BLASTX 2.2.10 [Oct-19-2004]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20060611S-041563
(997 letters)
Database: RefSeqSP
1040 sequences; 434,620 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_999500.1| tropomyosin 4 [Sus scrofa] 233 5e-63
Alignment gi|NP_001001632.1| tropomyosin 3 [Sus scrofa] 150 6e-38
>ref|NP_999500.1| tropomyosin 4 [Sus scrofa]
Length = 248
Score = 233 bits (594), Expect = 5e-63
Identities = 140/248 (56%), Positives = 140/248 (56%), Gaps = 36/248 (14%)
Frame = +2
Query: 56 MAGLNSLEAVKRKIXXXXXXXXXXXXXXXGLQRELDGERERREKAEGDVAALNRRIQLVE 235
MAGLNSLEAVKRKI GLQRELDGERERREKAEGDVAALNRRIQLVE
Sbjct: 1 MAGLNSLEAVKRKIQALQQQADEAEDRAQGLQRELDGERERREKAEGDVAALNRRIQLVE 60
Query: 236 EELDRAQERXXXXXXXXXXXXXXXXXXXRGMKVIENRAMKDEEKMEIQ------------ 379
EELDRAQER RGMKVIENRAMKDEEKMEIQ
Sbjct: 61 EELDRAQERLATALQKLEEAEKAADESERGMKVIENRAMKDEEKMEIQEMQLKEAKHIAE 120
Query: 380 ------------------------ERAEVSELKCGDLEEELKNVTNNLXXXXXXXXXXXX 487
ERAEVSELKCGDLEEELKNVTNNL
Sbjct: 121 EADRKYEEVARKLVILEGELERAEERAEVSELKCGDLEEELKNVTNNLKSLEAASEKYSE 180
Query: 488 XXXXXXXXXXXXSDKLKXXXXXXXXXXXXXXKLEKTIDDLEEKLAQAKEENVGLHQTLDQ 667
SDKLK KLEKTIDDLEEKLAQAKEENVGLHQTLDQ
Sbjct: 181 KEDKYEEEIKLLSDKLKEAETRAEFAERTVAKLEKTIDDLEEKLAQAKEENVGLHQTLDQ 240
Query: 668 TLNELNCI 691
TLNELNCI
Sbjct: 241 TLNELNCI 248
>ref|NP_001001632.1| tropomyosin 3 [Sus scrofa]
Length = 248
Score = 150 bits (378), Expect = 6e-38
Identities = 94/246 (38%), Positives = 120/246 (48%), Gaps = 36/246 (14%)
Frame = +2
Query: 56 MAGLNSLEAVKRKIXXXXXXXXXXXXXXXGLQRELDGERERREKAEGDVAALNRRIQLVE 235
MAG+ ++EAVKRKI LQRE++GER RE+AE +VA+LNRRIQLVE
Sbjct: 1 MAGITTIEAVKRKIQVLQQQADDAEERAERLQREVEGERRAREQAEAEVASLNRRIQLVE 60
Query: 236 EELDRAQERXXXXXXXXXXXXXXXXXXXRGMKVIENRAMKDEEKMEIQ------------ 379
EELDRAQER RGMKVIENRA+KDEEKME+Q
Sbjct: 61 EELDRAQERLATALQKLEEAEKAADESERGMKVIENRALKDEEKMELQEIQLKEAKHIAE 120
Query: 380 ------------------------ERAEVSELKCGDLEEELKNVTNNLXXXXXXXXXXXX 487
ERAE++E +C +++E+++ + NL
Sbjct: 121 EADRKYEEVARKLVIIEGDLERTEERAELAESRCREMDEQIRLMDQNLKCLSAAEEKYSQ 180
Query: 488 XXXXXXXXXXXXSDKLKXXXXXXXXXXXXXXKLEKTIDDLEEKLAQAKEENVGLHQTLDQ 667
+DKLK KLEKTIDDLE+KL KEE++ + LDQ
Sbjct: 181 KEDKYEEEIKILTDKLKEAETRAEFAERSVAKLEKTIDDLEDKLKCTKEEHLCTQRMLDQ 240
Query: 668 TLNELN 685
TL +LN
Sbjct: 241 TLLDLN 246
Database: RefSeqSP
Posted date: Aug 1, 2006 7:14 PM
Number of letters in database: 434,620
Number of sequences in database: 1040
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 596,469
Number of Sequences: 1040
Number of extensions: 11424
Number of successful extensions: 45
Number of sequences better than 1.0e-05: 2
Number of HSP's better than 0.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 43
length of database: 434,620
effective HSP length: 77
effective length of database: 354,540
effective search space used: 90053160
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
Search to RefSeqBP
BLASTX 2.2.10 [Oct-19-2004]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20060611S-041563
(997 letters)
Database: RefSeqBP
33,508 sequences; 16,112,626 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_615314.2| PREDICTED: similar to tropomyosin 4 isoform 1 [... 189 3e-48
Alignment gi|XP_886860.1| PREDICTED: similar to tropomyosin 4 isoform 1 i... 186 2e-47
Alignment gi|XP_873616.1| PREDICTED: similar to tropomyosin 1, alpha isof... 186 2e-47
Alignment gi|XP_877353.1| PREDICTED: similar to tropomyosin 3 isoform 2 i... 145 4e-35
Alignment gi|XP_589950.1| PREDICTED: similar to tropomyosin 3 isoform 2 i... 145 4e-35
Alignment gi|NP_001011674.1| tropomyosin 3 [Bos taurus] 129 3e-30
Alignment gi|NP_001013608.1| tropomyosin 1 alpha chain [Bos taurus] 125 4e-29
