BLASTX 2.2.10 [Oct-19-2004]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20060611S-033288
(569 letters)
Database: RefSeqSP
1040 sequences; 434,620 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_999500.1| tropomyosin 4 [Sus scrofa] 92 7e-21
Alignment gi|NP_001001632.1| tropomyosin 3 [Sus scrofa] 85 1e-18
Alignment gi|NP_999301.1| myosin heavy chain 2a [Sus scrofa] 43 6e-06
>ref|NP_999500.1| tropomyosin 4 [Sus scrofa]
Length = 248
Score = 92.4 bits (228), Expect = 7e-21
Identities = 51/125 (40%), Positives = 79/125 (63%)
Frame = +1
Query: 193 LTHLHKKLKGTEDELDLYSENLKDAQE*LELSYMKASDSKGDVAALNQRIQLPQDEKHRS 372
L + +K++ + + D + + Q L+ + ++GDVAALN+RIQL ++E R+
Sbjct: 7 LEAVKRKIQALQQQADEAEDRAQGLQRELDGERERREKAEGDVAALNRRIQLVEEELDRA 66
Query: 373 QERLSTALPNLEEAEQAADATQRRTKVTKTRALYESEKMVIHDKQLAEDKSTADDAYDHF 552
QERL+TAL LEEAE+AAD ++R KV + RA+ + EKM I + QL E K A++A +
Sbjct: 67 QERLATALQKLEEAEKAADESERGMKVIENRAMKDEEKMEIQEMQLKEAKHIAEEADRKY 126
Query: 553 KEAAR 567
+E AR
Sbjct: 127 EEVAR 131
Score = 51.6 bits (122), Expect = 1e-08
Identities = 30/127 (23%), Positives = 66/127 (51%)
Frame = +1
Query: 64 AMEAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVGEELTHLHKKLKGTEDELDL 243
++EA+K+K+Q L+ + A DRA+ + + E+ ++ ++ L+++++ E+ELD
Sbjct: 6 SLEAVKRKIQALQQQADEAEDRAQGLQRELDGERERREKAEGDVAALNRRIQLVEEELDR 65
Query: 244 YSENLKDAQE*LELSYMKASDSKGDVAALNQRIQLPQDEKHRSQERLSTALPNLEEAEQA 423
E L A + LE + A +S+ + + R +++ + +L A EEA++
Sbjct: 66 AQERLATALQKLEEAEKAADESERGMKVIENRAMKDEEKMEIQEMQLKEAKHIAEEADRK 125
Query: 424 ADATQRR 444
+ R+
Sbjct: 126 YEEVARK 132
>ref|NP_001001632.1| tropomyosin 3 [Sus scrofa]
Length = 248
Score = 85.1 bits (209), Expect = 1e-18
Identities = 48/120 (40%), Positives = 75/120 (62%)
Frame = +1
Query: 208 KKLKGTEDELDLYSENLKDAQE*LELSYMKASDSKGDVAALNQRIQLPQDEKHRSQERLS 387
+K++ + + D E + Q +E ++ +VA+LN+RIQL ++E R+QERL+
Sbjct: 12 RKIQVLQQQADDAEERAERLQREVEGERRAREQAEAEVASLNRRIQLVEEELDRAQERLA 71
Query: 388 TALPNLEEAEQAADATQRRTKVTKTRALYESEKMVIHDKQLAEDKSTADDAYDHFKEAAR 567
TAL LEEAE+AAD ++R KV + RAL + EKM + + QL E K A++A ++E AR
Sbjct: 72 TALQKLEEAEKAADESERGMKVIENRALKDEEKMELQEIQLKEAKHIAEEADRKYEEVAR 131
Score = 55.8 bits (133), Expect = 7e-10
Identities = 47/181 (25%), Positives = 91/181 (50%), Gaps = 21/181 (11%)
Frame = +1
Query: 67 MEAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVGEELTHLHKKLKGTEDELDLY 246
+EA+K+K+Q+L+ ++A +RAE+ + + + +Q E+ L+++++ E+ELD
Sbjct: 7 IEAVKRKIQVLQQQADDAEERAERLQREVEGERRAREQAEAEVASLNRRIQLVEEELDRA 66
Query: 247 SENLKDAQE*LELSYMKASDSKGDVAALNQRIQLPQDEKHRSQE-RLSTALPNLEEAEQA 423
E L A + LE + A +S+ + + R L +EK QE +L A EEA++
Sbjct: 67 QERLATALQKLEEAEKAADESERGMKVIENR-ALKDEEKMELQEIQLKEAKHIAEEADRK 125
Query: 424 --------------ADATQRRTKVTKTRALYESEKMVIHDKQL-----AEDK-STADDAY 543
+ T+ R ++ ++R E++ + D+ L AE+K S +D Y
Sbjct: 126 YEEVARKLVIIEGDLERTEERAELAESRCREMDEQIRLMDQNLKCLSAAEEKYSQKEDKY 185
Query: 544 D 546
+
Sbjct: 186 E 186
>ref|NP_999301.1| myosin heavy chain 2a [Sus scrofa]
Length = 1939
Score = 42.7 bits (99), Expect = 6e-06
Identities = 47/155 (30%), Positives = 77/155 (49%), Gaps = 6/155 (3%)
Frame = +1
Query: 76 IKKKMQMLKLDKENAIDRAEQAESDKKA-AEEKCKQVGEELTHLHKKLK----GTEDELD 240
+++KM L L ++N + QAE++ A AEE+C Q+ + L K+K EDE +
Sbjct: 877 LEEKMVTL-LKEKNDLQLQVQAEAEGLADAEERCDQLIKTKIQLEAKIKEVTERAEDEEE 935
Query: 241 LYSENLKDAQE*LELSYMKASDSKGDVAALNQRIQLPQDEKHRSQERLSTALPNLEEAEQ 420
+ +E L + LE + S+ K D+ L + + EKH ++ ++ NL E
Sbjct: 936 INAE-LTAKKRKLE---DECSELKKDIDDLELTLAKVEKEKHATENKVK----NLTEEMA 987
Query: 421 AADATQRRTKVTK-TRALYESEKMVIHDKQLAEDK 522
D T K+TK +AL E+ + + D Q EDK
Sbjct: 988 GLDET--IAKLTKEKKALQEAHQQTLDDLQAEEDK 1020
Database: RefSeqSP
Posted date: Aug 1, 2006 7:14 PM
Number of letters in database: 434,620
Number of sequences in database: 1040
Lambda K H
0.310 0.124 0.326
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 373,909
Number of Sequences: 1040
Number of extensions: 8045
Number of successful extensions: 43
Number of sequences better than 1.0e-05: 3
Number of HSP's better than 0.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 40
length of database: 434,620
effective HSP length: 72
effective length of database: 359,740
effective search space used: 42089580
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
Search to RefSeqBP
BLASTX 2.2.10 [Oct-19-2004]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20060611S-033288
(569 letters)
Database: RefSeqBP
33,508 sequences; 16,112,626 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_873616.1| PREDICTED: similar to tropomyosin 1, alpha isof... 219 1e-57
Alignment gi|XP_886860.1| PREDICTED: similar to tropomyosin 4 isoform 1 i... 199 2e-51
Alignment gi|NP_001013608.1| tropomyosin 1 alpha chain [Bos taurus] 195 2e-50
Alignment gi|NP_001010995.2| tropomyosin 2 [Bos taurus] 193 8e-50
Alignment gi|NP_001011674.1| tropomyosin 3 [Bos taurus] 191 2e-49
