BLASTX 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= 20060611S-037016 (720 letters) Database: RefSeqSP 1040 sequences; 434,620 total letters Searching...done ***** No hits found ****** Database: RefSeqSP Posted date: Aug 1, 2006 7:14 PM Number of letters in database: 434,620 Number of sequences in database: 1040 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 848,879 Number of Sequences: 1040 Number of extensions: 27363 Number of successful extensions: 151 Number of sequences better than 1.0e-05: 0 Number of HSP's better than 0.0 without gapping: 97 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 144 length of database: 434,620 effective HSP length: 74 effective length of database: 357,660 effective search space used: 59013900 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
Search to RefSeqBP
BLASTX 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= 20060611S-037016 (720 letters) Database: RefSeqBP 33,508 sequences; 16,112,626 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Alignment gi|NP_001029206.1| glyceraldehyde-3-phosphate dehydrogenase [Bo... 108 5e-24 Alignment gi|XP_614369.2| PREDICTED: similar to Receptor-type tyrosine-pr... 104 6e-23 Alignment gi|XP_871774.1| PREDICTED: similar to Glyceraldehyde-3-phosphat... 82 1e-21 Alignment gi|XP_875044.1| PREDICTED: similar to Glyceraldehyde-3-phosphat... 99 3e-21 Alignment gi|XP_610741.2| PREDICTED: similar to Glyceraldehyde-3-phosphat... 72 3e-13 >ref|NP_001029206.1| glyceraldehyde-3-phosphate dehydrogenase [Bos taurus] Length = 333 Score = 108 bits (269), Expect = 5e-24 Identities = 70/137 (51%), Positives = 79/137 (57%), Gaps = 4/137 (2%) Frame = +3 Query: 72 MVKVGVNGFGRIGRLVTRAAFNSGKVDIVAINDPFIDLHYMVYMVQYDSPR-EVPGTVKG 248 MVKVGVNGFGRIGRLVTRAAFNSGKVDIVAINDPFIDLHYMVYM QYDS + GTVK Sbjct: 1 MVKVGVNGFGRIGRLVTRAAFNSGKVDIVAINDPFIDLHYMVYMFQYDSTHGKFNGTVKA 60 Query: 249 KTGSLP-QWEGLTLSRSGIPPNQR-GESGGPLVWGVPGGFPNXXXXXXXXXXXXXXV-NS 419 + G L + +T+ + P N + G++G V G F V S Sbjct: 61 ENGKLVINGKAITIFQERDPANIKWGDAGAEYVVESTGVFTTMEKAGAHLKGGAKRVIIS 120 Query: 420 RPLLRMPPVV*GGGHRK 470 P P V G H K Sbjct: 121 APSADAPMFVMGVNHEK 137 Score = 51.6 bits (122), Expect = 6e-07 Identities = 45/127 (35%), Positives = 58/127 (45%), Gaps = 2/127 (1%) Frame = +2 Query: 242 QGENGKLASMGRPHP-FPERNPPKSKGGERGPLSLGSPWGL-PKQEKGGAPLKGGAKRG* 415 + ENGKL G+ F ER+P K G+ G + G+ EK GA LKGGAKR Sbjct: 59 KAENGKLVINGKAITIFQERDPANIKWGDAGAEYVVESTGVFTTMEKAGAHLKGGAKRVI 118 Query: 416 FSAPFANAPGCVRGGTPENSDTPPKMRQ*APAPPKVLAPRGEGVL*TLSILRGRTMNTGW 595 SAP A+AP V G E + K+ A LAP + + I+ G M T Sbjct: 119 ISAPSADAPMFVMGVNHEKYNNTLKIVSNASCTTNCLAPLAKVIHDHFGIVEG-LMTTVH 177 Query: 596 VLFGPQK 616 + QK Sbjct: 178 AITATQK 184 >ref|XP_614369.2| PREDICTED: similar to Receptor-type tyrosine-protein phosphatase-like N precursor (R-PTP-N) (PTP IA-2) (Islet cell antigen 512) (ICA 512) (Islet cell autoantigen 3) [Bos taurus] Length = 836 Score = 104 bits (260), Expect = 6e-23 Identities = 70/159 (44%), Positives = 82/159 (51%), Gaps = 4/159 (2%) Frame = +3 Query: 72 MVKVGVNGFGRIGRLVTRAAFNSGKVDIVAINDPFIDLHYMVYMVQYDSPR-EVPGTVKG 248 MVKVGVNGFG IGRLVTRAAFNSGKVD+VAINDPFIDLHY+VYM QYD+ + GTVK Sbjct: 1 MVKVGVNGFGHIGRLVTRAAFNSGKVDVVAINDPFIDLHYIVYMFQYDTTHGKFHGTVKA 60 Query: 249 KTGSL-PQWEGLTLSRSGIPPNQR-GESGGPLVWGVPGGFPNXXXXXXXXXXXXXXV-NS 419 + G L + +T+ + P N + G++G V G F V S Sbjct: 61 ENGKLIINGKAVTIFQERDPANIKWGDAGAEYVVETTGVFTTMEKAGAHLKGGAKSVIIS 120 Query: 420 RPLLRMPPVV*GGGHRKIVTXXXXXXXXXXXXQKFWHPG 536 P P V G H K K WH G Sbjct: 121 APSADAPMFVLGMNHEK-YNNNLKIKTVDGPSGKLWHDG 158 >ref|XP_871774.1| PREDICTED: similar to Glyceraldehyde-3-phosphate dehydrogenase, liver (GAPDH) [Bos taurus] Length = 242 Score = 82.4 bits (202), Expect(2) = 1e-21 Identities = 39/53 (73%), Positives = 43/53 (81%) Frame = +3 Query: 87 VNGFGRIGRLVTRAAFNSGKVDIVAINDPFIDLHYMVYMVQYDSPREVPGTVK 245 +NGFGRIG VTRAAFNSG VDI+ INDPFIDLHYMVYM QYDS + P +K Sbjct: 1 MNGFGRIGHPVTRAAFNSGNVDIITINDPFIDLHYMVYMFQYDSTHD-PANIK 52 Score = 38.9 bits (89), Expect(2) = 1e-21 Identities = 25/54 (46%), Positives = 29/54 (53%), Gaps = 1/54 (1%) Frame = +2 Query: 299 NPPKSKGGERGPLSLGSPWGL-PKQEKGGAPLKGGAKRG*FSAPFANAPGCVRG 457 +P K G+ G + G+ EK GA LKGGAKR SAP ANAP V G Sbjct: 47 DPANIKWGDAGAEYMVESTGVFTTMEKAGAHLKGGAKRVIISAPSANAPKFVMG 100 >ref|XP_875044.1| PREDICTED: similar to Glyceraldehyde-3-phosphate dehydrogenase, liver (GAPDH) [Bos taurus] Length = 191 Score = 99.0 bits (245), Expect = 3e-21 Identities = 57/100 (57%), Positives = 68/100 (68%), Gaps = 3/100 (3%) Frame = +3 Query: 72 MVKVGVNGFGRIGRLVTRAAFNSGKVDIVAINDPFIDLHYMVYMVQYDSPR-EVPGTVKG 248 MVKV V GFGRIGRLVTRAAFNSGKVDIV INDPFIDLHYM+YM QYDS + GTVK Sbjct: 1 MVKVRVKGFGRIGRLVTRAAFNSGKVDIVTINDPFIDLHYMIYMFQYDSTHGKFHGTVKA 60 Query: 249 KTGSL-PQWEGLTLSRSGIPPNQR-GESGGPLVWGVPGGF 362 + G L + +T+ + P + + G++G V G F Sbjct: 61 ENGKLIINGKAITIFQERDPASIKWGDAGAEYVMESTGVF 100 Score = 47.8 bits (112), Expect = 8e-06 Identities = 39/113 (34%), Positives = 51/113 (45%), Gaps = 2/113 (1%) Frame = +2 Query: 242 QGENGKLASMGRPHP-FPERNPPKSKGGERGPLSLGSPWGL-PKQEKGGAPLKGGAKRG* 415 + ENGKL G+ F ER+P K G+ G + G+ EK GA LKGG KR Sbjct: 59 KAENGKLIINGKAITIFQERDPASIKWGDAGAEYVMESTGVFTTMEKAGAHLKGGTKRVI 118 Query: 416 FSAPFANAPGCVRGGTPENSDTPPKMRQ*APAPPKVLAPRGEGVL*TLSILRG 574 S P A+AP V G E + K+ A LAP + + I+ G Sbjct: 119 ISVPSADAPMFVMGLNHEKYNNTLKIVSDASCTTNCLAPLAKVIHDHFGIMEG 171 >ref|XP_610741.2| PREDICTED: similar to Glyceraldehyde-3-phosphate dehydrogenase, testis-specific (Spermatogenic cell-specific glyceraldehyde 3-phosphate dehydrogenase 2) (GAPDH-2) (HSD-35) [Bos taurus] Length = 403 Score = 72.4 bits (176), Expect = 3e-13 Identities = 38/62 (61%), Positives = 43/62 (69%), Gaps = 1/62 (1%) Frame = +3 Query: 81 VGVNGFGRIGRLVTRAAFNSGKVDIVAINDPFIDLHYMVYMVQYDSPR-EVPGTVKGKTG 257 VG+NGFGRIGRLV RA G V +VA+NDPFIDL YMVYM +YDS G V+ K G Sbjct: 73 VGINGFGRIGRLVLRACMEKG-VKVVAVNDPFIDLEYMVYMFKYDSTHGRYKGNVEHKKG 131 Query: 258 SL 263 L Sbjct: 132 QL 133 Database: RefSeqBP Posted date: Aug 1, 2006 7:14 PM Number of letters in database: 16,112,626 Number of sequences in database: 33,508 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 32,923,692 Number of Sequences: 33508 Number of extensions: 1131740 Number of successful extensions: 5674 Number of sequences better than 1.0e-05: 5 Number of HSP's better than 0.0 without gapping: 3780 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5544 length of database: 16,112,626 effective HSP length: 98 effective length of database: 12,828,842 effective search space used: 1808866722 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
Search to RefSeqHP
BLASTX 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= 20060611S-037016 (720 letters) Database: RefSeqHP 39,411 sequences; 17,774,539 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Alignment gi|NP_002037.2| glyceraldehyde-3-phosphate dehydrogenase [Homo ... 101 1e-32 Alignment gi|NP_055179.1| glyceraldehyde-3-phosphate dehydrogenase, sperm... 69 4e-12 >ref|NP_002037.2| glyceraldehyde-3-phosphate dehydrogenase [Homo sapiens] Length = 335 Score = 101 bits (251), Expect(2) = 1e-32 Identities = 52/64 (81%), Positives = 55/64 (85%), Gaps = 1/64 (1%) Frame = +3 Query: 75 VKVGVNGFGRIGRLVTRAAFNSGKVDIVAINDPFIDLHYMVYMVQYDSPR-EVPGTVKGK 251 VKVGVNGFGRIGRLVTRAAFNSGKVDIVAINDPFIDL+YMVYM QYDS + GTVK + Sbjct: 4 VKVGVNGFGRIGRLVTRAAFNSGKVDIVAINDPFIDLNYMVYMFQYDSTHGKFHGTVKAE 63 Query: 252 TGSL 263 G L Sbjct: 64 NGKL 67 Score = 57.0 bits (136), Expect(2) = 1e-32 Identities = 47/127 (37%), Positives = 59/127 (46%), Gaps = 2/127 (1%) Frame = +2 Query: 242 QGENGKLASMGRPHP-FPERNPPKSKGGERGPLSLGSPWGL-PKQEKGGAPLKGGAKRG* 415 + ENGKL G P F ER+P K K G+ G + G+ EK GA L+GGAKR Sbjct: 61 KAENGKLVINGNPITIFQERDPSKIKWGDAGAEYVVESTGVFTTMEKAGAHLQGGAKRVI 120 Query: 416 FSAPFANAPGCVRGGTPENSDTPPKMRQ*APAPPKVLAPRGEGVL*TLSILRGRTMNTGW 595 SAP A+AP V G E D K+ A LAP + + I+ G M T Sbjct: 121 ISAPSADAPMFVMGVNHEKYDNSLKIISNASCTTNCLAPLAKVIHDNFGIVEG-LMTTVH 179 Query: 596 VLFGPQK 616 + QK Sbjct: 180 AITATQK 186 >ref|NP_055179.1| glyceraldehyde-3-phosphate dehydrogenase, spermatogenic [Homo sapiens] Length = 408 Score = 68.9 bits (167), Expect = 4e-12 Identities = 