BLASTX 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= 20060611S-041111 (832 letters) Database: RefSeqSP 1040 sequences; 434,620 total letters Searching...done ***** No hits found ****** Database: RefSeqSP Posted date: Aug 1, 2006 7:14 PM Number of letters in database: 434,620 Number of sequences in database: 1040 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 796,819 Number of Sequences: 1040 Number of extensions: 20767 Number of successful extensions: 56 Number of sequences better than 1.0e-05: 0 Number of HSP's better than 0.0 without gapping: 55 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 56 length of database: 434,620 effective HSP length: 75 effective length of database: 356,620 effective search space used: 71680620 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
Search to RefSeqBP
BLASTX 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= 20060611S-041111 (832 letters) Database: RefSeqBP 33,508 sequences; 16,112,626 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Alignment gi|NP_001012698.2| major histocompatibility complex, class II, ... 157 9e-39 Alignment gi|NP_001029840.2| MHC class II antigen [Bos taurus] 136 2e-32 Alignment gi|NP_001012694.1| major histocompatibility complex, class II, ... 132 4e-31 Alignment gi|XP_582099.2| PREDICTED: similar to major histocompatibility ... 130 9e-31 Alignment gi|NP_001013618.1| major histocompatibility complex, class II, ... 116 2e-26 Alignment gi|NP_001012697.1| major histocompatibility complex, class II, ... 115 3e-26 Alignment gi|XP_876139.1| PREDICTED: similar to H-2 class II histocompati... 108 4e-24 Alignment gi|XP_874766.1| PREDICTED: similar to HLA class II histocompati... 74 2e-13 >ref|NP_001012698.2| major histocompatibility complex, class II, DRB3 [Bos taurus] Length = 266 Score = 157 bits (397), Expect = 9e-39 Identities = 88/195 (45%), Positives = 113/195 (57%) Frame = +1 Query: 97 LCVSRGFWRAAQTVMLVVLSRLMALGRDTPLNFLYLLKFQCRFLNGTQRAKLLERQHHGA 276 L S G W AA VML+VL +A R+ +FL K +C F NGT+R + L+R + Sbjct: 4 LYFSGGSWMAALIVMLMVLCPPLAWAREIQPHFLEYYKGECHFFNGTERVRFLDRHFYNG 63 Query: 277 *EYVRFNGDMCEYQEVHELGPPVAHDRRCQNEVLDHKLVEVDT*CIQDSRTSVYFLVTRQ 456 E+VRF+ D E++ V ELG P A Q + L+ K EVD C + F V R+ Sbjct: 64 EEFVRFDSDWGEFRAVTELGRPAAEHWNSQKDFLEQKRAEVDRVCRHNYGGVESFTVQRR 123 Query: 457 VDPIVTVYREKHPLLQRQNILVCSVTGFYTCSW*VRLFRNALQEDAGVVSTDLVPTGDWT 636 V+P VTVY K LQ N+LVCSV GFY VR FRN +E+AGV+ST L+ GDWT Sbjct: 124 VEPTVTVYPAKTQPLQHHNLLVCSVNGFYPGHIEVRWFRNGHEEEAGVISTGLIQNGDWT 183 Query: 637 LHTLVMLLTVPTCGK 681 T+VML TVP G+ Sbjct: 184 FQTMVMLETVPQSGE 198 >ref|NP_001029840.2| MHC class II antigen [Bos taurus] Length = 261 Score = 136 bits (342), Expect = 2e-32 Identities = 79/194 (40%), Positives = 104/194 (53%) Frame = +1 Query: 97 LCVSRGFWRAAQTVMLVVLSRLMALGRDTPLNFLYLLKFQCRFLNGTQRAKLLERQHHGA 276 L + RG W A V LV+LS A GRD+P +F+ K C F NGT+R + + R + Sbjct: 7 LWIPRGLWTAVVMVTLVMLSTPGAEGRDSPKDFVVQFKGLCYFTNGTERVRYVTRYIYNQ 66 Query: 277 *EYVRFNGDMCEYQEVHELGPPVAHDRRCQNEVLDHKLVEVDT*CIQDSRTSVYFLVTRQ 456 EYVRF+ D Y+ + LG P A Q + L+ E DT C + + + + R+ Sbjct: 67 EEYVRFDSDWDLYRALTPLGRPDAEYWNSQKDFLEQTRAEADTVCRHNYQAELITSLQRR 126 Query: 457 VDPIVTVYREKHPLLQRQNILVCSVTGFYTCSW*VRLFRNALQEDAGVVSTDLVPTGDWT 636 V+P VT+ + L N+LVCSVT FY VR FRN +E AGVVST L+ GDWT Sbjct: 127 VEPTVTISPSRTEALNHHNLLVCSVTDFYPSQIKVRWFRNDREETAGVVSTPLIRNGDWT 186 Query: 637 LHTLVMLLTVPTCG 678 LVML P G Sbjct: 187 FQILVMLEMTPQRG 200 >ref|NP_001012694.1| major histocompatibility complex, class II, DQ beta [Bos taurus] Length = 261 Score = 132 bits (331), Expect = 4e-31 Identities = 76/194 (39%), Positives = 105/194 (54%) Frame = +1 Query: 97 LCVSRGFWRAAQTVMLVVLSRLMALGRDTPLNFLYLLKFQCRFLNGTQRAKLLERQHHGA 276 L + RG W AA V L VLS A GRD+P + + QC F NGT+R + + R + Sbjct: 7 LRIPRGLWTAAVMVTLAVLSTPGAEGRDSPQDTVVHFMGQCYFTNGTERVRYVTRYIYNQ 66 Query: 277 *EYVRFNGDMCEYQEVHELGPPVAHDRRCQNEVLDHKLVEVDT*CIQDSRTSVYFLVTRQ 456 E ++ D+ EY+ V +LG +A Q ++L+ E+DT C + + V + RQ Sbjct: 67 EETAYYDSDVGEYRAVTQLGRTLAEYWNSQKDILEQTRAELDTVCRHNYQLEVITSLQRQ 126 Query: 457 VDPIVTVYREKHPLLQRQNILVCSVTGFYTCSW*VRLFRNALQEDAGVVSTDLVPTGDWT 636 V+P VT+ + L N+LVCSVT FY VR F+N +E AG+VST L+ GDWT Sbjct: 127 VEPTVTISLSRTEALNHHNLLVCSVTDFYPGQIKVRWFQNGKEETAGIVSTPLIRNGDWT 186 Query: 637 LHTLVMLLTVPTCG 678 LVML P G Sbjct: 187 FQILVMLEMTPKRG 200 >ref|XP_582099.2| PREDICTED: similar to major histocompatibility complex, class II, DR beta 5 precursor [Bos taurus] Length = 255 Score = 130 bits (328), Expect = 9e-31 Identities = 76/186 (40%), Positives = 107/186 (57%) Frame = +1 Query: 124 AAQTVMLVVLSRLMALGRDTPLNFLYLLKFQCRFLNGTQRAKLLERQHHGA*EYVRFNGD 303 AA V+L+VLS + R+T +F++ K +CRF NG +R + R + E V F+ D Sbjct: 2 AALAVLLMVLSLPFSWARETQPHFIHQFKGECRFSNGLERMRFFARYIYNTQEDVHFDSD 61 Query: 304 MCEYQEVHELGPPVAHDRRCQNEVLDHKLVEVDT*CIQDSRTSVYFLVTRQVDPIVTVYR 483 + E+ + ELG A Q + ++ +VDT C + + FL R+V+P VTVY Sbjct: 62 VGEFTALTELGRLDAEYWNQQKDFMEQMRAKVDTLCRSNYQGIGSFLRQRRVEPTVTVYP 121 Query: 484 EKHPLLQRQNILVCSVTGFYTCSW*VRLFRNALQEDAGVVSTDLVPTGDWTLHTLVMLLT 663 K LQ N+LVCSV GFY VR F N+ +E+AGV+ST L+ GDWT T+VML T Sbjct: 122 AKTQPLQHHNLLVCSVNGFYPGHIEVRWFWNSHEEEAGVISTGLIQNGDWTFQTMVMLET 181 Query: 664 VPTCGK 681 VP G+ Sbjct: 182 VPQSGE 187 >ref|NP_001013618.1| major histocompatibility complex, class II, DO beta [Bos taurus] Length = 271 Score = 116 bits (290), Expect = 2e-26 Identities = 64/170 (37%), Positives = 91/170 (53%) Frame = +1 Query: 172 GRDTPLNFLYLLKFQCRFLNGTQRAKLLERQHHGA*EYVRFNGDMCEYQEVHELGPPVAH 351 GRD+P +F+ K C F NGT++ + + R +Y RF+ D+ + + ELG P A Sbjct: 26 GRDSPEDFVTQAKADCYFTNGTEKVRFVVRFIFNLEDYARFDSDLGMFVALTELGKPDAE 85 Query: 352 DRRCQNEVLDHKLVEVDT*CIQDSRTSVYFLVTRQVDPIVTVYREKHPLLQRQNILVCSV 531 + ++L VD C ++ F V R+V P VTVY EK P LQ +N+L+C V Sbjct: 86 RWNNRPDILARSRASVDMLCRRNYYLGAPFTVGRRVQPEVTVYPEKTPALQHRNLLLCLV 145 Query: 532 TGFYTCSW*VRLFRNALQEDAGVVSTDLVPTGDWTLHTLVMLLTVPTCGK 681 TGFY V FRN ++ G++ST L+ GDWT VML P G+ Sbjct: 146 TGFYPGDIKVTWFRNGQEQREGIMSTGLIRNGDWTFQMTVMLAMTPELGE 195 >ref|NP_001012697.1| major histocompatibility complex, class II, DY beta [Bos taurus] Length = 259 Score = 115 bits (289), Expect = 3e-26 Identities = 68/168 (40%), Positives = 88/168 (52%) Frame = +1 Query: 175 RDTPLNFLYLLKFQCRFLNGTQRAKLLERQHHGA*EYVRFNGDMCEYQEVHELGPPVAHD 354 RD P NF+Y K C F NGT+ +L+ RQ + E + F+ D+ E+ V ELG A Sbjct: 31 RDAPKNFVYQFKGMCYFTNGTEHVRLVARQIYNKEEILHFDSDLGEFVAVTELGRVCAEI 90 Query: 355 RRCQNEVLDHKLVEVDT*CIQDSRTSVYFLVTRQVDPIVTVYREKHPLLQRQNILVCSVT 534 Q ++L VDT C + + + F V R+V+P VTV L N+LVCSVT Sbjct: 91 WNTQKDLLAEFRAYVDTLCRHNYKETAGFTVQRRVEPTVTVSPASTEALNHHNLLVCSVT 150 Query: 535 GFYTCSW*VRLFRNALQEDAGVVSTDLVPTGDWTLHTLVMLLTVPTCG 678 FY V+ FRN ++ AGV T L GDWT VML TVP G Sbjct: 151 DFYPRQVKVKWFRNQQEQTAGVGFTPLTQNGDWTYQIHVMLETVPQLG 198 >ref|XP_876139.1| PREDICTED: similar to H-2 class II histocompatibility antigen, I-E beta chain precursor [Bos taurus] Length = 269 Score = 108 bits (271), Expect = 4e-24 Identities = 64/158 (40%), Positives = 83/158 (52%) Frame = +1 Query: 208 KFQCRFLNGTQRAKLLERQHHGA*EYVRFNGDMCEYQEVHELGPPVAHDRRCQNEVLDHK 387 K +C F NGTQ+ + L+R + E V+F+ + EY+ E+G P A + L Sbjct: 5 KSECHFSNGTQQVRFLDRYIYNREEQVQFDSLVGEYRARTEMGRPAAERWNRWPQALQRA 64 Query: 388 LVEVDT*CIQDSRTSVYFLVTRQVDPIVTVYREKHPLLQRQNILVCSVTGFYTCSW*VRL 