Alignment gi|XP_615314.2| PREDICTED: similar to tropomyosin 4 isoform 1 [... 139 2e-33
Alignment gi|XP_874820.1| PREDICTED: similar to tropomyosin 3 isoform 2 i... 85 4e-17
Alignment gi|XP_877353.1| PREDICTED: similar to tropomyosin 3 isoform 2 i... 84 9e-17
Alignment gi|XP_877244.1| PREDICTED: similar to tropomyosin 3 isoform 2 i... 84 9e-17
Alignment gi|XP_876949.1| PREDICTED: similar to tropomyosin 3 isoform 2 i... 84 9e-17
>ref|XP_873616.1| PREDICTED: similar to tropomyosin 1, alpha isoform 2 [Bos taurus]
Length = 284
Score = 219 bits (558), Expect = 1e-57
Identities = 118/167 (70%), Positives = 137/167 (82%)
Frame = +1
Query: 67 MEAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVGEELTHLHKKLKGTEDELDLY 246
MEAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQV EELTHL KKLK TEDELD Y
Sbjct: 1 MEAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLKETEDELDKY 60
Query: 247 SENLKDAQE*LELSYMKASDSKGDVAALNQRIQLPQDEKHRSQERLSTALPNLEEAEQAA 426
SENLKDAQE LEL+ KASD++GDVAALN+RIQL ++E R+QERL+TAL LEEAE+AA
Sbjct: 61 SENLKDAQEKLELTEKKASDAEGDVAALNRRIQLVEEELDRAQERLATALQKLEEAEKAA 120
Query: 427 DATQRRTKVTKTRALYESEKMVIHDKQLAEDKSTADDAYDHFKEAAR 567
D ++R KV + RA+ + EKM I + QL E K A++A ++E AR
Sbjct: 121 DESERGMKVIENRAMKDEEKMEIQEMQLKEAKHIAEEADRKYEEVAR 167
>ref|XP_886860.1| PREDICTED: similar to tropomyosin 4 isoform 1 isoform 3 [Bos
taurus]
Length = 326
Score = 199 bits (505), Expect = 2e-51
Identities = 118/209 (56%), Positives = 137/209 (65%), Gaps = 42/209 (20%)
Frame = +1
Query: 67 MEAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVGE------------------- 189
MEAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQV E
Sbjct: 1 MEAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVTENMCAEEGLSVAANKRREGG 60
Query: 190 -----------------------ELTHLHKKLKGTEDELDLYSENLKDAQE*LELSYMKA 300
ELTHL KKLK TEDELD YSENLKDAQE LEL+ KA
Sbjct: 61 LDPSHSSLPDLGGSSKAAARVEEELTHLQKKLKETEDELDKYSENLKDAQEKLELTEKKA 120
Query: 301 SDSKGDVAALNQRIQLPQDEKHRSQERLSTALPNLEEAEQAADATQRRTKVTKTRALYES 480
SD++GDVAALN+RIQL ++E R+QERL+TAL LEEAE+AAD ++R KV + RA+ +
Sbjct: 121 SDAEGDVAALNRRIQLVEEELDRAQERLATALQKLEEAEKAADESERGMKVIENRAMKDE 180
Query: 481 EKMVIHDKQLAEDKSTADDAYDHFKEAAR 567
EKM I + QL E K A++A ++E AR
Sbjct: 181 EKMEIQEMQLKEAKHIAEEADRKYEEVAR 209
>ref|NP_001013608.1| tropomyosin 1 alpha chain [Bos taurus]
Length = 284
Score = 195 bits (495), Expect = 2e-50
Identities = 105/167 (62%), Positives = 132/167 (79%)
Frame = +1
Query: 67 MEAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVGEELTHLHKKLKGTEDELDLY 246
M+AIKKKMQMLKLDKENA+DRAEQAE+DKKAAE++ KQ+ +EL L KKLK TEDELD Y
Sbjct: 1 MDAIKKKMQMLKLDKENALDRAEQAEADKKAAEDRSKQLEDELVSLQKKLKATEDELDKY 60
Query: 247 SENLKDAQE*LELSYMKASDSKGDVAALNQRIQLPQDEKHRSQERLSTALPNLEEAEQAA 426
SE LKDAQE LEL+ KA+D++ DVA+LN+RIQL ++E R+QERL+TAL LEEAE+AA
Sbjct: 61 SEALKDAQEKLELAEKKATDAEADVASLNRRIQLVEEELDRAQERLATALQKLEEAEKAA 120
Query: 427 DATQRRTKVTKTRALYESEKMVIHDKQLAEDKSTADDAYDHFKEAAR 567
D ++R KV ++RA + EKM I + QL E K A+DA ++E AR
Sbjct: 121 DESERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAEDADRKYEEVAR 167
>ref|NP_001010995.2| tropomyosin 2 [Bos taurus]
Length = 284
Score = 193 bits (490), Expect = 8e-50
Identities = 101/167 (60%), Positives = 132/167 (79%)
Frame = +1
Query: 67 MEAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVGEELTHLHKKLKGTEDELDLY 246
M+AIKKKMQMLKLDKENAIDRAEQAE+DKK AE++CKQ+ EE L KKLKGTEDE++ Y
Sbjct: 1 MDAIKKKMQMLKLDKENAIDRAEQAEADKKQAEDRCKQLEEEQQALQKKLKGTEDEVEKY 60
Query: 247 SENLKDAQE*LELSYMKASDSKGDVAALNQRIQLPQDEKHRSQERLSTALPNLEEAEQAA 426
SE++KDAQE LE + KA+D++ DVA+LN+RIQL ++E R+QERL+TAL LEEAE+AA
Sbjct: 61 SESVKDAQEKLEQAEKKATDAEADVASLNRRIQLVEEELDRAQERLATALQKLEEAEKAA 120
Query: 427 DATQRRTKVTKTRALYESEKMVIHDKQLAEDKSTADDAYDHFKEAAR 567
D ++R KV + RA+ + EKM + + QL E K A+D+ ++E AR
Sbjct: 121 DESERGMKVIENRAMKDEEKMELQEMQLKEAKHIAEDSDRKYEEVAR 167
>ref|NP_001011674.1| tropomyosin 3 [Bos taurus]
Length = 284
Score = 191 bits (486), Expect = 2e-49
Identities = 102/167 (61%), Positives = 132/167 (79%)
Frame = +1
Query: 67 MEAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVGEELTHLHKKLKGTEDELDLY 246
MEAIKKKMQMLKLDKENA+DRAEQAE+++K AEE+ KQ+ +EL + KKLKGTEDELD Y
Sbjct: 1 MEAIKKKMQMLKLDKENALDRAEQAEAEQKQAEERSKQLEDELAAMQKKLKGTEDELDKY 60
Query: 247 SENLKDAQE*LELSYMKASDSKGDVAALNQRIQLPQDEKHRSQERLSTALPNLEEAEQAA 426
SE LKDAQE LEL+ KA+D++ +VA+LN+RIQL ++E R+QERL+TAL LEEAE+AA
Sbjct: 61 SEALKDAQEKLELAEKKAADAEAEVASLNRRIQLVEEELDRAQERLATALQKLEEAEKAA 120
Query: 427 DATQRRTKVTKTRALYESEKMVIHDKQLAEDKSTADDAYDHFKEAAR 567
D ++R KV + RAL + EKM + + QL E K A++A ++E AR
Sbjct: 121 DESERGMKVIENRALKDEEKMELQEIQLKEAKHIAEEADRKYEEVAR 167
>ref|XP_615314.2| PREDICTED: similar to tropomyosin 4 isoform 1 [Bos taurus]
Length = 242
Score = 139 bits (349), Expect = 2e-33
Identities = 84/167 (50%), Positives = 102/167 (61%)
Frame = +1
Query: 67 MEAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVGEELTHLHKKLKGTEDELDLY 246
MEAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQ
Sbjct: 1 MEAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQ---------------------- 38
Query: 247 SENLKDAQE*LELSYMKASDSKGDVAALNQRIQLPQDEKHRSQERLSTALPNLEEAEQAA 426
++GDVAALN+RIQL ++E R+QERL+TAL LEEAE+AA
Sbjct: 39 --------------------AEGDVAALNRRIQLVEEELDRAQERLATALQKLEEAEKAA 78
Query: 427 DATQRRTKVTKTRALYESEKMVIHDKQLAEDKSTADDAYDHFKEAAR 567
D ++R KV + RA+ + EKM I + QL E K A++A ++E AR
Sbjct: 79 DESERGMKVIENRAMKDEEKMEIQEMQLKEAKHIAEEADRKYEEVAR 125
>ref|XP_874820.1| PREDICTED: similar to tropomyosin 3 isoform 2 isoform 2 [Bos
taurus]
Length = 248
Score = 84.7 bits (208), Expect = 4e-17
Identities = 46/119 (38%), Positives = 76/119 (63%)
Frame = +1
Query: 211 KLKGTEDELDLYSENLKDAQE*LELSYMKASDSKGDVAALNQRIQLPQDEKHRSQERLST 390
K++ + + D E K Q+ ++ ++ +V +LN+RIQL ++E +R+QERL+T
Sbjct: 13 KIQVLQQQADDAEERAKRLQQKVDGERWAREQAEAEVVSLNRRIQLVEEELNRAQERLAT 72
Query: 391 ALPNLEEAEQAADATQRRTKVTKTRALYESEKMVIHDKQLAEDKSTADDAYDHFKEAAR 567
AL LEEAE+AAD ++R KV + +AL + EKM + + QL E K A++A+ ++E AR
Sbjct: 73 ALQKLEEAEKAADESERVMKVIENQALKDEEKMELQEIQLKEAKHIAEEAHRKYEEVAR 131
>ref|XP_877353.1| PREDICTED: similar to tropomyosin 3 isoform 2 isoform 8 [Bos
taurus]
Length = 248
Score = 83.6 bits (205), Expect = 9e-17
Identities = 54/169 (31%), Positives = 89/169 (52%)
Frame = +1
Query: 61 PAMEAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVGEELTHLHKKLKGTEDELD 240
P +EA+K+K+Q+L+ ++A +RAE+ + + + +Q
Sbjct: 5 PTIEAVKRKIQVLQQQADDAQERAERLQREVEGEGRAREQ-------------------- 44
Query: 241 LYSENLKDAQE*LELSYMKASDSKGDVAALNQRIQLPQDEKHRSQERLSTALPNLEEAEQ 420
++ +VA+LN+RIQL ++E R+QERL+TAL LEEAE+
Sbjct: 45 ----------------------AEAEVASLNRRIQLVEEELDRAQERLATALQKLEEAEK 82
Query: 421 AADATQRRTKVTKTRALYESEKMVIHDKQLAEDKSTADDAYDHFKEAAR 567
AAD ++R KV + +AL + EKM + + QL E K A++A ++E AR
Sbjct: 83 AADESERGMKVIENQALKDEEKMELQEIQLKEAKHIAEEADRKYEEVAR 131
>ref|XP_877244.1| PREDICTED: similar to tropomyosin 3 isoform 2 isoform 7 [Bos
taurus]
Length = 188
Score = 83.6 bits (205), Expect = 9e-17
Identities = 54/169 (31%), Positives = 89/169 (52%)
Frame = +1
Query: 61 PAMEAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVGEELTHLHKKLKGTEDELD 240
P +EA+K+K+Q+L+ ++A +RAE+ + + + +Q
Sbjct: 5 PTIEAVKRKIQVLQQQADDAQERAERLQREVEGEGRAREQ-------------------- 44
Query: 241 LYSENLKDAQE*LELSYMKASDSKGDVAALNQRIQLPQDEKHRSQERLSTALPNLEEAEQ 420
++ +VA+LN+RIQL ++E R+QERL+TAL LEEAE+
Sbjct: 45 ----------------------AEAEVASLNRRIQLVEEELDRAQERLATALQKLEEAEK 82
Query: 421 AADATQRRTKVTKTRALYESEKMVIHDKQLAEDKSTADDAYDHFKEAAR 567
AAD ++R KV + +AL + EKM + + QL E K A++A ++E AR
Sbjct: 83 AADESERGMKVIENQALKDEEKMELQEIQLKEAKHIAEEADRKYEEVAR 131
>ref|XP_876949.1| PREDICTED: similar to tropomyosin 3 isoform 2 isoform 4 [Bos
taurus]
Length = 160
Score = 83.6 bits (205), Expect = 9e-17
Identities = 54/169 (31%), Positives = 89/169 (52%)
Frame = +1
Query: 61 PAMEAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVGEELTHLHKKLKGTEDELD 240
P +EA+K+K+Q+L+ ++A +RAE+ + + + +Q
Sbjct: 5 PTIEAVKRKIQVLQQQADDAQERAERLQREVEGEGRAREQ-------------------- 44
Query: 241 LYSENLKDAQE*LELSYMKASDSKGDVAALNQRIQLPQDEKHRSQERLSTALPNLEEAEQ 420
++ +VA+LN+RIQL ++E R+QERL+TAL LEEAE+
Sbjct: 45 ----------------------AEAEVASLNRRIQLVEEELDRAQERLATALQKLEEAEK 82
Query: 421 AADATQRRTKVTKTRALYESEKMVIHDKQLAEDKSTADDAYDHFKEAAR 567
AAD ++R KV + +AL + EKM + + QL E K A++A ++E AR
Sbjct: 83 AADESERGMKVIENQALKDEEKMELQEIQLKEAKHIAEEADRKYEEVAR 131
Database: RefSeqBP
Posted date: Aug 1, 2006 7:14 PM
Number of letters in database: 16,112,626
Number of sequences in database: 33,508
Lambda K H
0.310 0.124 0.326
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,235,769
Number of Sequences: 33508
Number of extensions: 315705
Number of successful extensions: 1518
Number of sequences better than 1.0e-05: 10
Number of HSP's better than 0.0 without gapping: 1231
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1453
length of database: 16,112,626
effective HSP length: 96
effective length of database: 12,895,858
effective search space used: 1199314794
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
Search to RefSeqHP
BLASTX 2.2.10 [Oct-19-2004]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20060611S-033288
(569 letters)
Database: RefSeqHP
39,411 sequences; 17,774,539 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001018004.1| tropomyosin 1 alpha chain isoform 3 [Homo sa... 197 5e-51
Alignment gi|NP_000357.3| tropomyosin 1 alpha chain isoform 5 [Homo sapiens] 197 5e-51
Alignment gi|NP_001018006.1| tropomyosin 1 alpha chain isoform 4 [Homo sa... 197 5e-51
Alignment gi|NP_001018005.1| tropomyosin 1 alpha chain isoform 1 [Homo sa... 197 5e-51
Alignment gi|NP_998839.1| tropomyosin 2 (beta) isoform 2 [Homo sapiens] 191 3e-49
Alignment gi|NP_003280.2| tropomyosin 2 (beta) isoform 1 [Homo sapiens] 191 3e-49
Alignment gi|NP_001018020.1| tropomyosin 1 alpha chain isoform 7 [Homo sa... 160 6e-40