36/62 (58%), Positives = 43/62 (69%), Gaps = 1/62 (1%) Frame = +3 Query: 81 VGVNGFGRIGRLVTRAAFNSGKVDIVAINDPFIDLHYMVYMVQYDSPR-EVPGTVKGKTG 257 VG+NGFGRIGRLV RA G V +VA+NDPFID YMVYM +YDS G+V+ + G Sbjct: 78 VGINGFGRIGRLVLRACMEKG-VKVVAVNDPFIDPEYMVYMFKYDSTHGRYKGSVEFRNG 136 Query: 258 SL 263 L Sbjct: 137 QL 138 Database: RefSeqHP Posted date: Aug 2, 2006 12:57 AM Number of letters in database: 17,774,539 Number of sequences in database: 39,411 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 37,746,165 Number of Sequences: 39411 Number of extensions: 1362379 Number of successful extensions: 6901 Number of sequences better than 1.0e-05: 2 Number of HSP's better than 0.0 without gapping: 4263 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 6747 length of database: 17,774,539 effective HSP length: 99 effective length of database: 13,872,850 effective search space used: 1942199000 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
Search to RefSeqMP
BLASTX 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= 20060611S-037016 (720 letters) Database: RefSeqMP 45,328 sequences; 21,768,885 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Alignment gi|XP_998786.1| PREDICTED: similar to Glyceraldehyde-3-phosphat... 85 1e-26 Alignment gi|XP_001002772.1| PREDICTED: similar to Glyceraldehyde-3-phosp... 85 1e-26 Alignment gi|XP_899549.1| PREDICTED: similar to Glyceraldehyde-3-phosphat... 85 1e-26 Alignment gi|NP_955766.1| glyceraldehyde-3-phosphate dehydrogenase (phosp... 85 1e-24 Alignment gi|XP_922387.2| PREDICTED: similar to Glyceraldehyde-3-phosphat... 110 1e-24 Alignment gi|XP_988596.1| PREDICTED: similar to Glyceraldehyde-3-phosphat... 78 5e-24 Alignment gi|XP_001004821.1| PREDICTED: similar to Glyceraldehyde-3-phosp... 78 5e-24 Alignment gi|XP_995982.1| PREDICTED: similar to Glyceraldehyde-3-phosphat... 77 2e-23 Alignment gi|XP_920080.2| PREDICTED: similar to Glyceraldehyde-3-phosphat... 77 2e-23 Alignment gi|XP_986001.1| PREDICTED: similar to Glyceraldehyde-3-phosphat... 77 2e-23 >ref|XP_998786.1| PREDICTED: similar to Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) [Mus musculus] Length = 335 Score = 84.7 bits (208), Expect(2) = 1e-26 Identities = 48/67 (71%), Positives = 52/67 (77%), Gaps = 3/67 (4%) Frame = +3 Query: 72 MVKVGVNGFGRIGRLVTRAAFNS--GKVDIVAINDPFIDLHYMVYMVQYDSPR-EVPGTV 242 MVKVGVNGFGRIGRLVTRAA S GKV+IVAINDPFIDL+YMVYM Q DS + TV Sbjct: 1 MVKVGVNGFGRIGRLVTRAAVCSPLGKVEIVAINDPFIDLNYMVYMFQSDSTHGKFNSTV 60 Query: 243 KGKTGSL 263 K + G L Sbjct: 61 KAENGKL 67 Score = 53.9 bits (128), Expect(2) = 1e-26 Identities = 46/136 (33%), Positives = 58/136 (42%), Gaps = 8/136 (5%) Frame = +2 Query: 242 QGENGKLASMGRPHP-FPERNPPKSKGGERGPLSLGSPWGL-PKQEKGGAPLKGGAKRG* 415 + ENGKL G+P F E +P K G+ G + GL K GA LKGGAKR Sbjct: 61 KAENGKLVINGKPITVFQELDPANIKWGDAGAEYVVESTGLFTTMGKAGAHLKGGAKRVI 120 Query: 416 FSAPFANAPGCVRGGTPENSDTPPKMRQ*APAPPKVLAPRGEGVL*TLSILRGRTMN--- 586 SAP A+AP V G E D K+ A LAP + + I+ G Sbjct: 121 ISAPSADAPMFVMGVNHEKYDNSLKIVSNASCTTNCLAPLAKVIHDNFGIVEGLMTTVHA 180 Query: 587 ---TGWVLFGPQKYGW 625 T + GP + W Sbjct: 181 ITATQMTVDGPSRKAW 196 >ref|XP_001002772.1| PREDICTED: similar to Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) [Mus musculus] Length = 335 Score = 84.7 bits (208), Expect(2) = 1e-26 Identities = 48/67 (71%), Positives = 52/67 (77%), Gaps = 3/67 (4%) Frame = +3 Query: 72 MVKVGVNGFGRIGRLVTRAAFNS--GKVDIVAINDPFIDLHYMVYMVQYDSPR-EVPGTV 242 MVKVGVNGFGRIGRLVTRAA S GKV+IVAINDPFIDL+YMVYM Q DS + TV Sbjct: 1 MVKVGVNGFGRIGRLVTRAAVCSPLGKVEIVAINDPFIDLNYMVYMFQSDSTHGKFNSTV 60 Query: 243 KGKTGSL 263 K + G L Sbjct: 61 KAENGKL 67 Score = 53.9 bits (128), Expect(2) = 1e-26 Identities = 46/136 (33%), Positives = 58/136 (42%), Gaps = 8/136 (5%) Frame = +2 Query: 242 QGENGKLASMGRPHP-FPERNPPKSKGGERGPLSLGSPWGL-PKQEKGGAPLKGGAKRG* 415 + ENGKL G+P F E +P K G+ G + GL K GA LKGGAKR Sbjct: 61 KAENGKLVINGKPITVFQELDPANIKWGDAGAEYVVESTGLFTTMGKAGAHLKGGAKRVI 120 Query: 416 FSAPFANAPGCVRGGTPENSDTPPKMRQ*APAPPKVLAPRGEGVL*TLSILRGRTMN--- 586 SAP A+AP V G E D K+ A LAP + + I+ G Sbjct: 121 