSCAFTPDGKLLVSGTAD 852
            A+      V +WD   G     LKG  D   S  F+ DG++L SG+ D
Sbjct: 685  ATGATDGRVLLWDIGHGLMVGELKGHTDTVCSLRFSRDGEILASGSMD 732



 Score = 53.9 bits (128), Expect = 3e-07
 Identities = 58/243 (23%), Positives = 83/243 (34%), Gaps = 43/243 (17%)
 Frame = +1

Query: 253  CLQVLKGHQRSVETVSFSPDSKQLASGGWDKRVMLWEVQSGQVLRHLVGHRDSIQSSDFA 432
            C        + +  V  + DS  +A G  D  V +W V   ++       R   Q+SD +
Sbjct: 462  CFYTFLNAYQGLTAVDVTDDSSLIAGGFADSTVRVWSVTPKKL-------RSVKQASDLS 514

Query: 433  PSSDCLATGSWDSTIRMWDLRGGTGAIFHQELEGHRGNISCLCFSAF-GLLASGSWDKTI 609
                 +   S D   R+ D +  +     + L GH G +    FS     L S S D T+
Sbjct: 515  ----LIDKESDDVLERIMDEKTASEL---KILYGHSGPVYGASFSPDRNYLLSSSEDGTV 567

Query: 610  HIWKPSTRSLLVQLKGHVTWVKSIAFSPDGLQLASAGY---------------------- 723
             +W   T + LV  KGH   V    FSP G    S G+                      
Sbjct: 568  RLWSLQTFTCLVGYKGHNYPVWDTQFSPYGYYFVSGGHDRVARLWATDHYQPLRIFAGHL 627

Query: 724  --------------------SHTVKVWDCNTGRCTDTLKGVLDVAHSCAFTPDGKLLVSG 843
                                  TV++WD   G C     G     HS  F+P+G+ L +G
Sbjct: 628  ADVNCTRFHPNSNYVATGSADRTVRLWDVLNGNCVRIFTGHKGPIHSLTFSPNGRFLATG 687

Query: 844  TAD 852
              D
Sbjct: 688  ATD 690


>ref|NP_055224.1| PCAF associated factor 65 beta isoform a [Homo sapiens]
          Length = 589

 Score =  125 bits (315), Expect = 5e-29
 Identities = 81/235 (34%), Positives = 112/235 (47%), Gaps = 3/235 (1%)
 Frame = +1

Query: 88   EQRGPRDAGGGESEILLPAPRG--GPVKFCRFSPDGRLFASTSSDCTIRLWDVAKVECLQ 261
            E+    D  G E +IL    RG  GPV   RF  D     S S D +IR WD+       
Sbjct: 323  EEDDEDDNAGTEMKIL----RGHCGPVYSTRFLADSSGLLSCSEDMSIRYWDLGSFTNTV 378

Query: 262  VLKGHQRSVETVSFSPDSKQLASGGWDKRVMLWEVQSGQVLRHLVGHRDSIQSSDFAPSS 441
            + +GH   V  +  SP S   ASG  D+   LW       LR   GH   +    F P+S
Sbjct: 379  LYQGHAYPVWDLDISPYSLYFASGSHDRTARLWSFDRTYPLRIYAGHLADVDCVKFHPNS 438

Query: 442  DCLATGSWDSTIRMWDLRGGTGAIFHQELEGHRGNISCLCFSAFG-LLASGSWDKTIHIW 618
            + LATGS D T+R+W  + G      +   GHRG +  L FS  G  LAS   D+ + +W
Sbjct: 439  NYLATGSTDKTVRLWSAQQGNSV---RLFTGHRGPVLSLAFSPNGKYLASAGEDQRLKLW 495

Query: 619  KPSTRSLLVQLKGHVTWVKSIAFSPDGLQLASAGYSHTVKVWDCNTGRCTDTLKG 783
              ++ +L  +L+GH   + S+ FSPD   +ASA   ++V+VWD     C+    G
Sbjct: 496  DLASGTLYKELRGHTDNITSLTFSPDSGLIASASMDNSVRVWDIRNTYCSAPADG 550



 Score =  100 bits (250), Expect = 2e-21
 Identities = 74/260 (28%), Positives = 112/260 (43%), Gaps = 33/260 (12%)
 Frame = +1

Query: 178  SPDGRLFASTSSDCTIRLW--------------DVAKVEC------------------LQ 261
            SPD +L A+   +  I+LW              DV+++                    ++
Sbjct: 277  SPDSKLLAAGFDNSCIKLWSLRSKKLKSEPHQVDVSRIHLACDILEEEDDEDDNAGTEMK 336

Query: 262  VLKGHQRSVETVSFSPDSKQLASGGWDKRVMLWEVQSGQVLRHLVGHRDSIQSSDFAPSS 441
            +L+GH   V +  F  DS  L S   D  +  W++ S        GH   +   D +P S
Sbjct: 337  ILRGHCGPVYSTRFLADSSGLLSCSEDMSIRYWDLGSFTNTVLYQGHAYPVWDLDISPYS 396

Query: 442  DCLATGSWDSTIRMWDLRGGTGAIFHQELEGHRGNISCLCFSA-FGLLASGSWDKTIHIW 618
               A+GS D T R+W          +    GH  ++ C+ F      LA+GS DKT+ +W
Sbjct: 397  LYFASGSHDRTARLWSFDRTYPLRIYA---GHLADVDCVKFHPNSNYLATGSTDKTVRLW 453

Query: 619  KPSTRSLLVQLKGHVTWVKSIAFSPDGLQLASAGYSHTVKVWDCNTGRCTDTLKGVLDVA 798
                 + +    GH   V S+AFSP+G  LASAG    +K+WD  +G     L+G  D  
Sbjct: 454  SAQQGNSVRLFTGHRGPVLSLAFSPNGKYLASAGEDQRLKLWDLASGTLYKELRGHTDNI 513

Query: 799  HSCAFTPDGKLLVSGTADQA 858
             S  F+PD  L+ S + D +
Sbjct: 514  TSLTFSPDSGLIASASMDNS 533



 Score = 95.9 bits (237), Expect = 6e-20
 Identities = 49/145 (33%), Positives = 82/145 (56%), Gaps = 8/145 (5%)
 Frame = +1

Query: 172 RFSPDGRLFASTSSDCTIRLWDVAKVECLQVLKGHQRSVETVSFSPDSKQLASGGWDKRV 351
           +F P+    A+ S+D T+RLW   +   +++  GH+  V +++FSP+ K LAS G D+R+
Sbjct: 433 KFHPNSNYLATGSTDKTVRLWSAQQGNSVRLFTGHRGPVLSLAFSPNGKYLASAGEDQRL 492

Query: 352 MLWEVQSGQVLRHLVGHRDSIQSSDFAPSSDCLATGSWDSTIRMWDLRG--------GTG 507
            LW++ SG + + L GH D+I S  F+P S  +A+ S D+++R+WD+R         G+ 
Sbjct: 493 KLWDLASGTLYKELRGHTDNITSLTFSPDSGLIASASMDNSVRVWDIRNTYCSAPADGSS 552

Query: 508 AIFHQELEGHRGNISCLCFSAFGLL 582
           +       G   N+  + F A  LL
Sbjct: 553 SELVGVYTGQMSNVLSVQFMACNLL 577


>ref|NP_061942.2| WD repeat domain 5B [Homo sapiens]
          Length = 330

 Score =  125 bits (314), Expect = 7e-29
 Identities = 79/240 (32%), Positives = 129/240 (53%), Gaps = 9/240 (3%)
 Frame = +1

Query: 160 VKFCRFSPDGRLFASTSSDCTIRLWDVAKVECLQVLKGHQRSVETVSFSPDSKQLASGGW 339
           V   +FSP+G   AS+S+D  I +W     +  + L GH   +  V++S DS +L S   
Sbjct: 44  VSSVKFSPNGEWLASSSADRLIIIWGAYDGKYEKTLYGHNLEISDVAWSSDSSRLVSASD 103

Query: 340 DKRVMLWEVQSGQVLRHLVGHRDSIQSSDFAPSSDCLATGSWDSTIRMWDLRGGTGAIFH 519
           DK + LW+V+SG+ L+ L GH + +   +F P S+ + +GS+D T+++W+++ G      
Sbjct: 104 DKTLKLWDVRSGKCLKTLKGHSNYVFCCNFNPPSNLIISGSFDETVKIWEVKTGKCL--- 160

Query: 520 QELEGHRGNISCLCFSAFG-LLASGSWDKTIHIWKPSTRSLLVQL----KGHVTWVKSIA 684
           + L  H   +S + F+  G L+ SGS+D    IW  ++   L  L       V++VK   
Sbjct: 161 KTLSAHSDPVSAVHFNCSGSLIVSGSYDGLCRIWDAASGQCLKTLVDDDNPPVSFVK--- 217

Query: 685 FSPDGLQLASAGYSHTVKVWDCNTGRCTDTLKGVLDVAHSCAF----TPDGKLLVSGTAD 852
           FSP+G  + +A   +T+K+WD + GRC  T  G  +  + C F       GK +VSG+ D
Sbjct: 218 FSPNGKYILTATLDNTLKLWDYSRGRCLKTYTGHKNEKY-CIFANFSVTGGKWIVSGSED 276



 Score =  108 bits (271), Expect = 7e-24
 Identities = 66/200 (33%), Positives = 107/200 (53%), Gaps = 4/200 (2%)
 Frame = +1

Query: 265 LKGHQRSVETVSFSPDSKQLASGGWDKRVMLWEVQSGQVLRHLVGHRDSIQSSDFAPSSD 444
           L GH  +V +V FSP+ + LAS   D+ +++W    G+  + L GH  +++ SD A SSD
Sbjct: 37  LVGHTEAVSSVKFSPNGEWLASSSADRLIIIWGAYDGKYEKTLYGH--NLEISDVAWSSD 94

Query: 445 C--LATGSWDSTIRMWDLRGGTGAIFHQELEGHRGNISCLCFS-AFGLLASGSWDKTIHI 615
              L + S D T+++WD+R G      + L+GH   + C  F+    L+ SGS+D+T+ I
Sbjct: 95  SSRLVSASDDKTLKLWDVRSGKCL---KTLKGHSNYVFCCNFNPPSNLIISGSFDETVKI 151

Query: 616 WKPSTRSLLVQLKGHVTWVKSIAFSPDGLQLASAGYSHTVKVWDCNTGRCTDTLKGVLDV 795
           W+  T   L  L  H   V ++ F+  G  + S  Y    ++WD  +G+C  TL    + 
Sbjct: 152 WEVKTGKCLKTLSAHSDPVSAVHFNCSGSLIVSGSYDGLCRIWDAASGQCLKTLVDDDNP 211

Query: 796 AHS-CAFTPDGKLLVSGTAD 852
             S   F+P+GK +++ T D
Sbjct: 212 PVSFVKFSPNGKYILTATLD 231



 Score =  107 bits (266), Expect = 3e-23
 Identities = 68/231 (29%), Positives = 107/231 (46%), Gaps = 5/231 (2%)
 Frame = +1

Query: 175 FSPDGRLFASTSSDCTIRLWDVAKVECLQVLKGHQRSVETVSFSPDSKQLASGGWDKRVM 354
           +S D     S S D T++LWDV   +CL+ LKGH   V   +F+P S  + SG +D+ V 
Sbjct: 91  WSSDSSRLVSASDDKTLKLWDVRSGKCLKTLKGHSNYVFCCNFNPPSNLIISGSFDETVK 150

Query: 355 LWEVQSGQVLRHLVGHRDSIQSSDFAPSSDCLATGSWDSTIRMWDLRGGTGAIFHQELEG 534
           +WEV++G+ L+ L  H D + +  F  S   + +GS+D   R+WD    +G      ++ 
Sbjct: 151 IWEVKTGKCLKTLSAHSDPVSAVHFNCSGSLIVSGSYDGLCRIWD--AASGQCLKTLVDD 208

Query: 535 HRGNISCLCFSAFG-LLASGSWDKTIHIWKPSTRSLLVQLKGHVTWVKSIAFS----PDG 699
               +S + FS  G  + + + D T+ +W  S    L    GH    K   F+      G
Sbjct: 209 DNPPVSFVKFSPNGKYILTATLDNTLKLWDYSRGRCLKTYTGHKN-EKYCIFANFSVTGG 267

Query: 700 LQLASAGYSHTVKVWDCNTGRCTDTLKGVLDVAHSCAFTPDGKLLVSGTAD 852
             + S    + V +W+  T      L+G  DV  S A  P   L+ S   +
Sbjct: 268 KWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISAACHPTENLIASAALE 318



 Score = 73.9 bits (180), Expect = 2e-13
 Identities = 40/132 (30%), Positives = 71/132 (53%), Gaps = 5/132 (3%)
 Frame = +1

Query: 106 DAGGGESEILLPAPRGGPVKFCRFSPDGRLFASTSSDCTIRLWDVAKVECLQVLKGHQRS 285
           DA  G+    L      PV F +FSP+G+   + + D T++LWD ++  CL+   GH+  
Sbjct: 195 DAASGQCLKTLVDDDNPPVSFVKFSPNGKYILTATLDNTLKLWDYSRGRCLKTYTGHKNE 254

Query: 286 VETV--SFS-PDSKQLASGGWDKRVMLWEVQSGQVLRHLVGHRDSIQSSDFAPSSDCLAT 456
              +  +FS    K + SG  D  V +W +Q+ ++++ L GH D + S+   P+ + +A+
Sbjct: 255 KYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISAACHPTENLIAS 314

Query: 457 GSW--DSTIRMW 486
            +   D TI++W
Sbjct: 315 AALENDKTIKLW 326



 Score = 71.2 bits (173), Expect = 2e-12
 Identities = 51/161 (31%), Positives = 78/161 (48%), Gaps = 7/161 (4%)
 Frame = +1

Query: 157 PVKFCRFSPDGRLFASTSSDCTIRLWDVAKVECLQVLKGHQR-SVETVSFSPDSKQLASG 333
           PV    F+  G L  S S D   R+WD A  +CL+ L       V  V FSP+ K + + 
Sbjct: 169 PVSAVHFNCSGSLIVSGSYDGLCRIWDAASGQCLKTLVDDDNPPVSFVKFSPNGKYILTA 228

Query: 334 GWDKRVMLWEVQSGQVLRHLVGHRDS---IQSSDFAPSSDCLATGSWDSTIRMWDLRGGT 504
             D  + LW+   G+ L+   GH++    I ++        + +GS D+ + +W+L+  T
Sbjct: 229 TLDNTLKLWDYSRGRCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQ--T 286

Query: 505 GAIFHQELEGHRG-NISCLCFSAFGLLASGSW--DKTIHIW 618
             I  Q+L+GH    IS  C     L+AS +   DKTI +W
Sbjct: 287 KEIV-QKLQGHTDVVISAACHPTENLIASAALENDKTIKLW 326



 Score = 70.9 bits (172), Expect = 2e-12
 Identities = 41/111 (36%), Positives = 57/111 (51%), Gaps = 1/111 (0%)
 Frame = +1

Query: 526 LEGHRGNISCLCFSAFG-LLASGSWDKTIHIWKPSTRSLLVQLKGHVTWVKSIAFSPDGL 702
           L GH   +S + FS  G  LAS S D+ I IW          L GH   +  +A+S D  
Sbjct: 37  LVGHTEAVSSVKFSPNGEWLASSSADRLIIIWGAYDGKYEKTLYGHNLEISDVAWSSDSS 96

Query: 703 QLASAGYSHTVKVWDCNTGRCTDTLKGVLDVAHSCAFTPDGKLLVSGTADQ 855
           +L SA    T+K+WD  +G+C  TLKG  +    C F P   L++SG+ D+
Sbjct: 97  RLVSASDDKTLKLWDVRSGKCLKTLKGHSNYVFCCNFNPPSNLIISGSFDE 147


>ref|NP_000421.1| platelet-activating factor acetylhydrolase, isoform Ib, alpha
           subunit (45kD) [Homo sapiens]
          Length = 410

 Score =  125 bits (313), Expect = 9e-29
 Identities = 76/248 (30%), Positives = 114/248 (45%), Gaps = 21/248 (8%)
 Frame = +1

Query: 175 FSPDGRLFASTSSDCTIRLWDVAKVECLQVLKGHQRSVETVSFSPDSKQLASGGWDKRVM 354
           F   G+L AS S+D TI+LWD    EC++ + GH  +V +V+  P+   + S   DK + 
Sbjct: 158 FDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVAIMPNGDHIVSASRDKTIK 217

Query: 355 LWEVQSGQVLRHLVGHRDSIQSSDFAPSSDCLATGSWDSTIRMWDLRGGTGAIFHQELEG 534
           +WEVQ+G  ++   GHR+ ++          +A+ S D T+R+W +          EL  
Sbjct: 218 MWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVV---ATKECKAELRE 274

Query: 535 HRGNISCLCFS----------AFG-----------LLASGSWDKTIHIWKPSTRSLLVQL 651
           H   + C+ ++          A G            L SGS DKTI +W  ST   L+ L
Sbjct: 275 HEHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTL 334

Query: 652 KGHVTWVKSIAFSPDGLQLASAGYSHTVKVWDCNTGRCTDTLKGVLDVAHSCAFTPDGKL 831
            GH  WV+ + F   G  + S     T++VWD    RC  TL        S  F      
Sbjct: 335 VGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPY 394

Query: 832 LVSGTADQ 855
           +V+G+ DQ
Sbjct: 395 VVTGSVDQ 402



 Score =  113 bits (282), Expect = 4e-25
 Identities = 75/254 (29%), Positives = 120/254 (47%), Gaps = 21/254 (8%)
 Frame = +1

Query: 157 PVKFCRFSPDGRLFASTSSDCTIRLWDVAKVECLQVLKGHQRSVETVSFSPDSKQLASGG 336
           PV    F P   +  S S D TI++WD    +  + LKGH  SV+ +SF    K LAS  
Sbjct: 110 PVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCS 169

Query: 337 WDKRVMLWEVQSGQVLRHLVGHRDSIQSSDFAPSSDCLATGSWDSTIRMWDLRGGTGAIF 516
            D  + LW+ Q  + +R + GH  ++ S    P+ D + + S D TI+MW+++ G     
Sbjct: 170 ADMTIKLWDFQGFECIRTMHGHDHNVSSVAIMPNGDHIVSASRDKTIKMWEVQTGYCV-- 227