Alignment gi|NP_001018007.1| tropomyosin 1 alpha chain isoform 2 [Homo sa... 160 6e-40
Alignment gi|NP_689476.1| tropomyosin 3 isoform 1 [Homo sapiens] 115 2e-26
Alignment gi|NP_003281.1| tropomyosin 4 [Homo sapiens] 92 2e-19
>ref|NP_001018004.1| tropomyosin 1 alpha chain isoform 3 [Homo sapiens]
Length = 284
Score = 197 bits (501), Expect = 5e-51
Identities = 106/167 (63%), Positives = 133/167 (79%)
Frame = +1
Query: 67 MEAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVGEELTHLHKKLKGTEDELDLY 246
M+AIKKKMQMLKLDKENA+DRAEQAE+DKKAAE++ KQ+ +EL L KKLKGTEDELD Y
Sbjct: 1 MDAIKKKMQMLKLDKENALDRAEQAEADKKAAEDRSKQLEDELVSLQKKLKGTEDELDKY 60
Query: 247 SENLKDAQE*LELSYMKASDSKGDVAALNQRIQLPQDEKHRSQERLSTALPNLEEAEQAA 426
SE LKDAQE LEL+ KA+D++ DVA+LN+RIQL ++E R+QERL+TAL LEEAE+AA
Sbjct: 61 SEALKDAQEKLELAEKKATDAEADVASLNRRIQLVEEELDRAQERLATALQKLEEAEKAA 120
Query: 427 DATQRRTKVTKTRALYESEKMVIHDKQLAEDKSTADDAYDHFKEAAR 567
D ++R KV ++RA + EKM I + QL E K A+DA ++E AR
Sbjct: 121 DESERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAEDADRKYEEVAR 167
>ref|NP_000357.3| tropomyosin 1 alpha chain isoform 5 [Homo sapiens]
Length = 284
Score = 197 bits (501), Expect = 5e-51
Identities = 106/167 (63%), Positives = 133/167 (79%)
Frame = +1
Query: 67 MEAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVGEELTHLHKKLKGTEDELDLY 246
M+AIKKKMQMLKLDKENA+DRAEQAE+DKKAAE++ KQ+ +EL L KKLKGTEDELD Y
Sbjct: 1 MDAIKKKMQMLKLDKENALDRAEQAEADKKAAEDRSKQLEDELVSLQKKLKGTEDELDKY 60
Query: 247 SENLKDAQE*LELSYMKASDSKGDVAALNQRIQLPQDEKHRSQERLSTALPNLEEAEQAA 426
SE LKDAQE LEL+ KA+D++ DVA+LN+RIQL ++E R+QERL+TAL LEEAE+AA
Sbjct: 61 SEALKDAQEKLELAEKKATDAEADVASLNRRIQLVEEELDRAQERLATALQKLEEAEKAA 120
Query: 427 DATQRRTKVTKTRALYESEKMVIHDKQLAEDKSTADDAYDHFKEAAR 567
D ++R KV ++RA + EKM I + QL E K A+DA ++E AR
Sbjct: 121 DESERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAEDADRKYEEVAR 167
>ref|NP_001018006.1| tropomyosin 1 alpha chain isoform 4 [Homo sapiens]
Length = 284
Score = 197 bits (501), Expect = 5e-51
Identities = 106/167 (63%), Positives = 133/167 (79%)
Frame = +1
Query: 67 MEAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVGEELTHLHKKLKGTEDELDLY 246
M+AIKKKMQMLKLDKENA+DRAEQAE+DKKAAE++ KQ+ +EL L KKLKGTEDELD Y
Sbjct: 1 MDAIKKKMQMLKLDKENALDRAEQAEADKKAAEDRSKQLEDELVSLQKKLKGTEDELDKY 60
Query: 247 SENLKDAQE*LELSYMKASDSKGDVAALNQRIQLPQDEKHRSQERLSTALPNLEEAEQAA 426
SE LKDAQE LEL+ KA+D++ DVA+LN+RIQL ++E R+QERL+TAL LEEAE+AA
Sbjct: 61 SEALKDAQEKLELAEKKATDAEADVASLNRRIQLVEEELDRAQERLATALQKLEEAEKAA 120
Query: 427 DATQRRTKVTKTRALYESEKMVIHDKQLAEDKSTADDAYDHFKEAAR 567
D ++R KV ++RA + EKM I + QL E K A+DA ++E AR
Sbjct: 121 DESERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAEDADRKYEEVAR 167
>ref|NP_001018005.1| tropomyosin 1 alpha chain isoform 1 [Homo sapiens]
Length = 284
Score = 197 bits (501), Expect = 5e-51
Identities = 106/167 (63%), Positives = 133/167 (79%)
Frame = +1
Query: 67 MEAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVGEELTHLHKKLKGTEDELDLY 246
M+AIKKKMQMLKLDKENA+DRAEQAE+DKKAAE++ KQ+ +EL L KKLKGTEDELD Y
Sbjct: 1 MDAIKKKMQMLKLDKENALDRAEQAEADKKAAEDRSKQLEDELVSLQKKLKGTEDELDKY 60
Query: 247 SENLKDAQE*LELSYMKASDSKGDVAALNQRIQLPQDEKHRSQERLSTALPNLEEAEQAA 426
SE LKDAQE LEL+ KA+D++ DVA+LN+RIQL ++E R+QERL+TAL LEEAE+AA
Sbjct: 61 SEALKDAQEKLELAEKKATDAEADVASLNRRIQLVEEELDRAQERLATALQKLEEAEKAA 120
Query: 427 DATQRRTKVTKTRALYESEKMVIHDKQLAEDKSTADDAYDHFKEAAR 567
D ++R KV ++RA + EKM I + QL E K A+DA ++E AR
Sbjct: 121 DESERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAEDADRKYEEVAR 167
>ref|NP_998839.1| tropomyosin 2 (beta) isoform 2 [Homo sapiens]
Length = 284
Score = 191 bits (486), Expect = 3e-49
Identities = 100/167 (59%), Positives = 132/167 (79%)
Frame = +1
Query: 67 MEAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVGEELTHLHKKLKGTEDELDLY 246
M+AIKKKMQMLKLDKENAIDRAEQAE+DKK AE++CKQ+ EE L KKLKGTEDE++ Y
Sbjct: 1 MDAIKKKMQMLKLDKENAIDRAEQAEADKKQAEDRCKQLEEEQQALQKKLKGTEDEVEKY 60
Query: 247 SENLKDAQE*LELSYMKASDSKGDVAALNQRIQLPQDEKHRSQERLSTALPNLEEAEQAA 426
SE++K+AQE LE + KA+D++ DVA+LN+RIQL ++E R+QERL+TAL LEEAE+AA
Sbjct: 61 SESVKEAQEKLEQAEKKATDAEADVASLNRRIQLVEEELDRAQERLATALQKLEEAEKAA 120
Query: 427 DATQRRTKVTKTRALYESEKMVIHDKQLAEDKSTADDAYDHFKEAAR 567
D ++R KV + RA+ + EKM + + QL E K A+D+ ++E AR
Sbjct: 121 DESERGMKVIENRAMKDEEKMELQEMQLKEAKHIAEDSDRKYEEVAR 167
>ref|NP_003280.2| tropomyosin 2 (beta) isoform 1 [Homo sapiens]
Length = 284
Score = 191 bits (486), Expect = 3e-49
Identities = 100/167 (59%), Positives = 132/167 (79%)
Frame = +1
Query: 67 MEAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVGEELTHLHKKLKGTEDELDLY 246
M+AIKKKMQMLKLDKENAIDRAEQAE+DKK AE++CKQ+ EE L KKLKGTEDE++ Y
Sbjct: 1 MDAIKKKMQMLKLDKENAIDRAEQAEADKKQAEDRCKQLEEEQQALQKKLKGTEDEVEKY 60
Query: 247 SENLKDAQE*LELSYMKASDSKGDVAALNQRIQLPQDEKHRSQERLSTALPNLEEAEQAA 426
SE++K+AQE LE + KA+D++ DVA+LN+RIQL ++E R+QERL+TAL LEEAE+AA
