Animal-Genome cDNA 20060611S-037016


Search to RefSeqSP

BLASTX 2.2.10 [Oct-19-2004]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20060611S-037016
         (720 letters)

Database: RefSeqSP 
           1040 sequences; 434,620 total letters

Searching...done

 ***** No hits found ******

  Database: RefSeqSP
    Posted date:  Aug 1, 2006  7:14 PM
  Number of letters in database: 434,620
  Number of sequences in database:  1040
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 848,879
Number of Sequences: 1040
Number of extensions: 27363
Number of successful extensions: 151
Number of sequences better than 1.0e-05: 0
Number of HSP's better than  0.0 without gapping: 97
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 144
length of database: 434,620
effective HSP length: 74
effective length of database: 357,660
effective search space used: 59013900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

Search to RefSeqBP

BLASTX 2.2.10 [Oct-19-2004]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20060611S-037016
         (720 letters)

Database: RefSeqBP 
           33,508 sequences; 16,112,626 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_001029206.1| glyceraldehyde-3-phosphate dehydrogenase [Bo...   108   5e-24
Alignment   gi|XP_614369.2| PREDICTED: similar to Receptor-type tyrosine-pr...   104   6e-23
Alignment   gi|XP_871774.1| PREDICTED: similar to Glyceraldehyde-3-phosphat...    82   1e-21
Alignment   gi|XP_875044.1| PREDICTED: similar to Glyceraldehyde-3-phosphat...    99   3e-21
Alignment   gi|XP_610741.2| PREDICTED: similar to Glyceraldehyde-3-phosphat...    72   3e-13

>ref|NP_001029206.1| glyceraldehyde-3-phosphate dehydrogenase [Bos taurus]
          Length = 333

 Score =  108 bits (269), Expect = 5e-24
 Identities = 70/137 (51%), Positives = 79/137 (57%), Gaps = 4/137 (2%)
 Frame = +3

Query: 72  MVKVGVNGFGRIGRLVTRAAFNSGKVDIVAINDPFIDLHYMVYMVQYDSPR-EVPGTVKG 248
           MVKVGVNGFGRIGRLVTRAAFNSGKVDIVAINDPFIDLHYMVYM QYDS   +  GTVK 
Sbjct: 1   MVKVGVNGFGRIGRLVTRAAFNSGKVDIVAINDPFIDLHYMVYMFQYDSTHGKFNGTVKA 60

Query: 249 KTGSLP-QWEGLTLSRSGIPPNQR-GESGGPLVWGVPGGFPNXXXXXXXXXXXXXXV-NS 419
           + G L    + +T+ +   P N + G++G   V    G F                V  S
Sbjct: 61  ENGKLVINGKAITIFQERDPANIKWGDAGAEYVVESTGVFTTMEKAGAHLKGGAKRVIIS 120

Query: 420 RPLLRMPPVV*GGGHRK 470
            P    P  V G  H K
Sbjct: 121 APSADAPMFVMGVNHEK 137



 Score = 51.6 bits (122), Expect = 6e-07
 Identities = 45/127 (35%), Positives = 58/127 (45%), Gaps = 2/127 (1%)
 Frame = +2

Query: 242 QGENGKLASMGRPHP-FPERNPPKSKGGERGPLSLGSPWGL-PKQEKGGAPLKGGAKRG* 415
           + ENGKL   G+    F ER+P   K G+ G   +    G+    EK GA LKGGAKR  
Sbjct: 59  KAENGKLVINGKAITIFQERDPANIKWGDAGAEYVVESTGVFTTMEKAGAHLKGGAKRVI 118

Query: 416 FSAPFANAPGCVRGGTPENSDTPPKMRQ*APAPPKVLAPRGEGVL*TLSILRGRTMNTGW 595
            SAP A+AP  V G   E  +   K+   A      LAP  + +     I+ G  M T  
Sbjct: 119 ISAPSADAPMFVMGVNHEKYNNTLKIVSNASCTTNCLAPLAKVIHDHFGIVEG-LMTTVH 177

Query: 596 VLFGPQK 616
            +   QK
Sbjct: 178 AITATQK 184


>ref|XP_614369.2| PREDICTED: similar to Receptor-type tyrosine-protein
           phosphatase-like N precursor (R-PTP-N) (PTP IA-2) (Islet
           cell antigen 512) (ICA 512) (Islet cell autoantigen 3)
           [Bos taurus]
          Length = 836

 Score =  104 bits (260), Expect = 6e-23
 Identities = 70/159 (44%), Positives = 82/159 (51%), Gaps = 4/159 (2%)
 Frame = +3

Query: 72  MVKVGVNGFGRIGRLVTRAAFNSGKVDIVAINDPFIDLHYMVYMVQYDSPR-EVPGTVKG 248
           MVKVGVNGFG IGRLVTRAAFNSGKVD+VAINDPFIDLHY+VYM QYD+   +  GTVK 
Sbjct: 1   MVKVGVNGFGHIGRLVTRAAFNSGKVDVVAINDPFIDLHYIVYMFQYDTTHGKFHGTVKA 60

Query: 249 KTGSL-PQWEGLTLSRSGIPPNQR-GESGGPLVWGVPGGFPNXXXXXXXXXXXXXXV-NS 419
           + G L    + +T+ +   P N + G++G   V    G F                V  S
Sbjct: 61  ENGKLIINGKAVTIFQERDPANIKWGDAGAEYVVETTGVFTTMEKAGAHLKGGAKSVIIS 120

Query: 420 RPLLRMPPVV*GGGHRKIVTXXXXXXXXXXXXQKFWHPG 536
            P    P  V G  H K                K WH G
Sbjct: 121 APSADAPMFVLGMNHEK-YNNNLKIKTVDGPSGKLWHDG 158


>ref|XP_871774.1| PREDICTED: similar to Glyceraldehyde-3-phosphate dehydrogenase,
           liver (GAPDH) [Bos taurus]
          Length = 242

 Score = 82.4 bits (202), Expect(2) = 1e-21
 Identities = 39/53 (73%), Positives = 43/53 (81%)
 Frame = +3

Query: 87  VNGFGRIGRLVTRAAFNSGKVDIVAINDPFIDLHYMVYMVQYDSPREVPGTVK 245
           +NGFGRIG  VTRAAFNSG VDI+ INDPFIDLHYMVYM QYDS  + P  +K
Sbjct: 1   MNGFGRIGHPVTRAAFNSGNVDIITINDPFIDLHYMVYMFQYDSTHD-PANIK 52



 Score = 38.9 bits (89), Expect(2) = 1e-21
 Identities = 25/54 (46%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
 Frame = +2

Query: 299 NPPKSKGGERGPLSLGSPWGL-PKQEKGGAPLKGGAKRG*FSAPFANAPGCVRG 457
           +P   K G+ G   +    G+    EK GA LKGGAKR   SAP ANAP  V G
Sbjct: 47  DPANIKWGDAGAEYMVESTGVFTTMEKAGAHLKGGAKRVIISAPSANAPKFVMG 100


>ref|XP_875044.1| PREDICTED: similar to Glyceraldehyde-3-phosphate dehydrogenase,
           liver (GAPDH) [Bos taurus]
          Length = 191

