BLASTX 2.2.10 [Oct-19-2004]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20060611S-041111
(832 letters)
Database: RefSeqSP
1040 sequences; 434,620 total letters
Searching...done
***** No hits found ******
Database: RefSeqSP
Posted date: Aug 1, 2006 7:14 PM
Number of letters in database: 434,620
Number of sequences in database: 1040
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 796,819
Number of Sequences: 1040
Number of extensions: 20767
Number of successful extensions: 56
Number of sequences better than 1.0e-05: 0
Number of HSP's better than 0.0 without gapping: 55
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 56
length of database: 434,620
effective HSP length: 75
effective length of database: 356,620
effective search space used: 71680620
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
Search to RefSeqBP
BLASTX 2.2.10 [Oct-19-2004]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20060611S-041111
(832 letters)
Database: RefSeqBP
33,508 sequences; 16,112,626 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001012698.2| major histocompatibility complex, class II, ... 157 9e-39
Alignment gi|NP_001029840.2| MHC class II antigen [Bos taurus] 136 2e-32
Alignment gi|NP_001012694.1| major histocompatibility complex, class II, ... 132 4e-31
Alignment gi|XP_582099.2| PREDICTED: similar to major histocompatibility ... 130 9e-31
Alignment gi|NP_001013618.1| major histocompatibility complex, class II, ... 116 2e-26
Alignment gi|NP_001012697.1| major histocompatibility complex, class II, ... 115 3e-26
Alignment gi|XP_876139.1| PREDICTED: similar to H-2 class II histocompati... 108 4e-24
Alignment gi|XP_874766.1| PREDICTED: similar to HLA class II histocompati... 74 2e-13
>ref|NP_001012698.2| major histocompatibility complex, class II, DRB3 [Bos taurus]
Length = 266
Score = 157 bits (397), Expect = 9e-39
Identities = 88/195 (45%), Positives = 113/195 (57%)
Frame = +1
Query: 97 LCVSRGFWRAAQTVMLVVLSRLMALGRDTPLNFLYLLKFQCRFLNGTQRAKLLERQHHGA 276
L S G W AA VML+VL +A R+ +FL K +C F NGT+R + L+R +
Sbjct: 4 LYFSGGSWMAALIVMLMVLCPPLAWAREIQPHFLEYYKGECHFFNGTERVRFLDRHFYNG 63
Query: 277 *EYVRFNGDMCEYQEVHELGPPVAHDRRCQNEVLDHKLVEVDT*CIQDSRTSVYFLVTRQ 456
E+VRF+ D E++ V ELG P A Q + L+ K EVD C + F V R+
Sbjct: 64 EEFVRFDSDWGEFRAVTELGRPAAEHWNSQKDFLEQKRAEVDRVCRHNYGGVESFTVQRR 123
Query: 457 VDPIVTVYREKHPLLQRQNILVCSVTGFYTCSW*VRLFRNALQEDAGVVSTDLVPTGDWT 636
V+P VTVY K LQ N+LVCSV GFY VR FRN +E+AGV+ST L+ GDWT
Sbjct: 124 VEPTVTVYPAKTQPLQHHNLLVCSVNGFYPGHIEVRWFRNGHEEEAGVISTGLIQNGDWT 183
Query: 637 LHTLVMLLTVPTCGK 681
T+VML TVP G+
Sbjct: 184 FQTMVMLETVPQSGE 198
>ref|NP_001029840.2| MHC class II antigen [Bos taurus]
Length = 261
Score = 136 bits (342), Expect = 2e-32
Identities = 79/194 (40%), Positives = 104/194 (53%)
Frame = +1
Query: 97 LCVSRGFWRAAQTVMLVVLSRLMALGRDTPLNFLYLLKFQCRFLNGTQRAKLLERQHHGA 276
L + RG W A V LV+LS A GRD+P +F+ K C F NGT+R + + R +
Sbjct: 7 LWIPRGLWTAVVMVTLVMLSTPGAEGRDSPKDFVVQFKGLCYFTNGTERVRYVTRYIYNQ 66
Query: 277 *EYVRFNGDMCEYQEVHELGPPVAHDRRCQNEVLDHKLVEVDT*CIQDSRTSVYFLVTRQ 456
EYVRF+ D Y+ + LG P A Q + L+ E DT C + + + + R+
Sbjct: 67 EEYVRFDSDWDLYRALTPLGRPDAEYWNSQKDFLEQTRAEADTVCRHNYQAELITSLQRR 126
Query: 457 VDPIVTVYREKHPLLQRQNILVCSVTGFYTCSW*VRLFRNALQEDAGVVSTDLVPTGDWT 636
V+P VT+ + L N+LVCSVT FY VR FRN +E AGVVST L+ GDWT
Sbjct: 127 VEPTVTISPSRTEALNHHNLLVCSVTDFYPSQIKVRWFRNDREETAGVVSTPLIRNGDWT 186
Query: 637 LHTLVMLLTVPTCG 678
LVML P G
Sbjct: 187 FQILVMLEMTPQRG 200
>ref|NP_001012694.1| major histocompatibility complex, class II, DQ beta [Bos taurus]
Length = 261
Score = 132 bits (331), Expect = 4e-31