Sbjct: 61 SESVKEAQEKLEQAEKKATDAEADVASLNRRIQLVEEELDRAQERLATALQKLEEAEKAA 120
Query: 427 DATQRRTKVTKTRALYESEKMVIHDKQLAEDKSTADDAYDHFKEAAR 567
D ++R KV + RA+ + EKM + + QL E K A+D+ ++E AR
Sbjct: 121 DESERGMKVIENRAMKDEEKMELQEMQLKEAKHIAEDSDRKYEEVAR 167
>ref|NP_001018020.1| tropomyosin 1 alpha chain isoform 7 [Homo sapiens]
Length = 284
Score = 160 bits (405), Expect = 6e-40
Identities = 89/167 (53%), Positives = 121/167 (72%)
Frame = +1
Query: 67 MEAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVGEELTHLHKKLKGTEDELDLY 246
M+AIKKKMQMLKLDKENA+DRAEQAE+DKKAAE++ KQ+ E++ K L+ +EDE D
Sbjct: 1 MDAIKKKMQMLKLDKENALDRAEQAEADKKAAEDRSKQLEEDIAAKEKLLRVSEDERDRV 60
Query: 247 SENLKDAQE*LELSYMKASDSKGDVAALNQRIQLPQDEKHRSQERLSTALPNLEEAEQAA 426
E L A++ L + A+ ++ DVA+LN+RIQL ++E R+QERL+TAL LEEAE+AA
Sbjct: 61 LEELHKAEDSLLAAEEAAAKAEADVASLNRRIQLVEEELDRAQERLATALQKLEEAEKAA 120
Query: 427 DATQRRTKVTKTRALYESEKMVIHDKQLAEDKSTADDAYDHFKEAAR 567
D ++R KV ++RA + EKM I + QL E K A+DA ++E AR
Sbjct: 121 DESERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAEDADRKYEEVAR 167
>ref|NP_001018007.1| tropomyosin 1 alpha chain isoform 2 [Homo sapiens]
Length = 284
Score = 160 bits (405), Expect = 6e-40
Identities = 89/167 (53%), Positives = 121/167 (72%)
Frame = +1
Query: 67 MEAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVGEELTHLHKKLKGTEDELDLY 246
M+AIKKKMQMLKLDKENA+DRAEQAE+DKKAAE++ KQ+ E++ K L+ +EDE D
Sbjct: 1 MDAIKKKMQMLKLDKENALDRAEQAEADKKAAEDRSKQLEEDIAAKEKLLRVSEDERDRV 60
Query: 247 SENLKDAQE*LELSYMKASDSKGDVAALNQRIQLPQDEKHRSQERLSTALPNLEEAEQAA 426
E L A++ L + A+ ++ DVA+LN+RIQL ++E R+QERL+TAL LEEAE+AA
Sbjct: 61 LEELHKAEDSLLAAEEAAAKAEADVASLNRRIQLVEEELDRAQERLATALQKLEEAEKAA 120
Query: 427 DATQRRTKVTKTRALYESEKMVIHDKQLAEDKSTADDAYDHFKEAAR 567
D ++R KV ++RA + EKM I + QL E K A+DA ++E AR
Sbjct: 121 DESERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAEDADRKYEEVAR 167
>ref|NP_689476.1| tropomyosin 3 isoform 1 [Homo sapiens]
Length = 243
Score = 115 bits (288), Expect = 2e-26
Identities = 73/167 (43%), Positives = 98/167 (58%)
Frame = +1
Query: 67 MEAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVGEELTHLHKKLKGTEDELDLY 246
MEAIKKKMQMLKLDKENA+DRAEQAE+++K AEE+ KQ+ EDEL
Sbjct: 2 MEAIKKKMQMLKLDKENALDRAEQAEAEQKQAEERSKQL--------------EDEL--- 44
Query: 247 SENLKDAQE*LELSYMKASDSKGDVAALNQRIQLPQDEKHRSQERLSTALPNLEEAEQAA 426
AA+ ++++ +DE R+QERL+TAL LEEAE+AA
Sbjct: 45 -------------------------AAMQKKLKGTEDELDRAQERLATALQKLEEAEKAA 79
Query: 427 DATQRRTKVTKTRALYESEKMVIHDKQLAEDKSTADDAYDHFKEAAR 567
D ++R KV + RAL + EKM + + QL E K A++A ++E AR
Sbjct: 80 DESERGMKVIENRALKDEEKMELQEIQLKEAKHIAEEADRKYEEVAR 126
>ref|NP_003281.1| tropomyosin 4 [Homo sapiens]
Length = 248
Score = 92.4 bits (228), Expect = 2e-19
Identities = 51/125 (40%), Positives = 79/125 (63%)
Frame = +1
Query: 193 LTHLHKKLKGTEDELDLYSENLKDAQE*LELSYMKASDSKGDVAALNQRIQLPQDEKHRS 372
L + +K++ + + D + + Q L+ + ++GDVAALN+RIQL ++E R+
Sbjct: 7 LEAVKRKIQALQQQADEAEDRAQGLQRELDGERERREKAEGDVAALNRRIQLVEEELDRA 66
Query: 373 QERLSTALPNLEEAEQAADATQRRTKVTKTRALYESEKMVIHDKQLAEDKSTADDAYDHF 552
QERL+TAL LEEAE+AAD ++R KV + RA+ + EKM I + QL E K A++A +
Sbjct: 67 QERLATALQKLEEAEKAADESERGMKVIENRAMKDEEKMEIQEMQLKEAKHIAEEADRKY 126
Query: 553 KEAAR 567
+E AR
Sbjct: 127 EEVAR 131
Score = 51.6 bits (122), Expect = 4e-07
Identities = 30/127 (23%), Positives = 66/127 (51%)
Frame = +1
Query: 64 AMEAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVGEELTHLHKKLKGTEDELDL 243
++EA+K+K+Q L+ + A DRA+ + + E+ ++ ++ L+++++ E+ELD
Sbjct: 6 SLEAVKRKIQALQQQADEAEDRAQGLQRELDGERERREKAEGDVAALNRRIQLVEEELDR 65
Query: 244 YSENLKDAQE*LELSYMKASDSKGDVAALNQRIQLPQDEKHRSQERLSTALPNLEEAEQA 423
E L A + LE + A +S+ + + R +++ + +L A EEA++
Sbjct: 66 AQERLATALQKLEEAEKAADESERGMKVIENRAMKDEEKMEIQEMQLKEAKHIAEEADRK 125
Query: 424 ADATQRR 444
+ R+
Sbjct: 126 YEEVARK 132
Database: RefSeqHP
Posted date: Aug 2, 2006 12:57 AM
Number of letters in database: 17,774,539
Number of sequences in database: 39,411
Lambda K H
0.310 0.124 0.326
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,150,164
Number of Sequences: 39411
Number of extensions: 368906
Number of successful extensions: 1877
Number of sequences better than 1.0e-05: 10
Number of HSP's better than 0.0 without gapping: 1513
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1802
length of database: 17,774,539
effective HSP length: 96
effective length of database: 13,991,083
effective search space used: 1301170719
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
Search to RefSeqCP
BLASTX 2.2.10 [Oct-19-2004]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20060611S-033288
(569 letters)
Database: RefSeqCP
33,732 sequences; 19,266,565 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_866127.1| PREDICTED: similar to tropomyosin 4 isoform 1 i... 222 2e-58
Alignment gi|XP_852641.1| PREDICTED: similar to tropomyosin 1, alpha isof... 222 2e-58