 Score = 99.0 bits (245), Expect = 3e-21
 Identities = 57/100 (57%), Positives = 68/100 (68%), Gaps = 3/100 (3%)
 Frame = +3

Query: 72  MVKVGVNGFGRIGRLVTRAAFNSGKVDIVAINDPFIDLHYMVYMVQYDSPR-EVPGTVKG 248
           MVKV V GFGRIGRLVTRAAFNSGKVDIV INDPFIDLHYM+YM QYDS   +  GTVK 
Sbjct: 1   MVKVRVKGFGRIGRLVTRAAFNSGKVDIVTINDPFIDLHYMIYMFQYDSTHGKFHGTVKA 60

Query: 249 KTGSL-PQWEGLTLSRSGIPPNQR-GESGGPLVWGVPGGF 362
           + G L    + +T+ +   P + + G++G   V    G F
Sbjct: 61  ENGKLIINGKAITIFQERDPASIKWGDAGAEYVMESTGVF 100



 Score = 47.8 bits (112), Expect = 8e-06
 Identities = 39/113 (34%), Positives = 51/113 (45%), Gaps = 2/113 (1%)
 Frame = +2

Query: 242 QGENGKLASMGRPHP-FPERNPPKSKGGERGPLSLGSPWGL-PKQEKGGAPLKGGAKRG* 415
           + ENGKL   G+    F ER+P   K G+ G   +    G+    EK GA LKGG KR  
Sbjct: 59  KAENGKLIINGKAITIFQERDPASIKWGDAGAEYVMESTGVFTTMEKAGAHLKGGTKRVI 118

Query: 416 FSAPFANAPGCVRGGTPENSDTPPKMRQ*APAPPKVLAPRGEGVL*TLSILRG 574
            S P A+AP  V G   E  +   K+   A      LAP  + +     I+ G
Sbjct: 119 ISVPSADAPMFVMGLNHEKYNNTLKIVSDASCTTNCLAPLAKVIHDHFGIMEG 171


>ref|XP_610741.2| PREDICTED: similar to Glyceraldehyde-3-phosphate dehydrogenase,
           testis-specific (Spermatogenic cell-specific
           glyceraldehyde 3-phosphate dehydrogenase 2) (GAPDH-2)
           (HSD-35) [Bos taurus]
          Length = 403

 Score = 72.4 bits (176), Expect = 3e-13
 Identities = 38/62 (61%), Positives = 43/62 (69%), Gaps = 1/62 (1%)
 Frame = +3

Query: 81  VGVNGFGRIGRLVTRAAFNSGKVDIVAINDPFIDLHYMVYMVQYDSPR-EVPGTVKGKTG 257
           VG+NGFGRIGRLV RA    G V +VA+NDPFIDL YMVYM +YDS      G V+ K G
Sbjct: 73  VGINGFGRIGRLVLRACMEKG-VKVVAVNDPFIDLEYMVYMFKYDSTHGRYKGNVEHKKG 131

Query: 258 SL 263
            L
Sbjct: 132 QL 133


  Database: RefSeqBP
    Posted date:  Aug 1, 2006  7:14 PM
  Number of letters in database: 16,112,626
  Number of sequences in database:  33,508
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 32,923,692
Number of Sequences: 33508
Number of extensions: 1131740
Number of successful extensions: 5674
Number of sequences better than 1.0e-05: 5
Number of HSP's better than  0.0 without gapping: 3780
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5544
length of database: 16,112,626
effective HSP length: 98
effective length of database: 12,828,842
effective search space used: 1808866722
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

Search to RefSeqHP

BLASTX 2.2.10 [Oct-19-2004]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20060611S-037016
         (720 letters)

Database: RefSeqHP 
           39,411 sequences; 17,774,539 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_002037.2| glyceraldehyde-3-phosphate dehydrogenase [Homo ...   101   1e-32
Alignment   gi|NP_055179.1| glyceraldehyde-3-phosphate dehydrogenase, sperm...    69   4e-12

>ref|NP_002037.2| glyceraldehyde-3-phosphate dehydrogenase [Homo sapiens]
          Length = 335

 Score =  101 bits (251), Expect(2) = 1e-32
 Identities = 52/64 (81%), Positives = 55/64 (85%), Gaps = 1/64 (1%)
 Frame = +3

Query: 75  VKVGVNGFGRIGRLVTRAAFNSGKVDIVAINDPFIDLHYMVYMVQYDSPR-EVPGTVKGK 251
           VKVGVNGFGRIGRLVTRAAFNSGKVDIVAINDPFIDL+YMVYM QYDS   +  GTVK +
Sbjct: 4   VKVGVNGFGRIGRLVTRAAFNSGKVDIVAINDPFIDLNYMVYMFQYDSTHGKFHGTVKAE 63

Query: 252 TGSL 263
            G L
Sbjct: 64  NGKL 67



 Score = 57.0 bits (136), Expect(2) = 1e-32
 Identities = 47/127 (37%), Positives = 59/127 (46%), Gaps = 2/127 (1%)
 Frame = +2

Query: 242 QGENGKLASMGRPHP-FPERNPPKSKGGERGPLSLGSPWGL-PKQEKGGAPLKGGAKRG* 415
           + ENGKL   G P   F ER+P K K G+ G   +    G+    EK GA L+GGAKR  
Sbjct: 61  KAENGKLVINGNPITIFQERDPSKIKWGDAGAEYVVESTGVFTTMEKAGAHLQGGAKRVI 120

Query: 416 FSAPFANAPGCVRGGTPENSDTPPKMRQ*APAPPKVLAPRGEGVL*TLSILRGRTMNTGW 595
            SAP A+AP  V G   E  D   K+   A      LAP  + +     I+ G  M T  
Sbjct: 121 ISAPSADAPMFVMGVNHEKYDNSLKIISNASCTTNCLAPLAKVIHDNFGIVEG-LMTTVH 179

Query: 596 VLFGPQK 616
            +   QK
Sbjct: 180 AITATQK 186


>ref|NP_055179.1| glyceraldehyde-3-phosphate dehydrogenase, spermatogenic [Homo
           sapiens]
          Length = 408

 Score = 68.9 bits (167), Expect = 4e-12
 Identities = 36/62 (58%), Positives = 43/62 (69%), Gaps = 1/62 (1%)
 Frame = +3

Query: 81  VGVNGFGRIGRLVTRAAFNSGKVDIVAINDPFIDLHYMVYMVQYDSPR-EVPGTVKGKTG 257
           VG+NGFGRIGRLV RA    G V +VA+NDPFID  YMVYM +YDS      G+V+ + G
Sbjct: 78  VGINGFGRIGRLVLRACMEKG-VKVVAVNDPFIDPEYMVYMFKYDSTHGRYKGSVEFRNG 136

Query: 258 SL 263
            L
Sbjct: 137 QL 138


  Database: RefSeqHP
    Posted date:  Aug 2, 2006 12:57 AM
  Number of letters in database: 17,774,539
  Number of sequences in database:  39,411
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 37,746,165
Number of Sequences: 39411
Number of extensions: 1362379
Number of successful extensions: 6901
Number of sequences better than 1.0e-05: 2
Number of HSP's better than  0.0 without gapping: 4263
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6747
length of database: 17,774,539
effective HSP length: 99
effective length of database: 13,872,850
effective search space used: 1942199000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