Identities = 76/194 (39%), Positives = 105/194 (54%)
Frame = +1
Query: 97 LCVSRGFWRAAQTVMLVVLSRLMALGRDTPLNFLYLLKFQCRFLNGTQRAKLLERQHHGA 276
L + RG W AA V L VLS A GRD+P + + QC F NGT+R + + R +
Sbjct: 7 LRIPRGLWTAAVMVTLAVLSTPGAEGRDSPQDTVVHFMGQCYFTNGTERVRYVTRYIYNQ 66
Query: 277 *EYVRFNGDMCEYQEVHELGPPVAHDRRCQNEVLDHKLVEVDT*CIQDSRTSVYFLVTRQ 456
E ++ D+ EY+ V +LG +A Q ++L+ E+DT C + + V + RQ
Sbjct: 67 EETAYYDSDVGEYRAVTQLGRTLAEYWNSQKDILEQTRAELDTVCRHNYQLEVITSLQRQ 126
Query: 457 VDPIVTVYREKHPLLQRQNILVCSVTGFYTCSW*VRLFRNALQEDAGVVSTDLVPTGDWT 636
V+P VT+ + L N+LVCSVT FY VR F+N +E AG+VST L+ GDWT
Sbjct: 127 VEPTVTISLSRTEALNHHNLLVCSVTDFYPGQIKVRWFQNGKEETAGIVSTPLIRNGDWT 186
Query: 637 LHTLVMLLTVPTCG 678
LVML P G
Sbjct: 187 FQILVMLEMTPKRG 200
>ref|XP_582099.2| PREDICTED: similar to major histocompatibility complex, class II,
DR beta 5 precursor [Bos taurus]
Length = 255
Score = 130 bits (328), Expect = 9e-31
Identities = 76/186 (40%), Positives = 107/186 (57%)
Frame = +1
Query: 124 AAQTVMLVVLSRLMALGRDTPLNFLYLLKFQCRFLNGTQRAKLLERQHHGA*EYVRFNGD 303
AA V+L+VLS + R+T +F++ K +CRF NG +R + R + E V F+ D
Sbjct: 2 AALAVLLMVLSLPFSWARETQPHFIHQFKGECRFSNGLERMRFFARYIYNTQEDVHFDSD 61
Query: 304 MCEYQEVHELGPPVAHDRRCQNEVLDHKLVEVDT*CIQDSRTSVYFLVTRQVDPIVTVYR 483
+ E+ + ELG A Q + ++ +VDT C + + FL R+V+P VTVY
Sbjct: 62 VGEFTALTELGRLDAEYWNQQKDFMEQMRAKVDTLCRSNYQGIGSFLRQRRVEPTVTVYP 121
Query: 484 EKHPLLQRQNILVCSVTGFYTCSW*VRLFRNALQEDAGVVSTDLVPTGDWTLHTLVMLLT 663
K LQ N+LVCSV GFY VR F N+ +E+AGV+ST L+ GDWT T+VML T
Sbjct: 122 AKTQPLQHHNLLVCSVNGFYPGHIEVRWFWNSHEEEAGVISTGLIQNGDWTFQTMVMLET 181
Query: 664 VPTCGK 681
VP G+
Sbjct: 182 VPQSGE 187
>ref|NP_001013618.1| major histocompatibility complex, class II, DO beta [Bos taurus]
Length = 271
Score = 116 bits (290), Expect = 2e-26
Identities = 64/170 (37%), Positives = 91/170 (53%)
Frame = +1
Query: 172 GRDTPLNFLYLLKFQCRFLNGTQRAKLLERQHHGA*EYVRFNGDMCEYQEVHELGPPVAH 351
GRD+P +F+ K C F NGT++ + + R +Y RF+ D+ + + ELG P A
Sbjct: 26 GRDSPEDFVTQAKADCYFTNGTEKVRFVVRFIFNLEDYARFDSDLGMFVALTELGKPDAE 85
Query: 352 DRRCQNEVLDHKLVEVDT*CIQDSRTSVYFLVTRQVDPIVTVYREKHPLLQRQNILVCSV 531
+ ++L VD C ++ F V R+V P VTVY EK P LQ +N+L+C V
Sbjct: 86 RWNNRPDILARSRASVDMLCRRNYYLGAPFTVGRRVQPEVTVYPEKTPALQHRNLLLCLV 145
Query: 532 TGFYTCSW*VRLFRNALQEDAGVVSTDLVPTGDWTLHTLVMLLTVPTCGK 681
TGFY V FRN ++ G++ST L+ GDWT VML P G+
Sbjct: 146 TGFYPGDIKVTWFRNGQEQREGIMSTGLIRNGDWTFQMTVMLAMTPELGE 195
>ref|NP_001012697.1| major histocompatibility complex, class II, DY beta [Bos taurus]
Length = 259
Score = 115 bits (289), Expect = 3e-26
Identities = 68/168 (40%), Positives = 88/168 (52%)
Frame = +1
Query: 175 RDTPLNFLYLLKFQCRFLNGTQRAKLLERQHHGA*EYVRFNGDMCEYQEVHELGPPVAHD 354
RD P NF+Y K C F NGT+ +L+ RQ + E + F+ D+ E+ V ELG A
Sbjct: 31 RDAPKNFVYQFKGMCYFTNGTEHVRLVARQIYNKEEILHFDSDLGEFVAVTELGRVCAEI 90
Query: 355 RRCQNEVLDHKLVEVDT*CIQDSRTSVYFLVTRQVDPIVTVYREKHPLLQRQNILVCSVT 534
Q ++L VDT C + + + F V R+V+P VTV L N+LVCSVT
Sbjct: 91 WNTQKDLLAEFRAYVDTLCRHNYKETAGFTVQRRVEPTVTVSPASTEALNHHNLLVCSVT 150
Query: 535 GFYTCSW*VRLFRNALQEDAGVVSTDLVPTGDWTLHTLVMLLTVPTCG 678
FY V+ FRN ++ AGV T L GDWT VML TVP G
Sbjct: 151 DFYPRQVKVKWFRNQQEQTAGVGFTPLTQNGDWTYQIHVMLETVPQLG 198
>ref|XP_876139.1| PREDICTED: similar to H-2 class II histocompatibility antigen, I-E
beta chain precursor [Bos taurus]
Length = 269
Score = 108 bits (271), Expect = 4e-24
Identities = 64/158 (40%), Positives = 83/158 (52%)
Frame = +1
Query: 208 KFQCRFLNGTQRAKLLERQHHGA*EYVRFNGDMCEYQEVHELGPPVAHDRRCQNEVLDHK 387
K +C F NGTQ+ + L+R + E V+F+ + EY+ E+G P A + L
Sbjct: 5 KSECHFSNGTQQVRFLDRYIYNREEQVQFDSLVGEYRARTEMGRPAAERWNRWPQALQRA 64