Alignment gi|XP_865307.1| PREDICTED: similar to Tropomyosin 1 alpha chain... 197 5e-51
Alignment gi|XP_865292.1| PREDICTED: similar to tropomyosin 1 alpha chain... 197 5e-51
Alignment gi|XP_535506.2| PREDICTED: similar to tropomyosin 1 alpha chain... 197 5e-51
Alignment gi|XP_865257.1| PREDICTED: similar to tropomyosin 1 alpha chain... 197 5e-51
Alignment gi|XP_864999.1| PREDICTED: similar to tropomyosin 1, alpha isof... 197 5e-51
Alignment gi|XP_864981.1| PREDICTED: similar to tropomyosin 1 alpha chain... 197 5e-51
Alignment gi|XP_864907.1| PREDICTED: similar to Tropomyosin 1 alpha chain... 197 5e-51
Alignment gi|XP_864888.1| PREDICTED: similar to Tropomyosin 1 alpha chain... 197 5e-51
>ref|XP_866127.1| PREDICTED: similar to tropomyosin 4 isoform 1 isoform 5 [Canis
familiaris]
Length = 284
Score = 222 bits (566), Expect = 2e-58
Identities = 119/167 (71%), Positives = 138/167 (82%)
Frame = +1
Query: 67 MEAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVGEELTHLHKKLKGTEDELDLY 246
MEAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQV EELTHL KKLKGTEDELD Y
Sbjct: 1 MEAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLKGTEDELDKY 60
Query: 247 SENLKDAQE*LELSYMKASDSKGDVAALNQRIQLPQDEKHRSQERLSTALPNLEEAEQAA 426
SENLKDAQE LEL+ KASD++GDVAALN+RIQL ++E R+QERL+TAL LEEAE+AA
Sbjct: 61 SENLKDAQEKLELTEKKASDAEGDVAALNRRIQLVEEELDRAQERLATALQKLEEAEKAA 120
Query: 427 DATQRRTKVTKTRALYESEKMVIHDKQLAEDKSTADDAYDHFKEAAR 567
D ++R KV + RA+ + EKM I + QL E K A++A ++E AR
Sbjct: 121 DESERGMKVIENRAMKDEEKMEIQEMQLKEAKHIAEEADRKYEEVAR 167
>ref|XP_852641.1| PREDICTED: similar to tropomyosin 1, alpha isoform 2 [Canis
familiaris]
Length = 284
Score = 222 bits (566), Expect = 2e-58
Identities = 119/167 (71%), Positives = 138/167 (82%)
Frame = +1
Query: 67 MEAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVGEELTHLHKKLKGTEDELDLY 246
MEAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQV EELTHL KKLKGTEDELD Y
Sbjct: 1 MEAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLKGTEDELDKY 60
Query: 247 SENLKDAQE*LELSYMKASDSKGDVAALNQRIQLPQDEKHRSQERLSTALPNLEEAEQAA 426
SENLKDAQE LEL+ KASD++GDVAALN+RIQL ++E R+QERL+TAL LEEAE+AA
Sbjct: 61 SENLKDAQEKLELTEKKASDAEGDVAALNRRIQLVEEELDRAQERLATALQKLEEAEKAA 120
Query: 427 DATQRRTKVTKTRALYESEKMVIHDKQLAEDKSTADDAYDHFKEAAR 567
D ++R KV + RA+ + EKM I + QL E K A++A ++E AR
Sbjct: 121 DESERGMKVIENRAMKDEEKMEIQEMQLKEAKHIAEEADRKYEEVAR 167
>ref|XP_865307.1| PREDICTED: similar to Tropomyosin 1 alpha chain (Alpha-tropomyosin)
isoform 26 [Canis familiaris]
Length = 284
Score = 197 bits (501), Expect = 5e-51
Identities = 106/167 (63%), Positives = 133/167 (79%)
Frame = +1
Query: 67 MEAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVGEELTHLHKKLKGTEDELDLY 246
M+AIKKKMQMLKLDKENA+DRAEQAE+DKKAAE++ KQ+ +EL L KKLKGTEDELD Y
Sbjct: 1 MDAIKKKMQMLKLDKENALDRAEQAEADKKAAEDRSKQLEDELVSLQKKLKGTEDELDKY 60
Query: 247 SENLKDAQE*LELSYMKASDSKGDVAALNQRIQLPQDEKHRSQERLSTALPNLEEAEQAA 426
SE LKDAQE LEL+ KA+D++ DVA+LN+RIQL ++E R+QERL+TAL LEEAE+AA
Sbjct: 61 SEALKDAQEKLELAEKKATDAEADVASLNRRIQLVEEELDRAQERLATALQKLEEAEKAA 120
Query: 427 DATQRRTKVTKTRALYESEKMVIHDKQLAEDKSTADDAYDHFKEAAR 567
D ++R KV ++RA + EKM I + QL E K A+DA ++E AR
Sbjct: 121 DESERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAEDADRKYEEVAR 167
>ref|XP_865292.1| PREDICTED: similar to tropomyosin 1 alpha chain isoform 5 isoform
25 [Canis familiaris]
Length = 218
Score = 197 bits (501), Expect = 5e-51
Identities = 106/167 (63%), Positives = 133/167 (79%)
Frame = +1
Query: 67 MEAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVGEELTHLHKKLKGTEDELDLY 246
M+AIKKKMQMLKLDKENA+DRAEQAE+DKKAAE++ KQ+ +EL L KKLKGTEDELD Y
Sbjct: 1 MDAIKKKMQMLKLDKENALDRAEQAEADKKAAEDRSKQLEDELVSLQKKLKGTEDELDKY 60
Query: 247 SENLKDAQE*LELSYMKASDSKGDVAALNQRIQLPQDEKHRSQERLSTALPNLEEAEQAA 426
SE LKDAQE LEL+ KA+D++ DVA+LN+RIQL ++E R+QERL+TAL LEEAE+AA
Sbjct: 61 SEALKDAQEKLELAEKKATDAEADVASLNRRIQLVEEELDRAQERLATALQKLEEAEKAA 120
Query: 427 DATQRRTKVTKTRALYESEKMVIHDKQLAEDKSTADDAYDHFKEAAR 567
D ++R KV ++RA + EKM I + QL E K A+DA ++E AR
Sbjct: 121 DESERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAEDADRKYEEVAR 167
>ref|XP_535506.2| PREDICTED: similar to tropomyosin 1 alpha chain isoform 5 isoform 1
[Canis familiaris]
Length = 284
Score = 197 bits (501), Expect = 5e-51
Identities = 106/167 (63%), Positives = 133/167 (79%)
Frame = +1
Query: 67 MEAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVGEELTHLHKKLKGTEDELDLY 246
M+AIKKKMQMLKLDKENA+DRAEQAE+DKKAAE++ KQ+ +EL L KKLKGTEDELD Y
Sbjct: 1 MDAIKKKMQMLKLDKENALDRAEQAEADKKAAEDRSKQLEDELVSLQKKLKGTEDELDKY 60
Query: 247 SENLKDAQE*LELSYMKASDSKGDVAALNQRIQLPQDEKHRSQERLSTALPNLEEAEQAA 426
SE LKDAQE LEL+ KA+D++ DVA+LN+RIQL ++E R+QERL+TAL LEEAE+AA
Sbjct: 61 SEALKDAQEKLELAEKKATDAEADVASLNRRIQLVEEELDRAQERLATALQKLEEAEKAA 120
Query: 427 DATQRRTKVTKTRALYESEKMVIHDKQLAEDKSTADDAYDHFKEAAR 567
D ++R KV ++RA + EKM I + QL E K A+DA ++E AR
Sbjct: 121 DESERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAEDADRKYEEVAR 167