567 V C + V R+V P VTVY K L N+LVCSV GFY VR Sbjct: 65 RAAVHAYCASNYEFFASRTVQRRVQPTVTVYPVKSRPLWHHNLLVCSVNGFYPGHIEVRW 124 Query: 568 FRNALQEDAGVVSTDLVPTGDWTLHTLVMLLTVPTCGK 681 FRN +E+AGVVST L+P GDWT +VML VP G+ Sbjct: 125 FRNGQEEEAGVVSTGLIPNGDWTFQIMVMLEIVPQGGE 162 >ref|XP_874766.1| PREDICTED: similar to HLA class II histocompatibility antigen, DRB1-7 beta chain precursor (MHC class I antigen DRB1*7) (DR-7) (DR7) [Bos taurus] Length = 347 Score = 73.6 bits (179), Expect = 2e-13 Identities = 38/77 (49%), Positives = 49/77 (63%) Frame = +1 Query: 451 RQVDPIVTVYREKHPLLQRQNILVCSVTGFYTCSW*VRLFRNALQEDAGVVSTDLVPTGD 630 ++V+P VTVY K LQ ++LVCSV GFY VR F +E+AGV+ST L+ GD Sbjct: 93 KKVEPTVTVYPAKTQPLQHNHLLVCSVNGFYLGHVEVRWFWKGQEEEAGVISTGLIQNGD 152 Query: 631 WTLHTLVMLLTVPTCGK 681 WT T+VML TV G+ Sbjct: 153 WTFETIVMLETVLQSGE 169 Database: RefSeqBP Posted date: Aug 1, 2006 7:14 PM Number of letters in database: 16,112,626 Number of sequences in database: 33,508 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 29,825,996 Number of Sequences: 33508 Number of extensions: 813715 Number of successful extensions: 2510 Number of sequences better than 1.0e-05: 8 Number of HSP's better than 0.0 without gapping: 2295 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2506 length of database: 16,112,626 effective HSP length: 100 effective length of database: 12,761,826 effective search space used: 2246081376 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
Search to RefSeqHP
BLASTX 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= 20060611S-041111 (832 letters) Database: RefSeqHP 39,411 sequences; 17,774,539 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Alignment gi|NP_002115.1| major histocompatibility complex, class II, DR ... 163 1e-40 Alignment gi|XP_945926.1| PREDICTED: similar to HLA class II histocompati... 161 7e-40 Alignment gi|XP_949921.1| PREDICTED: similar to HLA class II histocompati... 161 7e-40 Alignment gi|NP_072049.2| major histocompatibility complex, class II, DR ... 161 7e-40 Alignment gi|NP_068818.4| major histocompatibility complex, class II, DR ... 157 8e-39 Alignment gi|NP_002116.2| major histocompatibility complex, class II, DR ... 153 1e-37 Alignment gi|XP_949915.1| PREDICTED: similar to HLA class II histocompati... 144 7e-35 Alignment gi|NP_002114.2| major histocompatibility complex, class II, DQ ... 137 8e-33 Alignment gi|NP_872355.1| major histocompatibility complex, class II, DQ ... 136 2e-32 Alignment gi|NP_002111.1| major histocompatibility complex, class II, DO ... 124 1e-28 >ref|NP_002115.1| major histocompatibility complex, class II, DR beta 1 precursor [Homo sapiens] Length = 266 Score = 163 bits (413), Expect = 1e-40 Identities = 94/190 (49%), Positives = 116/190 (61%) Frame = +1 Query: 112 GFWRAAQTVMLVVLSRLMALGRDTPLNFLYLLKFQCRFLNGTQRAKLLERQHHGA*EYVR 291 G A TV L+VLS +AL DT FL+ LKF+C F NGT+R +LLER + E VR Sbjct: 9 GSCMTALTVTLMVLSSPLALAGDTRPRFLWQLKFECHFFNGTERVRLLERCIYNQEESVR 68 Query: 292 FNGDMCEYQEVHELGPPVAHDRRCQNEVLDHKLVEVDT*CIQDSRTSVYFLVTRQVDPIV 471 F+ D+ EY+ V ELG P A Q ++L+ + VDT C + F V R+V+P V Sbjct: 69 FDSDVGEYRAVTELGRPDAEYWNSQKDLLEQRRAAVDTYCRHNYGVGESFTVQRRVEPKV 128 Query: 472 TVYREKHPLLQRQNILVCSVTGFYTCSW*VRLFRNALQEDAGVVSTDLVPTGDWTLHTLV 651 TVY K LQ N+LVCSV+GFY S VR FRN +E AGVVST L+ GDWT TLV Sbjct: 129 TVYPSKTQPLQHHNLLVCSVSGFYPGSIEVRWFRNGQEEKAGVVSTGLIQNGDWTFQTLV 188 Query: 652 MLLTVPTCGK 681 ML TVP G+ Sbjct: 189 MLETVPRSGE 198 >ref|XP_945926.1| PREDICTED: similar to HLA class II histocompatibility antigen, DRB1-9 beta chain precursor (MHC class I antigen