Query: 517 HQELEGHRGNISCLCFSAFG-LLASGSWDKTIHIWKPSTRSLLVQLKGHVTWVKSIAFSP 693
            +   GHR  +  +  +  G L+AS S D+T+ +W  +T+    +L+ H   V+ I+++P
Sbjct: 228 -KTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHEHVVECISWAP 286

Query: 694 D--------------------GLQLASAGYSHTVKVWDCNTGRCTDTLKGVLDVAHSCAF 813
           +                    G  L S     T+K+WD +TG C  TL G  +      F
Sbjct: 287 ESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLF 346

Query: 814 TPDGKLLVSGTADQ 855
              GK ++S   D+
Sbjct: 347 HSGGKFILSCADDK 360



 Score = 97.8 bits (242), Expect = 2e-20
 Identities = 59/187 (31%), Positives = 88/187 (47%), Gaps = 1/187 (0%)
 Frame = +1

Query: 265 LKGHQRSVETVSFSPDSKQLASGGWDKRVMLWEVQSGQVLRHLVGHRDSIQSSDFAPSSD 444
           L GH+  V  V F P    + S   D  + +W+ ++G   R L GH DS+Q   F  S  
Sbjct: 104 LSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGK 163

Query: 445 CLATGSWDSTIRMWDLRGGTGAIFHQELEGHRGNISCLCFSAFG-LLASGSWDKTIHIWK 621
            LA+ S D TI++WD +G       + + GH  N+S +     G  + S S DKTI +W+
Sbjct: 164 LLASCSADMTIKLWDFQGFECI---RTMHGHDHNVSSVAIMPNGDHIVSASRDKTIKMWE 220

Query: 622 PSTRSLLVQLKGHVTWVKSIAFSPDGLQLASAGYSHTVKVWDCNTGRCTDTLKGVLDVAH 801
             T   +    GH  WV+ +  + DG  +AS     TV+VW   T  C   L+    V  
Sbjct: 221 VQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHEHVVE 280

Query: 802 SCAFTPD 822
             ++ P+
Sbjct: 281 CISWAPE 287



 Score = 67.4 bits (163), Expect = 2e-11
 Identities = 34/103 (33%), Positives = 54/103 (52%)
 Frame = +1

Query: 187 GRLFASTSSDCTIRLWDVAKVECLQVLKGHQRSVETVSFSPDSKQLASGGWDKRVMLWEV 366
           G    S S D TI++WDV+   CL  L GH   V  V F    K + S   DK + +W+ 
Sbjct: 308 GPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDY 367

Query: 367 QSGQVLRHLVGHRDSIQSSDFAPSSDCLATGSWDSTIRMWDLR 495
           ++ + ++ L  H   + S DF  ++  + TGS D T+++W+ R
Sbjct: 368 KNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWECR 410


  Database: RefSeqHP
    Posted date:  Aug 2, 2006 12:57 AM
  Number of letters in database: 17,774,539
  Number of sequences in database:  39,411
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 55,743,995
Number of Sequences: 39411
Number of extensions: 1786868
Number of successful extensions: 9615
Number of sequences better than 1.0e-05: 10
Number of HSP's better than  0.0 without gapping: 5390
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8140
length of database: 17,774,539
effective HSP length: 104
effective length of database: 13,675,795
effective search space used: 4007007935
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

Search to RefSeqCP

BLASTX 2.2.10 [Oct-19-2004]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20060611S-030165
         (1194 letters)

Database: RefSeqCP 
           33,732 sequences; 19,266,565 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|XP_534593.2| PREDICTED: similar to CG7568-PA [Canis familiaris]   143   3e-34
Alignment   gi|XP_862542.1| PREDICTED: similar to Katanin p80 WD40-containi...   137   2e-32
Alignment   gi|XP_850865.1| PREDICTED: similar to Katanin p80 WD40-containi...   137   2e-32
Alignment   gi|XP_546100.2| PREDICTED: similar to TAF5-like RNA polymerase ...   127   3e-29
Alignment   gi|XP_532646.2| PREDICTED: similar to WD repeat domain 51B [Can...   126   4e-29
Alignment   gi|XP_537775.2| PREDICTED: similar to platelet-activating facto...   125   1e-28
Alignment   gi|XP_854482.1| PREDICTED: similar to platelet-activating facto...   125   1e-28
Alignment   gi|XP_868508.1| PREDICTED: similar to platelet-activating facto...   125   1e-28
Alignment   gi|XP_868519.1| PREDICTED: similar to platelet-activating facto...   123   4e-28
Alignment   gi|XP_850117.1| PREDICTED: similar to WD repeat domain 5 [Canis...   117   3e-26

>ref|XP_534593.2| PREDICTED: similar to CG7568-PA [Canis familiaris]
          Length = 415

 Score =  143 bits (361), Expect = 3e-34
 Identities = 76/233 (32%), Positives = 121/233 (51%), Gaps = 1/233 (0%)
 Frame = +1

Query: 175 FSPDGRLFASTSSDCTIRLWDVAKVECLQVLKGHQRSVETVSFSPDSKQLASGGWDKRVM 354
           F+P   L A+ S D T +LWD+   E +  L+GH   + ++SF+    ++ +G +D  V 
Sbjct: 185 FNPQSTLVATGSMDTTAKLWDIQSGEEVFTLRGHSAEIISLSFNTSGDRIVTGSFDHTVA 244

Query: 355 LWEVQSGQVLRHLVGHRDSIQSSDFAPSSDCLATGSWDSTIRMWDLRGGTGAIFHQELEG 534
           +WE  +G+ +  L+GH   I S+ F      + TGS D T  +WD   G        L G
Sbjct: 245 VWEADTGRKVYTLIGHCAEISSALFNWDCSLILTGSMDKTCMLWDASNGKCVA---TLTG 301

Query: 535 HRGNISCLCFSAFG-LLASGSWDKTIHIWKPSTRSLLVQLKGHVTWVKSIAFSPDGLQLA 711
           H   I   CF   G L+A+ S D T  ++  +TR  L +L+GH   +  I+F+P G +L 
Sbjct: 302 HDDEILDSCFDYTGKLIATASADGTARVFSAATRKCLTKLEGHEGEISKISFNPQGNRLL 361

Query: 712 SAGYSHTVKVWDCNTGRCTDTLKGVLDVAHSCAFTPDGKLLVSGTADQARCQV 870
           +     T ++WD  TG+C   L+G  D   SCAF   G ++++G+ D   C++
Sbjct: 362 TGSADETARIWDAQTGQCLQVLEGHTDEIFSCAFNYKGDIIITGSKDNT-CRI 413



 Score =  130 bits (327), Expect = 3e-30
 Identities = 75/234 (32%), Positives = 115/234 (49%), Gaps = 2/234 (0%)
 Frame = +1

Query: 157 PVKFCRFSPDGRLFASTSSDCTIRLWDVAKVECLQVLKGHQRSVETVSF-SPDSKQLASG 333
           P+     +  G  F + S D T +LWD A  E L  L+GH+  V  ++F +P   ++A+G
Sbjct: 94  PLTNVALNKSGSCFITGSYDRTCKLWDTASGEELHTLEGHRNVVYAIAFNNPYGDKIATG 153

Query: 334 GWDKRVMLWEVQSGQVLRHLVGHRDSIQSSDFAPSSDCLATGSWDSTIRMWDLRGGTGAI 513
            +DK   LW V++G+      GH   I    F P S  +ATGS D+T ++WD++ G    
Sbjct: 154 SFDKTCKLWSVETGKCYHTFRGHTAEIVCLSFNPQSTLVATGSMDTTAKLWDIQSGEEVF 213

Query: 514 FHQELEGHRGNISCLCFSAFG-LLASGSWDKTIHIWKPSTRSLLVQLKGHVTWVKSIAFS 690
               L GH   I  L F+  G  + +GS+D T+ +W+  T   +  L GH   + S  F+
Sbjct: 214 ---TLRGHSAEIISLSFNTSGDRIVTGSFDHTVAVWEADTGRKVYTLIGHCAEISSALFN 270

Query: 691 PDGLQLASAGYSHTVKVWDCNTGRCTDTLKGVLDVAHSCAFTPDGKLLVSGTAD 852
            D   + +     T  +WD + G+C  TL G  D      F   GKL+ + +AD
Sbjct: 271 WDCSLILTGSMDKTCMLWDASNGKCVATLTGHDDEILDSCFDYTGKLIATASAD 324



 Score =  111 bits (278), Expect = 1e-24
 Identities = 64/201 (31%), Positives = 105/201 (52%), Gaps = 2/201 (0%)
 Frame = +1

Query: 259 QVLKGHQRSVETVSFSPDSKQLASGGWDKRVMLWEVQSGQVLRHLVGHRDSIQSSDF-AP 435
           +VL+ H   +  V+ +       +G +D+   LW+  SG+ L  L GHR+ + +  F  P
Sbjct: 86  KVLRAHILPLTNVALNKSGSCFITGSYDRTCKLWDTASGEELHTLEGHRNVVYAIAFNNP 145

Query: 436 SSDCLATGSWDSTIRMWDLRGGTGAIFHQELEGHRGNISCLCFSAFG-LLASGSWDKTIH 612
             D +ATGS+D T ++W +   TG  +H    GH   I CL F+    L+A+GS D T  
Sbjct: 146 YGDKIATGSFDKTCKLWSVE--TGKCYH-TFRGHTAEIVCLSFNPQSTLVATGSMDTTAK 202

Query: 613 IWKPSTRSLLVQLKGHVTWVKSIAFSPDGLQLASAGYSHTVKVWDCNTGRCTDTLKGVLD 792
           +W   +   +  L+GH   + S++F+  G ++ +  + HTV VW+ +TGR   TL G   
Sbjct: 203 LWDIQSGEEVFTLRGHSAEIISLSFNTSGDRIVTGSFDHTVAVWEADTGRKVYTLIGHCA 262

Query: 793 VAHSCAFTPDGKLLVSGTADQ 855
              S  F  D  L+++G+ D+
Sbjct: 263 EISSALFNWDCSLILTGSMDK 283



 Score = 84.3 bits (207), Expect = 2e-16
 Identities = 40/104 (38%), Positives = 61/104 (58%)
 Frame = +1

Query: 175 FSPDGRLFASTSSDCTIRLWDVAKVECLQVLKGHQRSVETVSFSPDSKQLASGGWDKRVM 354
           F   G+L A+ S+D T R++  A  +CL  L+GH+  +  +SF+P   +L +G  D+   
Sbjct: 311 FDYTGKLIATASADGTARVFSAATRKCLTKLEGHEGEISKISFNPQGNRLLTGSADETAR 370

Query: 355 LWEVQSGQVLRHLVGHRDSIQSSDFAPSSDCLATGSWDSTIRMW 486
           +W+ Q+GQ L+ L GH D I S  F    D + TGS D+T R+W
Sbjct: 371 IWDAQTGQCLQVLEGHTDEIFSCAFNYKGDIIITGSKDNTCRIW 414


>ref|XP_862542.1| PREDICTED: similar to Katanin p80 WD40-containing subunit B1
           (Katanin p80 subunit B1) (p80 katanin) isoform 2 [Canis
           familiaris]
          Length = 655

 Score =  137 bits (346), Expect = 2e-32
 Identities = 73/226 (32%), Positives = 116/226 (51%), Gaps = 1/226 (0%)
 Frame = +1

Query: 187 GRLFASTSSDCTIRLWDVAKVECLQVLKGHQRSVETVSFSPDSKQLASGGWDKRVMLWEV 366
           GRL A+   DC + LW + K  C+  L GH   VE+V  +   + + +G     + +W++
Sbjct: 33  GRLLATGGDDCRVNLWSINKPNCIMSLTGHTSPVESVRLNTPEELIVAGSQSGSIRVWDL 92

Query: 367 QSGQVLRHLVGHRDSIQSSDFAPSSDCLATGSWDSTIRMWDLRGGTGAIFHQELEGHRGN 546
           ++ ++LR L+GH+ +I S DF P  + +A+GS D+ I++WD+R   G +F     GH   
Sbjct: 93  EAAKILRTLMGHKANICSLDFHPYGEFVASGSQDTNIKLWDIR-RKGCVF--RYRGHSQA 149

Query: 547 ISCLCFSAFG-LLASGSWDKTIHIWKPSTRSLLVQLKGHVTWVKSIAFSPDGLQLASAGY 723
           + CL FS  G  LAS + D T+ +W  +   ++ +  GH   V  + F P+   LAS   
Sbjct: 150 VRCLRFSPDGKWLASAADDHTVKLWDLTAGKMMSEFPGHTGPVNVVEFHPNEYLLASGSS 209

Query: 724 SHTVKVWDCNTGRCTDTLKGVLDVAHSCAFTPDGKLLVSGTADQAR 861
             T++ WD    +    ++G      S  F PDG  L SG  D  R
Sbjct: 210 DRTIRFWDLEKFQVVSCIEGEPGPVRSVLFNPDGCCLYSGCQDSLR 255



 Score =  105 bits (261), Expect = 1e-22
 Identities = 62/208 (29%), Positives = 107/208 (51%), Gaps = 1/208 (0%)
 Frame = +1

Query: 157 PVKFCRFSPDGRLFASTSSDCTIRLWDVAKVECLQVLKGHQRSVETVSFSPDSKQLASGG 336
           PV+  R +    L  + S   +IR+WD+   + L+ L GH+ ++ ++ F P  + +ASG 
Sbjct: 65  PVESVRLNTPEELIVAGSQSGSIRVWDLEAAKILRTLMGHKANICSLDFHPYGEFVASGS 124

Query: 337 WDKRVMLWEVQSGQVLRHLVGHRDSIQSSDFAPSSDCLATGSWDSTIRMWDLRGGTGAIF 516
            D  + LW+++    +    GH  +++   F+P    LA+ + D T+++WDL  G     
Sbjct: 125 QDTNIKLWDIRRKGCVFRYRGHSQAVRCLRFSPDGKWLASAADDHTVKLWDLTAGK---M 181

Query: 517 HQELEGHRGNISCLCFSAFG-LLASGSWDKTIHIWKPSTRSLLVQLKGHVTWVKSIAFSP 693
             E  GH G ++ + F     LLASGS D+TI  W      ++  ++G    V+S+ F+P
Sbjct: 182 MSEFPGHTGPVNVVEFHPNEYLLASGSSDRTIRFWDLEKFQVVSCIEGEPGPVRSVLFNP 241

Query: 694 DGLQLASAGYSHTVKVWDCNTGRCTDTL 777
           DG  L S G   +++V+     RC D +
Sbjct: 242 DGCCLYS-GCQDSLRVYGWEPERCFDVV 268



 Score = 93.2 bits (230), Expect = 4e-19
 Identities = 63/188 (33%), Positives = 92/188 (48%), Gaps = 2/188 (1%)
 Frame = +1

Query: 175 FSPDGRLFASTSSDCTIRLWDVAKVECLQVLKGHQRSVETVSFSPDSKQLASGGWDKRVM 354
           F P G   AS S D  I+LWD+ +  C+   +GH ++V  + FSPD K LAS   D  V 
Sbjct: 113 FHPYGEFVASGSQDTNIKLWDIRRKGCVFRYRGHSQAVRCLRFSPDGKWLASAADDHTVK 172

Query: 355 LWEVQSGQVLRHLVGHRDSIQSSDFAPSSDCLATGSWDSTIRMWDLRGGTGAIFHQELEG 534
           LW++ +G+++    GH   +   +F P+   LA+GS D TIR WDL           +EG
Sbjct: 173 LWDLTAGKMMSEFPGHTGPVNVVEFHPNEYLLASGSSDRTIRFWDLEKFQVV---SCIEG 229

Query: 535 HRGNISCLCFSAFG-LLASGSWDK-TIHIWKPSTRSLLVQLKGHVTWVKSIAFSPDGLQL 708
             G +  + F+  G  L SG  D   ++ W+P  R   V L   V+W K    +    QL
Sbjct: 230 EPGPVRSVLFNPDGCCLYSGCQDSLRVYGWEPE-RCFDVVL---VSWGKVADLAVCNDQL 285

Query: 709 ASAGYSHT 732
               +S +
Sbjct: 286 IGVAFSQS 293



 Score = 53.9 bits (128), Expect = 3e-07
 Identities = 31/71 (43%), Positives = 39/71 (54%), Gaps = 1/71 (1%)
 Frame = +1

Query: 154 GPVKFCRFSPDGRLFASTSSDCTIRLWDVAKVECLQVLKGHQRSVETVSFSPDSKQLASG 333
           GPV    F P+  L AS SSD TIR WD+ K + +  ++G    V +V F+PD   L SG
Sbjct: 190 GPVNVVEFHPNEYLLASGSSDRTIRFWDLEKFQVVSCIEGEPGPVRSVLFNPDGCCLYSG 249

Query: 334 GWDK-RVMLWE 363
             D  RV  WE
Sbjct: 250 CQDSLRVYGWE 260


>ref|XP_850865.1| PREDICTED: similar to Katanin p80 WD40-containing subunit B1
           (Katanin p80 subunit B1) (p80 katanin) isoform 1 [Canis
           familiaris]
          Length = 655

 Score =  137 bits (346), Expect = 2e-32
 Identities = 73/226 (32%), Positives = 116/226 (51%), Gaps = 1/226 (0%)
 Frame = +1

Query: 187 GRLFASTSSDCTIRLWDVAKVECLQVLKGHQRSVETVSFSPDSKQLASGGWDKRVMLWEV 366
           GRL A+   DC + LW + K  C+  L GH   VE+V  +   + + +G     + +W++
Sbjct: 33  GRLLATGGDDCRVNLWSINKPNCIMSLTGHTSPVESVRLNTPEELIVAGSQSGSIRVWDL 92

Query: 367 QSGQVLRHLVGHRDSIQSSDFAPSSDCLATGSWDSTIRMWDLRGGTGAIFHQELEGHRGN 546
           ++ ++LR L+GH+ +I S DF P  + +A+GS D+ I++WD+R   G +F     GH   
Sbjct: 93  EAAKILRTLMGHKANICSLDFHPYGEFVASGSQDTNIKLWDIR-RKGCVF--RYRGHSQA 149