Query: 388 LVEVDT*CIQDSRTSVYFLVTRQVDPIVTVYREKHPLLQRQNILVCSVTGFYTCSW*VRL 567
V C + V R+V P VTVY K L N+LVCSV GFY VR
Sbjct: 65 RAAVHAYCASNYEFFASRTVQRRVQPTVTVYPVKSRPLWHHNLLVCSVNGFYPGHIEVRW 124
Query: 568 FRNALQEDAGVVSTDLVPTGDWTLHTLVMLLTVPTCGK 681
FRN +E+AGVVST L+P GDWT +VML VP G+
Sbjct: 125 FRNGQEEEAGVVSTGLIPNGDWTFQIMVMLEIVPQGGE 162
>ref|XP_874766.1| PREDICTED: similar to HLA class II histocompatibility antigen,
DRB1-7 beta chain precursor (MHC class I antigen DRB1*7)
(DR-7) (DR7) [Bos taurus]
Length = 347
Score = 73.6 bits (179), Expect = 2e-13
Identities = 38/77 (49%), Positives = 49/77 (63%)
Frame = +1
Query: 451 RQVDPIVTVYREKHPLLQRQNILVCSVTGFYTCSW*VRLFRNALQEDAGVVSTDLVPTGD 630
++V+P VTVY K LQ ++LVCSV GFY VR F +E+AGV+ST L+ GD
Sbjct: 93 KKVEPTVTVYPAKTQPLQHNHLLVCSVNGFYLGHVEVRWFWKGQEEEAGVISTGLIQNGD 152
Query: 631 WTLHTLVMLLTVPTCGK 681
WT T+VML TV G+
Sbjct: 153 WTFETIVMLETVLQSGE 169
Database: RefSeqBP
Posted date: Aug 1, 2006 7:14 PM
Number of letters in database: 16,112,626
Number of sequences in database: 33,508
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 29,825,996
Number of Sequences: 33508
Number of extensions: 813715
Number of successful extensions: 2510
Number of sequences better than 1.0e-05: 8
Number of HSP's better than 0.0 without gapping: 2295
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2506
length of database: 16,112,626
effective HSP length: 100
effective length of database: 12,761,826
effective search space used: 2246081376
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
Search to RefSeqHP
BLASTX 2.2.10 [Oct-19-2004]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20060611S-041111
(832 letters)
Database: RefSeqHP
39,411 sequences; 17,774,539 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_002115.1| major histocompatibility complex, class II, DR ... 163 1e-40
Alignment gi|XP_945926.1| PREDICTED: similar to HLA class II histocompati... 161 7e-40
Alignment gi|XP_949921.1| PREDICTED: similar to HLA class II histocompati... 161 7e-40
Alignment gi|NP_072049.2| major histocompatibility complex, class II, DR ... 161 7e-40
Alignment gi|NP_068818.4| major histocompatibility complex, class II, DR ... 157 8e-39
Alignment gi|NP_002116.2| major histocompatibility complex, class II, DR ... 153 1e-37
Alignment gi|XP_949915.1| PREDICTED: similar to HLA class II histocompati... 144 7e-35
Alignment gi|NP_002114.2| major histocompatibility complex, class II, DQ ... 137 8e-33
Alignment gi|NP_872355.1| major histocompatibility complex, class II, DQ ... 136 2e-32
Alignment gi|NP_002111.1| major histocompatibility complex, class II, DO ... 124 1e-28
>ref|NP_002115.1| major histocompatibility complex, class II, DR beta 1 precursor
[Homo sapiens]
Length = 266
Score = 163 bits (413), Expect = 1e-40
Identities = 94/190 (49%), Positives = 116/190 (61%)
Frame = +1
Query: 112 GFWRAAQTVMLVVLSRLMALGRDTPLNFLYLLKFQCRFLNGTQRAKLLERQHHGA*EYVR 291
G A TV L+VLS +AL DT FL+ LKF+C F NGT+R +LLER + E VR
Sbjct: 9 GSCMTALTVTLMVLSSPLALAGDTRPRFLWQLKFECHFFNGTERVRLLERCIYNQEESVR 68
Query: 292 FNGDMCEYQEVHELGPPVAHDRRCQNEVLDHKLVEVDT*CIQDSRTSVYFLVTRQVDPIV 471
F+ D+ EY+ V ELG P A Q ++L+ + VDT C + F V R+V+P V
Sbjct: 69 FDSDVGEYRAVTELGRPDAEYWNSQKDLLEQRRAAVDTYCRHNYGVGESFTVQRRVEPKV 128
Query: 472 TVYREKHPLLQRQNILVCSVTGFYTCSW*VRLFRNALQEDAGVVSTDLVPTGDWTLHTLV 651
TVY K LQ N+LVCSV+GFY S VR FRN +E AGVVST L+ GDWT TLV
Sbjct: 129 TVYPSKTQPLQHHNLLVCSVSGFYPGSIEVRWFRNGQEEKAGVVSTGLIQNGDWTFQTLV 188
Query: 652 MLLTVPTCGK 681
ML TVP G+
Sbjct: 189 MLETVPRSGE 198
>ref|XP_945926.1| PREDICTED: similar to HLA class II histocompatibility antigen,
DRB1-9 beta chain precursor (MHC class I antigen DRB1*9)