Search to RefSeqMP

BLASTX 2.2.10 [Oct-19-2004]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20060611S-037016
         (720 letters)

Database: RefSeqMP 
           45,328 sequences; 21,768,885 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|XP_998786.1| PREDICTED: similar to Glyceraldehyde-3-phosphat...    85   1e-26
Alignment   gi|XP_001002772.1| PREDICTED: similar to Glyceraldehyde-3-phosp...    85   1e-26
Alignment   gi|XP_899549.1| PREDICTED: similar to Glyceraldehyde-3-phosphat...    85   1e-26
Alignment   gi|NP_955766.1| glyceraldehyde-3-phosphate dehydrogenase (phosp...    85   1e-24
Alignment   gi|XP_922387.2| PREDICTED: similar to Glyceraldehyde-3-phosphat...   110   1e-24
Alignment   gi|XP_988596.1| PREDICTED: similar to Glyceraldehyde-3-phosphat...    78   5e-24
Alignment   gi|XP_001004821.1| PREDICTED: similar to Glyceraldehyde-3-phosp...    78   5e-24
Alignment   gi|XP_995982.1| PREDICTED: similar to Glyceraldehyde-3-phosphat...    77   2e-23
Alignment   gi|XP_920080.2| PREDICTED: similar to Glyceraldehyde-3-phosphat...    77   2e-23
Alignment   gi|XP_986001.1| PREDICTED: similar to Glyceraldehyde-3-phosphat...    77   2e-23

>ref|XP_998786.1| PREDICTED: similar to Glyceraldehyde-3-phosphate dehydrogenase
           (GAPDH) [Mus musculus]
          Length = 335

 Score = 84.7 bits (208), Expect(2) = 1e-26
 Identities = 48/67 (71%), Positives = 52/67 (77%), Gaps = 3/67 (4%)
 Frame = +3

Query: 72  MVKVGVNGFGRIGRLVTRAAFNS--GKVDIVAINDPFIDLHYMVYMVQYDSPR-EVPGTV 242
           MVKVGVNGFGRIGRLVTRAA  S  GKV+IVAINDPFIDL+YMVYM Q DS   +   TV
Sbjct: 1   MVKVGVNGFGRIGRLVTRAAVCSPLGKVEIVAINDPFIDLNYMVYMFQSDSTHGKFNSTV 60

Query: 243 KGKTGSL 263
           K + G L
Sbjct: 61  KAENGKL 67



 Score = 53.9 bits (128), Expect(2) = 1e-26
 Identities = 46/136 (33%), Positives = 58/136 (42%), Gaps = 8/136 (5%)
 Frame = +2

Query: 242 QGENGKLASMGRPHP-FPERNPPKSKGGERGPLSLGSPWGL-PKQEKGGAPLKGGAKRG* 415
           + ENGKL   G+P   F E +P   K G+ G   +    GL     K GA LKGGAKR  
Sbjct: 61  KAENGKLVINGKPITVFQELDPANIKWGDAGAEYVVESTGLFTTMGKAGAHLKGGAKRVI 120

Query: 416 FSAPFANAPGCVRGGTPENSDTPPKMRQ*APAPPKVLAPRGEGVL*TLSILRGRTMN--- 586
            SAP A+AP  V G   E  D   K+   A      LAP  + +     I+ G       
Sbjct: 121 ISAPSADAPMFVMGVNHEKYDNSLKIVSNASCTTNCLAPLAKVIHDNFGIVEGLMTTVHA 180

Query: 587 ---TGWVLFGPQKYGW 625
              T   + GP +  W
Sbjct: 181 ITATQMTVDGPSRKAW 196


>ref|XP_001002772.1| PREDICTED: similar to Glyceraldehyde-3-phosphate dehydrogenase
           (GAPDH) [Mus musculus]
          Length = 335

 Score = 84.7 bits (208), Expect(2) = 1e-26
 Identities = 48/67 (71%), Positives = 52/67 (77%), Gaps = 3/67 (4%)
 Frame = +3

Query: 72  MVKVGVNGFGRIGRLVTRAAFNS--GKVDIVAINDPFIDLHYMVYMVQYDSPR-EVPGTV 242
           MVKVGVNGFGRIGRLVTRAA  S  GKV+IVAINDPFIDL+YMVYM Q DS   +   TV
Sbjct: 1   MVKVGVNGFGRIGRLVTRAAVCSPLGKVEIVAINDPFIDLNYMVYMFQSDSTHGKFNSTV 60

Query: 243 KGKTGSL 263
           K + G L
Sbjct: 61  KAENGKL 67



 Score = 53.9 bits (128), Expect(2) = 1e-26
 Identities = 46/136 (33%), Positives = 58/136 (42%), Gaps = 8/136 (5%)
 Frame = +2

Query: 242 QGENGKLASMGRPHP-FPERNPPKSKGGERGPLSLGSPWGL-PKQEKGGAPLKGGAKRG* 415
           + ENGKL   G+P   F E +P   K G+ G   +    GL     K GA LKGGAKR  
Sbjct: 61  KAENGKLVINGKPITVFQELDPANIKWGDAGAEYVVESTGLFTTMGKAGAHLKGGAKRVI 120

Query: 416 FSAPFANAPGCVRGGTPENSDTPPKMRQ*APAPPKVLAPRGEGVL*TLSILRGRTMN--- 586
            SAP A+AP  V G   E  D   K+   A      LAP  + +     I+ G       
Sbjct: 121 ISAPSADAPMFVMGVNHEKYDNSLKIVSNASCTTNCLAPLAKVIHDNFGIVEGLMTTVHA 180

Query: 587 ---TGWVLFGPQKYGW 625
              T   + GP +  W
Sbjct: 181 ITATQMTVDGPSRKAW 196


>ref|XP_899549.1| PREDICTED: similar to Glyceraldehyde-3-phosphate dehydrogenase
           (GAPDH) [Mus musculus]
          Length = 335

 Score = 84.7 bits (208), Expect(2) = 1e-26
 Identities = 48/67 (71%), Positives = 52/67 (77%), Gaps = 3/67 (4%)
 Frame = +3

Query: 72  MVKVGVNGFGRIGRLVTRAAFNS--GKVDIVAINDPFIDLHYMVYMVQYDSPR-EVPGTV 242
           MVKVGVNGFGRIGRLVTRAA  S  GKV+IVAINDPFIDL+YMVYM Q DS   +   TV
Sbjct: 1   MVKVGVNGFGRIGRLVTRAAVCSPLGKVEIVAINDPFIDLNYMVYMFQSDSTHGKFNSTV 60

Query: 243 KGKTGSL 263
           K + G L
Sbjct: 61  KAENGKL 67



 Score = 53.9 bits (128), Expect(2) = 1e-26
 Identities = 46/136 (33%), Positives = 58/136 (42%), Gaps = 8/136 (5%)
 Frame = +2