Query: 547 ISCLCFSAFG-LLASGSWDKTIHIWKPSTRSLLVQLKGHVTWVKSIAFSPDGLQLASAGY 723
           + CL FS  G  LAS + D T+ +W  +   ++ +  GH   V  + F P+   LAS   
Sbjct: 150 VRCLRFSPDGKWLASAADDHTVKLWDLTAGKMMSEFPGHTGPVNVVEFHPNEYLLASGSS 209

Query: 724 SHTVKVWDCNTGRCTDTLKGVLDVAHSCAFTPDGKLLVSGTADQAR 861
             T++ WD    +    ++G      S  F PDG  L SG  D  R
Sbjct: 210 DRTIRFWDLEKFQVVSCIEGEPGPVRSVLFNPDGCCLYSGCQDSLR 255



 Score =  105 bits (261), Expect = 1e-22
 Identities = 62/208 (29%), Positives = 107/208 (51%), Gaps = 1/208 (0%)
 Frame = +1

Query: 157 PVKFCRFSPDGRLFASTSSDCTIRLWDVAKVECLQVLKGHQRSVETVSFSPDSKQLASGG 336
           PV+  R +    L  + S   +IR+WD+   + L+ L GH+ ++ ++ F P  + +ASG 
Sbjct: 65  PVESVRLNTPEELIVAGSQSGSIRVWDLEAAKILRTLMGHKANICSLDFHPYGEFVASGS 124

Query: 337 WDKRVMLWEVQSGQVLRHLVGHRDSIQSSDFAPSSDCLATGSWDSTIRMWDLRGGTGAIF 516
            D  + LW+++    +    GH  +++   F+P    LA+ + D T+++WDL  G     
Sbjct: 125 QDTNIKLWDIRRKGCVFRYRGHSQAVRCLRFSPDGKWLASAADDHTVKLWDLTAGK---M 181

Query: 517 HQELEGHRGNISCLCFSAFG-LLASGSWDKTIHIWKPSTRSLLVQLKGHVTWVKSIAFSP 693
             E  GH G ++ + F     LLASGS D+TI  W      ++  ++G    V+S+ F+P
Sbjct: 182 MSEFPGHTGPVNVVEFHPNEYLLASGSSDRTIRFWDLEKFQVVSCIEGEPGPVRSVLFNP 241

Query: 694 DGLQLASAGYSHTVKVWDCNTGRCTDTL 777
           DG  L S G   +++V+     RC D +
Sbjct: 242 DGCCLYS-GCQDSLRVYGWEPERCFDVV 268



 Score = 93.2 bits (230), Expect = 4e-19
 Identities = 63/188 (33%), Positives = 92/188 (48%), Gaps = 2/188 (1%)
 Frame = +1

Query: 175 FSPDGRLFASTSSDCTIRLWDVAKVECLQVLKGHQRSVETVSFSPDSKQLASGGWDKRVM 354
           F P G   AS S D  I+LWD+ +  C+   +GH ++V  + FSPD K LAS   D  V 
Sbjct: 113 FHPYGEFVASGSQDTNIKLWDIRRKGCVFRYRGHSQAVRCLRFSPDGKWLASAADDHTVK 172

Query: 355 LWEVQSGQVLRHLVGHRDSIQSSDFAPSSDCLATGSWDSTIRMWDLRGGTGAIFHQELEG 534
           LW++ +G+++    GH   +   +F P+   LA+GS D TIR WDL           +EG
Sbjct: 173 LWDLTAGKMMSEFPGHTGPVNVVEFHPNEYLLASGSSDRTIRFWDLEKFQVV---SCIEG 229

Query: 535 HRGNISCLCFSAFG-LLASGSWDK-TIHIWKPSTRSLLVQLKGHVTWVKSIAFSPDGLQL 708
             G +  + F+  G  L SG  D   ++ W+P  R   V L   V+W K    +    QL
Sbjct: 230 EPGPVRSVLFNPDGCCLYSGCQDSLRVYGWEPE-RCFDVVL---VSWGKVADLAVCNDQL 285

Query: 709 ASAGYSHT 732
               +S +
Sbjct: 286 IGVAFSQS 293



 Score = 53.9 bits (128), Expect = 3e-07
 Identities = 31/71 (43%), Positives = 39/71 (54%), Gaps = 1/71 (1%)
 Frame = +1

Query: 154 GPVKFCRFSPDGRLFASTSSDCTIRLWDVAKVECLQVLKGHQRSVETVSFSPDSKQLASG 333
           GPV    F P+  L AS SSD TIR WD+ K + +  ++G    V +V F+PD   L SG
Sbjct: 190 GPVNVVEFHPNEYLLASGSSDRTIRFWDLEKFQVVSCIEGEPGPVRSVLFNPDGCCLYSG 249

Query: 334 GWDK-RVMLWE 363
             D  RV  WE
Sbjct: 250 CQDSLRVYGWE 260


>ref|XP_546100.2| PREDICTED: similar to TAF5-like RNA polymerase II p300/CBP-associated
            factor-associated factor 65 kDa subunit 5L (PCAF
            associated factor 65 beta) (PAF65-beta) [Canis
            familiaris]
          Length = 589

 Score =  127 bits (318), Expect = 3e-29
 Identities = 81/235 (34%), Positives = 112/235 (47%), Gaps = 3/235 (1%)
 Frame = +1

Query: 88   EQRGPRDAGGGESEILLPAPRG--GPVKFCRFSPDGRLFASTSSDCTIRLWDVAKVECLQ 261
            E+    D  G E +IL    RG  GPV   RF  D     S S D +IR WD+       
Sbjct: 323  EEDDEDDNAGTEMKIL----RGHCGPVYSTRFLADSSGLLSCSEDMSIRYWDLGSFTNTV 378

Query: 262  VLKGHQRSVETVSFSPDSKQLASGGWDKRVMLWEVQSGQVLRHLVGHRDSIQSSDFAPSS 441
            + +GH   V  +  SP S   ASG  D+   LW       LR   GH   +    F P+S
Sbjct: 379  LYQGHAYPVWDLDISPYSLYFASGSHDRTARLWSFDRTYPLRIYAGHLADVDCVKFHPNS 438

Query: 442  DCLATGSWDSTIRMWDLRGGTGAIFHQELEGHRGNISCLCFSAFG-LLASGSWDKTIHIW 618
            + LATGS D T+R+W  + G      +   GHRG +  L FS  G  LAS   D+ + +W
Sbjct: 439  NYLATGSTDKTVRLWSAQQGNSV---RLFTGHRGPVLSLAFSPNGKYLASAGEDQRLKLW 495

Query: 619  KPSTRSLLVQLKGHVTWVKSIAFSPDGLQLASAGYSHTVKVWDCNTGRCTDTLKG 783
              ++ +L  +L+GH   + S+ FSPD   +ASA   ++V+VWD     C+    G
Sbjct: 496  DLASGTLYKELRGHTDNITSLTFSPDSSLIASASMDNSVRVWDIRNTYCSTPADG 550



 Score =  101 bits (252), Expect = 1e-21
 Identities = 74/260 (28%), Positives = 112/260 (43%), Gaps = 33/260 (12%)
 Frame = +1

Query: 178  SPDGRLFASTSSDCTIRLW--------------DVAKVEC------------------LQ 261
            SPD +L A+   +  I+LW              DV+++                    ++
Sbjct: 277  SPDSKLLAAGFDNSCIKLWSLRSKKLKSEPHQVDVSRIHLACDILEEEDDEDDNAGTEMK 336

Query: 262  VLKGHQRSVETVSFSPDSKQLASGGWDKRVMLWEVQSGQVLRHLVGHRDSIQSSDFAPSS 441
            +L+GH   V +  F  DS  L S   D  +  W++ S        GH   +   D +P S
Sbjct: 337  ILRGHCGPVYSTRFLADSSGLLSCSEDMSIRYWDLGSFTNTVLYQGHAYPVWDLDISPYS 396

Query: 442  DCLATGSWDSTIRMWDLRGGTGAIFHQELEGHRGNISCLCFSA-FGLLASGSWDKTIHIW 618
               A+GS D T R+W          +    GH  ++ C+ F      LA+GS DKT+ +W
Sbjct: 397  LYFASGSHDRTARLWSFDRTYPLRIYA---GHLADVDCVKFHPNSNYLATGSTDKTVRLW 453

Query: 619  KPSTRSLLVQLKGHVTWVKSIAFSPDGLQLASAGYSHTVKVWDCNTGRCTDTLKGVLDVA 798
                 + +    GH   V S+AFSP+G  LASAG    +K+WD  +G     L+G  D  
Sbjct: 454  SAQQGNSVRLFTGHRGPVLSLAFSPNGKYLASAGEDQRLKLWDLASGTLYKELRGHTDNI 513

Query: 799  HSCAFTPDGKLLVSGTADQA 858
             S  F+PD  L+ S + D +
Sbjct: 514  TSLTFSPDSSLIASASMDNS 533


>ref|XP_532646.2| PREDICTED: similar to WD repeat domain 51B [Canis familiaris]
          Length = 833

 Score =  126 bits (317), Expect = 4e-29
 Identities = 68/198 (34%), Positives = 101/198 (51%), Gaps = 3/198 (1%)
 Frame = +1

Query: 268 KGHQRSVETVSFSPDSKQLASGGWDKRVMLWEVQSGQVLRHLVGHRDSIQSSDFAPSSDC 447
           KGH+ ++ +V FSP  KQLA+  WD  +MLW  +        VGH+D + S  F+P  + 
Sbjct: 370 KGHKAAITSVDFSPSGKQLATASWDTFLMLWNCKPQARAFRYVGHKDVVTSVQFSPLGNL 429

Query: 448 LATGSWDSTIRMW--DLRGGTGAIFHQELEGHRGNISCLCFSAFG-LLASGSWDKTIHIW 618
           LA+ S D T+R+W  D RG +      E + H   +  + FSA G  LA+ S DK+I +W
Sbjct: 430 LASASRDRTVRLWIPDKRGKS-----SEFKAHTAPVRSVDFSADGQFLATASEDKSIKVW 484

Query: 619 KPSTRSLLVQLKGHVTWVKSIAFSPDGLQLASAGYSHTVKVWDCNTGRCTDTLKGVLDVA 798
               +  L  L  H  WV+   FSPDG  + S     T+K+WD    +C +     +  A
Sbjct: 485 NMYRQRFLYSLYRHTHWVRCAKFSPDGRLIVSCSEDKTIKIWDTTNKQCVNNFSDSVGFA 544

Query: 799 HSCAFTPDGKLLVSGTAD 852
           +   F P+G  + S  +D
Sbjct: 545 NFVDFNPNGTCIASAGSD 562



 Score =  105 bits (261), Expect = 1e-22
 Identities = 68/227 (29%), Positives = 103/227 (45%), Gaps = 1/227 (0%)
 Frame = +1

Query: 175  FSPDGRLFASTSSDCTIRLWDVAKVECLQVLKGHQRSVETVSFSPDSKQLASGGWDKRVM 354
            FSP G+  A+ S D  + LW+           GH+  V +V FSP    LAS   D+ V 
Sbjct: 381  FSPSGKQLATASWDTFLMLWNCKPQARAFRYVGHKDVVTSVQFSPLGNLLASASRDRTVR 440

Query: 355  LWEVQSGQVLRHLVGHRDSIQSSDFAPSSDCLATGSWDSTIRMWDLRGGTGAIFHQELEG 534
            LW             H   ++S DF+     LAT S D +I++W++       F   L  
Sbjct: 441  LWIPDKRGKSSEFKAHTAPVRSVDFSADGQFLATASEDKSIKVWNMYRQR---FLYSLYR 497

Query: 535  HRGNISCLCFSAFG-LLASGSWDKTIHIWKPSTRSLLVQLKGHVTWVKSIAFSPDGLQLA 711
            H   + C  FS  G L+ S S DKTI IW  + +  +      V +   + F+P+G  +A
Sbjct: 498  HTHWVRCAKFSPDGRLIVSCSEDKTIKIWDTTNKQCVNNFSDSVGFANFVDFNPNGTCIA 557

Query: 712  SAGYSHTVKVWDCNTGRCTDTLKGVLDVAHSCAFTPDGKLLVSGTAD 852
            SAG  HTVK+WD    +     +      +  +F P G  +++ ++D
Sbjct: 558  SAGSDHTVKIWDIRVNKLLQHYQVHSGGVNCVSFHPSGNYIITASSD 604



 Score =  102 bits (254), Expect = 7e-22
 Identities = 70/228 (30%), Positives = 104/228 (45%), Gaps = 1/228 (0%)
 Frame = +1

Query: 172  RFSPDGRLFASTSSDCTIRLWDVAKVECLQVLKGHQRSVETVSFSPDSKQLASGGWDKRV 351
            +FSP G L AS S D T+RLW   K       K H   V +V FS D + LA+   DK +
Sbjct: 422  QFSPLGNLLASASRDRTVRLWIPDKRGKSSEFKAHTAPVRSVDFSADGQFLATASEDKSI 481

Query: 352  MLWEVQSGQVLRHLVGHRDSIQSSDFAPSSDCLATGSWDSTIRMWDLRGGTGAIFHQELE 531
             +W +   + L  L  H   ++ + F+P    + + S D TI++WD    T         
Sbjct: 482  KVWNMYRQRFLYSLYRHTHWVRCAKFSPDGRLIVSCSEDKTIKIWDT---TNKQCVNNFS 538

Query: 532  GHRGNISCLCFSAFG-LLASGSWDKTIHIWKPSTRSLLVQLKGHVTWVKSIAFSPDGLQL 708
               G  + + F+  G  +AS   D T+ IW      LL   + H   V  ++F P G  +
Sbjct: 539  DSVGFANFVDFNPNGTCIASAGSDHTVKIWDIRVNKLLQHYQVHSGGVNCVSFHPSGNYI 598

Query: 709  ASAGYSHTVKVWDCNTGRCTDTLKGVLDVAHSCAFTPDGKLLVSGTAD 852
             +A    T+K+ D   GR   TL+G      + +F+  G+L  SG AD
Sbjct: 599  ITASSDGTLKILDLLEGRLIYTLQGHTGPVFTVSFSKGGELFSSGGAD 646



 Score = 99.0 bits (245), Expect = 8e-21
 Identities = 62/218 (28%), Positives = 101/218 (46%), Gaps = 3/218 (1%)
 Frame = +1

Query: 157  PVKFCRFSPDGRLFASTSSDCTIRLWDVAKVECLQVLKGHQRSVETVSFSPDSKQLASGG 336
            PV+   FS DG+  A+ S D +I++W++ +   L  L  H   V    FSPD + + S  
Sbjct: 459  PVRSVDFSADGQFLATASEDKSIKVWNMYRQRFLYSLYRHTHWVRCAKFSPDGRLIVSCS 518

Query: 337  WDKRVMLWEVQSGQVLRHLVGHRDSIQSSDFAPSSDCLATGSWDSTIRMWDLRGGTGAIF 516
             DK + +W+  + Q + +           DF P+  C+A+   D T+++WD+R       
Sbjct: 519  EDKTIKIWDTTNKQCVNNFSDSVGFANFVDFNPNGTCIASAGSDHTVKIWDIRVNK---L 575

Query: 517  HQELEGHRGNISCLCFSAFG-LLASGSWDKTIHIWKPSTRSLLVQLKGHVTWVKSIAFSP 693
             Q  + H G ++C+ F   G  + + S D T+ I       L+  L+GH   V +++FS 
Sbjct: 576  LQHYQVHSGGVNCVSFHPSGNYIITASSDGTLKILDLLEGRLIYTLQGHTGPVFTVSFSK 635

Query: 694  DGLQLASAGYSHTVKVWDCNTG--RCTDTLKGVLDVAH 801
             G   +S G    V +W  N     C D +K  L   H
Sbjct: 636  GGELFSSGGADTQVLLWRTNFDYLNCKDMIKRNLKRLH 673



 Score = 97.8 bits (242), Expect = 2e-20
 Identities = 56/158 (35%), Positives = 85/158 (53%), Gaps = 1/158 (0%)
 Frame = +1

Query: 385 RHLVGHRDSIQSSDFAPSSDCLATGSWDSTIRMWDLRGGTGAIFHQELEGHRGNISCLCF 564
           R+  GH+ +I S DF+PS   LAT SWD+ + +W+ +    A       GH+  ++ + F
Sbjct: 367 RYFKGHKAAITSVDFSPSGKQLATASWDTFLMLWNCKPQARAF---RYVGHKDVVTSVQF 423

Query: 565 SAFG-LLASGSWDKTIHIWKPSTRSLLVQLKGHVTWVKSIAFSPDGLQLASAGYSHTVKV 741
           S  G LLAS S D+T+ +W P  R    + K H   V+S+ FS DG  LA+A    ++KV
Sbjct: 424 SPLGNLLASASRDRTVRLWIPDKRGKSSEFKAHTAPVRSVDFSADGQFLATASEDKSIKV 483

Query: 742 WDCNTGRCTDTLKGVLDVAHSCAFTPDGKLLVSGTADQ 855
           W+    R   +L           F+PDG+L+VS + D+
Sbjct: 484 WNMYRQRFLYSLYRHTHWVRCAKFSPDGRLIVSCSEDK 521



 Score = 62.0 bits (149), Expect = 1e-09
 Identities = 29/111 (26%), Positives = 55/111 (49%)
 Frame = +1

Query: 154 GPVKFCRFSPDGRLFASTSSDCTIRLWDVAKVECLQVLKGHQRSVETVSFSPDSKQLASG 333
           G   F  F+P+G   AS  SD T+++WD+   + LQ  + H   V  VSF P    + + 
Sbjct: 542 GFANFVDFNPNGTCIASAGSDHTVKIWDIRVNKLLQHYQVHSGGVNCVSFHPSGNYIITA 601

Query: 334 GWDKRVMLWEVQSGQVLRHLVGHRDSIQSSDFAPSSDCLATGSWDSTIRMW 486
             D  + + ++  G+++  L GH   + +  F+   +  ++G  D+ + +W
Sbjct: 602 SSDGTLKILDLLEGRLIYTLQGHTGPVFTVSFSKGGELFSSGGADTQVLLW 652


>ref|XP_537775.2| PREDICTED: similar to platelet-activating factor acetylhydrolase
           beta subunit isoform 1 [Canis familiaris]
          Length = 372