(DR-9) (DR9) isoform 1 [Homo sapiens]
Length = 266
Score = 161 bits (407), Expect = 7e-40
Identities = 94/190 (49%), Positives = 113/190 (59%)
Frame = +1
Query: 112 GFWRAAQTVMLVVLSRLMALGRDTPLNFLYLLKFQCRFLNGTQRAKLLERQHHGA*EYVR 291
G AA TV L+VLS +AL DT FL KF+C F NGT+R + L R + E VR
Sbjct: 9 GSCMAALTVTLMVLSSPLALAGDTQPRFLKQDKFECHFFNGTERVRYLHRGIYNQEENVR 68
Query: 292 FNGDMCEYQEVHELGPPVAHDRRCQNEVLDHKLVEVDT*CIQDSRTSVYFLVTRQVDPIV 471
F+ D+ EY+ V ELG PVA Q + L+ + EVDT C + F V R+V P V
Sbjct: 69 FDSDVGEYRAVTELGRPVAESWNSQKDFLERRRAEVDTVCRHNYGVGESFTVQRRVHPEV 128
Query: 472 TVYREKHPLLQRQNILVCSVTGFYTCSW*VRLFRNALQEDAGVVSTDLVPTGDWTLHTLV 651
TVY K LQ N+LVCSV+GFY S VR FRN +E AGVVST L+ GDWT TLV
Sbjct: 129 TVYPAKTQPLQHHNLLVCSVSGFYPGSIEVRWFRNGQEEKAGVVSTGLIQNGDWTFQTLV 188
Query: 652 MLLTVPTCGK 681
ML TVP G+
Sbjct: 189 MLETVPRSGE 198
>ref|XP_949921.1| PREDICTED: similar to HLA class II histocompatibility antigen,
DRB1-9 beta chain precursor (MHC class I antigen DRB1*9)
(DR-9) (DR9) isoform 3 [Homo sapiens]
Length = 325
Score = 161 bits (407), Expect = 7e-40
Identities = 94/190 (49%), Positives = 113/190 (59%)
Frame = +1
Query: 112 GFWRAAQTVMLVVLSRLMALGRDTPLNFLYLLKFQCRFLNGTQRAKLLERQHHGA*EYVR 291
G AA TV L+VLS +AL DT FL KF+C F NGT+R + L R + E VR
Sbjct: 9 GSCMAALTVTLMVLSSPLALAGDTQPRFLKQDKFECHFFNGTERVRYLHRGIYNQEENVR 68
Query: 292 FNGDMCEYQEVHELGPPVAHDRRCQNEVLDHKLVEVDT*CIQDSRTSVYFLVTRQVDPIV 471
F+ D+ EY+ V ELG PVA Q + L+ + EVDT C + F V R+V P V
Sbjct: 69 FDSDVGEYRAVTELGRPVAESWNSQKDFLERRRAEVDTVCRHNYGVGESFTVQRRVHPEV 128
Query: 472 TVYREKHPLLQRQNILVCSVTGFYTCSW*VRLFRNALQEDAGVVSTDLVPTGDWTLHTLV 651
TVY K LQ N+LVCSV+GFY S VR FRN +E AGVVST L+ GDWT TLV
Sbjct: 129 TVYPAKTQPLQHHNLLVCSVSGFYPGSIEVRWFRNGQEEKAGVVSTGLIQNGDWTFQTLV 188
Query: 652 MLLTVPTCGK 681
ML TVP G+
Sbjct: 189 MLETVPRSGE 198
>ref|NP_072049.2| major histocompatibility complex, class II, DR beta 3 precursor
[Homo sapiens]
Length = 266
Score = 161 bits (407), Expect = 7e-40
Identities = 91/186 (48%), Positives = 112/186 (60%)
Frame = +1
Query: 124 AAQTVMLVVLSRLMALGRDTPLNFLYLLKFQCRFLNGTQRAKLLERQHHGA*EYVRFNGD 303
AA TV L+VLS +A DT FL L K +C F NGT+R + L+R H E++RF+ D
Sbjct: 13 AALTVTLMVLSSRLAFAGDTRPRFLELRKSECHFFNGTERVRYLDRYFHNQEEFLRFDSD 72
Query: 304 MCEYQEVHELGPPVAHDRRCQNEVLDHKLVEVDT*CIQDSRTSVYFLVTRQVDPIVTVYR 483
+ EY+ V ELG PVA Q ++L+ K VD C + F V R+V P VTVY
Sbjct: 73 VGEYRAVTELGRPVAESWNSQKDLLEQKRGRVDNYCRHNYGVGESFTVQRRVHPQVTVYP 132
Query: 484 EKHPLLQRQNILVCSVTGFYTCSW*VRLFRNALQEDAGVVSTDLVPTGDWTLHTLVMLLT 663
K LQ N+LVCSV+GFY S VR FRN +E AGVVST L+ GDWT TLVML T
Sbjct: 133 AKTQPLQHHNLLVCSVSGFYPGSIEVRWFRNGQEEKAGVVSTGLIQNGDWTFQTLVMLET 192
Query: 664 VPTCGK 681
VP G+
Sbjct: 193 VPRSGE 198
>ref|NP_068818.4| major histocompatibility complex, class II, DR beta 4 precursor
[Homo sapiens]
Length = 266
Score = 157 bits (398), Expect = 8e-39
Identities = 94/190 (49%), Positives = 110/190 (57%)
Frame = +1
Query: 112 GFWRAAQTVMLVVLSRLMALGRDTPLNFLYLLKFQCRFLNGTQRAKLLERQHHGA*EYVR 291
G AA TV L VLS +AL DT FL K +C FLNGT+R L R + EY R
Sbjct: 9 GSCMAALTVTLTVLSSPLALAGDTQPRFLEQAKCECHFLNGTERVWNLIRYIYNQEEYAR 68
Query: 292 FNGDMCEYQEVHELGPPVAHDRRCQNEVLDHKLVEVDT*CIQDSRTSVYFLVTRQVDPIV 471
+N D+ EYQ V ELG P A Q ++L+ + EVDT C + F V R+V P V
Sbjct: 69 YNSDLGEYQAVTELGRPDAEYWNSQKDLLERRRAEVDTYCRYNYGVVESFTVQRRVQPKV 128
Query: 472 TVYREKHPLLQRQNILVCSVTGFYTCSW*VRLFRNALQEDAGVVSTDLVPTGDWTLHTLV 651
TVY K LQ N+LVCSV GFY S VR FRN +E AGVVST L+ GDWT TLV
Sbjct: 129 TVYPSKTQPLQHHNLLVCSVNGFYPGSIEVRWFRNGQEEKAGVVSTGLIQNGDWTFQTLV 188
Query: 652 MLLTVPTCGK 681
ML TVP G+
Sbjct: 189 MLETVPRSGE 198
>ref|NP_002116.2| major histocompatibility complex, class II, DR beta 5 precursor