ISAPSADAPMFVMGVNHEKYDNSLKIVSNASCTTNCLAPLAKVIHDNFGIVEGLMTTVHA 180 Query: 587 ---TGWVLFGPQKYGW 625 T + GP + W Sbjct: 181 ITATQMTVDGPSRKAW 196 >ref|XP_899549.1| PREDICTED: similar to Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) [Mus musculus] Length = 335 Score = 84.7 bits (208), Expect(2) = 1e-26 Identities = 48/67 (71%), Positives = 52/67 (77%), Gaps = 3/67 (4%) Frame = +3 Query: 72 MVKVGVNGFGRIGRLVTRAAFNS--GKVDIVAINDPFIDLHYMVYMVQYDSPR-EVPGTV 242 MVKVGVNGFGRIGRLVTRAA S GKV+IVAINDPFIDL+YMVYM Q DS + TV Sbjct: 1 MVKVGVNGFGRIGRLVTRAAVCSPLGKVEIVAINDPFIDLNYMVYMFQSDSTHGKFNSTV 60 Query: 243 KGKTGSL 263 K + G L Sbjct: 61 KAENGKL 67 Score = 53.9 bits (128), Expect(2) = 1e-26 Identities = 46/136 (33%), Positives = 58/136 (42%), Gaps = 8/136 (5%) Frame = +2 Query: 242 QGENGKLASMGRPHP-FPERNPPKSKGGERGPLSLGSPWGL-PKQEKGGAPLKGGAKRG* 415 + ENGKL G+P F E +P K G+ G + GL K GA LKGGAKR Sbjct: 61 KAENGKLVINGKPITVFQELDPANIKWGDAGAEYVVESTGLFTTMGKAGAHLKGGAKRVI 120 Query: 416 FSAPFANAPGCVRGGTPENSDTPPKMRQ*APAPPKVLAPRGEGVL*TLSILRGRTMN--- 586 SAP A+AP V G E D K+ A LAP + + I+ G Sbjct: 121 ISAPSADAPMFVMGVNHEKYDNSLKIVSNASCTTNCLAPLAKVIHDNFGIVEGLMTTVHA 180 Query: 587 ---TGWVLFGPQKYGW 625 T + GP + W Sbjct: 181 ITATQMTVDGPSRKAW 196 >ref|NP_955766.1| glyceraldehyde-3-phosphate dehydrogenase (phosphorylating)-like [Mus musculus] Length = 337 Score = 85.1 bits (209), Expect(2) = 1e-24 Identities = 47/67 (70%), Positives = 50/67 (74%), Gaps = 3/67 (4%) Frame = +3 Query: 72 MVKVGVNGFGRIGRLVTRAAFNS--GKVDIVAINDPFIDLHYMVYMVQYDSPR-EVPGTV 242 MVK GVNGFG IGRLVTR A S GKV+IVAINDPFIDL YMVYM QYDS + GTV Sbjct: 1 MVKAGVNGFGHIGRLVTRVAICSLHGKVEIVAINDPFIDLDYMVYMFQYDSTHSKFNGTV 60 Query: 243 KGKTGSL 263 K + G L Sbjct: 61 KAENGKL 67 Score = 46.6 bits (109), Expect(2) = 1e-24 Identities = 45/129 (34%), Positives = 56/129 (43%), Gaps = 4/129 (3%) Frame = +2 Query: 242 QGENGKLASMGRPHP-FPERN--PPKSKGGERGPLSLGSPWGL-PKQEKGGAPLKGGAKR 409 + ENGKL G+P F ER+ PP K E + G+ EK GA LKGGAKR Sbjct: 61 KAENGKLVINGKPITIFQERDCPPPNIKWDEASAEYVVESTGVFTTMEKAGAHLKGGAKR 120 Query: 410 G*FSAPFANAPGCVRGGTPENSDTPPKMRQ*APAPPKVLAPRGEGVL*TLSILRGRTMNT 589 S A+AP V G E D K+ A LAP + + I+ G M T Sbjct: 121 VIISVRSADAPMFVMGVNHEKYDNSLKIVSNASCTTNCLAPLAKVIHDNFGIVEG-LMTT 179 Query: 590 GWVLFGPQK 616 + QK Sbjct: 180 VHAITATQK 188 >ref|XP_922387.2| PREDICTED: similar to Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) [Mus musculus] Length = 401 Score = 110 bits (275), Expect = 1e-24 Identities = 67/124 (54%), Positives = 83/124 (66%), Gaps = 5/124 (4%) Frame = +3 Query: 6 LLLPVRQTAVCSVHCQPRP*DTMVKVGVNGFGRIGRLVTRAAFNS--GKVDIVAINDPFI 179 + L + ++ ++ CQPRP D MVKVGVNGFGRIGRLVTRAAF S GKV+IVAINDPFI Sbjct: 44 MFLMLARSYTAALMCQPRPVDKMVKVGVNGFGRIGRLVTRAAFCSPHGKVEIVAINDPFI 103 Query: 180 DLHYMVYMVQYDSPR-EVPGTVKGKTGSLP-QWEGLTLSRSGIPPNQR-GESGGPLVWGV 350 DL+YMVYM QYDS + GTVK + G L + +T+ + P N + GE+G V Sbjct: 104 DLNYMVYMFQYDSTHGKFNGTVKAENGKLVINGKPITVFQERDPTNIKCGEAGAEYVMES 163 Query: 351 PGGF 362 G F Sbjct: 164 TGVF 167 >ref|XP_988596.1| PREDICTED: similar to Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) [Mus musculus] Length = 509 Score = 77.8 bits (190), Expect(2) = 5e-24 Identities = 43/60 (71%), Positives = 47/60 (78%), Gaps = 3/60 (5%) Frame = +3 Query: 93 GFGRIGRLVTRAAFNS--GKVDIVAINDPFIDLHYMVYMVQYDSPR-EVPGTVKGKTGSL 263 GFGRIGRLVTRAA S GKV+IVAINDPFIDL+YMVYM QYDS + GTVK + G L Sbjct: 182 GFGRIGRLVTRAAICSPHGKVEIVAINDPFIDLNYMVYMFQYDSTHGKFNGTVKAENGKL 241 Score = 51.6 bits (122), Expect(2) = 5e-24 Identities = 45/127 (35%), Positives = 57/127 (44%), Gaps = 2/127 (1%) Frame = +2 Query: 242 QGENGKLASMGRPHP-FPERNPPKSKGGERGPLSLGSPWGL-PKQEKGGAPLKGGAKRG* 415 + ENGKL G+P F ER+P K G+ + G+ EK GA LKG AKR Sbjct: 235 KAENGKLVINGKPITIFQERDPTNIKWGDASVEYVVESTGVFTTMEKAGAHLKGRAKRVI 294 Query: 416 FSAPFANAPGCVRGGTPENSDTPPKMRQ*APAPPKVLAPRGEGVL*TLSILRGRTMNTGW 595 SAP A+AP V G E D K+ A LAP + + I+ G M T Sbjct: 295 ISAPSADAPMFVMGVNHEKYDNSLKIVSNASCTTNCLAPLAKVIHDNFGIVEG-LMTTVL 353 Query: 596 VLFGPQK 616 + QK Sbjct: 354 AITATQK 360 >ref|XP_001004821.1| PREDICTED: similar to Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) [Mus