DRB1*9) (DR-9) (DR9) isoform 1 [Homo sapiens] Length = 266 Score = 161 bits (407), Expect = 7e-40 Identities = 94/190 (49%), Positives = 113/190 (59%) Frame = +1 Query: 112 GFWRAAQTVMLVVLSRLMALGRDTPLNFLYLLKFQCRFLNGTQRAKLLERQHHGA*EYVR 291 G AA TV L+VLS +AL DT FL KF+C F NGT+R + L R + E VR Sbjct: 9 GSCMAALTVTLMVLSSPLALAGDTQPRFLKQDKFECHFFNGTERVRYLHRGIYNQEENVR 68 Query: 292 FNGDMCEYQEVHELGPPVAHDRRCQNEVLDHKLVEVDT*CIQDSRTSVYFLVTRQVDPIV 471 F+ D+ EY+ V ELG PVA Q + L+ + EVDT C + F V R+V P V Sbjct: 69 FDSDVGEYRAVTELGRPVAESWNSQKDFLERRRAEVDTVCRHNYGVGESFTVQRRVHPEV 128 Query: 472 TVYREKHPLLQRQNILVCSVTGFYTCSW*VRLFRNALQEDAGVVSTDLVPTGDWTLHTLV 651 TVY K LQ N+LVCSV+GFY S VR FRN +E AGVVST L+ GDWT TLV Sbjct: 129 TVYPAKTQPLQHHNLLVCSVSGFYPGSIEVRWFRNGQEEKAGVVSTGLIQNGDWTFQTLV 188 Query: 652 MLLTVPTCGK 681 ML TVP G+ Sbjct: 189 MLETVPRSGE 198 >ref|XP_949921.1| PREDICTED: similar to HLA class II histocompatibility antigen, DRB1-9 beta chain precursor (MHC class I antigen DRB1*9) (DR-9) (DR9) isoform 3 [Homo sapiens] Length = 325 Score = 161 bits (407), Expect = 7e-40 Identities = 94/190 (49%), Positives = 113/190 (59%) Frame = +1 Query: 112 GFWRAAQTVMLVVLSRLMALGRDTPLNFLYLLKFQCRFLNGTQRAKLLERQHHGA*EYVR 291 G AA TV L+VLS +AL DT FL KF+C F NGT+R + L R + E VR Sbjct: 9 GSCMAALTVTLMVLSSPLALAGDTQPRFLKQDKFECHFFNGTERVRYLHRGIYNQEENVR 68 Query: 292 FNGDMCEYQEVHELGPPVAHDRRCQNEVLDHKLVEVDT*CIQDSRTSVYFLVTRQVDPIV 471 F+ D+ EY+ V ELG PVA Q + L+ + EVDT C + F V R+V P V Sbjct: 69 FDSDVGEYRAVTELGRPVAESWNSQKDFLERRRAEVDTVCRHNYGVGESFTVQRRVHPEV 128 Query: 472 TVYREKHPLLQRQNILVCSVTGFYTCSW*VRLFRNALQEDAGVVSTDLVPTGDWTLHTLV 651 TVY K LQ N+LVCSV+GFY S VR FRN +E AGVVST L+ GDWT TLV Sbjct: 129 TVYPAKTQPLQHHNLLVCSVSGFYPGSIEVRWFRNGQEEKAGVVSTGLIQNGDWTFQTLV 188 Query: 652 MLLTVPTCGK 681 ML TVP G+ Sbjct: 189 MLETVPRSGE 198 >ref|NP_072049.2| major histocompatibility complex, class II, DR beta 3 precursor [Homo sapiens] Length = 266 Score = 161 bits (407), Expect = 7e-40 Identities = 91/186 (48%), Positives = 112/186 (60%) Frame = +1 Query: 124 AAQTVMLVVLSRLMALGRDTPLNFLYLLKFQCRFLNGTQRAKLLERQHHGA*EYVRFNGD 303 AA TV L+VLS +A DT FL L K +C F NGT+R + L+R H E++RF+ D Sbjct: 13 AALTVTLMVLSSRLAFAGDTRPRFLELRKSECHFFNGTERVRYLDRYFHNQEEFLRFDSD 72 Query: 304 MCEYQEVHELGPPVAHDRRCQNEVLDHKLVEVDT*CIQDSRTSVYFLVTRQVDPIVTVYR 483 + EY+ V ELG PVA Q ++L+ K VD C + F V R+V P VTVY Sbjct: 73 VGEYRAVTELGRPVAESWNSQKDLLEQKRGRVDNYCRHNYGVGESFTVQRRVHPQVTVYP 132 Query: 484 EKHPLLQRQNILVCSVTGFYTCSW*VRLFRNALQEDAGVVSTDLVPTGDWTLHTLVMLLT 663 K LQ N+LVCSV+GFY S VR FRN +E AGVVST L+ GDWT TLVML T Sbjct: 133 AKTQPLQHHNLLVCSVSGFYPGSIEVRWFRNGQEEKAGVVSTGLIQNGDWTFQTLVMLET 192 Query: 664 VPTCGK 681 VP G+ Sbjct: 193 VPRSGE 198 >ref|NP_068818.4| major histocompatibility complex, class II, DR beta 4 precursor [Homo sapiens] Length = 266 Score = 157 bits (398), Expect = 8e-39 Identities = 94/190 (49%), Positives = 110/190 (57%) Frame = +1 Query: 112 GFWRAAQTVMLVVLSRLMALGRDTPLNFLYLLKFQCRFLNGTQRAKLLERQHHGA*EYVR 291 G AA TV L VLS +AL DT FL K +C FLNGT+R L R + EY R Sbjct: 9 GSCMAALTVTLTVLSSPLALAGDTQPRFLEQAKCECHFLNGTERVWNLIRYIYNQEEYAR 68 Query: 292 FNGDMCEYQEVHELGPPVAHDRRCQNEVLDHKLVEVDT*CIQDSRTSVYFLVTRQVDPIV 471 +N D+ EYQ V ELG P A Q ++L+ + EVDT C + F V R+V P V Sbjct: 69 YNSDLGEYQAVTELGRPDAEYWNSQKDLLERRRAEVDTYCRYNYGVVESFTVQRRVQPKV 128 Query: 472 TVYREKHPLLQRQNILVCSVTGFYTCSW*VRLFRNALQEDAGVVSTDLVPTGDWTLHTLV 651 TVY K LQ N+LVCSV GFY S VR FRN +E AGVVST L+ GDWT TLV Sbjct: 129 TVYPSKTQPLQHHNLLVCSVNGFYPGSIEVRWFRNGQEEKAGVVSTGLIQNGDWTFQTLV 188 Query: 652 MLLTVPTCGK 681 ML TVP G+ Sbjct: 189 MLETVPRSGE 198 >ref|NP_002116.2| major histocompatibility complex, class