Alignment gi|XP_874820.1| PREDICTED: similar to tropomyosin 3 isoform 2 i... 120 2e-27
Alignment gi|XP_876860.1| PREDICTED: similar to tropomyosin 3 isoform 2 i... 120 2e-27
Alignment gi|NP_001010995.2| tropomyosin 2 [Bos taurus] 112 6e-25
>ref|XP_615314.2| PREDICTED: similar to tropomyosin 4 isoform 1 [Bos taurus]
Length = 242
Score = 189 bits (480), Expect = 3e-48
Identities = 116/242 (47%), Positives = 125/242 (51%), Gaps = 36/242 (14%)
Frame = +2
Query: 74 LEAVKRKIXXXXXXXXXXXXXXXGLQRELDGERERREKAEGDVAALNRRIQLVEEELDRA 253
+EA+K+K+ + + E+ ++AEGDVAALNRRIQLVEEELDRA
Sbjct: 1 MEAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQAEGDVAALNRRIQLVEEELDRA 60
Query: 254 QERXXXXXXXXXXXXXXXXXXXRGMKVIENRAMKDEEKMEIQ------------------ 379
QER RGMKVIENRAMKDEEKMEIQ
Sbjct: 61 QERLATALQKLEEAEKAADESERGMKVIENRAMKDEEKMEIQEMQLKEAKHIAEEADRKY 120
Query: 380 ------------------ERAEVSELKCGDLEEELKNVTNNLXXXXXXXXXXXXXXXXXX 505
ERAEVSELKCGDLEEELKNVTNNL
Sbjct: 121 EEVARKLVILEGELERAEERAEVSELKCGDLEEELKNVTNNLKSLEAASEKYSEKEDKYE 180
Query: 506 XXXXXXSDKLKXXXXXXXXXXXXXXKLEKTIDDLEEKLAQAKEENVGLHQTLDQTLNELN 685
SDKLK KLEKTIDDLEEKLAQAKEENVGLHQTLDQTLNELN
Sbjct: 181 EEIKLLSDKLKEAETRAEFAERTVAKLEKTIDDLEEKLAQAKEENVGLHQTLDQTLNELN 240
Query: 686 CI 691
CI
Sbjct: 241 CI 242
>ref|XP_886860.1| PREDICTED: similar to tropomyosin 4 isoform 1 isoform 3 [Bos
taurus]
Length = 326
Score = 186 bits (472), Expect = 2e-47
Identities = 113/217 (52%), Positives = 117/217 (53%), Gaps = 36/217 (16%)
Frame = +2
Query: 149 QRELDGERERREKAEGDVAALNRRIQLVEEELDRAQERXXXXXXXXXXXXXXXXXXXRGM 328
Q +L+ ++ AEGDVAALNRRIQLVEEELDRAQER RGM
Sbjct: 110 QEKLELTEKKASDAEGDVAALNRRIQLVEEELDRAQERLATALQKLEEAEKAADESERGM 169
Query: 329 KVIENRAMKDEEKMEIQ------------------------------------ERAEVSE 400
KVIENRAMKDEEKMEIQ ERAEVSE
Sbjct: 170 KVIENRAMKDEEKMEIQEMQLKEAKHIAEEADRKYEEVARKLVILEGELERAEERAEVSE 229
Query: 401 LKCGDLEEELKNVTNNLXXXXXXXXXXXXXXXXXXXXXXXXSDKLKXXXXXXXXXXXXXX 580
LKCGDLEEELKNVTNNL SDKLK
Sbjct: 230 LKCGDLEEELKNVTNNLKSLEAASEKYSEKEDKYEEEIKLLSDKLKEAETRAEFAERTVA 289
Query: 581 KLEKTIDDLEEKLAQAKEENVGLHQTLDQTLNELNCI 691
KLEKTIDDLEEKLAQAKEENVGLHQTLDQTLNELNCI
Sbjct: 290 KLEKTIDDLEEKLAQAKEENVGLHQTLDQTLNELNCI 326
>ref|XP_873616.1| PREDICTED: similar to tropomyosin 1, alpha isoform 2 [Bos taurus]
Length = 284
Score = 186 bits (472), Expect = 2e-47
Identities = 113/217 (52%), Positives = 117/217 (53%), Gaps = 36/217 (16%)
Frame = +2
Query: 149 QRELDGERERREKAEGDVAALNRRIQLVEEELDRAQERXXXXXXXXXXXXXXXXXXXRGM 328
Q +L+ ++ AEGDVAALNRRIQLVEEELDRAQER RGM
Sbjct: 68 QEKLELTEKKASDAEGDVAALNRRIQLVEEELDRAQERLATALQKLEEAEKAADESERGM 127
Query: 329 KVIENRAMKDEEKMEIQ------------------------------------ERAEVSE 400
KVIENRAMKDEEKMEIQ ERAEVSE
Sbjct: 128 KVIENRAMKDEEKMEIQEMQLKEAKHIAEEADRKYEEVARKLVILEGELERAEERAEVSE 187
Query: 401 LKCGDLEEELKNVTNNLXXXXXXXXXXXXXXXXXXXXXXXXSDKLKXXXXXXXXXXXXXX 580
LKCGDLEEELKNVTNNL SDKLK
Sbjct: 188 LKCGDLEEELKNVTNNLKSLEAASEKYSEKEDKYEEEIKLLSDKLKEAETRAEFAERTVA 247
Query: 581 KLEKTIDDLEEKLAQAKEENVGLHQTLDQTLNELNCI 691
KLEKTIDDLEEKLAQAKEENVGLHQTLDQTLNELNCI
Sbjct: 248 KLEKTIDDLEEKLAQAKEENVGLHQTLDQTLNELNCI 284
>ref|XP_877353.1| PREDICTED: similar to tropomyosin 3 isoform 2 isoform 8 [Bos
taurus]
Length = 248
Score = 145 bits (367), Expect = 4e-35
Identities = 93/246 (37%), Positives = 119/246 (48%), Gaps = 36/246 (14%)
Frame = +2
Query: 56 MAGLNSLEAVKRKIXXXXXXXXXXXXXXXGLQRELDGERERREKAEGDVAALNRRIQLVE 235
MAG+ ++EAVKRKI LQRE++GE RE+AE +VA+LNRRIQLVE
Sbjct: 1 MAGIPTIEAVKRKIQVLQQQADDAQERAERLQREVEGEGRAREQAEAEVASLNRRIQLVE 60
Query: 236 EELDRAQERXXXXXXXXXXXXXXXXXXXRGMKVIENRAMKDEEKMEIQ------------ 379
EELDRAQER RGMKVIEN+A+KDEEKME+Q
Sbjct: 61 EELDRAQERLATALQKLEEAEKAADESERGMKVIENQALKDEEKMELQEIQLKEAKHIAE 120