Query: 242 QGENGKLASMGRPHP-FPERNPPKSKGGERGPLSLGSPWGL-PKQEKGGAPLKGGAKRG* 415
           + ENGKL   G+P   F E +P   K G+ G   +    GL     K GA LKGGAKR  
Sbjct: 61  KAENGKLVINGKPITVFQELDPANIKWGDAGAEYVVESTGLFTTMGKAGAHLKGGAKRVI 120

Query: 416 FSAPFANAPGCVRGGTPENSDTPPKMRQ*APAPPKVLAPRGEGVL*TLSILRGRTMN--- 586
            SAP A+AP  V G   E  D   K+   A      LAP  + +     I+ G       
Sbjct: 121 ISAPSADAPMFVMGVNHEKYDNSLKIVSNASCTTNCLAPLAKVIHDNFGIVEGLMTTVHA 180

Query: 587 ---TGWVLFGPQKYGW 625
              T   + GP +  W
Sbjct: 181 ITATQMTVDGPSRKAW 196


>ref|NP_955766.1| glyceraldehyde-3-phosphate dehydrogenase (phosphorylating)-like
           [Mus musculus]
          Length = 337

 Score = 85.1 bits (209), Expect(2) = 1e-24
 Identities = 47/67 (70%), Positives = 50/67 (74%), Gaps = 3/67 (4%)
 Frame = +3

Query: 72  MVKVGVNGFGRIGRLVTRAAFNS--GKVDIVAINDPFIDLHYMVYMVQYDSPR-EVPGTV 242
           MVK GVNGFG IGRLVTR A  S  GKV+IVAINDPFIDL YMVYM QYDS   +  GTV
Sbjct: 1   MVKAGVNGFGHIGRLVTRVAICSLHGKVEIVAINDPFIDLDYMVYMFQYDSTHSKFNGTV 60

Query: 243 KGKTGSL 263
           K + G L
Sbjct: 61  KAENGKL 67



 Score = 46.6 bits (109), Expect(2) = 1e-24
 Identities = 45/129 (34%), Positives = 56/129 (43%), Gaps = 4/129 (3%)
 Frame = +2

Query: 242 QGENGKLASMGRPHP-FPERN--PPKSKGGERGPLSLGSPWGL-PKQEKGGAPLKGGAKR 409
           + ENGKL   G+P   F ER+  PP  K  E     +    G+    EK GA LKGGAKR
Sbjct: 61  KAENGKLVINGKPITIFQERDCPPPNIKWDEASAEYVVESTGVFTTMEKAGAHLKGGAKR 120

Query: 410 G*FSAPFANAPGCVRGGTPENSDTPPKMRQ*APAPPKVLAPRGEGVL*TLSILRGRTMNT 589
              S   A+AP  V G   E  D   K+   A      LAP  + +     I+ G  M T
Sbjct: 121 VIISVRSADAPMFVMGVNHEKYDNSLKIVSNASCTTNCLAPLAKVIHDNFGIVEG-LMTT 179

Query: 590 GWVLFGPQK 616
              +   QK
Sbjct: 180 VHAITATQK 188


>ref|XP_922387.2| PREDICTED: similar to Glyceraldehyde-3-phosphate dehydrogenase
           (GAPDH) [Mus musculus]
          Length = 401

 Score =  110 bits (275), Expect = 1e-24
 Identities = 67/124 (54%), Positives = 83/124 (66%), Gaps = 5/124 (4%)
 Frame = +3

Query: 6   LLLPVRQTAVCSVHCQPRP*DTMVKVGVNGFGRIGRLVTRAAFNS--GKVDIVAINDPFI 179
           + L + ++   ++ CQPRP D MVKVGVNGFGRIGRLVTRAAF S  GKV+IVAINDPFI
Sbjct: 44  MFLMLARSYTAALMCQPRPVDKMVKVGVNGFGRIGRLVTRAAFCSPHGKVEIVAINDPFI 103

Query: 180 DLHYMVYMVQYDSPR-EVPGTVKGKTGSLP-QWEGLTLSRSGIPPNQR-GESGGPLVWGV 350
           DL+YMVYM QYDS   +  GTVK + G L    + +T+ +   P N + GE+G   V   
Sbjct: 104 DLNYMVYMFQYDSTHGKFNGTVKAENGKLVINGKPITVFQERDPTNIKCGEAGAEYVMES 163

Query: 351 PGGF 362
            G F
Sbjct: 164 TGVF 167


>ref|XP_988596.1| PREDICTED: similar to Glyceraldehyde-3-phosphate dehydrogenase
           (GAPDH) [Mus musculus]
          Length = 509

 Score = 77.8 bits (190), Expect(2) = 5e-24
 Identities = 43/60 (71%), Positives = 47/60 (78%), Gaps = 3/60 (5%)
 Frame = +3

Query: 93  GFGRIGRLVTRAAFNS--GKVDIVAINDPFIDLHYMVYMVQYDSPR-EVPGTVKGKTGSL 263
           GFGRIGRLVTRAA  S  GKV+IVAINDPFIDL+YMVYM QYDS   +  GTVK + G L
Sbjct: 182 GFGRIGRLVTRAAICSPHGKVEIVAINDPFIDLNYMVYMFQYDSTHGKFNGTVKAENGKL 241



 Score = 51.6 bits (122), Expect(2) = 5e-24
 Identities = 45/127 (35%), Positives = 57/127 (44%), Gaps = 2/127 (1%)
 Frame = +2

Query: 242 QGENGKLASMGRPHP-FPERNPPKSKGGERGPLSLGSPWGL-PKQEKGGAPLKGGAKRG* 415
           + ENGKL   G+P   F ER+P   K G+     +    G+    EK GA LKG AKR  
Sbjct: 235 KAENGKLVINGKPITIFQERDPTNIKWGDASVEYVVESTGVFTTMEKAGAHLKGRAKRVI 294

Query: 416 FSAPFANAPGCVRGGTPENSDTPPKMRQ*APAPPKVLAPRGEGVL*TLSILRGRTMNTGW 595
            SAP A+AP  V G   E  D   K+   A      LAP  + +     I+ G  M T  
Sbjct: 295 ISAPSADAPMFVMGVNHEKYDNSLKIVSNASCTTNCLAPLAKVIHDNFGIVEG-LMTTVL 353

Query: 596 VLFGPQK 616
            +   QK
Sbjct: 354 AITATQK 360


>ref|XP_001004821.1| PREDICTED: similar to Glyceraldehyde-3-phosphate dehydrogenase
           (GAPDH) [Mus musculus]
          Length = 509

 Score = 77.8 bits (190), Expect(2) = 5e-24
 Identities = 43/60 (71%), Positives = 47/60 (78%), Gaps = 3/60 (5%)
 Frame = +3

Query: 93  GFGRIGRLVTRAAFNS--GKVDIVAINDPFIDLHYMVYMVQYDSPR-EVPGTVKGKTGSL 263
           GFGRIGRLVTRAA  S  GKV+IVAINDPFIDL+YMVYM QYDS   +  GTVK + G L
Sbjct: 182 GFGRIGRLVTRAAICSPHGKVEIVAINDPFIDLNYMVYMFQYDSTHGKFNGTVKAENGKL 241



 Score = 51.6 bits (122), Expect(2) = 5e-24
 Identities = 45/127 (35%), Positives = 57/127 (44%), Gaps = 2/127 (1%)
 Frame = +2