 Score =  125 bits (313), Expect = 1e-28
 Identities = 76/248 (30%), Positives = 114/248 (45%), Gaps = 21/248 (8%)
 Frame = +1

Query: 175 FSPDGRLFASTSSDCTIRLWDVAKVECLQVLKGHQRSVETVSFSPDSKQLASGGWDKRVM 354
           F   G+L AS S+D TI+LWD    EC++ + GH  +V +V+  P+   + S   DK + 
Sbjct: 120 FDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVAIMPNGDHIVSASRDKTIK 179

Query: 355 LWEVQSGQVLRHLVGHRDSIQSSDFAPSSDCLATGSWDSTIRMWDLRGGTGAIFHQELEG 534
           +WEVQ+G  ++   GHR+ ++          +A+ S D T+R+W +          EL  
Sbjct: 180 MWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVV---ATKECKAELRE 236

Query: 535 HRGNISCLCFS----------AFG-----------LLASGSWDKTIHIWKPSTRSLLVQL 651
           H   + C+ ++          A G            L SGS DKTI +W  ST   L+ L
Sbjct: 237 HEHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTL 296

Query: 652 KGHVTWVKSIAFSPDGLQLASAGYSHTVKVWDCNTGRCTDTLKGVLDVAHSCAFTPDGKL 831
            GH  WV+ + F   G  + S     T++VWD    RC  TL        S  F      
Sbjct: 297 VGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPY 356

Query: 832 LVSGTADQ 855
           +V+G+ DQ
Sbjct: 357 VVTGSVDQ 364



 Score =  113 bits (282), Expect = 4e-25
 Identities = 75/254 (29%), Positives = 120/254 (47%), Gaps = 21/254 (8%)
 Frame = +1

Query: 157 PVKFCRFSPDGRLFASTSSDCTIRLWDVAKVECLQVLKGHQRSVETVSFSPDSKQLASGG 336
           PV    F P   +  S S D TI++WD    +  + LKGH  SV+ +SF    K LAS  
Sbjct: 72  PVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCS 131

Query: 337 WDKRVMLWEVQSGQVLRHLVGHRDSIQSSDFAPSSDCLATGSWDSTIRMWDLRGGTGAIF 516
            D  + LW+ Q  + +R + GH  ++ S    P+ D + + S D TI+MW+++ G     
Sbjct: 132 ADMTIKLWDFQGFECIRTMHGHDHNVSSVAIMPNGDHIVSASRDKTIKMWEVQTGYCV-- 189

Query: 517 HQELEGHRGNISCLCFSAFG-LLASGSWDKTIHIWKPSTRSLLVQLKGHVTWVKSIAFSP 693
            +   GHR  +  +  +  G L+AS S D+T+ +W  +T+    +L+ H   V+ I+++P
Sbjct: 190 -KTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHEHVVECISWAP 248

Query: 694 D--------------------GLQLASAGYSHTVKVWDCNTGRCTDTLKGVLDVAHSCAF 813
           +                    G  L S     T+K+WD +TG C  TL G  +      F
Sbjct: 249 ESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLF 308

Query: 814 TPDGKLLVSGTADQ 855
              GK ++S   D+
Sbjct: 309 HSGGKFILSCADDK 322



 Score = 97.8 bits (242), Expect = 2e-20
 Identities = 59/187 (31%), Positives = 88/187 (47%), Gaps = 1/187 (0%)
 Frame = +1

Query: 265 LKGHQRSVETVSFSPDSKQLASGGWDKRVMLWEVQSGQVLRHLVGHRDSIQSSDFAPSSD 444
           L GH+  V  V F P    + S   D  + +W+ ++G   R L GH DS+Q   F  S  
Sbjct: 66  LSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGK 125

Query: 445 CLATGSWDSTIRMWDLRGGTGAIFHQELEGHRGNISCLCFSAFG-LLASGSWDKTIHIWK 621
            LA+ S D TI++WD +G       + + GH  N+S +     G  + S S DKTI +W+
Sbjct: 126 LLASCSADMTIKLWDFQGFECI---RTMHGHDHNVSSVAIMPNGDHIVSASRDKTIKMWE 182

Query: 622 PSTRSLLVQLKGHVTWVKSIAFSPDGLQLASAGYSHTVKVWDCNTGRCTDTLKGVLDVAH 801
             T   +    GH  WV+ +  + DG  +AS     TV+VW   T  C   L+    V  
Sbjct: 183 VQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHEHVVE 242

Query: 802 SCAFTPD 822
             ++ P+
Sbjct: 243 CISWAPE 249



 Score = 67.4 bits (163), Expect = 3e-11
 Identities = 34/103 (33%), Positives = 54/103 (52%)
 Frame = +1

Query: 187 GRLFASTSSDCTIRLWDVAKVECLQVLKGHQRSVETVSFSPDSKQLASGGWDKRVMLWEV 366
           G    S S D TI++WDV+   CL  L GH   V  V F    K + S   DK + +W+ 
Sbjct: 270 GPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDY 329

Query: 367 QSGQVLRHLVGHRDSIQSSDFAPSSDCLATGSWDSTIRMWDLR 495
           ++ + ++ L  H   + S DF  ++  + TGS D T+++W+ R
Sbjct: 330 KNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWECR 372


>ref|XP_854482.1| PREDICTED: similar to platelet-activating factor acetylhydrolase
           beta subunit isoform 2 [Canis familiaris]
          Length = 410

 Score =  125 bits (313), Expect = 1e-28
 Identities = 76/248 (30%), Positives = 114/248 (45%), Gaps = 21/248 (8%)
 Frame = +1

Query: 175 FSPDGRLFASTSSDCTIRLWDVAKVECLQVLKGHQRSVETVSFSPDSKQLASGGWDKRVM 354
           F   G+L AS S+D TI+LWD    EC++ + GH  +V +V+  P+   + S   DK + 
Sbjct: 158 FDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVAIMPNGDHIVSASRDKTIK 217

Query: 355 LWEVQSGQVLRHLVGHRDSIQSSDFAPSSDCLATGSWDSTIRMWDLRGGTGAIFHQELEG 534
           +WEVQ+G  ++   GHR+ ++          +A+ S D T+R+W +          EL  
Sbjct: 218 MWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVV---ATKECKAELRE 274

Query: 535 HRGNISCLCFS----------AFG-----------LLASGSWDKTIHIWKPSTRSLLVQL 651
           H   + C+ ++          A G            L SGS DKTI +W  ST   L+ L
Sbjct: 275 HEHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTL 334

Query: 652 KGHVTWVKSIAFSPDGLQLASAGYSHTVKVWDCNTGRCTDTLKGVLDVAHSCAFTPDGKL 831
            GH  WV+ + F   G  + S     T++VWD    RC  TL        S  F      
Sbjct: 335 VGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPY 394

Query: 832 LVSGTADQ 855
           +V+G+ DQ
Sbjct: 395 VVTGSVDQ 402



 Score =  113 bits (282), Expect = 4e-25
 Identities = 75/254 (29%), Positives = 120/254 (47%), Gaps = 21/254 (8%)
 Frame = +1

Query: 157 PVKFCRFSPDGRLFASTSSDCTIRLWDVAKVECLQVLKGHQRSVETVSFSPDSKQLASGG 336
           PV    F P   +  S S D TI++WD    +  + LKGH  SV+ +SF    K LAS  
Sbjct: 110 PVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCS 169

Query: 337 WDKRVMLWEVQSGQVLRHLVGHRDSIQSSDFAPSSDCLATGSWDSTIRMWDLRGGTGAIF 516
            D  + LW+ Q  + +R + GH  ++ S    P+ D + + S D TI+MW+++ G     
Sbjct: 170 ADMTIKLWDFQGFECIRTMHGHDHNVSSVAIMPNGDHIVSASRDKTIKMWEVQTGYCV-- 227

Query: 517 HQELEGHRGNISCLCFSAFG-LLASGSWDKTIHIWKPSTRSLLVQLKGHVTWVKSIAFSP 693
            +   GHR  +  +  +  G L+AS S D+T+ +W  +T+    +L+ H   V+ I+++P
Sbjct: 228 -KTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHEHVVECISWAP 286

Query: 694 D--------------------GLQLASAGYSHTVKVWDCNTGRCTDTLKGVLDVAHSCAF 813
           +                    G  L S     T+K+WD +TG C  TL G  +      F
Sbjct: 287 ESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLF 346

Query: 814 TPDGKLLVSGTADQ 855
              GK ++S   D+
Sbjct: 347 HSGGKFILSCADDK 360



 Score = 97.8 bits (242), Expect = 2e-20
 Identities = 59/187 (31%), Positives = 88/187 (47%), Gaps = 1/187 (0%)
 Frame = +1

Query: 265 LKGHQRSVETVSFSPDSKQLASGGWDKRVMLWEVQSGQVLRHLVGHRDSIQSSDFAPSSD 444
           L GH+  V  V F P    + S   D  + +W+ ++G   R L GH DS+Q   F  S  
Sbjct: 104 LSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGK 163

Query: 445 CLATGSWDSTIRMWDLRGGTGAIFHQELEGHRGNISCLCFSAFG-LLASGSWDKTIHIWK 621
            LA+ S D TI++WD +G       + + GH  N+S +     G  + S S DKTI +W+
Sbjct: 164 LLASCSADMTIKLWDFQGFECI---RTMHGHDHNVSSVAIMPNGDHIVSASRDKTIKMWE 220

Query: 622 PSTRSLLVQLKGHVTWVKSIAFSPDGLQLASAGYSHTVKVWDCNTGRCTDTLKGVLDVAH 801
             T   +    GH  WV+ +  + DG  +AS     TV+VW   T  C   L+    V  
Sbjct: 221 VQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHEHVVE 280

Query: 802 SCAFTPD 822
             ++ P+
Sbjct: 281 CISWAPE 287



 Score = 67.4 bits (163), Expect = 3e-11
 Identities = 34/103 (33%), Positives = 54/103 (52%)
 Frame = +1

Query: 187 GRLFASTSSDCTIRLWDVAKVECLQVLKGHQRSVETVSFSPDSKQLASGGWDKRVMLWEV 366
           G    S S D TI++WDV+   CL  L GH   V  V F    K + S   DK + +W+ 
Sbjct: 308 GPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDY 367

Query: 367 QSGQVLRHLVGHRDSIQSSDFAPSSDCLATGSWDSTIRMWDLR 495
           ++ + ++ L  H   + S DF  ++  + TGS D T+++W+ R
Sbjct: 368 KNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWECR 410


>ref|XP_868508.1| PREDICTED: similar to platelet-activating factor acetylhydrolase
           beta subunit isoform 3 [Canis familiaris]
          Length = 345

 Score =  125 bits (313), Expect = 1e-28
 Identities = 76/248 (30%), Positives = 114/248 (45%), Gaps = 21/248 (8%)
 Frame = +1

Query: 175 FSPDGRLFASTSSDCTIRLWDVAKVECLQVLKGHQRSVETVSFSPDSKQLASGGWDKRVM 354
           F   G+L AS S+D TI+LWD    EC++ + GH  +V +V+  P+   + S   DK + 
Sbjct: 93  FDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVAIMPNGDHIVSASRDKTIK 152

Query: 355 LWEVQSGQVLRHLVGHRDSIQSSDFAPSSDCLATGSWDSTIRMWDLRGGTGAIFHQELEG 534
           +WEVQ+G  ++   GHR+ ++          +A+ S D T+R+W +          EL  
Sbjct: 153 MWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVV---ATKECKAELRE 209

Query: 535 HRGNISCLCFS----------AFG-----------LLASGSWDKTIHIWKPSTRSLLVQL 651
           H   + C+ ++          A G            L SGS DKTI +W  ST   L+ L
Sbjct: 210 HEHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTL 269

Query: 652 KGHVTWVKSIAFSPDGLQLASAGYSHTVKVWDCNTGRCTDTLKGVLDVAHSCAFTPDGKL 831
            GH  WV+ + F   G  + S     T++VWD    RC  TL        S  F      
Sbjct: 270 VGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPY 329

Query: 832 LVSGTADQ 855
           +V+G+ DQ
Sbjct: 330 VVTGSVDQ 337



 Score =  113 bits (282), Expect = 4e-25
 Identities = 75/254 (29%), Positives = 120/254 (47%), Gaps = 21/254 (8%)
 Frame = +1

Query: 157 PVKFCRFSPDGRLFASTSSDCTIRLWDVAKVECLQVLKGHQRSVETVSFSPDSKQLASGG 336
           PV    F P   +  S S D TI++WD    +  + LKGH  SV+ +SF    K LAS  
Sbjct: 45  PVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCS 104

Query: 337 WDKRVMLWEVQSGQVLRHLVGHRDSIQSSDFAPSSDCLATGSWDSTIRMWDLRGGTGAIF 516
            D  + LW+ Q  + +R + GH  ++ S    P+ D + + S D TI+MW+++ G     
Sbjct: 105 ADMTIKLWDFQGFECIRTMHGHDHNVSSVAIMPNGDHIVSASRDKTIKMWEVQTGYCV-- 162

Query: 517 HQELEGHRGNISCLCFSAFG-LLASGSWDKTIHIWKPSTRSLLVQLKGHVTWVKSIAFSP 693
            +   GHR  +  +  +  G L+AS S D+T+ +W  +T+    +L+ H   V+ I+++P
Sbjct: 163 -KTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHEHVVECISWAP 221

Query: 694 D--------------------GLQLASAGYSHTVKVWDCNTGRCTDTLKGVLDVAHSCAF 813
           +                    G  L S     T+K+WD +TG C  TL G  +      F
Sbjct: 222 ESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLF 281

Query: 814 TPDGKLLVSGTADQ 855
              GK ++S   D+
Sbjct: 282 HSGGKFILSCADDK 295



 Score = 97.8 bits (242), Expect = 2e-20
 Identities = 59/187 (31%), Positives = 88/187 (47%), Gaps = 1/187 (0%)
 Frame = +1

Query: 265 LKGHQRSVETVSFSPDSKQLASGGWDKRVMLWEVQSGQVLRHLVGHRDSIQSSDFAPSSD 444
           L GH+  V  V F P    + S   D  + +W+ ++G   R L GH DS+Q   F  S  
Sbjct: 39  LSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGK 98

Query: 445 CLATGSWDSTIRMWDLRGGTGAIFHQELEGHRGNISCLCFSAFG-LLASGSWDKTIHIWK 621
            LA+ S D TI++WD +G       + + GH  N+S +     G  + S S DKTI +W+
Sbjct: 99  LLASCSADMTIKLWDFQGFECI---RTMHGHDHNVSSVAIMPNGDHIVSASRDKTIKMWE 155

Query: 622 PSTRSLLVQLKGHVTWVKSIAFSPDGLQLASAGYSHTVKVWDCNTGRCTDTLKGVLDVAH 801
             T   +    GH  WV+ +  + DG  +AS     TV+VW   T  C   L+    V  
Sbjct: 156 VQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHEHVVE 215

Query: 802 SCAFTPD 822
             ++ P+
Sbjct: 216 CISWAPE 222



 Score = 67.4 bits (163), Expect = 3e-11
 Identities = 34/103 (33%), Positives = 54/103 (52%)
 Frame = +1

Query: 187 GRLFASTSSDCTIRLWDVAKVECLQVLKGHQRSVETVSFSPDSKQLASGGWDKRVMLWEV 366
           G    S S D TI++WDV+   CL  L GH   V  V F    K + S   DK + +W+ 
Sbjct: 243 GPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDY 302

Query: 367 QSGQVLRHLVGHRDSIQSSDFAPSSDCLATGSWDSTIRMWDLR 495
           ++ + ++ L  H   + S DF  ++  + TGS D T+++W+ R
Sbjct: 303 KNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWECR 345


>ref|XP_868519.1| PREDICTED: similar to platelet-activating factor acetylhydrolase
           beta subunit isoform 5 [Canis familiaris]
          Length = 415

 Score =  123 bits (308), Expect = 4e-28
 Identities = 76/253 (30%), Positives = 114/253 (45%), Gaps = 26/253 (10%)
 Frame = +1

Query: 175 FSPDGRLFASTSSDCTIRLWDVAKVECLQVLKGHQRSVETVSFSPDSKQLASGGWDKRVM 354
           F   G+L AS S+D TI+LWD    EC++ + GH  +V +V+  P+   + S   DK + 
Sbjct: 158 FDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVAIMPNGDHIVSASRDKTIK 217

Query: 355 LWEVQSGQVLRHLVGHRDSIQSSDFAPSSDCLATGSWDSTIRMWDLRGGTGAIFHQELEG 534
           +WEVQ+G  ++   GHR+ ++          +A+ S D T+R+W +          EL  
Sbjct: 218 MWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVV---ATKECKAELRE 274

Query: 535 HRGNISCLCFS----------AFG----------------LLASGSWDKTIHIWKPSTRS 636
           H   + C+ ++          A G                 L SGS DKTI +W  ST  
Sbjct: 275 HEHVVECISWAPESSYSSISEATGSEEENPRTKKSGKPGPFLLSGSRDKTIKMWDVSTGM 334

Query: 637 LLVQLKGHVTWVKSIAFSPDGLQLASAGYSHTVKVWDCNTGRCTDTLKGVLDVAHSCAFT 816
            L+ L GH  WV+ + F   G  + S     T++VWD    RC  TL        S  F 
Sbjct: 335 CLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFH 394

Query: 817 PDGKLLVSGTADQ 855
                +V+G+ DQ
Sbjct: 395 KTAPYVVTGSVDQ 407



 Score =  111 bits (277), Expect = 2e-24
 Identities = 75/259 (28%), Positives = 120/259 (46%), Gaps = 26/259 (10%)
 Frame = +1

Query: 157 PVKFCRFSPDGRLFASTSSDCTIRLWDVAKVECLQVLKGHQRSVETVSFSPDSKQLASGG 336
           PV    F P   +  S S D TI++WD    +  + LKGH  SV+ +SF    K LAS  
Sbjct: 110 PVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCS 169

Query: 337 WDKRVMLWEVQSGQVLRHLVGHRDSIQSSDFAPSSDCLATGSWDSTIRMWDLRGGTGAIF 516
            D  + LW+ Q  + +R + GH  ++ S    P+ D + + S D TI+MW+++ G     
Sbjct: 170 ADMTIKLWDFQGFECIRTMHGHDHNVSSVAIMPNGDHIVSASRDKTIKMWEVQTGYCV-- 227