musculus] Length = 509 Score = 77.8 bits (190), Expect(2) = 5e-24 Identities = 43/60 (71%), Positives = 47/60 (78%), Gaps = 3/60 (5%) Frame = +3 Query: 93 GFGRIGRLVTRAAFNS--GKVDIVAINDPFIDLHYMVYMVQYDSPR-EVPGTVKGKTGSL 263 GFGRIGRLVTRAA S GKV+IVAINDPFIDL+YMVYM QYDS + GTVK + G L Sbjct: 182 GFGRIGRLVTRAAICSPHGKVEIVAINDPFIDLNYMVYMFQYDSTHGKFNGTVKAENGKL 241 Score = 51.6 bits (122), Expect(2) = 5e-24 Identities = 45/127 (35%), Positives = 57/127 (44%), Gaps = 2/127 (1%) Frame = +2 Query: 242 QGENGKLASMGRPHP-FPERNPPKSKGGERGPLSLGSPWGL-PKQEKGGAPLKGGAKRG* 415 + ENGKL G+P F ER+P K G+ + G+ EK GA LKG AKR Sbjct: 235 KAENGKLVINGKPITIFQERDPTNIKWGDASVEYVVESTGVFTTMEKAGAHLKGRAKRVI 294 Query: 416 FSAPFANAPGCVRGGTPENSDTPPKMRQ*APAPPKVLAPRGEGVL*TLSILRGRTMNTGW 595 SAP A+AP V G E D K+ A LAP + + I+ G M T Sbjct: 295 ISAPSADAPMFVMGVNHEKYDNSLKIVSNASCTTNCLAPLAKVIHDNFGIVEG-LMTTVL 353 Query: 596 VLFGPQK 616 + QK Sbjct: 354 AITATQK 360 >ref|XP_995982.1| PREDICTED: similar to Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) [Mus musculus] Length = 343 Score = 76.6 bits (187), Expect(2) = 2e-23 Identities = 41/62 (66%), Positives = 48/62 (77%), Gaps = 3/62 (4%) Frame = +3 Query: 87 VNGFGRIGRLVTRAAFNS--GKVDIVAINDPFIDLHYMVYMVQYDSPR-EVPGTVKGKTG 257 VNGFG IGRL+TRAAF S GKV++VAINDPFIDL+YM+YM Q DS + GTVK + G Sbjct: 14 VNGFGHIGRLITRAAFCSPHGKVEVVAINDPFIDLNYMLYMFQSDSTHGKFNGTVKAENG 73 Query: 258 SL 263 L Sbjct: 74 KL 75 Score = 50.8 bits (120), Expect(2) = 2e-23 Identities = 44/127 (34%), Positives = 56/127 (44%), Gaps = 2/127 (1%) Frame = +2 Query: 242 QGENGKLASMGRPHP-FPERNPPKSKGGERGPLSLGSPWGL-PKQEKGGAPLKGGAKRG* 415 + ENGKL +P F ER+P K GE + G+ EK GA LKGGAKR Sbjct: 69 KAENGKLVINRKPITIFQERDPANIKWGEASAEYVVESTGVFTTMEKAGAHLKGGAKRVI 128 Query: 416 FSAPFANAPGCVRGGTPENSDTPPKMRQ*APAPPKVLAPRGEGVL*TLSILRGRTMNTGW 595 SAP A+ P V G + D K+ A LAP + + I+ G M T Sbjct: 129 ISAPSADTPMFVMGVNQKKYDNSLKIASNASCTTNCLAPLAKVIHDNCGIVEG-LMTTVH 187 Query: 596 VLFGPQK 616 + QK Sbjct: 188 AITATQK 194 >ref|XP_920080.2| PREDICTED: similar to Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) [Mus musculus] Length = 343 Score = 76.6 bits (187), Expect(2) = 2e-23 Identities = 41/62 (66%), Positives = 48/62 (77%), Gaps = 3/62 (4%) Frame = +3 Query: 87 VNGFGRIGRLVTRAAFNS--GKVDIVAINDPFIDLHYMVYMVQYDSPR-EVPGTVKGKTG 257 VNGFG IGRL+TRAAF S GKV++VAINDPFIDL+YM+YM Q DS + GTVK + G Sbjct: 14 VNGFGHIGRLITRAAFCSPHGKVEVVAINDPFIDLNYMLYMFQSDSTHGKFNGTVKAENG 73 Query: 258 SL 263 L Sbjct: 74 KL 75 Score = 50.8 bits (120), Expect(2) = 2e-23 Identities = 44/127 (34%), Positives = 56/127 (44%), Gaps = 2/127 (1%) Frame = +2 Query: 242 QGENGKLASMGRPHP-FPERNPPKSKGGERGPLSLGSPWGL-PKQEKGGAPLKGGAKRG* 415 + ENGKL +P F ER+P K GE + G+ EK GA LKGGAKR Sbjct: 69 KAENGKLVINRKPITIFQERDPANIKWGEASAEYVVESTGVFTTMEKAGAHLKGGAKRVI 128 Query: 416 FSAPFANAPGCVRGGTPENSDTPPKMRQ*APAPPKVLAPRGEGVL*TLSILRGRTMNTGW 595 SAP A+ P V G + D K+ A LAP + + I+ G M T Sbjct: 129 ISAPSADTPMFVMGVNQKKYDNSLKIASNASCTTNCLAPLAKVIHDNCGIVEG-LMTTVH 187 Query: 596 VLFGPQK 616 + QK Sbjct: 188 AITATQK 194 >ref|XP_986001.1| PREDICTED: similar to Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) [Mus musculus] Length = 343 Score = 76.6 bits (187), Expect(2) = 2e-23 Identities = 41/62 (66%), Positives = 48/62 (77%), Gaps = 3/62 (4%) Frame = +3 Query: 87 VNGFGRIGRLVTRAAFNS--GKVDIVAINDPFIDLHYMVYMVQYDSPR-EVPGTVKGKTG 257 VNGFG IGRL+TRAAF S GKV++VAINDPFIDL+YM+YM Q DS + GTVK + G Sbjct: 14 VNGFGHIGRLITRAAFCSPHGKVEVVAINDPFIDLNYMLYMFQSDSTHGKFNGTVKAENG 73 Query: 258 SL 263 L Sbjct: 74 KL 75 Score = 50.8 bits (120), Expect(2) = 2e-23 Identities = 44/127 (34%), Positives = 56/127 (44%), Gaps = 2/127 (1%) Frame = +2 Query: 242 QGENGKLASMGRPHP-FPERNPPKSKGGERGPLSLGSPWGL-PKQEKGGAPLKGGAKRG* 415 + ENGKL +P F ER+P K GE + G+ EK GA LKGGAKR Sbjct: 69 KAENGKLVINRKPITIFQERDPANIKWGEASAEYVVESTGVFTTMEKAGAHLKGGAKRVI 128 Query: 416 FSAPFANAPGCVRGGTPENSDTPPKMRQ*APAPPKVLAPRGEGVL*TLSILRGRTMNTGW 595 SAP A+ P V G + D K+ A LAP + + I+ G M T Sbjct: 129 ISAPSADTPMFVMGVNQKKYDNSLKIASNASCTTNCLAPLAKVIHDNCGIVEG-LMTTVH 187 Query: 596 VLFGPQK 616 + QK Sbjct: 188 AITATQK 