Query: 242 QGENGKLASMGRPHP-FPERNPPKSKGGERGPLSLGSPWGL-PKQEKGGAPLKGGAKRG* 415
           + ENGKL   G+P   F ER+P   K G+     +    G+    EK GA LKG AKR  
Sbjct: 235 KAENGKLVINGKPITIFQERDPTNIKWGDASVEYVVESTGVFTTMEKAGAHLKGRAKRVI 294

Query: 416 FSAPFANAPGCVRGGTPENSDTPPKMRQ*APAPPKVLAPRGEGVL*TLSILRGRTMNTGW 595
            SAP A+AP  V G   E  D   K+   A      LAP  + +     I+ G  M T  
Sbjct: 295 ISAPSADAPMFVMGVNHEKYDNSLKIVSNASCTTNCLAPLAKVIHDNFGIVEG-LMTTVL 353

Query: 596 VLFGPQK 616
            +   QK
Sbjct: 354 AITATQK 360


>ref|XP_995982.1| PREDICTED: similar to Glyceraldehyde-3-phosphate dehydrogenase
           (GAPDH) [Mus musculus]
          Length = 343

 Score = 76.6 bits (187), Expect(2) = 2e-23
 Identities = 41/62 (66%), Positives = 48/62 (77%), Gaps = 3/62 (4%)
 Frame = +3

Query: 87  VNGFGRIGRLVTRAAFNS--GKVDIVAINDPFIDLHYMVYMVQYDSPR-EVPGTVKGKTG 257
           VNGFG IGRL+TRAAF S  GKV++VAINDPFIDL+YM+YM Q DS   +  GTVK + G
Sbjct: 14  VNGFGHIGRLITRAAFCSPHGKVEVVAINDPFIDLNYMLYMFQSDSTHGKFNGTVKAENG 73

Query: 258 SL 263
            L
Sbjct: 74  KL 75



 Score = 50.8 bits (120), Expect(2) = 2e-23
 Identities = 44/127 (34%), Positives = 56/127 (44%), Gaps = 2/127 (1%)
 Frame = +2

Query: 242 QGENGKLASMGRPHP-FPERNPPKSKGGERGPLSLGSPWGL-PKQEKGGAPLKGGAKRG* 415
           + ENGKL    +P   F ER+P   K GE     +    G+    EK GA LKGGAKR  
Sbjct: 69  KAENGKLVINRKPITIFQERDPANIKWGEASAEYVVESTGVFTTMEKAGAHLKGGAKRVI 128

Query: 416 FSAPFANAPGCVRGGTPENSDTPPKMRQ*APAPPKVLAPRGEGVL*TLSILRGRTMNTGW 595
            SAP A+ P  V G   +  D   K+   A      LAP  + +     I+ G  M T  
Sbjct: 129 ISAPSADTPMFVMGVNQKKYDNSLKIASNASCTTNCLAPLAKVIHDNCGIVEG-LMTTVH 187

Query: 596 VLFGPQK 616
            +   QK
Sbjct: 188 AITATQK 194


>ref|XP_920080.2| PREDICTED: similar to Glyceraldehyde-3-phosphate dehydrogenase
           (GAPDH) [Mus musculus]
          Length = 343

 Score = 76.6 bits (187), Expect(2) = 2e-23
 Identities = 41/62 (66%), Positives = 48/62 (77%), Gaps = 3/62 (4%)
 Frame = +3

Query: 87  VNGFGRIGRLVTRAAFNS--GKVDIVAINDPFIDLHYMVYMVQYDSPR-EVPGTVKGKTG 257
           VNGFG IGRL+TRAAF S  GKV++VAINDPFIDL+YM+YM Q DS   +  GTVK + G
Sbjct: 14  VNGFGHIGRLITRAAFCSPHGKVEVVAINDPFIDLNYMLYMFQSDSTHGKFNGTVKAENG 73

Query: 258 SL 263
            L
Sbjct: 74  KL 75



 Score = 50.8 bits (120), Expect(2) = 2e-23
 Identities = 44/127 (34%), Positives = 56/127 (44%), Gaps = 2/127 (1%)
 Frame = +2

Query: 242 QGENGKLASMGRPHP-FPERNPPKSKGGERGPLSLGSPWGL-PKQEKGGAPLKGGAKRG* 415
           + ENGKL    +P   F ER+P   K GE     +    G+    EK GA LKGGAKR  
Sbjct: 69  KAENGKLVINRKPITIFQERDPANIKWGEASAEYVVESTGVFTTMEKAGAHLKGGAKRVI 128

Query: 416 FSAPFANAPGCVRGGTPENSDTPPKMRQ*APAPPKVLAPRGEGVL*TLSILRGRTMNTGW 595
            SAP A+ P  V G   +  D   K+   A      LAP  + +     I+ G  M T  
Sbjct: 129 ISAPSADTPMFVMGVNQKKYDNSLKIASNASCTTNCLAPLAKVIHDNCGIVEG-LMTTVH 187

Query: 596 VLFGPQK 616
            +   QK
Sbjct: 188 AITATQK 194


>ref|XP_986001.1| PREDICTED: similar to Glyceraldehyde-3-phosphate dehydrogenase
           (GAPDH) [Mus musculus]
          Length = 343

 Score = 76.6 bits (187), Expect(2) = 2e-23
 Identities = 41/62 (66%), Positives = 48/62 (77%), Gaps = 3/62 (4%)
 Frame = +3

Query: 87  VNGFGRIGRLVTRAAFNS--GKVDIVAINDPFIDLHYMVYMVQYDSPR-EVPGTVKGKTG 257
           VNGFG IGRL+TRAAF S  GKV++VAINDPFIDL+YM+YM Q DS   +  GTVK + G
Sbjct: 14  VNGFGHIGRLITRAAFCSPHGKVEVVAINDPFIDLNYMLYMFQSDSTHGKFNGTVKAENG 73

Query: 258 SL 263
            L
Sbjct: 74  KL 75



 Score = 50.8 bits (120), Expect(2) = 2e-23
 Identities = 44/127 (34%), Positives = 56/127 (44%), Gaps = 2/127 (1%)
 Frame = +2

Query: 242 QGENGKLASMGRPHP-FPERNPPKSKGGERGPLSLGSPWGL-PKQEKGGAPLKGGAKRG* 415
           + ENGKL    +P   F ER+P   K GE     +    G+    EK GA LKGGAKR  
Sbjct: 69  KAENGKLVINRKPITIFQERDPANIKWGEASAEYVVESTGVFTTMEKAGAHLKGGAKRVI 128

Query: 416 FSAPFANAPGCVRGGTPENSDTPPKMRQ*APAPPKVLAPRGEGVL*TLSILRGRTMNTGW 595
            SAP A+ P  V G   +  D   K+   A      LAP  + +     I+ G  M T  
Sbjct: 129 ISAPSADTPMFVMGVNQKKYDNSLKIASNASCTTNCLAPLAKVIHDNCGIVEG-LMTTVH 187