II, DR beta 5 precursor [Homo sapiens] Length = 266 Score = 153 bits (387), Expect = 1e-37 Identities = 88/190 (46%), Positives = 112/190 (58%) Frame = +1 Query: 112 GFWRAAQTVMLVVLSRLMALGRDTPLNFLYLLKFQCRFLNGTQRAKLLERQHHGA*EYVR 291 G + A TV L+VLS +AL DT FL K++C F NGT+R + L R + E +R Sbjct: 9 GSYMAKLTVTLMVLSSPLALAGDTRPRFLQQDKYECHFFNGTERVRFLHRDIYNQEEDLR 68 Query: 292 FNGDMCEYQEVHELGPPVAHDRRCQNEVLDHKLVEVDT*CIQDSRTSVYFLVTRQVDPIV 471 F+ D+ EY+ V ELG P A Q + L+ + VDT C + F V R+V+P V Sbjct: 69 FDSDVGEYRAVTELGRPDAEYWNSQKDFLEDRRAAVDTYCRHNYGVGESFTVQRRVEPKV 128 Query: 472 TVYREKHPLLQRQNILVCSVTGFYTCSW*VRLFRNALQEDAGVVSTDLVPTGDWTLHTLV 651 TVY + LQ N+LVCSV GFY S VR FRN+ +E AGVVST L+ GDWT TLV Sbjct: 129 TVYPARTQTLQHHNLLVCSVNGFYPGSIEVRWFRNSQEEKAGVVSTGLIQNGDWTFQTLV 188 Query: 652 MLLTVPTCGK 681 ML TVP G+ Sbjct: 189 MLETVPRSGE 198 >ref|XP_949915.1| PREDICTED: similar to HLA class II histocompatibility antigen, DRB1-9 beta chain precursor (MHC class I antigen DRB1*9) (DR-9) (DR9) isoform 2 [Homo sapiens] Length = 284 Score = 144 bits (364), Expect = 7e-35 Identities = 81/163 (49%), Positives = 98/163 (60%) Frame = +1 Query: 193 FLYLLKFQCRFLNGTQRAKLLERQHHGA*EYVRFNGDMCEYQEVHELGPPVAHDRRCQNE 372 FL KF+C F NGT+R + L R + E VRF+ D+ EY+ V ELG PVA Q + Sbjct: 54 FLKQDKFECHFFNGTERVRYLHRGIYNQEENVRFDSDVGEYRAVTELGRPVAESWNSQKD 113 Query: 373 VLDHKLVEVDT*CIQDSRTSVYFLVTRQVDPIVTVYREKHPLLQRQNILVCSVTGFYTCS 552 L+ + EVDT C + F V R+V P VTVY K LQ N+LVCSV+GFY S Sbjct: 114 FLERRRAEVDTVCRHNYGVGESFTVQRRVHPEVTVYPAKTQPLQHHNLLVCSVSGFYPGS 173 Query: 553 W*VRLFRNALQEDAGVVSTDLVPTGDWTLHTLVMLLTVPTCGK 681 VR FRN +E AGVVST L+ GDWT TLVML TVP G+ Sbjct: 174 IEVRWFRNGQEEKAGVVSTGLIQNGDWTFQTLVMLETVPRSGE 216 >ref|NP_002114.2| major histocompatibility complex, class II, DQ beta 1 precursor [Homo sapiens] Length = 261 Score = 137 bits (346), Expect = 8e-33 Identities = 79/194 (40%), Positives = 108/194 (55%) Frame = +1 Query: 97 LCVSRGFWRAAQTVMLVVLSRLMALGRDTPLNFLYLLKFQCRFLNGTQRAKLLERQHHGA 276 L + G A T+ML +LS +A GRD+P +F+Y K C F NGT+R +L+ R + Sbjct: 7 LRIPGGLRAATVTLMLSMLSTPVAEGRDSPEDFVYQFKGMCYFTNGTERVRLVSRSIYNR 66 Query: 277 *EYVRFNGDMCEYQEVHELGPPVAHDRRCQNEVLDHKLVEVDT*CIQDSRTSVYFLVTRQ 456 E VRF+ D+ E++ V LG P A Q ++L+ K VD C + + + + R+ Sbjct: 67 EEIVRFDSDVGEFRAVTLLGLPAAEYWNSQKDILERKRAAVDRVCRHNYQLELRTTLQRR 126 Query: 457 VDPIVTVYREKHPLLQRQNILVCSVTGFYTCSW*VRLFRNALQEDAGVVSTDLVPTGDWT 636 V+P VT+ + L N+LVCSVT FY VR FRN +E AGVVST L+ GDWT Sbjct: 127 VEPTVTISPSRTEALNHHNLLVCSVTDFYPAQIKVRWFRNDQEETAGVVSTPLIRNGDWT 186 Query: 637 LHTLVMLLTVPTCG 678 LVML P G Sbjct: 187 FQILVMLEMTPQRG 200 >ref|NP_872355.1| major histocompatibility complex, class II, DQ beta 2 [Homo sapiens] Length = 231 Score = 136 bits (343), Expect = 2e-32 Identities = 81/194 (41%), Positives = 106/194 (54%) Frame = +1 Query: 97 LCVSRGFWRAAQTVMLVVLSRLMALGRDTPLNFLYLLKFQCRFLNGTQRAKLLERQHHGA 276 L + GFW AA TVMLV+LS +A RD P +FL K C F NGT+R + + R + Sbjct: 7 LQIPGGFWAAAVTVMLVMLSTPVAEARDFPKDFLVQFKGMCYFTNGTERVRGVARYIYNR 66 Query: 277 *EYVRFNGDMCEYQEVHELGPPVAHDRRCQNEVLDHKLVEVDT*CIQDSRTSVYFLVTRQ 456 EY RF+ D+ E+Q V ELG + D + L+ + VD C + + + RQ Sbjct: 67 EEYGRFDSDVGEFQAVTELGRSI-EDWNNYKDFLEQERAAVDKVCRHNYEAELRTTLQRQ 125 Query: 457 VDPIVTVYREKHPLLQRQNILVCSVTGFYTCSW*VRLFRNALQEDAGVVSTDLVPTGDWT 636 V+P VT+ + L N+LVCSVT FY V+ FRN +E AGVVST L+ GDWT Sbjct: 126 VEPTVTISPSRTEALNHHNLLVCSVTDFYPAQIKVQWFRNDQEETAGVVSTSLIRNGDWT 185 Query: 637 LHTLVMLLTVPTCG 678 LVML P G Sbjct: 186 FQILVMLEITPQRG 199 >ref|NP_002111.1| major histocompatibility complex, class II, DO beta precursor [Homo sapiens] Length = 273 Score = 124 bits (310), Expect = 1e-28 