194 Database: RefSeqMP Posted date: Aug 2, 2006 12:58 AM Number of letters in database: 21,768,885 Number of sequences in database: 45,328 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 43,297,213 Number of Sequences: 45328 Number of extensions: 1441285 Number of successful extensions: 7119 Number of sequences better than 1.0e-05: 10 Number of HSP's better than 0.0 without gapping: 4716 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 6895 length of database: 21,768,885 effective HSP length: 100 effective length of database: 17,236,085 effective search space used: 2395815815 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
Search to RefSeqCP
BLASTX 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= 20060611S-037016 (720 letters) Database: RefSeqCP 33,732 sequences; 19,266,565 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Alignment gi|XP_549000.2| PREDICTED: similar to Glyceraldehyde-3-phosphat... 106 1e-31 Alignment gi|XP_852742.1| PREDICTED: similar to glyceraldehyde-3-phosphat... 100 2e-30 Alignment gi|XP_534110.2| PREDICTED: similar to Glyceraldehyde-3-phosphat... 103 6e-30 Alignment gi|XP_534639.1| PREDICTED: similar to glyceraldehyde-3-phosphat... 96 3e-29 Alignment gi|XP_854309.1| PREDICTED: similar to Glyceraldehyde-3-phosphat... 96 2e-27 Alignment gi|XP_852804.1| PREDICTED: similar to Glyceraldehyde-3-phosphat... 90 7e-27 Alignment gi|XP_850278.1| PREDICTED: similar to Glyceraldehyde-3-phosphat... 96 3e-26 Alignment gi|XP_855282.1| PREDICTED: similar to Glyceraldehyde-3-phosphat... 96 2e-25 Alignment gi|XP_854979.1| PREDICTED: similar to Glyceraldehyde-3-phosphat... 92 5e-25 Alignment gi|XP_848762.1| PREDICTED: similar to glyceraldehyde-3-phosphat... 106 2e-23 >ref|XP_549000.2| PREDICTED: similar to Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) [Canis familiaris] Length = 344 Score = 106 bits (265), Expect(2) = 1e-31 Identities = 55/75 (73%), Positives = 59/75 (78%), Gaps = 1/75 (1%) Frame = +3 Query: 42 VHCQPRP*DTMVKVGVNGFGRIGRLVTRAAFNSGKVDIVAINDPFIDLHYMVYMVQYDSP 221 V CQP P DTMVKVGVNGFGRIG LVTRAA NSGK+DIVAIND FIDL+YMVYM QYDS Sbjct: 14 VQCQPHPGDTMVKVGVNGFGRIGHLVTRAALNSGKMDIVAINDTFIDLNYMVYMFQYDST 73 Query: 222 R-EVPGTVKGKTGSL 263 + GTVK + L Sbjct: 74 HGKFHGTVKAENRKL 88 Score = 48.1 bits (113), Expect(2) = 1e-31 Identities = 45/127 (35%), Positives = 56/127 (44%), Gaps = 2/127 (1%) Frame = +2 Query: 242 QGENGKLASMGRPHP-FPERNPPKSKGGERGPLSLGSPWGL-PKQEKGGAPLKGGAKRG* 415 + EN KL G+ F ERNP K G+ G + G+ EK GA LKGGAKR Sbjct: 82 KAENRKLVINGKSISIFQERNPYNIKWGDAGAEYVVESAGVFTTMEKAGAHLKGGAKRVI 141 Query: 416 FSAPFANAPGCVRGGTPENSDTPPKMRQ*APAPPKVLAPRGEGVL*TLSILRGRTMNTGW 595 SA A AP V G E D K+ A LAP + + I+ G M T Sbjct: 142 ISASSAEAPMFVMGMNHEKYDNSLKIVSNASCTTNWLAPLAKVIHGHFGIVEG-LMTTVH 200 Query: 596 VLFGPQK 616 ++ QK Sbjct: 201 IITATQK 207 >ref|XP_852742.1| PREDICTED: similar to glyceraldehyde-3-phosphate dehydrogenase [Canis familiaris] Length = 275 Score = 100 bits (248), Expect(2) = 2e-30 Identities = 51/65 (78%), Positives = 55/65 (84%), Gaps = 1/65 (1%) Frame = +3 Query: 72 MVKVGVNGFGRIGRLVTRAAFNSGKVDIVAINDPFIDLHYMVYMVQYDSPR-EVPGTVKG 248 MVKVGVNGFGRIG +VTRAAFNSGKVDIVAINDPFIDL+YMVYM QYDS + GTVK Sbjct: 1 MVKVGVNGFGRIGHVVTRAAFNSGKVDIVAINDPFIDLNYMVYMFQYDSTHGKFHGTVKA 60 Query: 249 KTGSL 263 + G L Sbjct: 61 ENGKL 65 Score = 50.4 bits (119), Expect(2) = 2e-30 Identities = 46/137 (33%), Positives = 58/137 (42%), Gaps = 8/137 (5%) Frame = +2 Query: 242 QGENGKLASMGRPHP-FPERNPPKSKGGERGPLSLGSPWGL-PKQEKGGAPLKGGAKRG* 415 + ENGKL G+ F ER+P K + G + G+ EK GA LKGGAKR Sbjct: 59 KAENGKLVIGGKSISIFQERDPANIKWDDAGAEYVVESTGVFTTMEKAGAHLKGGAKRII 118 Query: 416 FSAPFANAPGCVRGGTPENSDTPPKMRQ*APAPPKVLAPRGEGVL*TLSILRGRTMN--- 586 SAP A+AP V G E D K+ A LAP + + I+ G Sbjct: 119 ISAPSADAPMFVMGVNHEKYDNSLKIVSNASCTTNCLAPLAKVIHDHFGIVEGLMTTVHA 178 Query: 587 ---TGWVLFGPQKYGWC 628 T + GP WC Sbjct: 179 ITATQKTVDGPSGKLWC 195 >ref|XP_534110.2| PREDICTED: similar to Glyceraldehyde-3-phosphate dehydrogenase, liver (GAPDH) [Canis familiaris] Length = 137 Score = 103 bits (258), Expect(2) = 6e-30 