Query: 596 VLFGPQK 616
            +   QK
Sbjct: 188 AITATQK 194


  Database: RefSeqMP
    Posted date:  Aug 2, 2006 12:58 AM
  Number of letters in database: 21,768,885
  Number of sequences in database:  45,328
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 43,297,213
Number of Sequences: 45328
Number of extensions: 1441285
Number of successful extensions: 7119
Number of sequences better than 1.0e-05: 10
Number of HSP's better than  0.0 without gapping: 4716
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6895
length of database: 21,768,885
effective HSP length: 100
effective length of database: 17,236,085
effective search space used: 2395815815
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

Search to RefSeqCP

BLASTX 2.2.10 [Oct-19-2004]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20060611S-037016
         (720 letters)

Database: RefSeqCP 
           33,732 sequences; 19,266,565 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|XP_549000.2| PREDICTED: similar to Glyceraldehyde-3-phosphat...   106   1e-31
Alignment   gi|XP_852742.1| PREDICTED: similar to glyceraldehyde-3-phosphat...   100   2e-30
Alignment   gi|XP_534110.2| PREDICTED: similar to Glyceraldehyde-3-phosphat...   103   6e-30
Alignment   gi|XP_534639.1| PREDICTED: similar to glyceraldehyde-3-phosphat...    96   3e-29
Alignment   gi|XP_854309.1| PREDICTED: similar to Glyceraldehyde-3-phosphat...    96   2e-27
Alignment   gi|XP_852804.1| PREDICTED: similar to Glyceraldehyde-3-phosphat...    90   7e-27
Alignment   gi|XP_850278.1| PREDICTED: similar to Glyceraldehyde-3-phosphat...    96   3e-26
Alignment   gi|XP_855282.1| PREDICTED: similar to Glyceraldehyde-3-phosphat...    96   2e-25
Alignment   gi|XP_854979.1| PREDICTED: similar to Glyceraldehyde-3-phosphat...    92   5e-25
Alignment   gi|XP_848762.1| PREDICTED: similar to glyceraldehyde-3-phosphat...   106   2e-23

>ref|XP_549000.2| PREDICTED: similar to Glyceraldehyde-3-phosphate dehydrogenase
           (GAPDH) [Canis familiaris]
          Length = 344

 Score =  106 bits (265), Expect(2) = 1e-31
 Identities = 55/75 (73%), Positives = 59/75 (78%), Gaps = 1/75 (1%)
 Frame = +3

Query: 42  VHCQPRP*DTMVKVGVNGFGRIGRLVTRAAFNSGKVDIVAINDPFIDLHYMVYMVQYDSP 221
           V CQP P DTMVKVGVNGFGRIG LVTRAA NSGK+DIVAIND FIDL+YMVYM QYDS 
Sbjct: 14  VQCQPHPGDTMVKVGVNGFGRIGHLVTRAALNSGKMDIVAINDTFIDLNYMVYMFQYDST 73

Query: 222 R-EVPGTVKGKTGSL 263
             +  GTVK +   L
Sbjct: 74  HGKFHGTVKAENRKL 88



 Score = 48.1 bits (113), Expect(2) = 1e-31
 Identities = 45/127 (35%), Positives = 56/127 (44%), Gaps = 2/127 (1%)
 Frame = +2

Query: 242 QGENGKLASMGRPHP-FPERNPPKSKGGERGPLSLGSPWGL-PKQEKGGAPLKGGAKRG* 415
           + EN KL   G+    F ERNP   K G+ G   +    G+    EK GA LKGGAKR  
Sbjct: 82  KAENRKLVINGKSISIFQERNPYNIKWGDAGAEYVVESAGVFTTMEKAGAHLKGGAKRVI 141

Query: 416 FSAPFANAPGCVRGGTPENSDTPPKMRQ*APAPPKVLAPRGEGVL*TLSILRGRTMNTGW 595
            SA  A AP  V G   E  D   K+   A      LAP  + +     I+ G  M T  
Sbjct: 142 ISASSAEAPMFVMGMNHEKYDNSLKIVSNASCTTNWLAPLAKVIHGHFGIVEG-LMTTVH 200

Query: 596 VLFGPQK 616
           ++   QK
Sbjct: 201 IITATQK 207


>ref|XP_852742.1| PREDICTED: similar to glyceraldehyde-3-phosphate dehydrogenase
           [Canis familiaris]
          Length = 275

 Score =  100 bits (248), Expect(2) = 2e-30
 Identities = 51/65 (78%), Positives = 55/65 (84%), Gaps = 1/65 (1%)
 Frame = +3

Query: 72  MVKVGVNGFGRIGRLVTRAAFNSGKVDIVAINDPFIDLHYMVYMVQYDSPR-EVPGTVKG 248
           MVKVGVNGFGRIG +VTRAAFNSGKVDIVAINDPFIDL+YMVYM QYDS   +  GTVK 
Sbjct: 1   MVKVGVNGFGRIGHVVTRAAFNSGKVDIVAINDPFIDLNYMVYMFQYDSTHGKFHGTVKA 60

Query: 249 KTGSL 263
           + G L
Sbjct: 61  ENGKL 65



 Score = 50.4 bits (119), Expect(2) = 2e-30
 Identities = 46/137 (33%), Positives = 58/137 (42%), Gaps = 8/137 (5%)
 Frame = +2

Query: 242 QGENGKLASMGRPHP-FPERNPPKSKGGERGPLSLGSPWGL-PKQEKGGAPLKGGAKRG* 415
           + ENGKL   G+    F ER+P   K  + G   +    G+    EK GA LKGGAKR  
Sbjct: 59  KAENGKLVIGGKSISIFQERDPANIKWDDAGAEYVVESTGVFTTMEKAGAHLKGGAKRII 118

Query: 416 FSAPFANAPGCVRGGTPENSDTPPKMRQ*APAPPKVLAPRGEGVL*TLSILRGRTMN--- 586
            SAP A+AP  V G   E  D   K+   A      LAP  + +     I+ G       
Sbjct: 119 ISAPSADAPMFVMGVNHEKYDNSLKIVSNASCTTNCLAPLAKVIHDHFGIVEGLMTTVHA 178

Query: 587 ---TGWVLFGPQKYGWC 628
              T   + GP    WC
Sbjct: 179 ITATQKTVDGPSGKLWC 195


>ref|XP_534110.2| PREDICTED: similar to Glyceraldehyde-3-phosphate dehydrogenase,
           liver (GAPDH) [Canis familiaris]
          Length = 137

 Score =  103 bits (258), Expect(2) = 6e-30
 Identities = 53/65 (81%), Positives = 57/65 (87%), Gaps = 1/65 (1%)
 Frame = +3

Query: 72  MVKVGVNGFGRIGRLVTRAAFNSGKVDIVAINDPFIDLHYMVYMVQYDSPR-EVPGTVKG 248
           MVKVGVNGFGRIGRLVTRAAFNSGKVDIVAINDPFIDL+YMVYM QYDS   ++ GTVK 
Sbjct: 1   MVKVGVNGFGRIGRLVTRAAFNSGKVDIVAINDPFIDLNYMVYMFQYDSTHGKLHGTVKA 60

Query: 249 KTGSL 263
           + G L
Sbjct: 61  ENGKL 65



 Score = 45.4 bits (106), Expect(2) = 6e-30
 Identities = 32/74 (43%), Positives = 40/74 (54%), Gaps = 2/74 (2%)
 Frame = +2