Query: 380 ------------------------ERAEVSELKCGDLEEELKNVTNNLXXXXXXXXXXXX 487
ERAE++E +C +++E++K + NL
Sbjct: 121 EADRKYEEVARKLVIIDGDLEGTEERAELAESRCREMDEQIKLMDQNLKCLSAAEEKYSQ 180
Query: 488 XXXXXXXXXXXXSDKLKXXXXXXXXXXXXXXKLEKTIDDLEEKLAQAKEENVGLHQTLDQ 667
+DKLK KLEKTIDDLE+KL KEE++ + LDQ
Sbjct: 181 KEDKYKEEIKILTDKLKEAETRAEFAERLVAKLEKTIDDLEDKLKCTKEEHLCTQRMLDQ 240
Query: 668 TLNELN 685
TL +LN
Sbjct: 241 TLLDLN 246
>ref|XP_589950.1| PREDICTED: similar to tropomyosin 3 isoform 2 isoform 1 [Bos
taurus]
Length = 248
Score = 145 bits (367), Expect = 4e-35
Identities = 93/246 (37%), Positives = 119/246 (48%), Gaps = 36/246 (14%)
Frame = +2
Query: 56 MAGLNSLEAVKRKIXXXXXXXXXXXXXXXGLQRELDGERERREKAEGDVAALNRRIQLVE 235
MAG+ ++EAVKRKI LQRE++GE RE+AE +VA+LNRRIQLVE
Sbjct: 1 MAGIPTIEAVKRKIQVLQQQADDAQERAERLQREVEGEGRAREQAEAEVASLNRRIQLVE 60
Query: 236 EELDRAQERXXXXXXXXXXXXXXXXXXXRGMKVIENRAMKDEEKMEIQ------------ 379
EELDRAQER RGMKVIEN+A+KDEEKME+Q
Sbjct: 61 EELDRAQERLATALQKLEEAEKAADESERGMKVIENQALKDEEKMELQEIQLKEAKHIAE 120
Query: 380 ------------------------ERAEVSELKCGDLEEELKNVTNNLXXXXXXXXXXXX 487
ERAE++E +C +++E++K + NL
Sbjct: 121 EADRKYEEVARKLVIIDGDLEGTEERAELAESRCREMDEQIKLMDQNLKCLSAAEEKYSQ 180
Query: 488 XXXXXXXXXXXXSDKLKXXXXXXXXXXXXXXKLEKTIDDLEEKLAQAKEENVGLHQTLDQ 667
+DKLK KLEKTIDDLE+KL KEE++ + LDQ
Sbjct: 181 KEDKYKEEIKILTDKLKEAETRAEFAERLVAKLEKTIDDLEDKLKCTKEEHLCTQRMLDQ 240
Query: 668 TLNELN 685
TL +LN
Sbjct: 241 TLLDLN 246
>ref|NP_001011674.1| tropomyosin 3 [Bos taurus]
Length = 284
Score = 129 bits (325), Expect = 3e-30
Identities = 85/244 (34%), Positives = 109/244 (44%), Gaps = 36/244 (14%)
Frame = +2
Query: 68 NSLEAVKRKIXXXXXXXXXXXXXXXGLQRELDGERERREKAEGDVAALNRRIQLVEEELD 247
+ L A+++K+ Q +L+ ++ AE +VA+LNRRIQLVEEELD
Sbjct: 41 DELAAMQKKLKGTEDELDKYSEALKDAQEKLELAEKKAADAEAEVASLNRRIQLVEEELD 100
Query: 248 RAQERXXXXXXXXXXXXXXXXXXXRGMKVIENRAMKDEEKMEIQ---------------- 379
RAQER RGMKVIENRA+KDEEKME+Q
Sbjct: 101 RAQERLATALQKLEEAEKAADESERGMKVIENRALKDEEKMELQEIQLKEAKHIAEEADR 160
Query: 380 --------------------ERAEVSELKCGDLEEELKNVTNNLXXXXXXXXXXXXXXXX 499
ERAE++E KC +LEEELKNVTNNL
Sbjct: 161 KYEEVARKLVIIEGDLERTEERAELAESKCSELEEELKNVTNNLKSLEAQAEKYSQKEDK 220
Query: 500 XXXXXXXXSDKLKXXXXXXXXXXXXXXKLEKTIDDLEEKLAQAKEENVGLHQTLDQTLNE 679
+DKLK KLEKTIDDLE++L K + + + LD LN+
Sbjct: 221 YEEEIKILTDKLKEAETRAEFAERSVAKLEKTIDDLEDELYAQKLKYKAISEELDHALND 280
Query: 680 LNCI 691
+ I
Sbjct: 281 MTSI 284
>ref|NP_001013608.1| tropomyosin 1 alpha chain [Bos taurus]
Length = 284
Score = 125 bits (315), Expect = 4e-29
Identities = 85/244 (34%), Positives = 107/244 (43%), Gaps = 36/244 (14%)
Frame = +2
Query: 68 NSLEAVKRKIXXXXXXXXXXXXXXXGLQRELDGERERREKAEGDVAALNRRIQLVEEELD 247
+ L ++++K+ Q +L+ ++ AE DVA+LNRRIQLVEEELD
Sbjct: 41 DELVSLQKKLKATEDELDKYSEALKDAQEKLELAEKKATDAEADVASLNRRIQLVEEELD 100
Query: 248 RAQERXXXXXXXXXXXXXXXXXXXRGMKVIENRAMKDEEKMEIQ---------------- 379
RAQER RGMKVIE+RA KDEEKMEIQ
Sbjct: 101 RAQERLATALQKLEEAEKAADESERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAEDADR 160
Query: 380 --------------------ERAEVSELKCGDLEEELKNVTNNLXXXXXXXXXXXXXXXX 499
ERAE+SE KC +LEEELK VTNNL
Sbjct: 161 KYEEVARKLVIIESDLERAEERAELSEGKCAELEEELKTVTNNLKSLEAQAEKYSQKEDK 220
Query: 500 XXXXXXXXSDKLKXXXXXXXXXXXXXXKLEKTIDDLEEKLAQAKEENVGLHQTLDQTLNE 679
SDKLK KLEK+IDDLE++L K + + + LD LN+
Sbjct: 221 YEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEDELYAQKLKYKAISEELDHALND 280
Query: 680 LNCI 691
+ I
Sbjct: 281 MTSI 284
>ref|XP_874820.1| PREDICTED: similar to tropomyosin 3 isoform 2 isoform 2 [Bos
taurus]
Length = 248
Score = 120 bits (300), Expect = 2e-27
Identities = 82/246 (33%), Positives = 112/246 (45%), Gaps = 36/246 (14%)
Frame = +2
Query: 56 MAGLNSLEAVKRKIXXXXXXXXXXXXXXXGLQRELDGERERREKAEGDVAALNRRIQLVE 235