Query: 517 HQELEGHRGNISCLCFSAFG-LLASGSWDKTIHIWKPSTRSLLVQLKGHVTWVKSIAFSP 693
            +   GHR  +  +  +  G L+AS S D+T+ +W  +T+    +L+ H   V+ I+++P
Sbjct: 228 -KTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHEHVVECISWAP 286

Query: 694 D-------------------------GLQLASAGYSHTVKVWDCNTGRCTDTLKGVLDVA 798
           +                         G  L S     T+K+WD +TG C  TL G  +  
Sbjct: 287 ESSYSSISEATGSEEENPRTKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWV 346

Query: 799 HSCAFTPDGKLLVSGTADQ 855
               F   GK ++S   D+
Sbjct: 347 RGVLFHSGGKFILSCADDK 365



 Score = 97.8 bits (242), Expect = 2e-20
 Identities = 59/187 (31%), Positives = 88/187 (47%), Gaps = 1/187 (0%)
 Frame = +1

Query: 265 LKGHQRSVETVSFSPDSKQLASGGWDKRVMLWEVQSGQVLRHLVGHRDSIQSSDFAPSSD 444
           L GH+  V  V F P    + S   D  + +W+ ++G   R L GH DS+Q   F  S  
Sbjct: 104 LSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGK 163

Query: 445 CLATGSWDSTIRMWDLRGGTGAIFHQELEGHRGNISCLCFSAFG-LLASGSWDKTIHIWK 621
            LA+ S D TI++WD +G       + + GH  N+S +     G  + S S DKTI +W+
Sbjct: 164 LLASCSADMTIKLWDFQGFECI---RTMHGHDHNVSSVAIMPNGDHIVSASRDKTIKMWE 220

Query: 622 PSTRSLLVQLKGHVTWVKSIAFSPDGLQLASAGYSHTVKVWDCNTGRCTDTLKGVLDVAH 801
             T   +    GH  WV+ +  + DG  +AS     TV+VW   T  C   L+    V  
Sbjct: 221 VQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHEHVVE 280

Query: 802 SCAFTPD 822
             ++ P+
Sbjct: 281 CISWAPE 287



 Score = 80.9 bits (198), Expect = 2e-15
 Identities = 57/216 (26%), Positives = 91/216 (42%), Gaps = 26/216 (12%)
 Frame = +1

Query: 181 PDGRLFASTSSDCTIRLWDVAKVECLQVLKGHQRSVETVSFSPDSKQLASGGWDKRVMLW 360
           P+G    S S D TI++W+V    C++   GH+  V  V  + D   +AS   D+ V +W
Sbjct: 202 PNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVW 261

Query: 361 EVQSGQVLRHLVGHRDSIQSSDFAPSSDC-------------------------LATGSW 465
            V + +    L  H   ++   +AP S                           L +GS 
Sbjct: 262 VVATKECKAELREHEHVVECISWAPESSYSSISEATGSEEENPRTKKSGKPGPFLLSGSR 321

Query: 466 DSTIRMWDLRGGTGAIFHQELEGHRGNISCLCFSAFG-LLASGSWDKTIHIWKPSTRSLL 642
           D TI+MWD+  G   +    L GH   +  + F + G  + S + DKT+ +W    +  +
Sbjct: 322 DKTIKMWDVSTGMCLM---TLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCM 378

Query: 643 VQLKGHVTWVKSIAFSPDGLQLASAGYSHTVKVWDC 750
             L  H  +V S+ F      + +     TVKVW+C
Sbjct: 379 KTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWEC 414



 Score = 67.4 bits (163), Expect = 3e-11
 Identities = 34/103 (33%), Positives = 54/103 (52%)
 Frame = +1

Query: 187 GRLFASTSSDCTIRLWDVAKVECLQVLKGHQRSVETVSFSPDSKQLASGGWDKRVMLWEV 366
           G    S S D TI++WDV+   CL  L GH   V  V F    K + S   DK + +W+ 
Sbjct: 313 GPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDY 372

Query: 367 QSGQVLRHLVGHRDSIQSSDFAPSSDCLATGSWDSTIRMWDLR 495
           ++ + ++ L  H   + S DF  ++  + TGS D T+++W+ R
Sbjct: 373 KNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWECR 415


>ref|XP_850117.1| PREDICTED: similar to WD repeat domain 5 [Canis familiaris]
          Length = 334

 Score =  117 bits (292), Expect = 3e-26
 Identities = 72/237 (30%), Positives = 125/237 (52%), Gaps = 6/237 (2%)
 Frame = +1

Query: 160 VKFCRFSPDGRLFASTSSDCTIRLWDVAKVECLQVLKGHQRSVETVSFSPDSKQLASGGW 339
           V   +FSP+G   AS+S+D  I++W     +  + + GH+  +  V++S DS  L S   
Sbjct: 48  VSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASD 107

Query: 340 DKRVMLWEVQSGQVLRHLVGHRDSIQSSDFAPSSDCLATGSWDSTIRMWDLRGGTGAIFH 519
           DK + +W+V SG+ L+ L GH + +   +F P S+ + +GS+D ++R+WD++ G      
Sbjct: 108 DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCL--- 164

Query: 520 QELEGHRGNISCLCFSAFG-LLASGSWDKTI-HIWKPSTRSLLVQLKGHVTWVKSIAFSP 693
           + L  H   +S + F+  G L+ S S+D         ++R + + L      V  + FSP
Sbjct: 165 KTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCGKTGNAASRCMKLILDDDNPPVSFVKFSP 224

Query: 694 DGLQLASAGYSHTVKVWDCNTGRCTDTLKGVLDVAHSCAF----TPDGKLLVSGTAD 852
           +G  + +A   +T+K+WD + G+C  T  G  +  + C F       GK +VSG+ D
Sbjct: 225 NGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKY-CIFANFSVTGGKWIVSGSED 280



 Score = 99.0 bits (245), Expect = 8e-21
 Identities = 66/243 (27%), Positives = 109/243 (44%), Gaps = 51/243 (20%)
 Frame = +1

Query: 175 FSPDGRLFASTSSDCTIRLWDVAKVECLQVLKGHQRSVETVSFSPDSKQLASGGWDKRVM 354
           +S D  L  S S D T+++WDV+  +CL+ LKGH   V   +F+P S  + SG +D+ V 
Sbjct: 95  WSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVR 154

Query: 355 LWEVQSGQVLRHLVGHRDSIQSSDF----------------------------------- 429
           +W+V++G+ L+ L  H D + +  F                                   
Sbjct: 155 IWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCGKTGNAASRCMKLILDDDN 214

Query: 430 --------APSSDCLATGSWDSTIRMWDLRGGTGAIFHQELEGHRGNISCLC--FSAFG- 576
                   +P+   +   + D+T+++WD   G      +   GH+    C+   FS  G 
Sbjct: 215 PPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCL---KTYTGHKNEKYCIFANFSVTGG 271

Query: 577 -LLASGSWDKTIHIWKPSTRSLLVQLKGHVTWVKSIAFSPDGLQLASAGYSH--TVKVW- 744
             + SGS D  ++IW   T+ ++ +L+GH   V S A  P    +ASA   +  T+K+W 
Sbjct: 272 KWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWK 331

Query: 745 -DC 750
            DC
Sbjct: 332 SDC 334



 Score = 95.1 bits (235), Expect = 1e-19
 Identities = 59/201 (29%), Positives = 99/201 (49%), Gaps = 5/201 (2%)
 Frame = +1

Query: 265 LKGHQRSVETVSFSPDSKQLASGGWDKRVMLWEVQSGQVLRHLVGHRDSIQSSDFAPSSD 444
           L GH ++V +V FSP+ + LAS   DK + +W    G+  + + GH+  I    ++  S+
Sbjct: 41  LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 100

Query: 445 CLATGSWDSTIRMWDLRGGTGAIFHQELEGHRGNISCLCFS-AFGLLASGSWDKTIHIWK 621
            L + S D T+++WD+  G      + L+GH   + C  F+    L+ SGS+D+++ IW 
Sbjct: 101 LLVSASDDKTLKIWDVSSGKCL---KTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD 157

Query: 622 PSTRSLLVQLKGHVTWVKSIAFSPDGLQLASAGYSHTVKVWDCNTGRCTDTLKGVLD--- 792
             T   L  L  H   V ++ F+ DG  + S+ Y            RC   +K +LD   
Sbjct: 158 VKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCGKTGNAASRC---MKLILDDDN 214

Query: 793 -VAHSCAFTPDGKLLVSGTAD 852
                  F+P+GK +++ T D
Sbjct: 215 PPVSFVKFSPNGKYILAATLD 235



 Score = 75.1 bits (183), Expect = 1e-13
 Identities = 42/112 (37%), Positives = 58/112 (51%), Gaps = 1/112 (0%)
 Frame = +1

Query: 526 LEGHRGNISCLCFSAFG-LLASGSWDKTIHIWKPSTRSLLVQLKGHVTWVKSIAFSPDGL 702
           L GH   +S + FS  G  LAS S DK I IW          + GH   +  +A+S D  
Sbjct: 41  LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 100

Query: 703 QLASAGYSHTVKVWDCNTGRCTDTLKGVLDVAHSCAFTPDGKLLVSGTADQA 858
            L SA    T+K+WD ++G+C  TLKG  +    C F P   L+VSG+ D++
Sbjct: 101 LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDES 152



 Score = 73.6 bits (179), Expect = 4e-13
 Identities = 37/115 (32%), Positives = 67/115 (58%), Gaps = 5/115 (4%)
 Frame = +1

Query: 157 PVKFCRFSPDGRLFASTSSDCTIRLWDVAKVECLQVLKGHQRSVETV--SFS-PDSKQLA 327
           PV F +FSP+G+   + + D T++LWD +K +CL+   GH+     +  +FS    K + 
Sbjct: 216 PVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIV 275

Query: 328 SGGWDKRVMLWEVQSGQVLRHLVGHRDSIQSSDFAPSSDCLATGSW--DSTIRMW 486
           SG  D  V +W +Q+ ++++ L GH D + S+   P+ + +A+ +   D TI++W
Sbjct: 276 SGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 330


  Database: RefSeqCP
    Posted date:  Aug 1, 2006  9:25 PM
  Number of letters in database: 19,266,565
  Number of sequences in database:  33,732
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 56,763,130
Number of Sequences: 33732
Number of extensions: 1739041
Number of successful extensions: 10581
Number of sequences better than 1.0e-05: 10
Number of HSP's better than  0.0 without gapping: 5454
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8525
length of database: 19,266,565
effective HSP length: 105
effective length of database: 15,724,705
effective search space used: 4591613860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

Search to RefSeqMP

BLASTX 2.2.10 [Oct-19-2004]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20060611S-030165
         (1194 letters)

Database: RefSeqMP 
           45,328 sequences; 21,768,885 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_083963.1| hypothetical protein LOC76646 [Mus musculus]         367   e-105
Alignment   gi|NP_083081.2| katanin p80 (WD40-containing) subunit B 1 [Mus ...   138   1e-32
Alignment   gi|NP_796316.1| TAF5 RNA polymerase II, TATA box binding protei...   134   2e-31
Alignment   gi|NP_598727.1| TAF5-like RNA polymerase II, p300/CBP-associate...   131   1e-30
Alignment   gi|NP_081389.1| WD repeat domain 5B [Mus musculus]                   128   1e-29
Alignment   gi|NP_082016.1| WD repeat domain 51B [Mus musculus]                  127   3e-29
Alignment   gi|NP_038653.1| platelet-activating factor acetylhydrolase, iso...   125   1e-28
Alignment   gi|XP_987745.1| PREDICTED: similar to platelet-activating facto...   125   1e-28
Alignment   gi|NP_543124.1| WD repeat domain 5 [Mus musculus]                    122   6e-28
Alignment   gi|NP_663406.1| Notchless gene homolog [Mus musculus]                114   3e-25

>ref|NP_083963.1| hypothetical protein LOC76646 [Mus musculus]
          Length = 303

 Score =  367 bits (942), Expect(2) = e-105
 Identities = 173/232 (74%), Positives = 198/232 (85%)
 Frame = +1

Query: 154 GPVKFCRFSPDGRLFASTSSDCTIRLWDVAKVECLQVLKGHQRSVETVSFSPDSKQLASG 333
           GPVK C FSPDGRL AS+SSD +IRLWDVA+ +CL VLKGHQRSVETVSFSPDSKQLASG
Sbjct: 69  GPVKSCCFSPDGRLIASSSSDHSIRLWDVARSKCLHVLKGHQRSVETVSFSPDSKQLASG 128

Query: 334 GWDKRVMLWEVQSGQVLRHLVGHRDSIQSSDFAPSSDCLATGSWDSTIRMWDLRGGTGAI 513
           GWDKR ++WEVQSG+ +  LVGH DSIQSSDF+P+SD LATGSWDST+ +WDLR  T  +
Sbjct: 129 GWDKRAIVWEVQSGRRVHLLVGHCDSIQSSDFSPTSDSLATGSWDSTVHIWDLRASTPVV 188

Query: 514 FHQELEGHRGNISCLCFSAFGLLASGSWDKTIHIWKPSTRSLLVQLKGHVTWVKSIAFSP 693
            +  LEGH GNISCLC+SA GLLASGSWDKTI +WKP+T +L +QLKGH  WV S+AFSP
Sbjct: 189 SYHNLEGHTGNISCLCYSASGLLASGSWDKTICVWKPTTNNLPLQLKGHTIWVNSLAFSP 248

Query: 694 DGLQLASAGYSHTVKVWDCNTGRCTDTLKGVLDVAHSCAFTPDGKLLVSGTA 849
           D L+LASAGYS TVKVWDC TG+C +TLKG+LDVAH+C FTPDGKLLVSG A
Sbjct: 249 DELKLASAGYSRTVKVWDCLTGKCLETLKGMLDVAHACIFTPDGKLLVSGAA 300



 Score = 97.1 bits (240), Expect = 3e-20
 Identities = 63/201 (31%), Positives = 97/201 (48%), Gaps = 4/201 (1%)
 Frame = +1

Query: 274 HQRSVETVSFSPDSKQLASGGWDKRVMLWEVQSGQVLRHLVGHRDSIQSSDFAPSSDCLA 453
           H   V   +FSPD + L +   D  V +W  +SG++L  L GHR  ++S  F+P    +A
Sbjct: 25  HHGEVNCSAFSPDGRTLLTASDDGCVYVWGTKSGRLLWRLAGHRGPVKSCCFSPDGRLIA 84

Query: 454 TGSWDSTIRMWDLRGGTGAIFHQELEGHRGNISCLCFSAFG-LLASGSWDKTIHIWKPST 630
           + S D +IR+WD+        H  L+GH+ ++  + FS     LASG WDK   +W+  +
Sbjct: 85  SSSSDHSIRLWDV--ARSKCLH-VLKGHQRSVETVSFSPDSKQLASGGWDKRAIVWEVQS 141

Query: 631 RSLLVQLKGHVTWVKSIAFSPDGLQLASAGYSHTVKVWDCNTGR---CTDTLKGVLDVAH 801
              +  L GH   ++S  FSP    LA+  +  TV +WD            L+G      
Sbjct: 142 GRRVHLLVGHCDSIQSSDFSPTSDSLATGSWDSTVHIWDLRASTPVVSYHNLEGHTGNIS 201

Query: 802 SCAFTPDGKLLVSGTADQARC 864
              ++  G LL SG+ D+  C
Sbjct: 202 CLCYSASG-LLASGSWDKTIC 221



 Score = 92.0 bits (227), Expect = 1e-18
 Identities = 58/166 (34%), Positives = 79/166 (47%), Gaps = 1/166 (0%)
 Frame = +1

Query: 400 HRDSIQSSDFAPSSDCLATGSWDSTIRMWDLRGGTGAIFHQELEGHRGNISCLCFSAFG- 576
           H   +  S F+P    L T S D  + +W  + G        L GHRG +   CFS  G 
Sbjct: 25  HHGEVNCSAFSPDGRTLLTASDDGCVYVWGTKSGR---LLWRLAGHRGPVKSCCFSPDGR 81

Query: 577 LLASGSWDKTIHIWKPSTRSLLVQLKGHVTWVKSIAFSPDGLQLASAGYSHTVKVWDCNT 756
           L+AS S D +I +W  +    L  LKGH   V++++FSPD  QLAS G+     VW+  +
Sbjct: 82  LIASSSSDHSIRLWDVARSKCLHVLKGHQRSVETVSFSPDSKQLASGGWDKRAIVWEVQS 141

Query: 757 GRCTDTLKGVLDVAHSCAFTPDGKLLVSGTADQARCQVHCKSPRAA 894
           GR    L G  D   S  F+P    L +G+ D     VH    RA+
Sbjct: 142 GRRVHLLVGHCDSIQSSDFSPTSDSLATGSWDST---VHIWDLRAS 184



 Score = 33.1 bits (74), Expect(2) = e-105
 Identities = 15/23 (65%), Positives = 17/23 (73%)
 Frame = +2

Query: 86  MNSGAPGTLAVGRVKFYCRHRGE 154
           MN  AP  LAVGRV+FY +H GE
Sbjct: 6   MNIRAPTRLAVGRVRFYGQHHGE 28


>ref|NP_083081.2| katanin p80 (WD40-containing) subunit B 1 [Mus musculus]
          Length = 658

 Score =  138 bits (347), Expect = 1e-32
 Identities = 81/262 (30%), Positives = 129/262 (49%), Gaps = 2/262 (0%)
 Frame = +1

Query: 187 GRLFASTSSDCTIRLWDVAKVECLQVLKGHQRSVETVSFSPDSKQLASGGWDKRVMLWEV 366
           GRL A+   DC + LW + K  C+  L GH   VE+V  +   + + +G     + +W++
Sbjct: 33  GRLLATGGDDCRVNLWSINKPNCIMSLTGHTSPVESVRLNTPEELIVAGSQSGSIRVWDL 92

Query: 367 QSGQVLRHLVGHRDSIQSSDFAPSSDCLATGSWDSTIRMWDLRGGTGAIFHQELEGHRGN 546
           ++ ++LR L+GH+ +I S DF P  + +A+GS D+ I++WD+R   G +F     GH   
Sbjct: 93  EAAKILRTLMGHKANICSLDFHPYGEFVASGSQDTNIKLWDIR-RKGCVF--RYRGHSQA 149