Identities = 53/65 (81%), Positives = 57/65 (87%), Gaps = 1/65 (1%) Frame = +3 Query: 72 MVKVGVNGFGRIGRLVTRAAFNSGKVDIVAINDPFIDLHYMVYMVQYDSPR-EVPGTVKG 248 MVKVGVNGFGRIGRLVTRAAFNSGKVDIVAINDPFIDL+YMVYM QYDS ++ GTVK Sbjct: 1 MVKVGVNGFGRIGRLVTRAAFNSGKVDIVAINDPFIDLNYMVYMFQYDSTHGKLHGTVKA 60 Query: 249 KTGSL 263 + G L Sbjct: 61 ENGKL 65 Score = 45.4 bits (106), Expect(2) = 6e-30 Identities = 32/74 (43%), Positives = 40/74 (54%), Gaps = 2/74 (2%) Frame = +2 Query: 242 QGENGKLASMGRPHP-FPERNPPKSKGGERGPLSLGSPWGL-PKQEKGGAPLKGGAKRG* 415 + ENGKL G+ F E++P K G+ G + G+ EK GA LKGGAKR Sbjct: 59 KAENGKLVINGKSISIFQEQDPADIKWGDAGAEYVVESTGVFTTMEKAGAHLKGGAKRVI 118 Query: 416 FSAPFANAPGCVRG 457 SAP A+AP V G Sbjct: 119 ISAPSADAPMFVMG 132 >ref|XP_534639.1| PREDICTED: similar to glyceraldehyde-3-phosphate dehydrogenase [Canis familiaris] Length = 334 Score = 95.5 bits (236), Expect(2) = 3e-29 Identities = 50/65 (76%), Positives = 53/65 (81%), Gaps = 1/65 (1%) Frame = +3 Query: 72 MVKVGVNGFGRIGRLVTRAAFNSGKVDIVAINDPFIDLHYMVYMVQYDSPR-EVPGTVKG 248 MVKV VNGFG IGRLVTR AFNSGKVDIVAINDPFIDL+YMVYM QYDS + GTVK Sbjct: 2 MVKVRVNGFGCIGRLVTRTAFNSGKVDIVAINDPFIDLNYMVYMFQYDSTHGKFHGTVKA 61 Query: 249 KTGSL 263 + G L Sbjct: 62 ENGKL 66 Score = 51.2 bits (121), Expect(2) = 3e-29 Identities = 40/99 (40%), Positives = 48/99 (48%), Gaps = 2/99 (2%) Frame = +2 Query: 242 QGENGKLASMGRPHP-FPERNPPKSKGGERGPLSLGSPWGL-PKQEKGGAPLKGGAKRG* 415 + ENGKL G+ F ER+P K G+ G + G+ EK GA LKGGAKR Sbjct: 60 KAENGKLIINGKSISIFQERDPANIKWGDAGAEYVVESTGVFTTMEKVGAHLKGGAKRVI 119 Query: 416 FSAPFANAPGCVRGGTPENSDTPPKMRQ*APAPPKVLAP 532 SAP A+AP V G E D K+ A LAP Sbjct: 120 ISAPSADAPMFVMGVNHEKYDNSLKIVSNASCTTNCLAP 158 >ref|XP_854309.1| PREDICTED: similar to Glyceraldehyde-3-phosphate dehydrogenase, liver (GAPDH) [Canis familiaris] Length = 196 Score = 95.9 bits (237), Expect(2) = 2e-27 Identities = 50/65 (76%), Positives = 54/65 (83%), Gaps = 1/65 (1%) Frame = +3 Query: 72 MVKVGVNGFGRIGRLVTRAAFNSGKVDIVAINDPFIDLHYMVYMVQYDSPR-EVPGTVKG 248 MVKVGVNGFG IGRLVTRAAFNSGKVD+VAIND FIDL+YMVYM QYDS + GTVK Sbjct: 2 MVKVGVNGFGCIGRLVTRAAFNSGKVDLVAINDHFIDLNYMVYMFQYDSTHGKFHGTVKA 61 Query: 249 KTGSL 263 + G L Sbjct: 62 ENGKL 66 Score = 44.7 bits (104), Expect(2) = 2e-27 Identities = 36/99 (36%), Positives = 45/99 (45%), Gaps = 2/99 (2%) Frame = +2 Query: 242 QGENGKLASMGRPHP-FPERNPPKSKGGERGPLSLGSPWGL-PKQEKGGAPLKGGAKRG* 415 + ENGKL G+ F E++P K G+ G G+ EK G PLKG AKR Sbjct: 60 KAENGKLVINGKSISIFQEQDPTNIKWGDAGAEYFVESTGVFTTMEKAGDPLKGRAKRVI 119 Query: 416 FSAPFANAPGCVRGGTPENSDTPPKMRQ*APAPPKVLAP 532 S P A+AP V G E + K+ A LAP Sbjct: 120 ISTPSADAPMFVMGVNHEKYNNSLKIVSNASCITNCLAP 158 >ref|XP_852804.1| PREDICTED: similar to Glyceraldehyde-3-phosphate dehydrogenase, liver (GAPDH) [Canis familiaris] Length = 351 Score = 89.7 bits (221), Expect(2) = 7e-27 Identities = 46/67 (68%), Positives = 54/67 (80%), Gaps = 1/67 (1%) Frame = +3 Query: 66 DTMVKVGVNGFGRIGRLVTRAAFNSGKVDIVAINDPFIDLHYMVYMVQYDSPR-EVPGTV 242 +T+VKVGVN FGRIG LVT AAFNSGKVD VAINDPFI+L+Y+VYM QYDS + TV Sbjct: 18 ETIVKVGVNRFGRIGHLVTTAAFNSGKVDTVAINDPFINLNYIVYMFQYDSTHSKFHSTV 77 Query: 243 KGKTGSL 263 K + G+L Sbjct: 78 KARIGNL 84 Score = 49.3 bits (116), Expect(2) = 7e-27 Identities = 42/122 (34%), Positives = 53/122 (43%), Gaps = 1/122 (0%) Frame = +2 Query: 254 GKLASMGRPHPFPERNPPKSKGGERGPLSLGSPWGL-PKQEKGGAPLKGGAKRG*FSAPF 430 G L+SMG P P R+P K + G + G+ EK GA LKGGAKR AP Sbjct: 82 GNLSSMGSPSPSSRRDPANIKWCDAGAEYVVESTGIFTTMEKAGAHLKGGAKRVIIFAPS 141 Query: 431 ANAPGCVRGGTPENSDTPPKMRQ*APAPPKVLAPRGEGVL*TLSILRGRTMNTGWVLFGP 610 A+ V G E D K+ A LAP + + SI+ G M T + Sbjct: 142 ADVAMFVMGVNHEKCDNSFKIVSNASCTTNCLAPLAKVIHDHFSIVEG-LMTTVHAITAT 200 Query: 611 QK 616 QK Sbjct: 201 QK 202 >ref|XP_850278.1| PREDICTED: similar to Glyceraldehyde-3-phosphate dehydrogenase, liver (GAPDH) [Canis familiaris] Length = 281 Score = 95.9 bits (237), Expect(2) = 3e-26 Identities = 49/65 (75%), Positives = 53/65 (81%), Gaps = 1/65 (1%) Frame = +3 Query: 72 MVKVGVNGFGRIGRLVTRAAFNSGKVDIVAINDPFIDLHYMVYMVQYDSPR-EVPGTVKG 248 MVK GVNGFGRIG LVTRAAFNSGKVDIVAINDPFIDL+YMVYM QYDS + GT+ Sbjct: 2 