Query: 242 QGENGKLASMGRPHP-FPERNPPKSKGGERGPLSLGSPWGL-PKQEKGGAPLKGGAKRG* 415
           + ENGKL   G+    F E++P   K G+ G   +    G+    EK GA LKGGAKR  
Sbjct: 59  KAENGKLVINGKSISIFQEQDPADIKWGDAGAEYVVESTGVFTTMEKAGAHLKGGAKRVI 118

Query: 416 FSAPFANAPGCVRG 457
            SAP A+AP  V G
Sbjct: 119 ISAPSADAPMFVMG 132


>ref|XP_534639.1| PREDICTED: similar to glyceraldehyde-3-phosphate dehydrogenase
           [Canis familiaris]
          Length = 334

 Score = 95.5 bits (236), Expect(2) = 3e-29
 Identities = 50/65 (76%), Positives = 53/65 (81%), Gaps = 1/65 (1%)
 Frame = +3

Query: 72  MVKVGVNGFGRIGRLVTRAAFNSGKVDIVAINDPFIDLHYMVYMVQYDSPR-EVPGTVKG 248
           MVKV VNGFG IGRLVTR AFNSGKVDIVAINDPFIDL+YMVYM QYDS   +  GTVK 
Sbjct: 2   MVKVRVNGFGCIGRLVTRTAFNSGKVDIVAINDPFIDLNYMVYMFQYDSTHGKFHGTVKA 61

Query: 249 KTGSL 263
           + G L
Sbjct: 62  ENGKL 66



 Score = 51.2 bits (121), Expect(2) = 3e-29
 Identities = 40/99 (40%), Positives = 48/99 (48%), Gaps = 2/99 (2%)
 Frame = +2

Query: 242 QGENGKLASMGRPHP-FPERNPPKSKGGERGPLSLGSPWGL-PKQEKGGAPLKGGAKRG* 415
           + ENGKL   G+    F ER+P   K G+ G   +    G+    EK GA LKGGAKR  
Sbjct: 60  KAENGKLIINGKSISIFQERDPANIKWGDAGAEYVVESTGVFTTMEKVGAHLKGGAKRVI 119

Query: 416 FSAPFANAPGCVRGGTPENSDTPPKMRQ*APAPPKVLAP 532
            SAP A+AP  V G   E  D   K+   A      LAP
Sbjct: 120 ISAPSADAPMFVMGVNHEKYDNSLKIVSNASCTTNCLAP 158


>ref|XP_854309.1| PREDICTED: similar to Glyceraldehyde-3-phosphate dehydrogenase,
           liver (GAPDH) [Canis familiaris]
          Length = 196

 Score = 95.9 bits (237), Expect(2) = 2e-27
 Identities = 50/65 (76%), Positives = 54/65 (83%), Gaps = 1/65 (1%)
 Frame = +3

Query: 72  MVKVGVNGFGRIGRLVTRAAFNSGKVDIVAINDPFIDLHYMVYMVQYDSPR-EVPGTVKG 248
           MVKVGVNGFG IGRLVTRAAFNSGKVD+VAIND FIDL+YMVYM QYDS   +  GTVK 
Sbjct: 2   MVKVGVNGFGCIGRLVTRAAFNSGKVDLVAINDHFIDLNYMVYMFQYDSTHGKFHGTVKA 61

Query: 249 KTGSL 263
           + G L
Sbjct: 62  ENGKL 66



 Score = 44.7 bits (104), Expect(2) = 2e-27
 Identities = 36/99 (36%), Positives = 45/99 (45%), Gaps = 2/99 (2%)
 Frame = +2

Query: 242 QGENGKLASMGRPHP-FPERNPPKSKGGERGPLSLGSPWGL-PKQEKGGAPLKGGAKRG* 415
           + ENGKL   G+    F E++P   K G+ G        G+    EK G PLKG AKR  
Sbjct: 60  KAENGKLVINGKSISIFQEQDPTNIKWGDAGAEYFVESTGVFTTMEKAGDPLKGRAKRVI 119

Query: 416 FSAPFANAPGCVRGGTPENSDTPPKMRQ*APAPPKVLAP 532
            S P A+AP  V G   E  +   K+   A      LAP
Sbjct: 120 ISTPSADAPMFVMGVNHEKYNNSLKIVSNASCITNCLAP 158


>ref|XP_852804.1| PREDICTED: similar to Glyceraldehyde-3-phosphate dehydrogenase,
           liver (GAPDH) [Canis familiaris]
          Length = 351

 Score = 89.7 bits (221), Expect(2) = 7e-27
 Identities = 46/67 (68%), Positives = 54/67 (80%), Gaps = 1/67 (1%)
 Frame = +3

Query: 66  DTMVKVGVNGFGRIGRLVTRAAFNSGKVDIVAINDPFIDLHYMVYMVQYDSPR-EVPGTV 242
           +T+VKVGVN FGRIG LVT AAFNSGKVD VAINDPFI+L+Y+VYM QYDS   +   TV
Sbjct: 18  ETIVKVGVNRFGRIGHLVTTAAFNSGKVDTVAINDPFINLNYIVYMFQYDSTHSKFHSTV 77

Query: 243 KGKTGSL 263
           K + G+L
Sbjct: 78  KARIGNL 84



 Score = 49.3 bits (116), Expect(2) = 7e-27
 Identities = 42/122 (34%), Positives = 53/122 (43%), Gaps = 1/122 (0%)
 Frame = +2

Query: 254 GKLASMGRPHPFPERNPPKSKGGERGPLSLGSPWGL-PKQEKGGAPLKGGAKRG*FSAPF 430
           G L+SMG P P   R+P   K  + G   +    G+    EK GA LKGGAKR    AP 
Sbjct: 82  GNLSSMGSPSPSSRRDPANIKWCDAGAEYVVESTGIFTTMEKAGAHLKGGAKRVIIFAPS 141

Query: 431 ANAPGCVRGGTPENSDTPPKMRQ*APAPPKVLAPRGEGVL*TLSILRGRTMNTGWVLFGP 610
           A+    V G   E  D   K+   A      LAP  + +    SI+ G  M T   +   
Sbjct: 142 ADVAMFVMGVNHEKCDNSFKIVSNASCTTNCLAPLAKVIHDHFSIVEG-LMTTVHAITAT 200

Query: 611 QK 616
           QK
Sbjct: 201 QK 202


>ref|XP_850278.1| PREDICTED: similar to Glyceraldehyde-3-phosphate dehydrogenase,
           liver (GAPDH) [Canis familiaris]
          Length = 281

 Score = 95.9 bits (237), Expect(2) = 3e-26
 Identities = 49/65 (75%), Positives = 53/65 (81%), Gaps = 1/65 (1%)
 Frame = +3

Query: 72  MVKVGVNGFGRIGRLVTRAAFNSGKVDIVAINDPFIDLHYMVYMVQYDSPR-EVPGTVKG 248
           MVK GVNGFGRIG LVTRAAFNSGKVDIVAINDPFIDL+YMVYM QYDS   +  GT+  
Sbjct: 2   MVKAGVNGFGRIGCLVTRAAFNSGKVDIVAINDPFIDLNYMVYMFQYDSTHGKFHGTIMA 61