MA + EA+K KI LQ+++DGER RE+AE +V +LNRRIQLVE
Sbjct: 1 MAAIAVTEAMKCKIQVLQQQADDAEERAKRLQQKVDGERWAREQAEAEVVSLNRRIQLVE 60
Query: 236 EELDRAQERXXXXXXXXXXXXXXXXXXXRGMKVIENRAMKDEEKMEIQ------------ 379
EEL+RAQER R MKVIEN+A+KDEEKME+Q
Sbjct: 61 EELNRAQERLATALQKLEEAEKAADESERVMKVIENQALKDEEKMELQEIQLKEAKHIAE 120
Query: 380 ------------------------ERAEVSELKCGDLEEELKNVTNNLXXXXXXXXXXXX 487
ERAE+++ +C + E+++ + +L
Sbjct: 121 EAHRKYEEVARKLVIIEGDLERTEERAELAQSRCRKMGEQIRLMDQHLKCLSAAEEKYSQ 180
Query: 488 XXXXXXXXXXXXSDKLKXXXXXXXXXXXXXXKLEKTIDDLEEKLAQAKEENVGLHQTLDQ 667
++KLK KLEKTIDDLE+KL KEE++ + L+Q
Sbjct: 181 KEDKYEEEIKILTEKLKEAETRAEFAERSVAKLEKTIDDLEDKLKCTKEEDLCTQRMLNQ 240
Query: 668 TLNELN 685
TL +LN
Sbjct: 241 TLLDLN 246
>ref|XP_876860.1| PREDICTED: similar to tropomyosin 3 isoform 2 isoform 3 [Bos
taurus]
Length = 232
Score = 120 bits (300), Expect = 2e-27
Identities = 80/230 (34%), Positives = 110/230 (47%), Gaps = 20/230 (8%)
Frame = +2
Query: 56 MAGLNSLEAVKRKIXXXXXXXXXXXXXXXGLQRELDGERERREKAEGDVAALNRRIQLVE 235
MAG+ ++EAVKRKI LQRE++GE RE+AE +VA+LNRRIQLVE
Sbjct: 1 MAGIPTIEAVKRKIQVLQQQADDAQERAERLQREVEGEGRAREQAEAEVASLNRRIQLVE 60
Query: 236 EELDRAQERXXXXXXXXXXXXXXXXXXXRGMKVIENRAMK------DEEKMEI------- 376
EELDRAQER ++ I+ + K D + E+
Sbjct: 61 EELDRAQERLATALQKLEEAEKAADEKKMELQEIQLKEAKHIAEEADRKYEEVARKLVII 120
Query: 377 -------QERAEVSELKCGDLEEELKNVTNNLXXXXXXXXXXXXXXXXXXXXXXXXSDKL 535
+ERAE++E +C +++E++K + NL +DKL
Sbjct: 121 DGDLEGTEERAELAESRCREMDEQIKLMDQNLKCLSAAEEKYSQKEDKYKEEIKILTDKL 180
Query: 536 KXXXXXXXXXXXXXXKLEKTIDDLEEKLAQAKEENVGLHQTLDQTLNELN 685
K KLEKTIDDLE+KL KEE++ + LDQTL +LN
Sbjct: 181 KEAETRAEFAERLVAKLEKTIDDLEDKLKCTKEEHLCTQRMLDQTLLDLN 230
>ref|NP_001010995.2| tropomyosin 2 [Bos taurus]
Length = 284
Score = 112 bits (279), Expect = 6e-25
Identities = 76/241 (31%), Positives = 101/241 (41%), Gaps = 36/241 (14%)
Frame = +2
Query: 77 EAVKRKIXXXXXXXXXXXXXXXGLQRELDGERERREKAEGDVAALNRRIQLVEEELDRAQ 256
+A+++K+ Q +L+ ++ AE DVA+LNRRIQLVEEELDRAQ
Sbjct: 44 QALQKKLKGTEDEVEKYSESVKDAQEKLEQAEKKATDAEADVASLNRRIQLVEEELDRAQ 103
Query: 257 ERXXXXXXXXXXXXXXXXXXXRGMKVIENRAMKDEEKMEIQE------------------ 382
ER RGMKVIENRAMKDEEKME+QE
Sbjct: 104 ERLATALQKLEEAEKAADESERGMKVIENRAMKDEEKMELQEMQLKEAKHIAEDSDRKYE 163
Query: 383 ------------------RAEVSELKCGDLEEELKNVTNNLXXXXXXXXXXXXXXXXXXX 508
RAEV+E + LEEEL+ + L
Sbjct: 164 EVARKLVILEGELERSEERAEVAESRARQLEEELRTMDQALKSLMASEEEYSTKEDKYEE 223
Query: 509 XXXXXSDKLKXXXXXXXXXXXXXXKLEKTIDDLEEKLAQAKEENVGLHQTLDQTLNELNC 688
+KLK KLEKTIDDLE+++ K + + + LD LN++
Sbjct: 224 EIKLLEEKLKEAETRAEFAERSVAKLEKTIDDLEDEVYAQKMKYKAISEELDNALNDITS 283
Query: 689 I 691
+
Sbjct: 284 L 284
Database: RefSeqBP
Posted date: Aug 1, 2006 7:14 PM
Number of letters in database: 16,112,626
Number of sequences in database: 33,508
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 22,053,708
Number of Sequences: 33508
Number of extensions: 428649
Number of successful extensions: 1945
Number of sequences better than 1.0e-05: 10
Number of HSP's better than 0.0 without gapping: 1652
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1925
length of database: 16,112,626
effective HSP length: 102
effective length of database: 12,694,810
effective search space used: 2907111490
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
Search to RefSeqHP
BLASTX 2.2.10 [Oct-19-2004]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20060611S-041563
(997 letters)
Database: RefSeqHP
39,411 sequences; 17,774,539 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_003281.1| tropomyosin 4 [Homo sapiens] 233 2e-61
Alignment gi|XP_944147.1| PREDICTED: similar to tropomyosin 4 [Homo sapiens] 173 2e-43
Alignment gi|XP_372046.2| PREDICTED: similar to tropomyosin 4 [Homo sapiens] 168 6e-42