Query: 547 ISCLCFSAFG-LLASGSWDKTIHIWKPSTRSLLVQLKGHVTWVKSIAFSPDGLQLASAGY 723
           + CL FS  G  LAS + D T+ +W  +   ++ +  GH   V  + F P+   LAS   
Sbjct: 150 VRCLRFSPDGKWLASAADDHTVKLWDLTAGKMMSEFPGHTGPVNVVEFHPNEYLLASGSS 209

Query: 724 SHTVKVWDCNTGRCTDTLKGVLDVAHSCAFTPDGKLLVSGTADQARCQVHCKSPRAAQDN 903
             T++ WD    +    ++G      S  F PDG  L SG  D  R  V+   P    D 
Sbjct: 210 DRTIRFWDLEKFQVVSCIEGEPGPVRSVLFNPDGCCLYSGCQDSLR--VYGWEPERCFDV 267

Query: 904 I-TRMGQIPVGRDCHSPLPGAA 966
           +    G++     C+  L G A
Sbjct: 268 VLVNWGKVADLAICNDQLIGVA 289



 Score =  105 bits (261), Expect = 1e-22
 Identities = 62/208 (29%), Positives = 107/208 (51%), Gaps = 1/208 (0%)
 Frame = +1

Query: 157 PVKFCRFSPDGRLFASTSSDCTIRLWDVAKVECLQVLKGHQRSVETVSFSPDSKQLASGG 336
           PV+  R +    L  + S   +IR+WD+   + L+ L GH+ ++ ++ F P  + +ASG 
Sbjct: 65  PVESVRLNTPEELIVAGSQSGSIRVWDLEAAKILRTLMGHKANICSLDFHPYGEFVASGS 124

Query: 337 WDKRVMLWEVQSGQVLRHLVGHRDSIQSSDFAPSSDCLATGSWDSTIRMWDLRGGTGAIF 516
            D  + LW+++    +    GH  +++   F+P    LA+ + D T+++WDL  G     
Sbjct: 125 QDTNIKLWDIRRKGCVFRYRGHSQAVRCLRFSPDGKWLASAADDHTVKLWDLTAGK---M 181

Query: 517 HQELEGHRGNISCLCFSAFG-LLASGSWDKTIHIWKPSTRSLLVQLKGHVTWVKSIAFSP 693
             E  GH G ++ + F     LLASGS D+TI  W      ++  ++G    V+S+ F+P
Sbjct: 182 MSEFPGHTGPVNVVEFHPNEYLLASGSSDRTIRFWDLEKFQVVSCIEGEPGPVRSVLFNP 241

Query: 694 DGLQLASAGYSHTVKVWDCNTGRCTDTL 777
           DG  L S G   +++V+     RC D +
Sbjct: 242 DGCCLYS-GCQDSLRVYGWEPERCFDVV 268



 Score = 53.9 bits (128), Expect = 3e-07
 Identities = 31/71 (43%), Positives = 39/71 (54%), Gaps = 1/71 (1%)
 Frame = +1

Query: 154 GPVKFCRFSPDGRLFASTSSDCTIRLWDVAKVECLQVLKGHQRSVETVSFSPDSKQLASG 333
           GPV    F P+  L AS SSD TIR WD+ K + +  ++G    V +V F+PD   L SG
Sbjct: 190 GPVNVVEFHPNEYLLASGSSDRTIRFWDLEKFQVVSCIEGEPGPVRSVLFNPDGCCLYSG 249

Query: 334 GWDK-RVMLWE 363
             D  RV  WE
Sbjct: 250 CQDSLRVYGWE 260


>ref|NP_796316.1| TAF5 RNA polymerase II, TATA box binding protein (TBP)-associated
            factor, 100kDa [Mus musculus]
          Length = 801

 Score =  134 bits (337), Expect = 2e-31
 Identities = 82/210 (39%), Positives = 107/210 (50%), Gaps = 2/210 (0%)
 Frame = +1

Query: 124  SEILLPAPRGGPVKFCRFSPDGRLFASTSSDCTIRLWDVAKVECLQVLKGHQRSVETVSF 303
            SE+ +     GPV    FSPD     S+S D T+RLW +    CL   KGH   V    F
Sbjct: 535  SELKILYGHSGPVYGASFSPDRNYLLSSSEDGTVRLWSLQTFTCLVGYKGHNYPVWDTQF 594

Query: 304  SPDSKQLASGGWDKRVMLWEVQSGQVLRHLVGHRDSIQSSDFAPSSDCLATGSWDSTIRM 483
            SP      SGG D+   LW     Q LR   GH   +  + F P+S+ +ATGS D T+R+
Sbjct: 595  SPYGYYFVSGGHDRVARLWATDHYQPLRIFAGHLADVNCTRFHPNSNYVATGSADRTVRL 654

Query: 484  WD-LRGGTGAIFHQELEGHRGNISCLCFSAFG-LLASGSWDKTIHIWKPSTRSLLVQLKG 657
            WD L G    IF     GH+G I  L FS  G  LA+G+ D  + +W      ++ +LKG
Sbjct: 655  WDVLNGNCVRIF----TGHKGPIHSLTFSPNGRFLATGATDGRVLLWDIGHGLMVGELKG 710

Query: 658  HVTWVKSIAFSPDGLQLASAGYSHTVKVWD 747
            H   V S+ FS DG  LAS    +TV++WD
Sbjct: 711  HTDTVCSLRFSRDGEILASGSMDNTVRLWD 740



 Score =  101 bits (252), Expect = 1e-21
 Identities = 69/228 (30%), Positives = 99/228 (43%), Gaps = 5/228 (2%)
 Frame = +1

Query: 184  DGRLFASTSSDCTIRLWDVAKVECLQVLKGHQRSVETVSFSPDSKQLASGGWDKRVMLWE 363
            D  L    S D   R+ D      L++L GH   V   SFSPD   L S   D  V LW 
Sbjct: 513  DLSLIDKESDDVLERIMDEKTASELKILYGHSGPVYGASFSPDRNYLLSSSEDGTVRLWS 572

Query: 364  VQSGQVLRHLVGHRDSIQSSDFAPSSDCLATGSWDSTIRMWDLRGGTGAIFHQE----LE 531
            +Q+   L    GH   +  + F+P      +G  D   R+W       A  H +      
Sbjct: 573  LQTFTCLVGYKGHNYPVWDTQFSPYGYYFVSGGHDRVARLW-------ATDHYQPLRIFA 625

Query: 532  GHRGNISCLCFSA-FGLLASGSWDKTIHIWKPSTRSLLVQLKGHVTWVKSIAFSPDGLQL 708
            GH  +++C  F      +A+GS D+T+ +W     + +    GH   + S+ FSP+G  L
Sbjct: 626  GHLADVNCTRFHPNSNYVATGSADRTVRLWDVLNGNCVRIFTGHKGPIHSLTFSPNGRFL 685

Query: 709  ASAGYSHTVKVWDCNTGRCTDTLKGVLDVAHSCAFTPDGKLLVSGTAD 852
            A+      V +WD   G     LKG  D   S  F+ DG++L SG+ D
Sbjct: 686  ATGATDGRVLLWDIGHGLMVGELKGHTDTVCSLRFSRDGEILASGSMD 733



 Score = 53.9 bits (128), Expect = 3e-07
 Identities = 58/243 (23%), Positives = 83/243 (34%), Gaps = 43/243 (17%)
 Frame = +1

Query: 253  CLQVLKGHQRSVETVSFSPDSKQLASGGWDKRVMLWEVQSGQVLRHLVGHRDSIQSSDFA 432
            C        + +  V  + DS  +A G  D  V +W V   ++       R   Q+SD +
Sbjct: 463  CFYTFLNAYQGLTAVDVTDDSSLIAGGFADSTVRVWSVTPKKL-------RSVKQASDLS 515

Query: 433  PSSDCLATGSWDSTIRMWDLRGGTGAIFHQELEGHRGNISCLCFSAF-GLLASGSWDKTI 609
                 +   S D   R+ D +  +     + L GH G +    FS     L S S D T+
Sbjct: 516  ----LIDKESDDVLERIMDEKTASEL---KILYGHSGPVYGASFSPDRNYLLSSSEDGTV 568

Query: 610  HIWKPSTRSLLVQLKGHVTWVKSIAFSPDGLQLASAGY---------------------- 723
             +W   T + LV  KGH   V    FSP G    S G+                      
Sbjct: 569  RLWSLQTFTCLVGYKGHNYPVWDTQFSPYGYYFVSGGHDRVARLWATDHYQPLRIFAGHL 628

Query: 724  --------------------SHTVKVWDCNTGRCTDTLKGVLDVAHSCAFTPDGKLLVSG 843
                                  TV++WD   G C     G     HS  F+P+G+ L +G
Sbjct: 629  ADVNCTRFHPNSNYVATGSADRTVRLWDVLNGNCVRIFTGHKGPIHSLTFSPNGRFLATG 688

Query: 844  TAD 852
              D
Sbjct: 689  ATD 691


>ref|NP_598727.1| TAF5-like RNA polymerase II, p300/CBP-associated factor
            (PCAF)-associated factor [Mus musculus]
          Length = 589

 Score =  131 bits (330), Expect = 1e-30
 Identities = 92/270 (34%), Positives = 124/270 (45%), Gaps = 14/270 (5%)
 Frame = +1

Query: 88   EQRGPRDAGGGESEILLPAPRG--GPVKFCRFSPDGRLFASTSSDCTIRLWDVAKVECLQ 261
            E+    D  G E +IL    RG  GPV   RF  D     S S D +IR WD+       
Sbjct: 323  EEENEEDNTGTEMKIL----RGHCGPVYSTRFLADSSGLLSCSEDMSIRYWDLGSFTNTV 378

Query: 262  VLKGHQRSVETVSFSPDSKQLASGGWDKRVMLWEVQSGQVLRHLVGHRDSIQSSDFAPSS 441
            + +GH   V  V  SP S   ASG  D+   LW       LR   GH   +    F P+S
Sbjct: 379  LYQGHAYPVWDVDISPFSLYFASGSHDRTARLWSFDRTYPLRIYAGHLADVDCVKFHPNS 438

Query: 442  DCLATGSWDSTIRMWDLRGGTGAIFHQELEGHRGNISCLCFSAFG-LLASGSWDKTIHIW 618
            + LATGS D T+R+W  + G      +   GHRG +  L FS  G  LAS   D+ + +W
Sbjct: 439  NYLATGSTDKTVRLWSAQQGNSV---RLFTGHRGPVLSLSFSPNGKYLASAGEDQRLKLW 495

Query: 619  KPSTRSLLVQLKGHVTWVKSIAFSPDGLQLASAGYSHTVKVWD-----CNT------GRC 765
              ++ +L  +L+GH   + S+AFSPD   +ASA   ++V+VWD     CNT      G  
Sbjct: 496  DLASGTLFKELRGHTDSITSLAFSPDSGLIASASMDNSVRVWDIRSTCCNTPADGSSGEL 555

Query: 766  TDTLKGVLDVAHSCAFTPDGKLLVSGTADQ 855
                 G +    S  F     LLV+G   +
Sbjct: 556  VGVYTGQMSNVLSVQFMACNLLLVTGITQE 585



 Score = 99.8 bits (247), Expect = 5e-21
 Identities = 64/202 (31%), Positives = 96/202 (47%), Gaps = 1/202 (0%)
 Frame = +1

Query: 256 LQVLKGHQRSVETVSFSPDSKQLASGGWDKRVMLWEVQSGQVLRHLVGHRDSIQSSDFAP 435
           +++L+GH   V +  F  DS  L S   D  +  W++ S        GH   +   D +P
Sbjct: 335 MKILRGHCGPVYSTRFLADSSGLLSCSEDMSIRYWDLGSFTNTVLYQGHAYPVWDVDISP 394

Query: 436 SSDCLATGSWDSTIRMWDLRGGTGAIFHQELEGHRGNISCLCFSA-FGLLASGSWDKTIH 612
            S   A+GS D T R+W          +    GH  ++ C+ F      LA+GS DKT+ 
Sbjct: 395 FSLYFASGSHDRTARLWSFDRTYPLRIYA---GHLADVDCVKFHPNSNYLATGSTDKTVR 451

Query: 613 IWKPSTRSLLVQLKGHVTWVKSIAFSPDGLQLASAGYSHTVKVWDCNTGRCTDTLKGVLD 792
           +W     + +    GH   V S++FSP+G  LASAG    +K+WD  +G     L+G  D
Sbjct: 452 LWSAQQGNSVRLFTGHRGPVLSLSFSPNGKYLASAGEDQRLKLWDLASGTLFKELRGHTD 511

Query: 793 VAHSCAFTPDGKLLVSGTADQA 858
              S AF+PD  L+ S + D +
Sbjct: 512 SITSLAFSPDSGLIASASMDNS 533


>ref|NP_081389.1| WD repeat domain 5B [Mus musculus]
          Length = 328

 Score =  128 bits (321), Expect = 1e-29
 Identities = 78/245 (31%), Positives = 133/245 (54%), Gaps = 8/245 (3%)
 Frame = +1

Query: 142 APRGGPVKFCRFSPDGRLFASTSSDCTIRLWDVAKVECLQVLKGHQRSVETVSFSPDSKQ 321
           A     +   +FSP+G   AS+++D  I +W      C + L GH   +  V++S DS +
Sbjct: 36  AGHSAAISSVKFSPNGEWLASSAADALIIIWGAYDGNCKKTLYGHSLEISDVAWSSDSSR 95

Query: 322 LASGGWDKRVMLWEVQSGQVLRHLVGHRDSIQSSDFAPSSDCLATGSWDSTIRMWDLRGG 501
           L S   DK + +W+++SG+ L+ L GH D +   DF P S+ + +GS+D ++++W+++ G
Sbjct: 96  LVSASDDKTLKVWDMRSGKCLKTLKGHSDFVFCCDFNPPSNLIVSGSFDESVKIWEVKTG 155

Query: 502 TGAIFHQELEGHRGNISCLCFSAFG-LLASGSWDKTIHIWKPST----RSLLVQLKGHVT 666
                 + L  H   IS + F+  G L+ SGS+D    IW  ++    R+L  +    V+
Sbjct: 156 KCL---KTLSAHSDPISAVNFNCNGSLIVSGSYDGLCRIWDAASGQCLRTLADEGNPPVS 212

Query: 667 WVKSIAFSPDGLQLASAGYSHTVKVWDCNTGRCTDTLKGVLDVAHS--CAFTPDG-KLLV 837
           +VK   FSP+G  + +A   +T+K+WD + GRC  T  G  +  +    +F+  G K +V
Sbjct: 213 FVK---FSPNGKYILTATLDNTLKLWDYSRGRCLKTYTGHKNEKYCLFASFSVTGRKWVV 269

Query: 838 SGTAD 852
           SG+ D
Sbjct: 270 SGSED 274



 Score =  107 bits (267), Expect = 2e-23
 Identities = 65/201 (32%), Positives = 108/201 (53%), Gaps = 5/201 (2%)
 Frame = +1

Query: 265 LKGHQRSVETVSFSPDSKQLASGGWDKRVMLWEVQSGQVLRHLVGHRDSIQSSDFAPSSD 444
           L GH  ++ +V FSP+ + LAS   D  +++W    G   + L GH  S++ SD A SSD
Sbjct: 35  LAGHSAAISSVKFSPNGEWLASSAADALIIIWGAYDGNCKKTLYGH--SLEISDVAWSSD 92

Query: 445 C--LATGSWDSTIRMWDLRGGTGAIFHQELEGHRGNISCLCFS-AFGLLASGSWDKTIHI 615
              L + S D T+++WD+R G      + L+GH   + C  F+    L+ SGS+D+++ I
Sbjct: 93  SSRLVSASDDKTLKVWDMRSGKCL---KTLKGHSDFVFCCDFNPPSNLIVSGSFDESVKI 149

Query: 616 WKPSTRSLLVQLKGHVTWVKSIAFSPDGLQLASAGYSHTVKVWDCNTGRCTDTL--KGVL 789
           W+  T   L  L  H   + ++ F+ +G  + S  Y    ++WD  +G+C  TL  +G  
Sbjct: 150 WEVKTGKCLKTLSAHSDPISAVNFNCNGSLIVSGSYDGLCRIWDAASGQCLRTLADEGNP 209

Query: 790 DVAHSCAFTPDGKLLVSGTAD 852
            V+    F+P+GK +++ T D
Sbjct: 210 PVSF-VKFSPNGKYILTATLD 229



 Score =  103 bits (257), Expect = 4e-22
 Identities = 62/204 (30%), Positives = 104/204 (50%), Gaps = 10/204 (4%)
 Frame = +1

Query: 169 CRFSPDGRLFASTSSDCTIRLWDVAKVECLQVLKGHQRSVETVSFSPDSKQLASGGWDKR 348
           C F+P   L  S S D ++++W+V   +CL+ L  H   +  V+F+ +   + SG +D  
Sbjct: 129 CDFNPPSNLIVSGSFDESVKIWEVKTGKCLKTLSAHSDPISAVNFNCNGSLIVSGSYDGL 188

Query: 349 VMLWEVQSGQVLRHLVGHRDS-IQSSDFAPSSDCLATGSWDSTIRMWDLRGGTGAIFHQE 525
             +W+  SGQ LR L    +  +    F+P+   + T + D+T+++WD   G      + 
Sbjct: 189 CRIWDAASGQCLRTLADEGNPPVSFVKFSPNGKYILTATLDNTLKLWDYSRGRCL---KT 245

Query: 526 LEGHRGNISCLCFSAFGL-----LASGSWDKTIHIWKPSTRSLLVQLKGHVTWVKSIAFS 690
             GH+    CL F++F +     + SGS D  ++IW   T+ ++ +L+GH   V S A  
Sbjct: 246 YTGHKNEKYCL-FASFSVTGRKWVVSGSEDNMVYIWNLQTKEIVQRLQGHTDVVISAACH 304

Query: 691 PDGLQLASAGYSH--TVKVW--DC 750
           P    +ASA   +  T+KVW  DC
Sbjct: 305 PTKNIIASAALENDKTIKVWSSDC 328



 Score = 75.1 bits (183), Expect = 1e-13
 Identities = 44/112 (39%), Positives = 58/112 (51%), Gaps = 1/112 (0%)
 Frame = +1