[Homo sapiens]
Length = 266
Score = 153 bits (387), Expect = 1e-37
Identities = 88/190 (46%), Positives = 112/190 (58%)
Frame = +1
Query: 112 GFWRAAQTVMLVVLSRLMALGRDTPLNFLYLLKFQCRFLNGTQRAKLLERQHHGA*EYVR 291
G + A TV L+VLS +AL DT FL K++C F NGT+R + L R + E +R
Sbjct: 9 GSYMAKLTVTLMVLSSPLALAGDTRPRFLQQDKYECHFFNGTERVRFLHRDIYNQEEDLR 68
Query: 292 FNGDMCEYQEVHELGPPVAHDRRCQNEVLDHKLVEVDT*CIQDSRTSVYFLVTRQVDPIV 471
F+ D+ EY+ V ELG P A Q + L+ + VDT C + F V R+V+P V
Sbjct: 69 FDSDVGEYRAVTELGRPDAEYWNSQKDFLEDRRAAVDTYCRHNYGVGESFTVQRRVEPKV 128
Query: 472 TVYREKHPLLQRQNILVCSVTGFYTCSW*VRLFRNALQEDAGVVSTDLVPTGDWTLHTLV 651
TVY + LQ N+LVCSV GFY S VR FRN+ +E AGVVST L+ GDWT TLV
Sbjct: 129 TVYPARTQTLQHHNLLVCSVNGFYPGSIEVRWFRNSQEEKAGVVSTGLIQNGDWTFQTLV 188
Query: 652 MLLTVPTCGK 681
ML TVP G+
Sbjct: 189 MLETVPRSGE 198
>ref|XP_949915.1| PREDICTED: similar to HLA class II histocompatibility antigen,
DRB1-9 beta chain precursor (MHC class I antigen DRB1*9)
(DR-9) (DR9) isoform 2 [Homo sapiens]
Length = 284
Score = 144 bits (364), Expect = 7e-35
Identities = 81/163 (49%), Positives = 98/163 (60%)
Frame = +1
Query: 193 FLYLLKFQCRFLNGTQRAKLLERQHHGA*EYVRFNGDMCEYQEVHELGPPVAHDRRCQNE 372
FL KF+C F NGT+R + L R + E VRF+ D+ EY+ V ELG PVA Q +
Sbjct: 54 FLKQDKFECHFFNGTERVRYLHRGIYNQEENVRFDSDVGEYRAVTELGRPVAESWNSQKD 113
Query: 373 VLDHKLVEVDT*CIQDSRTSVYFLVTRQVDPIVTVYREKHPLLQRQNILVCSVTGFYTCS 552
L+ + EVDT C + F V R+V P VTVY K LQ N+LVCSV+GFY S
Sbjct: 114 FLERRRAEVDTVCRHNYGVGESFTVQRRVHPEVTVYPAKTQPLQHHNLLVCSVSGFYPGS 173
Query: 553 W*VRLFRNALQEDAGVVSTDLVPTGDWTLHTLVMLLTVPTCGK 681
VR FRN +E AGVVST L+ GDWT TLVML TVP G+
Sbjct: 174 IEVRWFRNGQEEKAGVVSTGLIQNGDWTFQTLVMLETVPRSGE 216
>ref|NP_002114.2| major histocompatibility complex, class II, DQ beta 1 precursor
[Homo sapiens]
Length = 261
Score = 137 bits (346), Expect = 8e-33
Identities = 79/194 (40%), Positives = 108/194 (55%)
Frame = +1
Query: 97 LCVSRGFWRAAQTVMLVVLSRLMALGRDTPLNFLYLLKFQCRFLNGTQRAKLLERQHHGA 276
L + G A T+ML +LS +A GRD+P +F+Y K C F NGT+R +L+ R +
Sbjct: 7 LRIPGGLRAATVTLMLSMLSTPVAEGRDSPEDFVYQFKGMCYFTNGTERVRLVSRSIYNR 66
Query: 277 *EYVRFNGDMCEYQEVHELGPPVAHDRRCQNEVLDHKLVEVDT*CIQDSRTSVYFLVTRQ 456
E VRF+ D+ E++ V LG P A Q ++L+ K VD C + + + + R+
Sbjct: 67 EEIVRFDSDVGEFRAVTLLGLPAAEYWNSQKDILERKRAAVDRVCRHNYQLELRTTLQRR 126
Query: 457 VDPIVTVYREKHPLLQRQNILVCSVTGFYTCSW*VRLFRNALQEDAGVVSTDLVPTGDWT 636
V+P VT+ + L N+LVCSVT FY VR FRN +E AGVVST L+ GDWT
Sbjct: 127 VEPTVTISPSRTEALNHHNLLVCSVTDFYPAQIKVRWFRNDQEETAGVVSTPLIRNGDWT 186
Query: 637 LHTLVMLLTVPTCG 678
LVML P G
Sbjct: 187 FQILVMLEMTPQRG 200
>ref|NP_872355.1| major histocompatibility complex, class II, DQ beta 2 [Homo
sapiens]
Length = 231
Score = 136 bits (343), Expect = 2e-32
Identities = 81/194 (41%), Positives = 106/194 (54%)
Frame = +1
Query: 97 LCVSRGFWRAAQTVMLVVLSRLMALGRDTPLNFLYLLKFQCRFLNGTQRAKLLERQHHGA 276
L + GFW AA TVMLV+LS +A RD P +FL K C F NGT+R + + R +
Sbjct: 7 LQIPGGFWAAAVTVMLVMLSTPVAEARDFPKDFLVQFKGMCYFTNGTERVRGVARYIYNR 66
Query: 277 *EYVRFNGDMCEYQEVHELGPPVAHDRRCQNEVLDHKLVEVDT*CIQDSRTSVYFLVTRQ 456
EY RF+ D+ E+Q V ELG + D + L+ + VD C + + + RQ
Sbjct: 67 EEYGRFDSDVGEFQAVTELGRSI-EDWNNYKDFLEQERAAVDKVCRHNYEAELRTTLQRQ 125
Query: 457 VDPIVTVYREKHPLLQRQNILVCSVTGFYTCSW*VRLFRNALQEDAGVVSTDLVPTGDWT 636
V+P VT+ + L N+LVCSVT FY V+ FRN +E AGVVST L+ GDWT
Sbjct: 126 VEPTVTISPSRTEALNHHNLLVCSVTDFYPAQIKVQWFRNDQEETAGVVSTSLIRNGDWT 185
Query: 637 LHTLVMLLTVPTCG 678
LVML P G
Sbjct: 186 FQILVMLEITPQRG 199
>ref|NP_002111.1| major histocompatibility complex, class II, DO beta precursor [Homo
sapiens]
Length = 273
Score = 124 bits (310), Expect = 1e-28