Identities = 72/187 (38%), Positives = 99/187 (52%) Frame = +1 Query: 118 WRAAQTVMLVVLSRLMALGRDTPLNFLYLLKFQCRFLNGTQRAKLLERQHHGA*EYVRFN 297 W A V L L M G D+P +F+ K C F NGT++ + + R EYVRF+ Sbjct: 8 WVVALLVNLTRLDSSMTQGTDSPEDFVIQAKADCYFTNGTEKVQFVVRFIFNLEEYVRFD 67 Query: 298 GDMCEYQEVHELGPPVAHDRRCQNEVLDHKLVEVDT*CIQDSRTSVYFLVTRQVDPIVTV 477 D+ + + +LG P A + ++L+ VD C + R F V R+V P VTV Sbjct: 68 SDVGMFVALTKLGQPDAEQWNSRLDLLERSRQAVDGVCRHNYRLGAPFTVGRKVQPEVTV 127 Query: 478 YREKHPLLQRQNILVCSVTGFYTCSW*VRLFRNALQEDAGVVSTDLVPTGDWTLHTLVML 657 Y E+ PLL + N+L CSVTGFY ++ F N +E AGV+ST + GDWT T+VML Sbjct: 128 YPERTPLLHQHNLLHCSVTGFYPGDIKIKWFLNGQEERAGVMSTGPIRNGDWTFQTVVML 187 Query: 658 LTVPTCG 678 P G Sbjct: 188 EMTPELG 194 Database: RefSeqHP Posted date: Aug 2, 2006 12:57 AM Number of letters in database: 17,774,539 Number of sequences in database: 39,411 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 33,886,704 Number of Sequences: 39411 Number of extensions: 953907 Number of successful extensions: 3529 Number of sequences better than 1.0e-05: 10 Number of HSP's better than 0.0 without gapping: 2875 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3522 length of database: 17,774,539 effective HSP length: 101 effective length of database: 13,794,028 effective search space used: 2413954900 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
Search to RefSeqCP
BLASTX 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= 20060611S-041111 (832 letters) Database: RefSeqCP 33,732 sequences; 19,266,565 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Alignment gi|NP_001014768.1| MHC class II DLA DRB1 beta chain [Canis fami... 161 6e-40 Alignment gi|NP_001014403.1| MHC class II DLA-DQ beta chain b1 domain [Ca... 154 1e-37 Alignment gi|XP_861384.1| PREDICTED: similar to HLA class II histocompati... 127 1e-29 Alignment gi|XP_850395.1| PREDICTED: similar to HLA class II histocompati... 127 1e-29 >ref|NP_001014768.1| MHC class II DLA DRB1 beta chain [Canis familiaris] Length = 266 Score = 161 bits (408), Expect = 6e-40 Identities = 89/195 (45%), Positives = 115/195 (58%) Frame = +1 Query: 97 LCVSRGFWRAAQTVMLVVLSRLMALGRDTPLNFLYLLKFQCRFLNGTQRAKLLERQHHGA 276 LC G W A ++L+VL+ A RDTP +FL + K +C F NGT+R + +ER H Sbjct: 4 LCFLGGSWMTALMLILMVLNPPFAWARDTPPHFLEVAKSECYFTNGTERVRFVERYIHNR 63 Query: 277 *EYVRFNGDMCEYQEVHELGPPVAHDRRCQNEVLDHKLVEVDT*CIQDSRTSVYFLVTRQ 456 E+VRF+ D+ E++ V ELG PVA Q E+L+ + VDT C + F V R+ Sbjct: 64 EEFVRFDSDVGEFRAVTELGRPVAESWNGQKEILEQERATVDTYCRHNYGVIESFTVQRR 123 Query: 457 VDPIVTVYREKHPLLQRQNILVCSVTGFYTCSW*VRLFRNALQEDAGVVSTDLVPTGDWT 636 V+P VTVY K LQ N+LVCSV GFY VR RN +E+AGVVST L+ GDWT Sbjct: 124 VEPTVTVYPTKTQTLQHHNLLVCSVNGFYPGHIEVRWLRNGQEEEAGVVSTGLIRNGDWT 183 Query: 637 LHTLVMLLTVPTCGK 681 LVML VP G+ Sbjct: 184 FQILVMLEIVPQSGE 198 >ref|NP_001014403.1| MHC class II DLA-DQ beta chain b1 domain [Canis familiaris] Length = 269 Score = 154 bits (389), Expect = 1e-37 Identities = 84/194 (43%), Positives = 116/194 (59%) Frame = +1 Query: 97 LCVSRGFWRAAQTVMLVVLSRLMALGRDTPLNFLYLLKFQCRFLNGTQRAKLLERQHHGA 276 LC+ RGFW AA ++LVVLS +A GRD+P +F++ K +C F NGT+R +LL + + Sbjct: 7 LCIPRGFWTAAVMMILVVLSIPVAEGRDSPQDFVFQYKAECYFTNGTERVRLLTKYIYNR 66 Query: 277 *EYVRFNGDMCEYQEVHELGPPVAHDRRCQNEVLDHKLVEVDT*CIQDSRTSVYFLVTRQ 456 E+VRF+ D+ E++ V ELG P A Q + +D E+DT C + + R+ Sbjct: 67 EEFVRFDSDVGEFRAVTELGRPDAEYWNRQKDEMDRVRAELDTVCRHNYGREELTTLQRR 126 Query: 457 VDPIVTVYREKHPLLQRQNILVCSVTGFYTCSW*VRLFRNALQEDAGVVSTDLVPTGDWT 636 V+P VT++ K +L N+LVCSVT FY VR FRN ++ AGVVST L+ GDWT Sbjct: 127 VEPTVTIFPSKTEVLNHHNLLVCSVTDFYPGQIKVRWFRNDQEQTAGVVSTPLIRNGDWT 186 Query: 637 