Alignment gi|NP_001018008.1| tropomyosin 1 alpha chain isoform 6 [Homo sa... 155 7e-38
Alignment gi|NP_705935.1| tropomyosin 3 isoform 2 [Homo sapiens] 150 2e-36
Alignment gi|NP_001018004.1| tropomyosin 1 alpha chain isoform 3 [Homo sa... 148 6e-36
Alignment gi|NP_001018007.1| tropomyosin 1 alpha chain isoform 2 [Homo sa... 148 8e-36
Alignment gi|NP_998839.1| tropomyosin 2 (beta) isoform 2 [Homo sapiens] 137 1e-32
Alignment gi|XP_950361.1| PREDICTED: similar to tropomyosin 4 isoform 3 [... 134 2e-31
Alignment gi|XP_950359.1| PREDICTED: similar to tropomyosin 4 isoform 2 [... 134 2e-31
>ref|NP_003281.1| tropomyosin 4 [Homo sapiens]
Length = 248
Score = 233 bits (594), Expect = 2e-61
Identities = 140/248 (56%), Positives = 140/248 (56%), Gaps = 36/248 (14%)
Frame = +2
Query: 56 MAGLNSLEAVKRKIXXXXXXXXXXXXXXXGLQRELDGERERREKAEGDVAALNRRIQLVE 235
MAGLNSLEAVKRKI GLQRELDGERERREKAEGDVAALNRRIQLVE
Sbjct: 1 MAGLNSLEAVKRKIQALQQQADEAEDRAQGLQRELDGERERREKAEGDVAALNRRIQLVE 60
Query: 236 EELDRAQERXXXXXXXXXXXXXXXXXXXRGMKVIENRAMKDEEKMEIQ------------ 379
EELDRAQER RGMKVIENRAMKDEEKMEIQ
Sbjct: 61 EELDRAQERLATALQKLEEAEKAADESERGMKVIENRAMKDEEKMEIQEMQLKEAKHIAE 120
Query: 380 ------------------------ERAEVSELKCGDLEEELKNVTNNLXXXXXXXXXXXX 487
ERAEVSELKCGDLEEELKNVTNNL
Sbjct: 121 EADRKYEEVARKLVILEGELERAEERAEVSELKCGDLEEELKNVTNNLKSLEAASEKYSE 180
Query: 488 XXXXXXXXXXXXSDKLKXXXXXXXXXXXXXXKLEKTIDDLEEKLAQAKEENVGLHQTLDQ 667
SDKLK KLEKTIDDLEEKLAQAKEENVGLHQTLDQ
Sbjct: 181 KEDKYEEEIKLLSDKLKEAETRAEFAERTVAKLEKTIDDLEEKLAQAKEENVGLHQTLDQ 240
Query: 668 TLNELNCI 691
TLNELNCI
Sbjct: 241 TLNELNCI 248
>ref|XP_944147.1| PREDICTED: similar to tropomyosin 4 [Homo sapiens]
Length = 214
Score = 173 bits (438), Expect = 2e-43
Identities = 106/196 (54%), Positives = 113/196 (57%), Gaps = 13/196 (6%)
Frame = +2
Query: 143 GLQRELDGERERREKAEGDVAALNRRIQLVEEELDRAQERXXXXXXXXXXXXXXXXXXXR 322
GLQRELDG+RERREKAEGDVAALNRRIQLVEEELDRAQER R
Sbjct: 19 GLQRELDGKRERREKAEGDVAALNRRIQLVEEELDRAQERLATALQKLEEAEKVADESER 78
Query: 323 GMKVIENRAMKDEEKMEIQER--------AEVSELKCGDLEEELKNVTNNLXXXXXXXXX 478
GMKVIENRAMKDEEKMEIQE AE ++ K + +L + L
Sbjct: 79 GMKVIENRAMKDEEKMEIQEMQLKEAKHIAEKADRKYEKVARKLVILEGELERAEERAEM 138
Query: 479 XXXXXXXXXXXXXXX-----SDKLKXXXXXXXXXXXXXXKLEKTIDDLEEKLAQAKEENV 643
SDK+K KLEKTIDDLEEKLAQAKEENV
Sbjct: 139 PASEKYSEKEDKYEEEIKLLSDKVKEAETRAEFAERTVAKLEKTIDDLEEKLAQAKEENV 198
Query: 644 GLHQTLDQTLNELNCI 691
GLHQTLDQTLNELNCI
Sbjct: 199 GLHQTLDQTLNELNCI 214
>ref|XP_372046.2| PREDICTED: similar to tropomyosin 4 [Homo sapiens]
Length = 214
Score = 168 bits (426), Expect = 6e-42
Identities = 104/196 (53%), Positives = 111/196 (56%), Gaps = 13/196 (6%)
Frame = +2
Query: 143 GLQRELDGERERREKAEGDVAALNRRIQLVEEELDRAQERXXXXXXXXXXXXXXXXXXXR 322
GLQRELDG+RE REKAEGDVA LNRRIQLVEEELDRAQER R
Sbjct: 19 GLQRELDGKREWREKAEGDVATLNRRIQLVEEELDRAQERLATALQKLEEAEKVADESER 78
Query: 323 GMKVIENRAMKDEEKMEIQER--------AEVSELKCGDLEEELKNVTNNLXXXXXXXXX 478
GMKVIENRAMKDEEKMEIQE AE ++ K + +L + L
Sbjct: 79 GMKVIENRAMKDEEKMEIQEMQLKEAKHIAEKADRKYEKVARKLVILEGELERAEERAEM 138
Query: 479 XXXXXXXXXXXXXXX-----SDKLKXXXXXXXXXXXXXXKLEKTIDDLEEKLAQAKEENV 643
SDK+K KLEKTIDDLEEKLAQAKEENV
Sbjct: 139 PASEKYSEKEDKYEEEIKLLSDKVKEAETRAEFAERTVAKLEKTIDDLEEKLAQAKEENV 198
Query: 644 GLHQTLDQTLNELNCI 691
GLHQTLDQTLNELNCI
Sbjct: 199 GLHQTLDQTLNELNCI 214
>ref|NP_001018008.1| tropomyosin 1 alpha chain isoform 6 [Homo sapiens]
Length = 245
Score = 155 bits (391), Expect = 7e-38
Identities = 104/244 (42%), Positives = 115/244 (47%), Gaps = 36/244 (14%)
Frame = +2
Query: 56 MAGLNSLEAVKRKIXXXXXXXXXXXXXXXGLQRELDGERERREKAEGDVAALNRRIQLVE 235
MAG +SLEAV+RKI LQRELD ER+ RE AE DVA+LNRRIQLVE
Sbjct: 1 MAGSSSLEAVRRKIRSLQEQADAAEERAGTLQRELDHERKLRETAEADVASLNRRIQLVE 60