Identities = 72/187 (38%), Positives = 99/187 (52%)
Frame = +1
Query: 118 WRAAQTVMLVVLSRLMALGRDTPLNFLYLLKFQCRFLNGTQRAKLLERQHHGA*EYVRFN 297
W A V L L M G D+P +F+ K C F NGT++ + + R EYVRF+
Sbjct: 8 WVVALLVNLTRLDSSMTQGTDSPEDFVIQAKADCYFTNGTEKVQFVVRFIFNLEEYVRFD 67
Query: 298 GDMCEYQEVHELGPPVAHDRRCQNEVLDHKLVEVDT*CIQDSRTSVYFLVTRQVDPIVTV 477
D+ + + +LG P A + ++L+ VD C + R F V R+V P VTV
Sbjct: 68 SDVGMFVALTKLGQPDAEQWNSRLDLLERSRQAVDGVCRHNYRLGAPFTVGRKVQPEVTV 127
Query: 478 YREKHPLLQRQNILVCSVTGFYTCSW*VRLFRNALQEDAGVVSTDLVPTGDWTLHTLVML 657
Y E+ PLL + N+L CSVTGFY ++ F N +E AGV+ST + GDWT T+VML
Sbjct: 128 YPERTPLLHQHNLLHCSVTGFYPGDIKIKWFLNGQEERAGVMSTGPIRNGDWTFQTVVML 187
Query: 658 LTVPTCG 678
P G
Sbjct: 188 EMTPELG 194
Database: RefSeqHP
Posted date: Aug 2, 2006 12:57 AM
Number of letters in database: 17,774,539
Number of sequences in database: 39,411
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 33,886,704
Number of Sequences: 39411
Number of extensions: 953907
Number of successful extensions: 3529
Number of sequences better than 1.0e-05: 10
Number of HSP's better than 0.0 without gapping: 2875
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3522
length of database: 17,774,539
effective HSP length: 101
effective length of database: 13,794,028
effective search space used: 2413954900
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
Search to RefSeqCP
BLASTX 2.2.10 [Oct-19-2004]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20060611S-041111
(832 letters)
Database: RefSeqCP
33,732 sequences; 19,266,565 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001014768.1| MHC class II DLA DRB1 beta chain [Canis fami... 161 6e-40
Alignment gi|NP_001014403.1| MHC class II DLA-DQ beta chain b1 domain [Ca... 154 1e-37
Alignment gi|XP_861384.1| PREDICTED: similar to HLA class II histocompati... 127 1e-29
Alignment gi|XP_850395.1| PREDICTED: similar to HLA class II histocompati... 127 1e-29
>ref|NP_001014768.1| MHC class II DLA DRB1 beta chain [Canis familiaris]
Length = 266
Score = 161 bits (408), Expect = 6e-40
Identities = 89/195 (45%), Positives = 115/195 (58%)
Frame = +1
Query: 97 LCVSRGFWRAAQTVMLVVLSRLMALGRDTPLNFLYLLKFQCRFLNGTQRAKLLERQHHGA 276
LC G W A ++L+VL+ A RDTP +FL + K +C F NGT+R + +ER H
Sbjct: 4 LCFLGGSWMTALMLILMVLNPPFAWARDTPPHFLEVAKSECYFTNGTERVRFVERYIHNR 63
Query: 277 *EYVRFNGDMCEYQEVHELGPPVAHDRRCQNEVLDHKLVEVDT*CIQDSRTSVYFLVTRQ 456
E+VRF+ D+ E++ V ELG PVA Q E+L+ + VDT C + F V R+
Sbjct: 64 EEFVRFDSDVGEFRAVTELGRPVAESWNGQKEILEQERATVDTYCRHNYGVIESFTVQRR 123
Query: 457 VDPIVTVYREKHPLLQRQNILVCSVTGFYTCSW*VRLFRNALQEDAGVVSTDLVPTGDWT 636
V+P VTVY K LQ N+LVCSV GFY VR RN +E+AGVVST L+ GDWT
Sbjct: 124 VEPTVTVYPTKTQTLQHHNLLVCSVNGFYPGHIEVRWLRNGQEEEAGVVSTGLIRNGDWT 183
Query: 637 LHTLVMLLTVPTCGK 681
LVML VP G+
Sbjct: 184 FQILVMLEIVPQSGE 198
>ref|NP_001014403.1| MHC class II DLA-DQ beta chain b1 domain [Canis familiaris]
Length = 269
Score = 154 bits (389), Expect = 1e-37
Identities = 84/194 (43%), Positives = 116/194 (59%)
Frame = +1
Query: 97 LCVSRGFWRAAQTVMLVVLSRLMALGRDTPLNFLYLLKFQCRFLNGTQRAKLLERQHHGA 276
LC+ RGFW AA ++LVVLS +A GRD+P +F++ K +C F NGT+R +LL + +
Sbjct: 7 LCIPRGFWTAAVMMILVVLSIPVAEGRDSPQDFVFQYKAECYFTNGTERVRLLTKYIYNR 66
Query: 277 *EYVRFNGDMCEYQEVHELGPPVAHDRRCQNEVLDHKLVEVDT*CIQDSRTSVYFLVTRQ 456
E+VRF+ D+ E++ V ELG P A Q + +D E+DT C + + R+
Sbjct: 67 EEFVRFDSDVGEFRAVTELGRPDAEYWNRQKDEMDRVRAELDTVCRHNYGREELTTLQRR 126
Query: 457 VDPIVTVYREKHPLLQRQNILVCSVTGFYTCSW*VRLFRNALQEDAGVVSTDLVPTGDWT 636
V+P VT++ K +L N+LVCSVT FY VR FRN ++ AGVVST L+ GDWT
Sbjct: 127 VEPTVTIFPSKTEVLNHHNLLVCSVTDFYPGQIKVRWFRNDQEQTAGVVSTPLIRNGDWT 186