LHTLVMLLTVPTCG 678 LVML P G Sbjct: 187 FQILVMLEMTPQRG 200 >ref|XP_861384.1| PREDICTED: similar to HLA class II histocompatibility antigen, DO beta chain precursor (MHC class II antigen DOB) isoform 2 [Canis familiaris] Length = 228 Score = 127 bits (319), Expect = 1e-29 Identities = 71/187 (37%), Positives = 98/187 (52%) Frame = +1 Query: 118 WRAAQTVMLVVLSRLMALGRDTPLNFLYLLKFQCRFLNGTQRAKLLERQHHGA*EYVRFN 297 W A V + L M GRD+P +F+ K C F+NGT++ + + R EY RF+ Sbjct: 8 WMLALLVNVTGLDSSMTQGRDSPEDFVIQAKADCYFINGTEKVQFVVRFIFNLEEYARFD 67 Query: 298 GDMCEYQEVHELGPPVAHDRRCQNEVLDHKLVEVDT*CIQDSRTSVYFLVTRQVDPIVTV 477 + + + ELG P A Q +L+ VD C + F V R+V P VTV Sbjct: 68 SHVGMFVALTELGKPDAELWNSQPGILERSRASVDLLCRHNYELGAPFTVGRKVQPEVTV 127 Query: 478 YREKHPLLQRQNILVCSVTGFYTCSW*VRLFRNALQEDAGVVSTDLVPTGDWTLHTLVML 657 Y E+ P +Q N+L+CSVTGFY ++ FRN +E GV+ST L+ GDWT T+VML Sbjct: 128 YPERTPSMQHHNLLLCSVTGFYPGDIKIKWFRNGQEERVGVMSTGLIRNGDWTFQTMVML 187 Query: 658 LTVPTCG 678 P G Sbjct: 188 EMTPELG 194 >ref|XP_850395.1| PREDICTED: similar to HLA class II histocompatibility antigen, DO beta chain precursor (MHC class II antigen DOB) isoform 1 [Canis familiaris] Length = 270 Score = 127 bits (319), Expect = 1e-29 Identities = 71/187 (37%), Positives = 98/187 (52%) Frame = +1 Query: 118 WRAAQTVMLVVLSRLMALGRDTPLNFLYLLKFQCRFLNGTQRAKLLERQHHGA*EYVRFN 297 W A V + L M GRD+P +F+ K C F+NGT++ + + R EY RF+ Sbjct: 8 WMLALLVNVTGLDSSMTQGRDSPEDFVIQAKADCYFINGTEKVQFVVRFIFNLEEYARFD 67 Query: 298 GDMCEYQEVHELGPPVAHDRRCQNEVLDHKLVEVDT*CIQDSRTSVYFLVTRQVDPIVTV 477 + + + ELG P A Q +L+ VD C + F V R+V P VTV Sbjct: 68 SHVGMFVALTELGKPDAELWNSQPGILERSRASVDLLCRHNYELGAPFTVGRKVQPEVTV 127 Query: 478 YREKHPLLQRQNILVCSVTGFYTCSW*VRLFRNALQEDAGVVSTDLVPTGDWTLHTLVML 657 Y E+ P +Q N+L+CSVTGFY ++ FRN +E GV+ST L+ GDWT T+VML Sbjct: 128 YPERTPSMQHHNLLLCSVTGFYPGDIKIKWFRNGQEERVGVMSTGLIRNGDWTFQTMVML 187 Query: 658 LTVPTCG 678 P G Sbjct: 188 EMTPELG 194 Database: RefSeqCP Posted date: Aug 1, 2006 9:25 PM Number of letters in database: 19,266,565 Number of sequences in database: 33,732 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 34,963,326 Number of Sequences: 33732 Number of extensions: 951627 Number of successful extensions: 2904 Number of sequences better than 1.0e-05: 4 Number of HSP's better than 0.0 without gapping: 2648 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2901 length of database: 19,266,565 effective HSP length: 101 effective length of database: 15,859,633 effective search space used: 2775435775 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
Search to RefSeqMP
BLASTX 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= 20060611S-041111 (832 letters) Database: RefSeqMP 45,328 sequences; 21,768,885 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Alignment gi|NP_034512.1| histocompatibility 2, class II antigen E beta [... 150 2e-36 Alignment gi|NP_034519.2| histocompatibility 2, O region beta locus [Mus ... 135 5e-32 Alignment gi|NP_001029150.1| H-2 class II histocompatibility antigen E-a/... 118 6e-27 Alignment gi|NP_996988.1| histocompatibility 2, class II antigen A, beta ... 