Query: 526 LEGHRGNISCLCFSAFG-LLASGSWDKTIHIWKPSTRSLLVQLKGHVTWVKSIAFSPDGL 702
           L GH   IS + FS  G  LAS + D  I IW     +    L GH   +  +A+S D  
Sbjct: 35  LAGHSAAISSVKFSPNGEWLASSAADALIIIWGAYDGNCKKTLYGHSLEISDVAWSSDSS 94

Query: 703 QLASAGYSHTVKVWDCNTGRCTDTLKGVLDVAHSCAFTPDGKLLVSGTADQA 858
           +L SA    T+KVWD  +G+C  TLKG  D    C F P   L+VSG+ D++
Sbjct: 95  RLVSASDDKTLKVWDMRSGKCLKTLKGHSDFVFCCDFNPPSNLIVSGSFDES 146



 Score = 74.3 bits (181), Expect = 2e-13
 Identities = 41/132 (31%), Positives = 71/132 (53%), Gaps = 5/132 (3%)
 Frame = +1

Query: 106 DAGGGESEILLPAPRGGPVKFCRFSPDGRLFASTSSDCTIRLWDVAKVECLQVLKGHQRS 285
           DA  G+    L      PV F +FSP+G+   + + D T++LWD ++  CL+   GH+  
Sbjct: 193 DAASGQCLRTLADEGNPPVSFVKFSPNGKYILTATLDNTLKLWDYSRGRCLKTYTGHKNE 252

Query: 286 VETV--SFS-PDSKQLASGGWDKRVMLWEVQSGQVLRHLVGHRDSIQSSDFAPSSDCLAT 456
              +  SFS    K + SG  D  V +W +Q+ ++++ L GH D + S+   P+ + +A+
Sbjct: 253 KYCLFASFSVTGRKWVVSGSEDNMVYIWNLQTKEIVQRLQGHTDVVISAACHPTKNIIAS 312

Query: 457 GSW--DSTIRMW 486
            +   D TI++W
Sbjct: 313 AALENDKTIKVW 324


>ref|NP_082016.1| WD repeat domain 51B [Mus musculus]
          Length = 476

 Score =  127 bits (318), Expect = 3e-29
 Identities = 67/199 (33%), Positives = 103/199 (51%), Gaps = 2/199 (1%)
 Frame = +1

Query: 268 KGHQRSVETVSFSPDSKQLASGGWDKRVMLWEVQSGQVLRHLVGHRDSIQSSDFAPSSDC 447
           KGH+ ++ +  FSP+ KQ+A+  WD  +MLW ++        VGH+D + S  F+P  + 
Sbjct: 15  KGHKAAITSADFSPNCKQIATASWDTFLMLWSLKPHARAYRYVGHKDVVTSLQFSPQGNL 74

Query: 448 LATGSWDSTIRMWDL-RGGTGAIFHQELEGHRGNISCLCFSAFG-LLASGSWDKTIHIWK 621
           LA+ S D T+R+W L R G  +    E + H   +  + FSA G LL + S DK+I +W 
Sbjct: 75  LASASRDRTVRLWVLDRKGKSS----EFKAHTAPVRSVDFSADGQLLVTASEDKSIKVWS 130

Query: 622 PSTRSLLVQLKGHVTWVKSIAFSPDGLQLASAGYSHTVKVWDCNTGRCTDTLKGVLDVAH 801
              +  L  L  H  WV+   FSPDG  + S     T+K+WD    +C +     +  A+
Sbjct: 131 MFRQRFLYSLYRHTHWVRCAKFSPDGRLIVSCSEDKTIKIWDTTNKQCVNNFSDSVGFAN 190

Query: 802 SCAFTPDGKLLVSGTADQA 858
              F P+G  + S  +D A
Sbjct: 191 FVDFNPNGTCIASAGSDHA 209



 Score =  108 bits (270), Expect = 1e-23
 Identities = 75/247 (30%), Positives = 111/247 (44%), Gaps = 8/247 (3%)
 Frame = +1

Query: 172 RFSPDGRLFASTSSDCTIRLWDVAKVECLQVLKGHQRSVETVSFSPDSKQLASGGWDKRV 351
           +FSP G L AS S D T+RLW + +       K H   V +V FS D + L +   DK +
Sbjct: 67  QFSPQGNLLASASRDRTVRLWVLDRKGKSSEFKAHTAPVRSVDFSADGQLLVTASEDKSI 126

Query: 352 MLWEVQSGQVLRHLVGHRDSIQSSDFAPSSDCLATGSWDSTIRMWDLRGGTGAIFHQELE 531
            +W +   + L  L  H   ++ + F+P    + + S D TI++WD    T         
Sbjct: 127 KVWSMFRQRFLYSLYRHTHWVRCAKFSPDGRLIVSCSEDKTIKIWDT---TNKQCVNNFS 183

Query: 532 GHRGNISCLCFSAFG-LLASGSWDKTIHIWKPSTRSLLVQLKGHVTWVKSIAFSPDGLQL 708
              G  + + F+  G  +AS   D  + IW      LL   + H   V  ++F P G  L
Sbjct: 184 DSVGFANFVDFNPNGTCIASAGSDHAVKIWDIRMNKLLQHYQVHSCGVNCLSFHPLGNSL 243

Query: 709 ASAGYSHTVKVWDCNTGRCTDTLKGVLDVAHSCAFTPDGKLLVSGTADQA-------RCQ 867
            +A    TVK+ D   GR   TL+G      + +F+ DG+LL SG AD            
Sbjct: 244 VTASSDGTVKMLDLIEGRLIYTLQGHTGPVFTVSFSKDGELLTSGGADAQVLIWRTNFIH 303

Query: 868 VHCKSPR 888
           +HCK P+
Sbjct: 304 LHCKDPK 310



 Score =  100 bits (250), Expect = 2e-21
 Identities = 75/256 (29%), Positives = 112/256 (43%), Gaps = 8/256 (3%)
 Frame = +1

Query: 109 AGGGESEILLPAPRG--GPVKFCRFSPDGRLFASTSSDCTIRLWDVAKVECLQVLKGHQR 282
           A G E  IL  + +G    +    FSP+ +  A+ S D  + LW +          GH+ 
Sbjct: 2   ASGLEDPILERSFKGHKAAITSADFSPNCKQIATASWDTFLMLWSLKPHARAYRYVGHKD 61

Query: 283 SVETVSFSPDSKQLASGGWDKRVMLWEVQSGQVLRHLVGHRDSIQSSDFAPSSDCLATGS 462
            V ++ FSP    LAS   D+ V LW +           H   ++S DF+     L T S
Sbjct: 62  VVTSLQFSPQGNLLASASRDRTVRLWVLDRKGKSSEFKAHTAPVRSVDFSADGQLLVTAS 121

Query: 463 WDSTIRMWDLRGGTGAIFHQELEGHRGNISCLCFSAFG-LLASGSWDKTIHIWKPSTRSL 639
            D +I++W +       F   L  H   + C  FS  G L+ S S DKTI IW  + +  
Sbjct: 122 EDKSIKVWSM---FRQRFLYSLYRHTHWVRCAKFSPDGRLIVSCSEDKTIKIWDTTNKQC 178

Query: 640 LVQLKGHVTWVKSIAFSPDGLQLASAGYSHTVKVWDCNTGRCTDTLKGVLDVAHSC---- 807
           +      V +   + F+P+G  +ASAG  H VK+WD    +     +      HSC    
Sbjct: 179 VNNFSDSVGFANFVDFNPNGTCIASAGSDHAVKIWDIRMNKLLQHYQ-----VHSCGVNC 233

Query: 808 -AFTPDGKLLVSGTAD 852
            +F P G  LV+ ++D
Sbjct: 234 LSFHPLGNSLVTASSD 249



 Score = 97.4 bits (241), Expect = 3e-20
 Identities = 58/200 (29%), Positives = 93/200 (46%), Gaps = 1/200 (0%)
 Frame = +1

Query: 157 PVKFCRFSPDGRLFASTSSDCTIRLWDVAKVECLQVLKGHQRSVETVSFSPDSKQLASGG 336
           PV+   FS DG+L  + S D +I++W + +   L  L  H   V    FSPD + + S  
Sbjct: 104 PVRSVDFSADGQLLVTASEDKSIKVWSMFRQRFLYSLYRHTHWVRCAKFSPDGRLIVSCS 163

Query: 337 WDKRVMLWEVQSGQVLRHLVGHRDSIQSSDFAPSSDCLATGSWDSTIRMWDLRGGTGAIF 516
            DK + +W+  + Q + +           DF P+  C+A+   D  +++WD+R       
Sbjct: 164 EDKTIKIWDTTNKQCVNNFSDSVGFANFVDFNPNGTCIASAGSDHAVKIWDIRMNK---L 220

Query: 517 HQELEGHRGNISCLCFSAFG-LLASGSWDKTIHIWKPSTRSLLVQLKGHVTWVKSIAFSP 693
            Q  + H   ++CL F   G  L + S D T+ +       L+  L+GH   V +++FS 
Sbjct: 221 LQHYQVHSCGVNCLSFHPLGNSLVTASSDGTVKMLDLIEGRLIYTLQGHTGPVFTVSFSK 280

Query: 694 DGLQLASAGYSHTVKVWDCN 753
           DG  L S G    V +W  N
Sbjct: 281 DGELLTSGGADAQVLIWRTN 300



 Score = 90.1 bits (222), Expect = 4e-18
 Identities = 53/158 (33%), Positives = 82/158 (51%), Gaps = 1/158 (0%)
 Frame = +1

Query: 385 RHLVGHRDSIQSSDFAPSSDCLATGSWDSTIRMWDLRGGTGAIFHQELEGHRGNISCLCF 564
           R   GH+ +I S+DF+P+   +AT SWD+ + +W L+    A       GH+  ++ L F
Sbjct: 12  RSFKGHKAAITSADFSPNCKQIATASWDTFLMLWSLKPHARA---YRYVGHKDVVTSLQF 68

Query: 565 SAFG-LLASGSWDKTIHIWKPSTRSLLVQLKGHVTWVKSIAFSPDGLQLASAGYSHTVKV 741
           S  G LLAS S D+T+ +W    +    + K H   V+S+ FS DG  L +A    ++KV
Sbjct: 69  SPQGNLLASASRDRTVRLWVLDRKGKSSEFKAHTAPVRSVDFSADGQLLVTASEDKSIKV 128

Query: 742 WDCNTGRCTDTLKGVLDVAHSCAFTPDGKLLVSGTADQ 855
           W     R   +L           F+PDG+L+VS + D+
Sbjct: 129 WSMFRQRFLYSLYRHTHWVRCAKFSPDGRLIVSCSEDK 166



 Score = 60.5 bits (145), Expect = 3e-09
 Identities = 30/111 (27%), Positives = 54/111 (48%)
 Frame = +1

Query: 154 GPVKFCRFSPDGRLFASTSSDCTIRLWDVAKVECLQVLKGHQRSVETVSFSPDSKQLASG 333
           G   F  F+P+G   AS  SD  +++WD+   + LQ  + H   V  +SF P    L + 
Sbjct: 187 GFANFVDFNPNGTCIASAGSDHAVKIWDIRMNKLLQHYQVHSCGVNCLSFHPLGNSLVTA 246

Query: 334 GWDKRVMLWEVQSGQVLRHLVGHRDSIQSSDFAPSSDCLATGSWDSTIRMW 486
             D  V + ++  G+++  L GH   + +  F+   + L +G  D+ + +W
Sbjct: 247 SSDGTVKMLDLIEGRLIYTLQGHTGPVFTVSFSKDGELLTSGGADAQVLIW 297


>ref|NP_038653.1| platelet-activating factor acetylhydrolase, isoform 1b, beta1
           subunit [Mus musculus]
          Length = 410

 Score =  125 bits (313), Expect = 1e-28
 Identities = 76/248 (30%), Positives = 114/248 (45%), Gaps = 21/248 (8%)
 Frame = +1

Query: 175 FSPDGRLFASTSSDCTIRLWDVAKVECLQVLKGHQRSVETVSFSPDSKQLASGGWDKRVM 354
           F   G+L AS S+D TI+LWD    EC++ + GH  +V +V+  P+   + S   DK + 
Sbjct: 158 FDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVAIMPNGDHIVSASRDKTIK 217

Query: 355 LWEVQSGQVLRHLVGHRDSIQSSDFAPSSDCLATGSWDSTIRMWDLRGGTGAIFHQELEG 534
           +WEVQ+G  ++   GHR+ ++          +A+ S D T+R+W +          EL  
Sbjct: 218 MWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVV---ATKECKAELRE 274

Query: 535 HRGNISCLCFS----------AFG-----------LLASGSWDKTIHIWKPSTRSLLVQL 651
           H   + C+ ++          A G            L SGS DKTI +W  ST   L+ L
Sbjct: 275 HEHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTL 334

Query: 652 KGHVTWVKSIAFSPDGLQLASAGYSHTVKVWDCNTGRCTDTLKGVLDVAHSCAFTPDGKL 831
            GH  WV+ + F   G  + S     T++VWD    RC  TL        S  F      
Sbjct: 335 VGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPY 394

Query: 832 LVSGTADQ 855
           +V+G+ DQ
Sbjct: 395 VVTGSVDQ 402



 Score =  113 bits (282), Expect = 4e-25
 Identities = 75/254 (29%), Positives = 120/254 (47%), Gaps = 21/254 (8%)
 Frame = +1

Query: 157 PVKFCRFSPDGRLFASTSSDCTIRLWDVAKVECLQVLKGHQRSVETVSFSPDSKQLASGG 336
           PV    F P   +  S S D TI++WD    +  + LKGH  SV+ +SF    K LAS  
Sbjct: 110 PVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCS 169

Query: 337 WDKRVMLWEVQSGQVLRHLVGHRDSIQSSDFAPSSDCLATGSWDSTIRMWDLRGGTGAIF 516
            D  + LW+ Q  + +R + GH  ++ S    P+ D + + S D TI+MW+++ G     
Sbjct: 170 ADMTIKLWDFQGFECIRTMHGHDHNVSSVAIMPNGDHIVSASRDKTIKMWEVQTGYCV-- 227

Query: 517 HQELEGHRGNISCLCFSAFG-LLASGSWDKTIHIWKPSTRSLLVQLKGHVTWVKSIAFSP 693
            +   GHR  +  +  +  G L+AS S D+T+ +W  +T+    +L+ H   V+ I+++P
Sbjct: 228 -KTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHEHVVECISWAP 286

Query: 694 D--------------------GLQLASAGYSHTVKVWDCNTGRCTDTLKGVLDVAHSCAF 813
           +                    G  L S     T+K+WD +TG C  TL G  +      F
Sbjct: 287 ESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLF 346

Query: 814 TPDGKLLVSGTADQ 855
              GK ++S   D+
Sbjct: 347 HSGGKFILSCADDK 360



 Score = 97.8 bits (242), Expect = 2e-20
 Identities = 59/187 (31%), Positives = 88/187 (47%), Gaps = 1/187 (0%)
 Frame = +1

Query: 265 LKGHQRSVETVSFSPDSKQLASGGWDKRVMLWEVQSGQVLRHLVGHRDSIQSSDFAPSSD 444
           L GH+  V  V F P    + S   D  + +W+ ++G   R L GH DS+Q   F  S  
Sbjct: 104 LSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGK 163

Query: 445 CLATGSWDSTIRMWDLRGGTGAIFHQELEGHRGNISCLCFSAFG-LLASGSWDKTIHIWK 621
            LA+ S D TI++WD +G       + + GH  N+S +     G  + S S DKTI +W+
Sbjct: 164 LLASCSADMTIKLWDFQGFECI---RTMHGHDHNVSSVAIMPNGDHIVSASRDKTIKMWE 220

Query: 622 PSTRSLLVQLKGHVTWVKSIAFSPDGLQLASAGYSHTVKVWDCNTGRCTDTLKGVLDVAH 801
             T   +    GH  WV+ +  + DG  +AS     TV+VW   T  C   L+    V  
Sbjct: 221 VQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHEHVVE 280

Query: 802 SCAFTPD 822
             ++ P+
Sbjct: 281 CISWAPE 287



 Score = 67.4 bits (163), Expect = 3e-11
 Identities = 34/103 (33%), Positives = 54/103 (52%)
 Frame = +1

Query: 187 GRLFASTSSDCTIRLWDVAKVECLQVLKGHQRSVETVSFSPDSKQLASGGWDKRVMLWEV 366
           G    S S D TI++WDV+   CL  L GH   V  V F    K + S   DK + +W+ 
Sbjct: 308 GPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDY 367

Query: 367 QSGQVLRHLVGHRDSIQSSDFAPSSDCLATGSWDSTIRMWDLR 495
           ++ + ++ L  H   + S DF  ++  + TGS D T+++W+ R
Sbjct: 368 KNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWECR 410


>ref|XP_987745.1| PREDICTED: similar to platelet-activating factor acetylhydrolase
           beta subunit [Mus musculus]
          Length = 312

 Score =  125 bits (313), Expect = 1e-28
 Identities = 76/248 (30%), Positives = 114/248 (45%), Gaps = 21/248 (8%)
 Frame = +1

Query: 175 FSPDGRLFASTSSDCTIRLWDVAKVECLQVLKGHQRSVETVSFSPDSKQLASGGWDKRVM 354
           F   G+L AS S+D TI+LWD    EC++ + GH  +V +V+  P+   + S   DK + 
Sbjct: 60  FDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVAIMPNGDHIVSASRDKTIK 119

Query: 355 LWEVQSGQVLRHLVGHRDSIQSSDFAPSSDCLATGSWDSTIRMWDLRGGTGAIFHQELEG 534
           +WEVQ+G  ++   GHR+ ++          +A+ S D T+R+W +          EL  
Sbjct: 120 MWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVV---ATKECKAELRE 176

Query: 535 HRGNISCLCFS----------AFG-----------LLASGSWDKTIHIWKPSTRSLLVQL 651
           H   + C+ ++          A G            L SGS DKTI +W  ST   L+ L
Sbjct: 177 HEHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTL 236

Query: 652 KGHVTWVKSIAFSPDGLQLASAGYSHTVKVWDCNTGRCTDTLKGVLDVAHSCAFTPDGKL 831
            GH  WV+ + F   G  + S     T++VWD    RC  TL        S  F      
Sbjct: 237 VGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPY 296