Query: 236 EELDRAQERXXXXXXXXXXXXXXXXXXXRGMKVIENRAMKDEEKMEIQ------------ 379
EELDRAQER RGMKVIE+RA KDEEKMEIQ
Sbjct: 61 EELDRAQERLATALQKLEEAEKAADESERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAE 120
Query: 380 ------------------------ERAEVSELKCGDLEEELKNVTNNLXXXXXXXXXXXX 487
ERAE+SE KC +LEEELK VTNNL
Sbjct: 121 DADRKYEEVARKLVIIESDLERAEERAELSEGKCAELEEELKTVTNNLKSLEAQAEKYSQ 180
Query: 488 XXXXXXXXXXXXSDKLKXXXXXXXXXXXXXXKLEKTIDDLEEKLAQAKEENVGLHQTLDQ 667
SDKLK KLEK+IDDLE++L Q E+N L L
Sbjct: 181 KEDRYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEDQLYQQLEQNRRLTNELKL 240
Query: 668 TLNE 679
LNE
Sbjct: 241 ALNE 244
>ref|NP_705935.1| tropomyosin 3 isoform 2 [Homo sapiens]
Length = 248
Score = 150 bits (378), Expect = 2e-36
Identities = 94/246 (38%), Positives = 120/246 (48%), Gaps = 36/246 (14%)
Frame = +2
Query: 56 MAGLNSLEAVKRKIXXXXXXXXXXXXXXXGLQRELDGERERREKAEGDVAALNRRIQLVE 235
MAG+ ++EAVKRKI LQRE++GER RE+AE +VA+LNRRIQLVE
Sbjct: 1 MAGITTIEAVKRKIQVLQQQADDAEERAERLQREVEGERRAREQAEAEVASLNRRIQLVE 60
Query: 236 EELDRAQERXXXXXXXXXXXXXXXXXXXRGMKVIENRAMKDEEKMEIQ------------ 379
EELDRAQER RGMKVIENRA+KDEEKME+Q
Sbjct: 61 EELDRAQERLATALQKLEEAEKAADESERGMKVIENRALKDEEKMELQEIQLKEAKHIAE 120
Query: 380 ------------------------ERAEVSELKCGDLEEELKNVTNNLXXXXXXXXXXXX 487
ERAE++E +C +++E+++ + NL
Sbjct: 121 EADRKYEEVARKLVIIEGDLERTEERAELAESRCREMDEQIRLMDQNLKCLSAAEEKYSQ 180
Query: 488 XXXXXXXXXXXXSDKLKXXXXXXXXXXXXXXKLEKTIDDLEEKLAQAKEENVGLHQTLDQ 667
+DKLK KLEKTIDDLE+KL KEE++ + LDQ
Sbjct: 181 KEDKYEEEIKILTDKLKEAETRAEFAERSVAKLEKTIDDLEDKLKCTKEEHLCTQRMLDQ 240
Query: 668 TLNELN 685
TL +LN
Sbjct: 241 TLLDLN 246
>ref|NP_001018004.1| tropomyosin 1 alpha chain isoform 3 [Homo sapiens]
Length = 284
Score = 148 bits (374), Expect = 6e-36
Identities = 96/242 (39%), Positives = 114/242 (47%), Gaps = 36/242 (14%)
Frame = +2
Query: 68 NSLEAVKRKIXXXXXXXXXXXXXXXGLQRELDGERERREKAEGDVAALNRRIQLVEEELD 247
+ L ++++K+ Q +L+ ++ AE DVA+LNRRIQLVEEELD
Sbjct: 41 DELVSLQKKLKGTEDELDKYSEALKDAQEKLELAEKKATDAEADVASLNRRIQLVEEELD 100
Query: 248 RAQERXXXXXXXXXXXXXXXXXXXRGMKVIENRAMKDEEKMEIQ---------------- 379
RAQER RGMKVIE+RA KDEEKMEIQ
Sbjct: 101 RAQERLATALQKLEEAEKAADESERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAEDADR 160
Query: 380 --------------------ERAEVSELKCGDLEEELKNVTNNLXXXXXXXXXXXXXXXX 499
ERAE+SE KC +LEEELK VTNNL
Sbjct: 161 KYEEVARKLVIIESDLERAEERAELSEGKCAELEEELKTVTNNLKSLEAQAEKYSQKEDR 220
Query: 500 XXXXXXXXSDKLKXXXXXXXXXXXXXXKLEKTIDDLEEKLAQAKEENVGLHQTLDQTLNE 679
SDKLK KLEK+IDDLEEK+A AKEEN+ +HQ LDQTL E
Sbjct: 221 YEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEEKVAHAKEENLSMHQMLDQTLLE 280
Query: 680 LN 685
LN
Sbjct: 281 LN 282
>ref|NP_001018007.1| tropomyosin 1 alpha chain isoform 2 [Homo sapiens]
Length = 284
Score = 148 bits (373), Expect = 8e-36
Identities = 94/207 (45%), Positives = 102/207 (49%), Gaps = 36/207 (17%)
Frame = +2
Query: 173 ERREKAEGDVAALNRRIQLVEEELDRAQERXXXXXXXXXXXXXXXXXXXRGMKVIENRAM 352
E KAE DVA+LNRRIQLVEEELDRAQER RGMKVIE+RA
Sbjct: 76 EAAAKAEADVASLNRRIQLVEEELDRAQERLATALQKLEEAEKAADESERGMKVIESRAQ 135
Query: 353 KDEEKMEIQ------------------------------------ERAEVSELKCGDLEE 424
KDEEKMEIQ ERAE+SE KC +LEE
Sbjct: 136 KDEEKMEIQEIQLKEAKHIAEDADRKYEEVARKLVIIESDLERAEERAELSEGKCAELEE 195
Query: 425 ELKNVTNNLXXXXXXXXXXXXXXXXXXXXXXXXSDKLKXXXXXXXXXXXXXXKLEKTIDD 604
ELK VTNNL SDKLK KLEK+IDD
Sbjct: 196 ELKTVTNNLKSLEAQAEKYSQKEDRYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDD 255
Query: 605 LEEKLAQAKEENVGLHQTLDQTLNELN 685
LEEK+A AKEEN+ +HQ LDQTL ELN
Sbjct: 256 LEEKVAHAKEENLSMHQMLDQTLLELN 282
>ref|NP_998839.1| tropomyosin 2 (beta) isoform 2 [Homo sapiens]
Length = 284
Score = 137 bits (346), Expect = 1e-32