>ref|XP_865257.1| PREDICTED: similar to tropomyosin 1 alpha chain isoform 5 isoform
24 [Canis familiaris]
Length = 284
Score = 197 bits (501), Expect = 5e-51
Identities = 106/167 (63%), Positives = 133/167 (79%)
Frame = +1
Query: 67 MEAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVGEELTHLHKKLKGTEDELDLY 246
M+AIKKKMQMLKLDKENA+DRAEQAE+DKKAAE++ KQ+ +EL L KKLKGTEDELD Y
Sbjct: 1 MDAIKKKMQMLKLDKENALDRAEQAEADKKAAEDRSKQLEDELVSLQKKLKGTEDELDKY 60
Query: 247 SENLKDAQE*LELSYMKASDSKGDVAALNQRIQLPQDEKHRSQERLSTALPNLEEAEQAA 426
SE LKDAQE LEL+ KA+D++ DVA+LN+RIQL ++E R+QERL+TAL LEEAE+AA
Sbjct: 61 SEALKDAQEKLELAEKKATDAEADVASLNRRIQLVEEELDRAQERLATALQKLEEAEKAA 120
Query: 427 DATQRRTKVTKTRALYESEKMVIHDKQLAEDKSTADDAYDHFKEAAR 567
D ++R KV ++RA + EKM I + QL E K A+DA ++E AR
Sbjct: 121 DESERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAEDADRKYEEVAR 167
>ref|XP_864999.1| PREDICTED: similar to tropomyosin 1, alpha isoform 11 [Canis
familiaris]
Length = 284
Score = 197 bits (501), Expect = 5e-51
Identities = 106/167 (63%), Positives = 133/167 (79%)
Frame = +1
Query: 67 MEAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVGEELTHLHKKLKGTEDELDLY 246
M+AIKKKMQMLKLDKENA+DRAEQAE+DKKAAE++ KQ+ +EL L KKLKGTEDELD Y
Sbjct: 1 MDAIKKKMQMLKLDKENALDRAEQAEADKKAAEDRSKQLEDELVSLQKKLKGTEDELDKY 60
Query: 247 SENLKDAQE*LELSYMKASDSKGDVAALNQRIQLPQDEKHRSQERLSTALPNLEEAEQAA 426
SE LKDAQE LEL+ KA+D++ DVA+LN+RIQL ++E R+QERL+TAL LEEAE+AA
Sbjct: 61 SEALKDAQEKLELAEKKATDAEADVASLNRRIQLVEEELDRAQERLATALQKLEEAEKAA 120
Query: 427 DATQRRTKVTKTRALYESEKMVIHDKQLAEDKSTADDAYDHFKEAAR 567
D ++R KV ++RA + EKM I + QL E K A+DA ++E AR
Sbjct: 121 DESERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAEDADRKYEEVAR 167
>ref|XP_864981.1| PREDICTED: similar to tropomyosin 1 alpha chain isoform 4 isoform
10 [Canis familiaris]
Length = 284
Score = 197 bits (501), Expect = 5e-51
Identities = 106/167 (63%), Positives = 133/167 (79%)
Frame = +1
Query: 67 MEAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVGEELTHLHKKLKGTEDELDLY 246
M+AIKKKMQMLKLDKENA+DRAEQAE+DKKAAE++ KQ+ +EL L KKLKGTEDELD Y
Sbjct: 1 MDAIKKKMQMLKLDKENALDRAEQAEADKKAAEDRSKQLEDELVSLQKKLKGTEDELDKY 60
Query: 247 SENLKDAQE*LELSYMKASDSKGDVAALNQRIQLPQDEKHRSQERLSTALPNLEEAEQAA 426
SE LKDAQE LEL+ KA+D++ DVA+LN+RIQL ++E R+QERL+TAL LEEAE+AA
Sbjct: 61 SEALKDAQEKLELAEKKATDAEADVASLNRRIQLVEEELDRAQERLATALQKLEEAEKAA 120
Query: 427 DATQRRTKVTKTRALYESEKMVIHDKQLAEDKSTADDAYDHFKEAAR 567
D ++R KV ++RA + EKM I + QL E K A+DA ++E AR
Sbjct: 121 DESERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAEDADRKYEEVAR 167
>ref|XP_864907.1| PREDICTED: similar to Tropomyosin 1 alpha chain (Alpha-tropomyosin)
isoform 6 [Canis familiaris]
Length = 284
Score = 197 bits (501), Expect = 5e-51
Identities = 106/167 (63%), Positives = 133/167 (79%)
Frame = +1
Query: 67 MEAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVGEELTHLHKKLKGTEDELDLY 246
M+AIKKKMQMLKLDKENA+DRAEQAE+DKKAAE++ KQ+ +EL L KKLKGTEDELD Y
Sbjct: 1 MDAIKKKMQMLKLDKENALDRAEQAEADKKAAEDRSKQLEDELVSLQKKLKGTEDELDKY 60
Query: 247 SENLKDAQE*LELSYMKASDSKGDVAALNQRIQLPQDEKHRSQERLSTALPNLEEAEQAA 426
SE LKDAQE LEL+ KA+D++ DVA+LN+RIQL ++E R+QERL+TAL LEEAE+AA
Sbjct: 61 SEALKDAQEKLELAEKKATDAEADVASLNRRIQLVEEELDRAQERLATALQKLEEAEKAA 120
Query: 427 DATQRRTKVTKTRALYESEKMVIHDKQLAEDKSTADDAYDHFKEAAR 567
D ++R KV ++RA + EKM I + QL E K A+DA ++E AR
Sbjct: 121 DESERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAEDADRKYEEVAR 167
>ref|XP_864888.1| PREDICTED: similar to Tropomyosin 1 alpha chain (Alpha-tropomyosin)
isoform 5 [Canis familiaris]
Length = 281
Score = 197 bits (501), Expect = 5e-51
Identities = 106/167 (63%), Positives = 133/167 (79%)
Frame = +1
Query: 67 MEAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVGEELTHLHKKLKGTEDELDLY 246
M+AIKKKMQMLKLDKENA+DRAEQAE+DKKAAE++ KQ+ +EL L KKLKGTEDELD Y
Sbjct: 1 MDAIKKKMQMLKLDKENALDRAEQAEADKKAAEDRSKQLEDELVSLQKKLKGTEDELDKY 60
Query: 247 SENLKDAQE*LELSYMKASDSKGDVAALNQRIQLPQDEKHRSQERLSTALPNLEEAEQAA 426
SE LKDAQE LEL+ KA+D++ DVA+LN+RIQL ++E R+QERL+TAL LEEAE+AA
Sbjct: 61 SEALKDAQEKLELAEKKATDAEADVASLNRRIQLVEEELDRAQERLATALQKLEEAEKAA 120
Query: 427 DATQRRTKVTKTRALYESEKMVIHDKQLAEDKSTADDAYDHFKEAAR 567
D ++R KV ++RA + EKM I + QL E K A+DA ++E AR
Sbjct: 121 DESERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAEDADRKYEEVAR 167
Database: RefSeqCP
Posted date: Aug 1, 2006 9:25 PM
Number of letters in database: 19,266,565
Number of sequences in database: 33,732
Lambda K H
0.310 0.124 0.326
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,800,863
Number of Sequences: 33732
Number of extensions: 377059
Number of successful extensions: 2733
Number of sequences better than 1.0e-05: 10
Number of HSP's better than 0.0 without gapping: 1730
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2413
length of database: 19,266,565
effective HSP length: 97
effective length of database: 15,994,561