Query: 832 LVSGTADQ 855
           +V+G+ DQ
Sbjct: 297 VVTGSVDQ 304



 Score =  100 bits (248), Expect = 4e-21
 Identities = 66/230 (28%), Positives = 109/230 (47%), Gaps = 21/230 (9%)
 Frame = +1

Query: 229 LWDVAKVECLQVLKGHQRSVETVSFSPDSKQLASGGWDKRVMLWEVQSGQVLRHLVGHRD 408
           +WD    +  + LKGH  SV+ +SF    K LAS   D  + LW+ Q  + +R + GH  
Sbjct: 36  VWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDH 95

Query: 409 SIQSSDFAPSSDCLATGSWDSTIRMWDLRGGTGAIFHQELEGHRGNISCLCFSAFG-LLA 585
           ++ S    P+ D + + S D TI+MW+++ G      +   GHR  +  +  +  G L+A
Sbjct: 96  NVSSVAIMPNGDHIVSASRDKTIKMWEVQTGYCV---KTFTGHREWVRMVRPNQDGTLIA 152

Query: 586 SGSWDKTIHIWKPSTRSLLVQLKGHVTWVKSIAFSPD--------------------GLQ 705
           S S D+T+ +W  +T+    +L+ H   V+ I+++P+                    G  
Sbjct: 153 SCSNDQTVRVWVVATKECKAELREHEHVVECISWAPESSYSSISEATGSETKKSGKPGPF 212

Query: 706 LASAGYSHTVKVWDCNTGRCTDTLKGVLDVAHSCAFTPDGKLLVSGTADQ 855
           L S     T+K+WD +TG C  TL G  +      F   GK ++S   D+
Sbjct: 213 LLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDK 262



 Score = 80.1 bits (196), Expect = 4e-15
 Identities = 51/175 (29%), Positives = 84/175 (48%), Gaps = 21/175 (12%)
 Frame = +1

Query: 160 VKFCRFSPDGRLFASTSSDCTIRLWDVAKVECLQVLKGHQRSVETVSFSPDSKQ------ 321
           V+  R + DG L AS S+D T+R+W VA  EC   L+ H+  VE +S++P+S        
Sbjct: 139 VRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHEHVVECISWAPESSYSSISEA 198

Query: 322 --------------LASGGWDKRVMLWEVQSGQVLRHLVGHRDSIQSSDFAPSSDCLATG 459
                         L SG  DK + +W+V +G  L  LVGH + ++   F      + + 
Sbjct: 199 TGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSC 258

Query: 460 SWDSTIRMWDLRGGTGAIFHQELEGHRGNISCLCF-SAFGLLASGSWDKTIHIWK 621
           + D T+R+WD +        + L  H   ++ L F      + +GS D+T+ +W+
Sbjct: 259 ADDKTLRVWDYKNKR---CMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE 310



 Score = 67.4 bits (163), Expect = 3e-11
 Identities = 34/103 (33%), Positives = 54/103 (52%)
 Frame = +1

Query: 187 GRLFASTSSDCTIRLWDVAKVECLQVLKGHQRSVETVSFSPDSKQLASGGWDKRVMLWEV 366
           G    S S D TI++WDV+   CL  L GH   V  V F    K + S   DK + +W+ 
Sbjct: 210 GPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDY 269

Query: 367 QSGQVLRHLVGHRDSIQSSDFAPSSDCLATGSWDSTIRMWDLR 495
           ++ + ++ L  H   + S DF  ++  + TGS D T+++W+ R
Sbjct: 270 KNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWECR 312


>ref|NP_543124.1| WD repeat domain 5 [Mus musculus]
          Length = 334

 Score =  122 bits (307), Expect = 6e-28
 Identities = 75/240 (31%), Positives = 130/240 (54%), Gaps = 9/240 (3%)
 Frame = +1

Query: 160 VKFCRFSPDGRLFASTSSDCTIRLWDVAKVECLQVLKGHQRSVETVSFSPDSKQLASGGW 339
           V   +FSP+G   AS+S+D  I++W     +  + + GH+  +  V++S DS  L S   
Sbjct: 48  VSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASD 107

Query: 340 DKRVMLWEVQSGQVLRHLVGHRDSIQSSDFAPSSDCLATGSWDSTIRMWDLRGGTGAIFH 519
           DK + +W+V SG+ L+ L GH + +   +F P S+ + +GS+D ++R+WD++ G      
Sbjct: 108 DKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCL--- 164

Query: 520 QELEGHRGNISCLCFSAFG-LLASGSWDKTIHIWKPST----RSLLVQLKGHVTWVKSIA 684
           + L  H   +S + F+  G L+ S S+D    IW  ++    ++L+      V++VK   
Sbjct: 165 KTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVK--- 221

Query: 685 FSPDGLQLASAGYSHTVKVWDCNTGRCTDTLKGVLDVAHSCAF----TPDGKLLVSGTAD 852
           FSP+G  + +A   +T+K+WD + G+C  T  G  +  + C F       GK +VSG+ D
Sbjct: 222 FSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKY-CIFANFSVTGGKWIVSGSED 280



 Score =  108 bits (270), Expect = 1e-23
 Identities = 61/198 (30%), Positives = 104/198 (52%), Gaps = 2/198 (1%)
 Frame = +1

Query: 265 LKGHQRSVETVSFSPDSKQLASGGWDKRVMLWEVQSGQVLRHLVGHRDSIQSSDFAPSSD 444
           L GH ++V +V FSP+ + LAS   DK + +W    G+  + + GH+  I    ++  S+
Sbjct: 41  LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 100

Query: 445 CLATGSWDSTIRMWDLRGGTGAIFHQELEGHRGNISCLCFS-AFGLLASGSWDKTIHIWK 621
            L + S D T+++WD+  G      + L+GH   + C  F+    L+ SGS+D+++ IW 
Sbjct: 101 LLVSASDDKTLKIWDVSSGKCL---KTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD 157

Query: 622 PSTRSLLVQLKGHVTWVKSIAFSPDGLQLASAGYSHTVKVWDCNTGRCTDTLKGVLDVAH 801
             T   L  L  H   V ++ F+ DG  + S+ Y    ++WD  +G+C  TL    +   
Sbjct: 158 VKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPV 217

Query: 802 S-CAFTPDGKLLVSGTAD 852
           S   F+P+GK +++ T D
Sbjct: 218 SFVKFSPNGKYILAATLD 235



 Score =  105 bits (261), Expect = 1e-22
 Identities = 64/231 (27%), Positives = 107/231 (46%), Gaps = 5/231 (2%)
 Frame = +1

Query: 175 FSPDGRLFASTSSDCTIRLWDVAKVECLQVLKGHQRSVETVSFSPDSKQLASGGWDKRVM 354
           +S D  L  S S D T+++WDV+  +CL+ LKGH   V   +F+P S  + SG +D+ V 
Sbjct: 95  WSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVR 154

Query: 355 LWEVQSGQVLRHLVGHRDSIQSSDFAPSSDCLATGSWDSTIRMWDLRGGTGAIFHQELEG 534
           +W+V++G+ L+ L  H D + +  F      + + S+D   R+WD    +G      ++ 
Sbjct: 155 IWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT--ASGQCLKTLIDD 212

Query: 535 HRGNISCLCFSAFG-LLASGSWDKTIHIWKPSTRSLLVQLKGHVTWVKSIAFS----PDG 699
               +S + FS  G  + + + D T+ +W  S    L    GH    K   F+      G
Sbjct: 213 DNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKN-EKYCIFANFSVTGG 271

Query: 700 LQLASAGYSHTVKVWDCNTGRCTDTLKGVLDVAHSCAFTPDGKLLVSGTAD 852
             + S    + V +W+  T      L+G  DV  S A  P   ++ S   +
Sbjct: 272 KWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALE 322



 Score = 77.0 bits (188), Expect = 4e-14
 Identities = 57/179 (31%), Positives = 87/179 (48%), Gaps = 7/179 (3%)
 Frame = +1

Query: 106 DAGGGESEILLPAPRGGPVKFCRFSPDGRLFASTSSDCTIRLWDVAKVECLQVL-KGHQR 282
           D   G+    LPA    PV    F+ DG L  S+S D   R+WD A  +CL+ L      
Sbjct: 157 DVKTGKCLKTLPA-HSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNP 215

Query: 283 SVETVSFSPDSKQLASGGWDKRVMLWEVQSGQVLRHLVGHRDS---IQSSDFAPSSDCLA 453
            V  V FSP+ K + +   D  + LW+   G+ L+   GH++    I ++        + 
Sbjct: 216 PVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIV 275

Query: 454 TGSWDSTIRMWDLRGGTGAIFHQELEGHRG-NISCLCFSAFGLLASGSW--DKTIHIWK 621
           +GS D+ + +W+L+  T  I  Q+L+GH    IS  C     ++AS +   DKTI +WK
Sbjct: 276 SGSEDNLVYIWNLQ--TKEIV-QKLQGHTDVVISTACHPTENIIASAALENDKTIKLWK 331



 Score = 75.1 bits (183), Expect = 1e-13
 Identities = 42/112 (37%), Positives = 58/112 (51%), Gaps = 1/112 (0%)
 Frame = +1

Query: 526 LEGHRGNISCLCFSAFG-LLASGSWDKTIHIWKPSTRSLLVQLKGHVTWVKSIAFSPDGL 702
           L GH   +S + FS  G  LAS S DK I IW          + GH   +  +A+S D  
Sbjct: 41  LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSN 100

Query: 703 QLASAGYSHTVKVWDCNTGRCTDTLKGVLDVAHSCAFTPDGKLLVSGTADQA 858
            L SA    T+K+WD ++G+C  TLKG  +    C F P   L+VSG+ D++
Sbjct: 101 LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDES 152


>ref|NP_663406.1| Notchless gene homolog [Mus musculus]
          Length = 485

 Score =  114 bits (284), Expect = 3e-25
 Identities = 67/180 (37%), Positives = 101/180 (56%), Gaps = 6/180 (3%)
 Frame = +1

Query: 175 FSPDGRLFASTSSDCTIRLWDVAKVECLQVLKGHQRSVETVSFSPDSKQLASGGWDKRVM 354
           FSP G+  AS S D T+R WD++        KGH+  V ++S+SPD K+LASG  + +++
Sbjct: 122 FSPTGKYLASGSGDTTVRFWDLSTETPHFTCKGHRHWVLSISWSPDGKKLASGCKNGQIL 181

Query: 355 LWEVQSG-QVLRHLVGHRDSIQSSDFAP---SSDC--LATGSWDSTIRMWDLRGGTGAIF 516
           LW+  +G QV R L GH   I    + P   + +C  +A+ S D ++R+WD   G     
Sbjct: 182 LWDPSTGLQVGRTLTGHSKWITGLSWEPLHMNPECRYVASSSKDGSVRVWDTTAGR---C 238

Query: 517 HQELEGHRGNISCLCFSAFGLLASGSWDKTIHIWKPSTRSLLVQLKGHVTWVKSIAFSPD 696
            + L GH  +++CL +   GLL S S D+TI +W+     L   L+GH  WV ++A S D
Sbjct: 239 ERILTGHTQSVTCLRWGGDGLLYSASQDRTIKVWRAHDGVLCRTLQGHGHWVNTMALSTD 298



 Score =  110 bits (276), Expect = 2e-24
 Identities = 74/246 (30%), Positives = 127/246 (51%), Gaps = 5/246 (2%)
 Frame = +1

Query: 178 SPDGRLFASTSSDCTIRLWDVAKVECLQVLKGHQRSVETVSFSPDSKQLASGGWDKRVML 357
           +P+ R  AS+S D ++R+WD     C ++L GH +SV  + +  D   L S   D+ + +
Sbjct: 213 NPECRYVASSSKDGSVRVWDTTAGRCERILTGHTQSVTCLRWGGDGL-LYSASQDRTIKV 271

Query: 358 WEVQSGQVLRHLVGHRDSIQSSDFAPSSD-CLATGSWD---STIRMWDLRGGTGAIFHQE 525
           W    G + R L GH   + +   A S+D  L TG+++   +T+   DL+G    +  +E
Sbjct: 272 WRAHDGVLCRTLQGHGHWVNT--MALSTDYALRTGAFEPAEATVNAQDLQGSLKEL--KE 327

Query: 526 LEGHRGNISCLCFSAFGLLASGSWDKTIHIWKPST-RSLLVQLKGHVTWVKSIAFSPDGL 702
               R N+  +       L SGS D T+ +W P+  +  L ++ GH   +  + FSPD  
Sbjct: 328 RASSRYNL--VRGQGPERLVSGSDDFTLFLWSPAEDKKPLARMTGHQALINQVLFSPDSR 385

Query: 703 QLASAGYSHTVKVWDCNTGRCTDTLKGVLDVAHSCAFTPDGKLLVSGTADQARCQVHCKS 882
            +ASA +  ++K+WD  TG+   +L+G +   +  A++ D +LLVSG++D        K+
Sbjct: 386 IVASASFDKSIKLWDGRTGKYLASLRGHVAAVYQIAWSADSRLLVSGSSDSTLKVWDVKA 445

Query: 883 PRAAQD 900
            + A D
Sbjct: 446 QKLATD 451



 Score = 85.9 bits (211), Expect = 8e-17
 Identities = 64/235 (27%), Positives = 101/235 (42%), Gaps = 44/235 (18%)
 Frame = +1

Query: 172 RFSPDGRLFASTSSDCTIRLWDVAKVECLQVLKGHQRSVETVSFSPD------------- 312
           R+  DG L+ S S D TI++W        + L+GH   V T++ S D             
Sbjct: 253 RWGGDGLLY-SASQDRTIKVWRAHDGVLCRTLQGHGHWVNTMALSTDYALRTGAFEPAEA 311

Query: 313 -----------------------------SKQLASGGWDKRVMLWE-VQSGQVLRHLVGH 402
                                         ++L SG  D  + LW   +  + L  + GH
Sbjct: 312 TVNAQDLQGSLKELKERASSRYNLVRGQGPERLVSGSDDFTLFLWSPAEDKKPLARMTGH 371

Query: 403 RDSIQSSDFAPSSDCLATGSWDSTIRMWDLRGGTGAIFHQELEGHRGNISCLCFSAFG-L 579
           +  I    F+P S  +A+ S+D +I++WD R G    +   L GH   +  + +SA   L
Sbjct: 372 QALINQVLFSPDSRIVASASFDKSIKLWDGRTGK---YLASLRGHVAAVYQIAWSADSRL 428

Query: 580 LASGSWDKTIHIWKPSTRSLLVQLKGHVTWVKSIAFSPDGLQLASAGYSHTVKVW 744
           L SGS D T+ +W    + L   L GH   V ++ +SPDG ++AS G    +++W
Sbjct: 429 LVSGSSDSTLKVWDVKAQKLATDLPGHADEVYAVDWSPDGQRVASGGKDKCLRIW 483



 Score = 84.3 bits (207), Expect = 2e-16
 Identities = 65/219 (29%), Positives = 99/219 (45%), Gaps = 6/219 (2%)
 Frame = +1

Query: 241 AKVECLQVLKGHQRSVETVSFSPDSKQLASGGWDKRVMLWEVQSGQVLRHLVGHRDSIQS 420
           A   C   L+GH  +V +V+FSP  K LASG  D  V  W++ +        GHR  + S
Sbjct: 102 AVTRCTSSLEGHSEAVISVAFSPTGKYLASGSGDTTVRFWDLSTETPHFTCKGHRHWVLS 161

Query: 421 SDFAPSSDCLATGSWDSTIRMWDLRGGTGAIFHQELEGHRGNISCLCFSAFGL------L 582
             ++P    LA+G  +  I +WD    TG    + L GH   I+ L +    +      +
Sbjct: 162 ISWSPDGKKLASGCKNGQILLWD--PSTGLQVGRTLTGHSKWITGLSWEPLHMNPECRYV 219

Query: 583 ASGSWDKTIHIWKPSTRSLLVQLKGHVTWVKSIAFSPDGLQLASAGYSHTVKVWDCNTGR 762
           AS S D ++ +W  +       L GH   V  + +  DGL L SA    T+KVW  + G 
Sbjct: 220 ASSSKDGSVRVWDTTAGRCERILTGHTQSVTCLRWGGDGL-LYSASQDRTIKVWRAHDGV 278

Query: 763 CTDTLKGVLDVAHSCAFTPDGKLLVSGTADQARCQVHCK 879
              TL+G     ++ A + D   L +G  + A   V+ +
Sbjct: 279 LCRTLQGHGHWVNTMALSTD-YALRTGAFEPAEATVNAQ 316



 Score = 83.2 bits (204), Expect = 5e-16
 Identities = 50/142 (35%), Positives = 80/142 (56%), Gaps = 2/142 (1%)
 Frame = +1

Query: 202 STSSDCTIRLWDVAK-VECLQVLKGHQRSVETVSFSPDSKQLASGGWDKRVMLWEVQSGQ 378
           S S D T+ LW  A+  + L  + GHQ  +  V FSPDS+ +AS  +DK + LW+ ++G+
Sbjct: 346 SGSDDFTLFLWSPAEDKKPLARMTGHQALINQVLFSPDSRIVASASFDKSIKLWDGRTGK 405

Query: 379 VLRHLVGHRDSIQSSDFAPSSDCLATGSWDSTIRMWDLRGGTGAIFHQELEGHRGNISCL 558
            L  L GH  ++    ++  S  L +GS DST+++WD++    A    +L GH   +  +
Sbjct: 406 YLASLRGHVAAVYQIAWSADSRLLVSGSSDSTLKVWDVKAQKLAT---DLPGHADEVYAV 462

Query: 559 CFSAFGL-LASGSWDKTIHIWK 621
            +S  G  +ASG  DK + IW+
Sbjct: 463 DWSPDGQRVASGGKDKCLRIWR 484


  Database: RefSeqMP
    Posted date:  Aug 2, 2006 12:58 AM
  Number of letters in database: 21,768,885
  Number of sequences in database:  45,328
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 64,474,544
Number of Sequences: 45328
Number of extensions: 1935538
Number of successful extensions: 10634
Number of sequences better than 1.0e-05: 10
Number of HSP's better than  0.0 without gapping: 6140
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9012
length of database: 21,768,885
effective HSP length: 106
effective length of database: 16,964,117
effective search space used: 4936558047
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)