Identities = 91/239 (38%), Positives = 108/239 (45%), Gaps = 36/239 (15%)
Frame = +2
Query: 77 EAVKRKIXXXXXXXXXXXXXXXGLQRELDGERERREKAEGDVAALNRRIQLVEEELDRAQ 256
+A+++K+ Q +L+ ++ AE DVA+LNRRIQLVEEELDRAQ
Sbjct: 44 QALQKKLKGTEDEVEKYSESVKEAQEKLEQAEKKATDAEADVASLNRRIQLVEEELDRAQ 103
Query: 257 ERXXXXXXXXXXXXXXXXXXXRGMKVIENRAMKDEEKMEIQE------------------ 382
ER RGMKVIENRAMKDEEKME+QE
Sbjct: 104 ERLATALQKLEEAEKAADESERGMKVIENRAMKDEEKMELQEMQLKEAKHIAEDSDRKYE 163
Query: 383 ------------------RAEVSELKCGDLEEELKNVTNNLXXXXXXXXXXXXXXXXXXX 508
RAEV+E + LEEEL+ + L
Sbjct: 164 EVARKLVILEGELERSEERAEVAESRARQLEEELRTMDQALKSLMASEEEYSTKEDKYEE 223
Query: 509 XXXXXSDKLKXXXXXXXXXXXXXXKLEKTIDDLEEKLAQAKEENVGLHQTLDQTLNELN 685
+KLK KLEKTIDDLEE LA AKEENV +HQTLDQTL ELN
Sbjct: 224 EIKLLEEKLKEAETRAEFAERSVAKLEKTIDDLEETLASAKEENVEIHQTLDQTLLELN 282
>ref|XP_950361.1| PREDICTED: similar to tropomyosin 4 isoform 3 [Homo sapiens]
Length = 158
Score = 134 bits (336), Expect = 2e-31
Identities = 82/158 (51%), Positives = 82/158 (51%), Gaps = 36/158 (22%)
Frame = +2
Query: 326 MKVIENRAMKDEEKMEIQE------------------------------------RAEVS 397
MKVIENRAMKDEEKMEIQE R EVS
Sbjct: 1 MKVIENRAMKDEEKMEIQELQLKEAKHIAEEADRKYWEVARKLVFLEGELERAEERVEVS 60
Query: 398 ELKCGDLEEELKNVTNNLXXXXXXXXXXXXXXXXXXXXXXXXSDKLKXXXXXXXXXXXXX 577
ELKCGDLEEELKNVTNNL DKLK
Sbjct: 61 ELKCGDLEEELKNVTNNLKSLEAASEKYSEKEDKCEEEIKLLCDKLKEAETRAEFAERTV 120
Query: 578 XKLEKTIDDLEEKLAQAKEENVGLHQTLDQTLNELNCI 691
KLEKTIDDLEEKLAQAKEENVGLHQTLDQTLNELNCI
Sbjct: 121 AKLEKTIDDLEEKLAQAKEENVGLHQTLDQTLNELNCI 158
>ref|XP_950359.1| PREDICTED: similar to tropomyosin 4 isoform 2 [Homo sapiens]
Length = 158
Score = 134 bits (336), Expect = 2e-31
Identities = 82/158 (51%), Positives = 82/158 (51%), Gaps = 36/158 (22%)
Frame = +2
Query: 326 MKVIENRAMKDEEKMEIQE------------------------------------RAEVS 397
MKVIENRAMKDEEKMEIQE R EVS
Sbjct: 1 MKVIENRAMKDEEKMEIQELQLKEAKHIAEEADRKYWEVARKLVFLEGELERAEERVEVS 60
Query: 398 ELKCGDLEEELKNVTNNLXXXXXXXXXXXXXXXXXXXXXXXXSDKLKXXXXXXXXXXXXX 577
ELKCGDLEEELKNVTNNL DKLK
Sbjct: 61 ELKCGDLEEELKNVTNNLKSLEAASEKYSEKEDKCEEEIKLLCDKLKEAETRAEFAERTV 120
Query: 578 XKLEKTIDDLEEKLAQAKEENVGLHQTLDQTLNELNCI 691
KLEKTIDDLEEKLAQAKEENVGLHQTLDQTLNELNCI
Sbjct: 121 AKLEKTIDDLEEKLAQAKEENVGLHQTLDQTLNELNCI 158
Database: RefSeqHP
Posted date: Aug 2, 2006 12:57 AM
Number of letters in database: 17,774,539
Number of sequences in database: 39,411
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 24,768,189
Number of Sequences: 39411
Number of extensions: 491997
Number of successful extensions: 2411
Number of sequences better than 1.0e-05: 10
Number of HSP's better than 0.0 without gapping: 2015
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2368
length of database: 17,774,539
effective HSP length: 102
effective length of database: 13,754,617
effective search space used: 3149807293
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
Search to RefSeqCP
BLASTX 2.2.10 [Oct-19-2004]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20060611S-041563
(997 letters)
Database: RefSeqCP
33,732 sequences; 19,266,565 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_865148.1| PREDICTED: similar to tropomyosin 1 alpha chain... 179 5e-45
Alignment gi|XP_865805.1| PREDICTED: similar to tropomyosin 3 isoform 2 i... 166 2e-41
Alignment gi|XP_865093.1| PREDICTED: similar to tropomyosin 1 alpha chain... 160 2e-39
Alignment gi|XP_865836.1| PREDICTED: similar to tropomyosin 3, gamma isof... 158 9e-39
Alignment gi|XP_864963.1| PREDICTED: similar to tropomyosin 1 alpha chain... 156 3e-38
Alignment gi|XP_865128.1| PREDICTED: similar to tropomyosin 1 alpha chain... 155 4e-38
Alignment gi|XP_865053.1| PREDICTED: similar to tropomyosin 1 alpha chain... 154 1e-37