Query: 249 KTGSL 263
           + G L
Sbjct: 62  ENGKL 66



 Score = 41.2 bits (95), Expect(2) = 3e-26
 Identities = 39/112 (34%), Positives = 49/112 (43%), Gaps = 3/112 (2%)
 Frame = +2

Query: 248 ENGKLASMGRPHP-FPERNPPKSKGGERGPLSLGSPWGL-PKQEKGGAPLKGGAKRG*FS 421
           ENGKL    +    F E+ P   K G+     +    G+    EK GA LKGGAKR   S
Sbjct: 62  ENGKLVINRKSISIFQEQGPTNIKWGDADAKYVVESTGVFTTMEKAGAHLKGGAKRVIIS 121

Query: 422 APFANAPGCVRGGTPENSDTPPK-MRQ*APAPPKVLAPRGEGVL*TLSILRG 574
            P A+AP  V G   E  D   K +   A      LAP  + +    SI+ G
Sbjct: 122 VPSADAPTFVLGVNHEKYDNSLKIIVSNASCTTNCLAPLAKVIHDHFSIMEG 173


>ref|XP_855282.1| PREDICTED: similar to Glyceraldehyde-3-phosphate dehydrogenase,
           liver (GAPDH) [Canis familiaris]
          Length = 137

 Score = 96.3 bits (238), Expect(2) = 2e-25
 Identities = 50/65 (76%), Positives = 54/65 (83%), Gaps = 1/65 (1%)
 Frame = +3

Query: 72  MVKVGVNGFGRIGRLVTRAAFNSGKVDIVAINDPFIDLHYMVYMVQYDSPR-EVPGTVKG 248
           MVKV VNGFGRIGRLVTRAAFNS KVD VAINDPFIDL+YMVYM+QYDS   +  GTVK 
Sbjct: 1   MVKVRVNGFGRIGRLVTRAAFNSAKVDTVAINDPFIDLNYMVYMLQYDSTHSKFHGTVKA 60

Query: 249 KTGSL 263
           + G L
Sbjct: 61  ENGRL 65



 Score = 38.1 bits (87), Expect(2) = 2e-25
 Identities = 30/78 (38%), Positives = 39/78 (50%), Gaps = 2/78 (2%)
 Frame = +2

Query: 242 QGENGKLASMGRP-HPFPERNPPKSKGGERGPLSLGSPWGL-PKQEKGGAPLKGGAKRG* 415
           + ENG+L    +    F ER+P   K G+ G   +    G+    EK GA L G AKR  
Sbjct: 59  KAENGRLGINRKSIFIFQERDPTNIKWGDAGAEYVVESIGVFATMEKAGAHLTGRAKRVI 118

Query: 416 FSAPFANAPGCVRGGTPE 469
            SAP A+AP  V G + E
Sbjct: 119 ISAPSADAPMFVMGRSHE 136


>ref|XP_854979.1| PREDICTED: similar to Glyceraldehyde-3-phosphate dehydrogenase,
           liver (GAPDH) [Canis familiaris]
          Length = 267

 Score = 92.0 bits (227), Expect(2) = 5e-25
 Identities = 44/49 (89%), Positives = 47/49 (95%)
 Frame = +3

Query: 72  MVKVGVNGFGRIGRLVTRAAFNSGKVDIVAINDPFIDLHYMVYMVQYDS 218
           MVKVGVNGFGRIG LVTRAAFNSGK++IVAINDPFIDL+YMVYM QYDS
Sbjct: 1   MVKVGVNGFGRIGHLVTRAAFNSGKMNIVAINDPFIDLNYMVYMFQYDS 49



 Score = 40.8 bits (94), Expect(2) = 5e-25
 Identities = 29/69 (42%), Positives = 36/69 (52%), Gaps = 2/69 (2%)
 Frame = +2

Query: 242 QGENGKLASMGRPHP-FPERNPPKSKGGERGPLSLGSPWGL-PKQEKGGAPLKGGAKRG* 415
           + EN KL   G+    F ER+P   K G+ G   +    G+    EK G  LKGGAKR  
Sbjct: 59  KAENRKLVINGKSISIFQERDPANIKWGDAGAEYVVESTGVFTTMEKAGDHLKGGAKRDI 118

Query: 416 FSAPFANAP 442
            SAP A+AP
Sbjct: 119 VSAPSADAP 127


>ref|XP_848762.1| PREDICTED: similar to glyceraldehyde-3-phosphate dehydrogenase
           [Canis familiaris]
          Length = 236

 Score =  106 bits (264), Expect = 2e-23
 Identities = 61/100 (61%), Positives = 71/100 (71%), Gaps = 3/100 (3%)
 Frame = +3

Query: 72  MVKVGVNGFGRIGRLVTRAAFNSGKVDIVAINDPFIDLHYMVYMVQYDSPR-EVPGTVKG 248
           MVKVGVNGFGRIGRLVTRAAFNSGKVDIVAINDPFIDLHYMVYM QYDS   +  GTVK 
Sbjct: 1   MVKVGVNGFGRIGRLVTRAAFNSGKVDIVAINDPFIDLHYMVYMFQYDSTHSKFHGTVKA 60

Query: 249 KTGSLP-QWEGLTLSRSGIPPNQR-GESGGPLVWGVPGGF 362
           + G L    + +++ +   P N + G++G   V    G F
Sbjct: 61  ENGKLVINGKSISIFQEQDPANIKWGDAGAEYVVESTGVF 100



 Score = 51.6 bits (122), Expect = 7e-07
 Identities = 45/127 (35%), Positives = 58/127 (45%), Gaps = 2/127 (1%)
 Frame = +2

Query: 242 QGENGKLASMGRPHP-FPERNPPKSKGGERGPLSLGSPWGL-PKQEKGGAPLKGGAKRG* 415
           + ENGKL   G+    F E++P   K G+ G   +    G+    EK GA LKGGAKR  
Sbjct: 59  KAENGKLVINGKSISIFQEQDPANIKWGDAGAEYVVESTGVFTTMEKAGAHLKGGAKRVI 118

Query: 416 FSAPFANAPGCVRGGTPENSDTPPKMRQ*APAPPKVLAPRGEGVL*TLSILRGRTMNTGW 595
            SAP A+AP  V G   E  D   K+   A      LAP  + +     I+ G  M T  
Sbjct: 119 ISAPSADAPMFVMGVNQEKYDHSLKIVSNASCTTNCLAPLAKVIHDHFGIVEG-LMTTVH 177

Query: 596 VLFGPQK 616
            +   QK
Sbjct: 178 AITATQK 184


  Database: RefSeqCP
    Posted date:  Aug 1, 2006  9:25 PM
  Number of letters in database: 19,266,565
  Number of sequences in database:  33,732
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 38,734,307
Number of Sequences: 33732
Number of extensions: 1338847
Number of successful extensions: 6985
Number of sequences better than 1.0e-05: 10
Number of HSP's better than  0.0 without gapping: 4549
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6851
length of database: 19,266,565
effective HSP length: 100
effective length of database: 15,893,365
effective search space used: 2209177735
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)