Query: 637 LHTLVMLLTVPTCG 678
LVML P G
Sbjct: 187 FQILVMLEMTPQRG 200
>ref|XP_861384.1| PREDICTED: similar to HLA class II histocompatibility antigen, DO
beta chain precursor (MHC class II antigen DOB) isoform
2 [Canis familiaris]
Length = 228
Score = 127 bits (319), Expect = 1e-29
Identities = 71/187 (37%), Positives = 98/187 (52%)
Frame = +1
Query: 118 WRAAQTVMLVVLSRLMALGRDTPLNFLYLLKFQCRFLNGTQRAKLLERQHHGA*EYVRFN 297
W A V + L M GRD+P +F+ K C F+NGT++ + + R EY RF+
Sbjct: 8 WMLALLVNVTGLDSSMTQGRDSPEDFVIQAKADCYFINGTEKVQFVVRFIFNLEEYARFD 67
Query: 298 GDMCEYQEVHELGPPVAHDRRCQNEVLDHKLVEVDT*CIQDSRTSVYFLVTRQVDPIVTV 477
+ + + ELG P A Q +L+ VD C + F V R+V P VTV
Sbjct: 68 SHVGMFVALTELGKPDAELWNSQPGILERSRASVDLLCRHNYELGAPFTVGRKVQPEVTV 127
Query: 478 YREKHPLLQRQNILVCSVTGFYTCSW*VRLFRNALQEDAGVVSTDLVPTGDWTLHTLVML 657
Y E+ P +Q N+L+CSVTGFY ++ FRN +E GV+ST L+ GDWT T+VML
Sbjct: 128 YPERTPSMQHHNLLLCSVTGFYPGDIKIKWFRNGQEERVGVMSTGLIRNGDWTFQTMVML 187
Query: 658 LTVPTCG 678
P G
Sbjct: 188 EMTPELG 194
>ref|XP_850395.1| PREDICTED: similar to HLA class II histocompatibility antigen, DO
beta chain precursor (MHC class II antigen DOB) isoform
1 [Canis familiaris]
Length = 270
Score = 127 bits (319), Expect = 1e-29
Identities = 71/187 (37%), Positives = 98/187 (52%)
Frame = +1
Query: 118 WRAAQTVMLVVLSRLMALGRDTPLNFLYLLKFQCRFLNGTQRAKLLERQHHGA*EYVRFN 297
W A V + L M GRD+P +F+ K C F+NGT++ + + R EY RF+
Sbjct: 8 WMLALLVNVTGLDSSMTQGRDSPEDFVIQAKADCYFINGTEKVQFVVRFIFNLEEYARFD 67
Query: 298 GDMCEYQEVHELGPPVAHDRRCQNEVLDHKLVEVDT*CIQDSRTSVYFLVTRQVDPIVTV 477
+ + + ELG P A Q +L+ VD C + F V R+V P VTV
Sbjct: 68 SHVGMFVALTELGKPDAELWNSQPGILERSRASVDLLCRHNYELGAPFTVGRKVQPEVTV 127
Query: 478 YREKHPLLQRQNILVCSVTGFYTCSW*VRLFRNALQEDAGVVSTDLVPTGDWTLHTLVML 657
Y E+ P +Q N+L+CSVTGFY ++ FRN +E GV+ST L+ GDWT T+VML
Sbjct: 128 YPERTPSMQHHNLLLCSVTGFYPGDIKIKWFRNGQEERVGVMSTGLIRNGDWTFQTMVML 187
Query: 658 LTVPTCG 678
P G
Sbjct: 188 EMTPELG 194
Database: RefSeqCP
Posted date: Aug 1, 2006 9:25 PM
Number of letters in database: 19,266,565
Number of sequences in database: 33,732
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 34,963,326
Number of Sequences: 33732
Number of extensions: 951627
Number of successful extensions: 2904
Number of sequences better than 1.0e-05: 4
Number of HSP's better than 0.0 without gapping: 2648
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2901
length of database: 19,266,565
effective HSP length: 101
effective length of database: 15,859,633
effective search space used: 2775435775
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
Search to RefSeqMP
BLASTX 2.2.10 [Oct-19-2004]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20060611S-041111
(832 letters)
Database: RefSeqMP
45,328 sequences; 21,768,885 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_034512.1| histocompatibility 2, class II antigen E beta [... 150 2e-36
Alignment gi|NP_034519.2| histocompatibility 2, O region beta locus [Mus ... 135 5e-32
Alignment gi|NP_001029150.1| H-2 class II histocompatibility antigen E-a/... 118 6e-27
Alignment gi|NP_996988.1| histocompatibility 2, class II antigen A, beta ... 116 3e-26
>ref|NP_034512.1| histocompatibility 2, class II antigen E beta [Mus musculus]
Length = 264
Score = 150 bits (378), Expect = 2e-36
Identities = 87/186 (46%), Positives = 112/186 (60%)
Frame = +1
Query: 124 AAQTVMLVVLSRLMALGRDTPLNFLYLLKFQCRFLNGTQRAKLLERQHHGA*EYVRFNGD 303
AA ++L VLS +AL RD+ FL K +C F NGTQR + L+R + E +RF+ D
Sbjct: 11 AAVILLLTVLSPPVALVRDSRPWFLEYCKSECHFYNGTQRVRFLKRYFYNLEENLRFDSD 70
Query: 304 MCEYQEVHELGPPVAHDRRCQNEVLDHKLVEVDT*CIQDSRTSVYFLVTRQVDPIVTVYR 483