MVKAGVNGFGRIGCLVTRAAFNSGKVDIVAINDPFIDLNYMVYMFQYDSTHGKFHGTIMA 61 Query: 249 KTGSL 263 + G L Sbjct: 62 ENGKL 66 Score = 41.2 bits (95), Expect(2) = 3e-26 Identities = 39/112 (34%), Positives = 49/112 (43%), Gaps = 3/112 (2%) Frame = +2 Query: 248 ENGKLASMGRPHP-FPERNPPKSKGGERGPLSLGSPWGL-PKQEKGGAPLKGGAKRG*FS 421 ENGKL + F E+ P K G+ + G+ EK GA LKGGAKR S Sbjct: 62 ENGKLVINRKSISIFQEQGPTNIKWGDADAKYVVESTGVFTTMEKAGAHLKGGAKRVIIS 121 Query: 422 APFANAPGCVRGGTPENSDTPPK-MRQ*APAPPKVLAPRGEGVL*TLSILRG 574 P A+AP V G E D K + A LAP + + SI+ G Sbjct: 122 VPSADAPTFVLGVNHEKYDNSLKIIVSNASCTTNCLAPLAKVIHDHFSIMEG 173 >ref|XP_855282.1| PREDICTED: similar to Glyceraldehyde-3-phosphate dehydrogenase, liver (GAPDH) [Canis familiaris] Length = 137 Score = 96.3 bits (238), Expect(2) = 2e-25 Identities = 50/65 (76%), Positives = 54/65 (83%), Gaps = 1/65 (1%) Frame = +3 Query: 72 MVKVGVNGFGRIGRLVTRAAFNSGKVDIVAINDPFIDLHYMVYMVQYDSPR-EVPGTVKG 248 MVKV VNGFGRIGRLVTRAAFNS KVD VAINDPFIDL+YMVYM+QYDS + GTVK Sbjct: 1 MVKVRVNGFGRIGRLVTRAAFNSAKVDTVAINDPFIDLNYMVYMLQYDSTHSKFHGTVKA 60 Query: 249 KTGSL 263 + G L Sbjct: 61 ENGRL 65 Score = 38.1 bits (87), Expect(2) = 2e-25 Identities = 30/78 (38%), Positives = 39/78 (50%), Gaps = 2/78 (2%) Frame = +2 Query: 242 QGENGKLASMGRP-HPFPERNPPKSKGGERGPLSLGSPWGL-PKQEKGGAPLKGGAKRG* 415 + ENG+L + F ER+P K G+ G + G+ EK GA L G AKR Sbjct: 59 KAENGRLGINRKSIFIFQERDPTNIKWGDAGAEYVVESIGVFATMEKAGAHLTGRAKRVI 118 Query: 416 FSAPFANAPGCVRGGTPE 469 SAP A+AP V G + E Sbjct: 119 ISAPSADAPMFVMGRSHE 136 >ref|XP_854979.1| PREDICTED: similar to Glyceraldehyde-3-phosphate dehydrogenase, liver (GAPDH) [Canis familiaris] Length = 267 Score = 92.0 bits (227), Expect(2) = 5e-25 Identities = 44/49 (89%), Positives = 47/49 (95%) Frame = +3 Query: 72 MVKVGVNGFGRIGRLVTRAAFNSGKVDIVAINDPFIDLHYMVYMVQYDS 218 MVKVGVNGFGRIG LVTRAAFNSGK++IVAINDPFIDL+YMVYM QYDS Sbjct: 1 MVKVGVNGFGRIGHLVTRAAFNSGKMNIVAINDPFIDLNYMVYMFQYDS 49 Score = 40.8 bits (94), Expect(2) = 5e-25 Identities = 29/69 (42%), Positives = 36/69 (52%), Gaps = 2/69 (2%) Frame = +2 Query: 242 QGENGKLASMGRPHP-FPERNPPKSKGGERGPLSLGSPWGL-PKQEKGGAPLKGGAKRG* 415 + EN KL G+ F ER+P K G+ G + G+ EK G LKGGAKR Sbjct: 59 KAENRKLVINGKSISIFQERDPANIKWGDAGAEYVVESTGVFTTMEKAGDHLKGGAKRDI 118 Query: 416 FSAPFANAP 442 SAP A+AP Sbjct: 119 VSAPSADAP 127 >ref|XP_848762.1| PREDICTED: similar to glyceraldehyde-3-phosphate dehydrogenase [Canis familiaris] Length = 236 Score = 106 bits (264), Expect = 2e-23 Identities = 61/100 (61%), Positives = 71/100 (71%), Gaps = 3/100 (3%) Frame = +3 Query: 72 MVKVGVNGFGRIGRLVTRAAFNSGKVDIVAINDPFIDLHYMVYMVQYDSPR-EVPGTVKG 248 MVKVGVNGFGRIGRLVTRAAFNSGKVDIVAINDPFIDLHYMVYM QYDS + GTVK Sbjct: 1 MVKVGVNGFGRIGRLVTRAAFNSGKVDIVAINDPFIDLHYMVYMFQYDSTHSKFHGTVKA 60 Query: 249 KTGSLP-QWEGLTLSRSGIPPNQR-GESGGPLVWGVPGGF 362 + G L + +++ + P N + G++G V G F Sbjct: 61 ENGKLVINGKSISIFQEQDPANIKWGDAGAEYVVESTGVF 100 Score = 51.6 bits (122), Expect = 7e-07 Identities = 45/127 (35%), Positives = 58/127 (45%), Gaps = 2/127 (1%) Frame = +2 Query: 242 QGENGKLASMGRPHP-FPERNPPKSKGGERGPLSLGSPWGL-PKQEKGGAPLKGGAKRG* 415 + ENGKL G+ F E++P K G+ G + G+ EK GA LKGGAKR Sbjct: 59 KAENGKLVINGKSISIFQEQDPANIKWGDAGAEYVVESTGVFTTMEKAGAHLKGGAKRVI 118 Query: 416 FSAPFANAPGCVRGGTPENSDTPPKMRQ*APAPPKVLAPRGEGVL*TLSILRGRTMNTGW 595 SAP A+AP V G E D K+ A LAP + + I+ G M T Sbjct: 119 ISAPSADAPMFVMGVNQEKYDHSLKIVSNASCTTNCLAPLAKVIHDHFGIVEG-LMTTVH 177 Query: 596 VLFGPQK 616 + QK Sbjct: 178 AITATQK 184 Database: RefSeqCP Posted date: Aug 1, 2006 9:25 PM Number of letters in database: 19,266,565 Number of sequences in database: 33,732 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 38,734,307 Number of Sequences: 33732 Number of extensions: 1338847 Number of successful extensions: 6985 Number of sequences better than 1.0e-05: 10 Number of HSP's better than 0.0 without gapping: 4549 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 6851 length of database: 19,266,565 effective HSP length: 100 effective length of database: 15,893,365 effective search space used: 2209177735 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)