116 3e-26 >ref|NP_034512.1| histocompatibility 2, class II antigen E beta [Mus musculus] Length = 264 Score = 150 bits (378), Expect = 2e-36 Identities = 87/186 (46%), Positives = 112/186 (60%) Frame = +1 Query: 124 AAQTVMLVVLSRLMALGRDTPLNFLYLLKFQCRFLNGTQRAKLLERQHHGA*EYVRFNGD 303 AA ++L VLS +AL RD+ FL K +C F NGTQR + L+R + E +RF+ D Sbjct: 11 AAVILLLTVLSPPVALVRDSRPWFLEYCKSECHFYNGTQRVRFLKRYFYNLEENLRFDSD 70 Query: 304 MCEYQEVHELGPPVAHDRRCQNEVLDHKLVEVDT*CIQDSRTSVYFLVTRQVDPIVTVYR 483 + E++ V ELG P A + Q E+LD K VDT C + FLV R+V+P VTVY Sbjct: 71 VGEFRAVTELGRPDAENWNSQPEILDEKRAAVDTYCRHNYEIFDNFLVPRRVEPTVTVYP 130 Query: 484 EKHPLLQRQNILVCSVTGFYTCSW*VRLFRNALQEDAGVVSTDLVPTGDWTLHTLVMLLT 663 K L+ N+LVCSV+ FY + VR FRN +E G+VST LV GDWT TLVML T Sbjct: 131 TKTQPLEHHNLLVCSVSDFYPGNIEVRWFRNGKEEKTGIVSTGLVRNGDWTFQTLVMLET 190 Query: 664 VPTCGK 681 VP G+ Sbjct: 191 VPQSGE 196 >ref|NP_034519.2| histocompatibility 2, O region beta locus [Mus musculus] Length = 271 Score = 135 bits (340), Expect = 5e-32 Identities = 79/190 (41%), Positives = 104/190 (54%) Frame = +1 Query: 109 RGFWRAAQTVMLVVLSRLMALGRDTPLNFLYLLKFQCRFLNGTQRAKLLERQHHGA*EYV 288 R W A V L+ L M GRD+P NF+ K C F NGT++ LL R EY+ Sbjct: 5 RAPWVVALLVNLMRLDSFMIEGRDSPENFVIQAKADCYFTNGTEKVHLLVRFIFNLEEYL 64 Query: 289 RFNGDMCEYQEVHELGPPVAHDRRCQNEVLDHKLVEVDT*CIQDSRTSVYFLVTRQVDPI 468 F+ D+ + + ELG P A + ++L+ V+ C Q + F V R V P Sbjct: 65 HFDSDLGMFVALTELGEPDADQWNKRLDLLETSRAAVNMVCRQKYKLGAPFTVERNVPPE 124 Query: 469 VTVYREKHPLLQRQNILVCSVTGFYTCSW*VRLFRNALQEDAGVVSTDLVPTGDWTLHTL 648 VTVY E+ PLLQ+ N+L+CSVTGFY V+ FRN +E +GV+ST LV GDWT T Sbjct: 125 VTVYPERTPLLQQHNLLLCSVTGFYPGDISVKWFRNGQEERSGVMSTGLVRNGDWTFQTT 184 Query: 649 VMLLTVPTCG 678 VML +P G Sbjct: 185 VMLEMIPELG 194 >ref|NP_001029150.1| H-2 class II histocompatibility antigen E-a/k beta-2 [Mus musculus] Length = 287 Score = 118 bits (296), Expect = 6e-27 Identities = 75/195 (38%), Positives = 103/195 (52%) Frame = +1 Query: 97 LCVSRGFWRAAQTVMLVVLSRLMALGRDTPLNFLYLLKFQCRFLNGTQRAKLLERQHHGA 276 L + RG AA + L++L+ + L RD FL LK +C + NG +R + R + Sbjct: 4 LWLPRGLCVAAVILSLMMLTPPVILVRDPRPRFLEQLKAECHYFNGKERVWSVTRFIYNQ 63 Query: 277 *EYVRFNGDMCEYQEVHELGPPVAHDRRCQNEVLDHKLVEVDT*CIQDSRTSVYFLVTRQ 456 E+ RFN D ++ V ELG P+ Q ++LD+ VD C + F++ + Sbjct: 64 EEFARFNSDFGKFLAVTELGRPIVEYLNTQKDMLDNYRASVDR-CRNNYDLVDIFMLNLK 122 Query: 457 VDPIVTVYREKHPLLQRQNILVCSVTGFYTCSW*VRLFRNALQEDAGVVSTDLVPTGDWT 636 +P VTVY K L+ N+LVCSV FY S VR FRN +E GVVST L+ DWT Sbjct: 123 AEPKVTVYPAKTQPLEHHNLLVCSVIDFYPGSIEVRWFRNGEEEKTGVVSTGLIQNRDWT 182 Query: 637 LHTLVMLLTVPTCGK 681 TLVML VP G+ Sbjct: 183 YQTLVMLEMVPRGGE 197 >ref|NP_996988.1| histocompatibility 2, class II antigen A, beta 1 [Mus musculus] Length = 265 Score = 116 bits (290), Expect = 3e-26 Identities = 71/187 (37%), Positives = 97/187 (51%), Gaps = 1/187 (0%) Frame = +1 Query: 124 AAQTVMLVVLSRLMALGRDTPLNFLYLLKFQCRFLNGTQRAKLLERQHHGA*EYVRFNGD 303 +A V+L+VLS G D+ +F+Y +C F NGTQR + + R + EYVR++ D Sbjct: 11 SAAVVVLMVLSSPGTEGGDSERHFVYQFMGECYFTNGTQRIRYVTRYIYNREEYVRYDSD 70 Query: 304 MCEYQEVHELGPPVAHDRRCQNEVLDHKLVEVDT*CIQD-SRTSVYFLVTRQVDPIVTVY 480 + E++ V ELG P A Q E+L+ E+DT C + + + R P V + Sbjct: 71 VGEHRAVTELGRPDAEYWNSQPEILERTRAELDTVCRHNYEGPETHTSLRRLEQPNVVIS 130 Query: 481 REKHPLLQRQNILVCSVTGFYTCSW*VRLFRNALQEDAGVVSTDLVPTGDWTLHTLVMLL 660 + L N LVCSVT FY VR FRN +E GV ST L+ GDWT LVML Sbjct: 131 LSRTEALNHHNTLVCSVTDFYPTQIKVRWFRNGQEETVGVSSTQLIRNGDWTFQVLVMLE 190 Query: 661 TVPTCGK 681 P G+ Sbjct: 191 MTPRRGE 197 Database: RefSeqMP Posted date: Aug 2, 2006 12:58 AM Number of letters in database: 21,768,885 Number of sequences in database: 45,328 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 40,139,141 Number of Sequences: 45328 Number of extensions: 1093755 Number of successful extensions: 3371 Number of sequences better than 1.0e-05: 4 Number of HSP's better than 0.0 without gapping: 2998 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3365 length of database: 21,768,885 effective HSP length: 102 effective length of database: 17,145,429 effective search space used: 2983304646 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)