+ E++ V ELG P A + Q E+LD K VDT C + FLV R+V+P VTVY
Sbjct: 71 VGEFRAVTELGRPDAENWNSQPEILDEKRAAVDTYCRHNYEIFDNFLVPRRVEPTVTVYP 130
Query: 484 EKHPLLQRQNILVCSVTGFYTCSW*VRLFRNALQEDAGVVSTDLVPTGDWTLHTLVMLLT 663
K L+ N+LVCSV+ FY + VR FRN +E G+VST LV GDWT TLVML T
Sbjct: 131 TKTQPLEHHNLLVCSVSDFYPGNIEVRWFRNGKEEKTGIVSTGLVRNGDWTFQTLVMLET 190
Query: 664 VPTCGK 681
VP G+
Sbjct: 191 VPQSGE 196
>ref|NP_034519.2| histocompatibility 2, O region beta locus [Mus musculus]
Length = 271
Score = 135 bits (340), Expect = 5e-32
Identities = 79/190 (41%), Positives = 104/190 (54%)
Frame = +1
Query: 109 RGFWRAAQTVMLVVLSRLMALGRDTPLNFLYLLKFQCRFLNGTQRAKLLERQHHGA*EYV 288
R W A V L+ L M GRD+P NF+ K C F NGT++ LL R EY+
Sbjct: 5 RAPWVVALLVNLMRLDSFMIEGRDSPENFVIQAKADCYFTNGTEKVHLLVRFIFNLEEYL 64
Query: 289 RFNGDMCEYQEVHELGPPVAHDRRCQNEVLDHKLVEVDT*CIQDSRTSVYFLVTRQVDPI 468
F+ D+ + + ELG P A + ++L+ V+ C Q + F V R V P
Sbjct: 65 HFDSDLGMFVALTELGEPDADQWNKRLDLLETSRAAVNMVCRQKYKLGAPFTVERNVPPE 124
Query: 469 VTVYREKHPLLQRQNILVCSVTGFYTCSW*VRLFRNALQEDAGVVSTDLVPTGDWTLHTL 648
VTVY E+ PLLQ+ N+L+CSVTGFY V+ FRN +E +GV+ST LV GDWT T
Sbjct: 125 VTVYPERTPLLQQHNLLLCSVTGFYPGDISVKWFRNGQEERSGVMSTGLVRNGDWTFQTT 184
Query: 649 VMLLTVPTCG 678
VML +P G
Sbjct: 185 VMLEMIPELG 194
>ref|NP_001029150.1| H-2 class II histocompatibility antigen E-a/k beta-2 [Mus musculus]
Length = 287
Score = 118 bits (296), Expect = 6e-27
Identities = 75/195 (38%), Positives = 103/195 (52%)
Frame = +1
Query: 97 LCVSRGFWRAAQTVMLVVLSRLMALGRDTPLNFLYLLKFQCRFLNGTQRAKLLERQHHGA 276
L + RG AA + L++L+ + L RD FL LK +C + NG +R + R +
Sbjct: 4 LWLPRGLCVAAVILSLMMLTPPVILVRDPRPRFLEQLKAECHYFNGKERVWSVTRFIYNQ 63
Query: 277 *EYVRFNGDMCEYQEVHELGPPVAHDRRCQNEVLDHKLVEVDT*CIQDSRTSVYFLVTRQ 456
E+ RFN D ++ V ELG P+ Q ++LD+ VD C + F++ +
Sbjct: 64 EEFARFNSDFGKFLAVTELGRPIVEYLNTQKDMLDNYRASVDR-CRNNYDLVDIFMLNLK 122
Query: 457 VDPIVTVYREKHPLLQRQNILVCSVTGFYTCSW*VRLFRNALQEDAGVVSTDLVPTGDWT 636
+P VTVY K L+ N+LVCSV FY S VR FRN +E GVVST L+ DWT
Sbjct: 123 AEPKVTVYPAKTQPLEHHNLLVCSVIDFYPGSIEVRWFRNGEEEKTGVVSTGLIQNRDWT 182
Query: 637 LHTLVMLLTVPTCGK 681
TLVML VP G+
Sbjct: 183 YQTLVMLEMVPRGGE 197
>ref|NP_996988.1| histocompatibility 2, class II antigen A, beta 1 [Mus musculus]
Length = 265
Score = 116 bits (290), Expect = 3e-26
Identities = 71/187 (37%), Positives = 97/187 (51%), Gaps = 1/187 (0%)
Frame = +1
Query: 124 AAQTVMLVVLSRLMALGRDTPLNFLYLLKFQCRFLNGTQRAKLLERQHHGA*EYVRFNGD 303
+A V+L+VLS G D+ +F+Y +C F NGTQR + + R + EYVR++ D
Sbjct: 11 SAAVVVLMVLSSPGTEGGDSERHFVYQFMGECYFTNGTQRIRYVTRYIYNREEYVRYDSD 70
Query: 304 MCEYQEVHELGPPVAHDRRCQNEVLDHKLVEVDT*CIQD-SRTSVYFLVTRQVDPIVTVY 480
+ E++ V ELG P A Q E+L+ E+DT C + + + R P V +
Sbjct: 71 VGEHRAVTELGRPDAEYWNSQPEILERTRAELDTVCRHNYEGPETHTSLRRLEQPNVVIS 130
Query: 481 REKHPLLQRQNILVCSVTGFYTCSW*VRLFRNALQEDAGVVSTDLVPTGDWTLHTLVMLL 660
+ L N LVCSVT FY VR FRN +E GV ST L+ GDWT LVML
Sbjct: 131 LSRTEALNHHNTLVCSVTDFYPTQIKVRWFRNGQEETVGVSSTQLIRNGDWTFQVLVMLE 190
Query: 661 TVPTCGK 681
P G+
Sbjct: 191 MTPRRGE 197
Database: RefSeqMP
Posted date: Aug 2, 2006 12:58 AM
Number of letters in database: 21,768,885
Number of sequences in database: 45,328
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 40,139,141
Number of Sequences: 45328
Number of extensions: 1093755
Number of successful extensions: 3371
Number of sequences better than 1.0e-05: 4
Number of HSP's better than 0.0 without gapping: 2998
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3365
length of database: 21,768,885
effective HSP length: 102
effective length of database: 17,145,429
effective search space used: 2983304646
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)