effective search space used: 1471499612
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
Search to RefSeqMP
BLASTX 2.2.10 [Oct-19-2004]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20060611S-033288
(569 letters)
Database: RefSeqMP
45,328 sequences; 21,768,885 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_077745.2| tropomyosin 1, alpha [Mus musculus] 197 6e-51
Alignment gi|NP_033442.2| tropomyosin 2, beta [Mus musculus] 193 1e-49
Alignment gi|NP_071709.2| tropomyosin 3, gamma [Mus musculus] 190 9e-49
Alignment gi|NP_001001491.1| tropomyosin 4 [Mus musculus] 90 2e-18
>ref|NP_077745.2| tropomyosin 1, alpha [Mus musculus]
Length = 284
Score = 197 bits (501), Expect = 6e-51
Identities = 106/167 (63%), Positives = 133/167 (79%)
Frame = +1
Query: 67 MEAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVGEELTHLHKKLKGTEDELDLY 246
M+AIKKKMQMLKLDKENA+DRAEQAE+DKKAAE++ KQ+ +EL L KKLKGTEDELD Y
Sbjct: 1 MDAIKKKMQMLKLDKENALDRAEQAEADKKAAEDRSKQLEDELVSLQKKLKGTEDELDKY 60
Query: 247 SENLKDAQE*LELSYMKASDSKGDVAALNQRIQLPQDEKHRSQERLSTALPNLEEAEQAA 426
SE LKDAQE LEL+ KA+D++ DVA+LN+RIQL ++E R+QERL+TAL LEEAE+AA
Sbjct: 61 SEALKDAQEKLELAEKKATDAEADVASLNRRIQLVEEELDRAQERLATALQKLEEAEKAA 120
Query: 427 DATQRRTKVTKTRALYESEKMVIHDKQLAEDKSTADDAYDHFKEAAR 567
D ++R KV ++RA + EKM I + QL E K A+DA ++E AR
Sbjct: 121 DESERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAEDADRKYEEVAR 167
>ref|NP_033442.2| tropomyosin 2, beta [Mus musculus]
Length = 284
Score = 193 bits (490), Expect = 1e-49
Identities = 101/167 (60%), Positives = 132/167 (79%)
Frame = +1
Query: 67 MEAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVGEELTHLHKKLKGTEDELDLY 246
M+AIKKKMQMLKLDKENAIDRAEQAE+DKK AE++CKQ+ EE L KKLKGTEDE++ Y
Sbjct: 1 MDAIKKKMQMLKLDKENAIDRAEQAEADKKQAEDRCKQLEEEQQALQKKLKGTEDEVEKY 60
Query: 247 SENLKDAQE*LELSYMKASDSKGDVAALNQRIQLPQDEKHRSQERLSTALPNLEEAEQAA 426
SE++KDAQE LE + KA+D++ DVA+LN+RIQL ++E R+QERL+TAL LEEAE+AA
Sbjct: 61 SESVKDAQEKLEQAEKKATDAEADVASLNRRIQLVEEELDRAQERLATALQKLEEAEKAA 120
Query: 427 DATQRRTKVTKTRALYESEKMVIHDKQLAEDKSTADDAYDHFKEAAR 567
D ++R KV + RA+ + EKM + + QL E K A+D+ ++E AR
Sbjct: 121 DESERGMKVIENRAMKDEEKMELQEMQLKEAKHIAEDSDRKYEEVAR 167
>ref|NP_071709.2| tropomyosin 3, gamma [Mus musculus]
Length = 284
Score = 190 bits (482), Expect = 9e-49
Identities = 101/167 (60%), Positives = 131/167 (78%)
Frame = +1
Query: 67 MEAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVGEELTHLHKKLKGTEDELDLY 246
MEAIKKKMQMLKLDKEN +DRAEQAE+++K AEE+ KQ+ +EL + KKLKGTEDELD Y
Sbjct: 1 MEAIKKKMQMLKLDKENVLDRAEQAEAEQKQAEERSKQLEDELATMQKKLKGTEDELDKY 60
Query: 247 SENLKDAQE*LELSYMKASDSKGDVAALNQRIQLPQDEKHRSQERLSTALPNLEEAEQAA 426
SE LKDAQE LEL+ KA+D++ +VA+LN+RIQL ++E R+QERL+TAL LEEAE+AA
Sbjct: 61 SEALKDAQEKLELAEKKAADAEAEVASLNRRIQLVEEELDRAQERLATALQKLEEAEKAA 120
Query: 427 DATQRRTKVTKTRALYESEKMVIHDKQLAEDKSTADDAYDHFKEAAR 567
D ++R KV + RAL + EKM + + QL E K A++A ++E AR
Sbjct: 121 DESERGMKVIENRALKDEEKMELQEIQLKEAKHIAEEADRKYEEVAR 167
>ref|NP_001001491.1| tropomyosin 4 [Mus musculus]
Length = 248
Score = 89.7 bits (221), Expect = 2e-18
Identities = 50/125 (40%), Positives = 78/125 (62%)
Frame = +1
Query: 193 LTHLHKKLKGTEDELDLYSENLKDAQE*LELSYMKASDSKGDVAALNQRIQLPQDEKHRS 372
L + +K++ + + D + + Q L+ + ++GD AALN+RIQL ++E R+
Sbjct: 7 LEAVKRKIQALQQQADDAEDRAQGLQRELDGERERREKAEGDAAALNRRIQLLEEELDRA 66
Query: 373 QERLSTALPNLEEAEQAADATQRRTKVTKTRALYESEKMVIHDKQLAEDKSTADDAYDHF 552
QE+L+TAL NLEEAE+AAD ++R KV + RA+ + EKM I + QL E K D+A +
Sbjct: 67 QEQLATALQNLEEAEKAADESERGMKVIENRAMKDEEKMEILEMQLKEAKHITDEADRKY 126
Query: 553 KEAAR 567
+E AR
Sbjct: 127 EEVAR 131
Score = 49.7 bits (117), Expect = 2e-06
Identities = 33/141 (23%), Positives = 70/141 (49%), Gaps = 1/141 (0%)
Frame = +1
Query: 64 AMEAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVGEELTHLHKKLKGTEDELDL 243
++EA+K+K+Q L+ ++A DRA+ + + E+ ++ + L+++++ E+ELD
Sbjct: 6 SLEAVKRKIQALQQQADDAEDRAQGLQRELDGERERREKAEGDAAALNRRIQLLEEELDR 65
Query: 244 YSENLKDAQE*LELSYMKASDSKGDVAALNQRIQLPQDEKHRSQERLSTALPNLEEAEQA 423
E L A + LE + A +S+ + + R + +E++ L+EA+
Sbjct: 66 AQEQLATALQNLEEAEKAADESERGMKVIENRAM-------KDEEKMEILEMQLKEAKHI 118
Query: 424 ADATQRR-TKVTKTRALYESE 483
D R+ +V + + E E
Sbjct: 119 TDEADRKYEEVARKLVILEGE 139
Database: RefSeqMP
Posted date: Aug 2, 2006 12:58 AM
Number of letters in database: 21,768,885
Number of sequences in database: 45,328
Lambda K H
0.310 0.124 0.326
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,210,675
Number of Sequences: 45328
Number of extensions: 426200
Number of successful extensions: 2320
Number of sequences better than 1.0e-05: 4
Number of HSP's better than 0.0 without gapping: 1849
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2251
length of database: 21,768,885
effective HSP length: 97
effective length of database: 17,372,069
effective search space used: 1598230348
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)