Alignment gi|XP_541810.2| PREDICTED: similar to tropomyosin 3 isoform 2 i... 150 2e-36
Alignment gi|XP_865919.1| PREDICTED: similar to tropomyosin 3 isoform 2 i... 150 2e-36
Alignment gi|XP_865731.1| PREDICTED: similar to tropomyosin 3 isoform 2 i... 150 2e-36
>ref|XP_865148.1| PREDICTED: similar to tropomyosin 1 alpha chain isoform 6 isoform
19 [Canis familiaris]
Length = 248
Score = 179 bits (453), Expect = 5e-45
Identities = 113/246 (45%), Positives = 124/246 (50%), Gaps = 36/246 (14%)
Frame = +2
Query: 56 MAGLNSLEAVKRKIXXXXXXXXXXXXXXXGLQRELDGERERREKAEGDVAALNRRIQLVE 235
MAG +SLEAV+RKI LQRELD ER+ RE AE DVA+LNRRIQLVE
Sbjct: 1 MAGSSSLEAVRRKIRSLQEQADAAEERAGSLQRELDYERKLRETAEADVASLNRRIQLVE 60
Query: 236 EELDRAQERXXXXXXXXXXXXXXXXXXXRGMKVIENRAMKDEEKMEIQ------------ 379
EELDRAQER RGMKVIE+RA KDEEKMEIQ
Sbjct: 61 EELDRAQERLATALQKLEEAEKAADESERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAE 120
Query: 380 ------------------------ERAEVSELKCGDLEEELKNVTNNLXXXXXXXXXXXX 487
ERAE+SE KC +LEEELK VTNNL
Sbjct: 121 DADRKYEEVARKLVIIESDLERAEERAELSESKCAELEEELKTVTNNLKSLEAQAEKYSQ 180
Query: 488 XXXXXXXXXXXXSDKLKXXXXXXXXXXXXXXKLEKTIDDLEEKLAQAKEENVGLHQTLDQ 667
SDKLK KLEK+IDDLEEK+A AKEEN+ +HQ LDQ
Sbjct: 181 KEDKYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEEKVAHAKEENLSMHQMLDQ 240
Query: 668 TLNELN 685
TL ELN
Sbjct: 241 TLLELN 246
>ref|XP_865805.1| PREDICTED: similar to tropomyosin 3 isoform 2 isoform 17 [Canis
familiaris]
Length = 248
Score = 166 bits (421), Expect = 2e-41
Identities = 104/246 (42%), Positives = 123/246 (50%), Gaps = 36/246 (14%)
Frame = +2
Query: 56 MAGLNSLEAVKRKIXXXXXXXXXXXXXXXGLQRELDGERERREKAEGDVAALNRRIQLVE 235
MAG+ ++EAVKRKI LQRE++GER RE+AE +VA+LNRRIQLVE
Sbjct: 1 MAGITTIEAVKRKIQVLQQQADDAEERAERLQREVEGERRAREQAEAEVASLNRRIQLVE 60
Query: 236 EELDRAQERXXXXXXXXXXXXXXXXXXXRGMKVIENRAMKDEEKMEIQ------------ 379
EELDRAQER RGMKVIENRA+KDEEKME+Q
Sbjct: 61 EELDRAQERLATALQKLEEAEKAADESERGMKVIENRALKDEEKMELQEIQLKEAKHIAE 120
Query: 380 ------------------------ERAEVSELKCGDLEEELKNVTNNLXXXXXXXXXXXX 487
ERAE++E KC +LEEELKNVTNNL
Sbjct: 121 EADRKYEEVARKLVIIEGDLERTEERAELAESKCSELEEELKNVTNNLKSLEAQAEKYSQ 180
Query: 488 XXXXXXXXXXXXSDKLKXXXXXXXXXXXXXXKLEKTIDDLEEKLAQAKEENVGLHQTLDQ 667
+DKLK KLEKTIDDLE+KL KEE++ + LDQ
Sbjct: 181 KEDKYEEEIKILTDKLKEAETRAEFAERSVAKLEKTIDDLEDKLKCTKEEHLCTQRMLDQ 240
Query: 668 TLNELN 685
TL +LN
Sbjct: 241 TLLDLN 246
>ref|XP_865093.1| PREDICTED: similar to tropomyosin 1 alpha chain isoform 4 isoform
16 [Canis familiaris]
Length = 248
Score = 160 bits (405), Expect = 2e-39
Identities = 105/246 (42%), Positives = 119/246 (48%), Gaps = 36/246 (14%)
Frame = +2
Query: 56 MAGLNSLEAVKRKIXXXXXXXXXXXXXXXGLQRELDGERERREKAEGDVAALNRRIQLVE 235
MAG +SLEAV+RKI LQRELD ER+ RE AE DVA+LNRRIQLVE
Sbjct: 1 MAGSSSLEAVRRKIRSLQEQADAAEERAGSLQRELDYERKLRETAEADVASLNRRIQLVE 60
Query: 236 EELDRAQERXXXXXXXXXXXXXXXXXXXRGMKVIENRAMKDEEKMEIQ------------ 379
EELDRAQER RGMKVIE+RA KDEEKMEIQ
Sbjct: 61 EELDRAQERLATALQKLEEAEKAADESERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAE 120
Query: 380 ------------------------ERAEVSELKCGDLEEELKNVTNNLXXXXXXXXXXXX 487
ERAE+SE + LEE+L+ + L
Sbjct: 121 DADRKYEEVARKLVIIESDLERAEERAELSESQVRQLEEQLRIMDQTLKALMAAEDKYSQ 180
Query: 488 XXXXXXXXXXXXSDKLKXXXXXXXXXXXXXXKLEKTIDDLEEKLAQAKEENVGLHQTLDQ 667
SDKLK KLEK+IDDLEEK+A AKEEN+ +HQ LDQ
Sbjct: 181 KEDKYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEEKVAHAKEENLSMHQMLDQ 240
Query: 668 TLNELN 685
TL ELN
Sbjct: 241 TLLELN 246
>ref|XP_865836.1| PREDICTED: similar to tropomyosin 3, gamma isoform 19 [Canis
familiaris]
Length = 248
Score = 158 bits (399), Expect = 9e-39
Identities = 99/248 (39%), Positives = 120/248 (48%), Gaps = 36/248 (14%)
Frame = +2
Query: 56 MAGLNSLEAVKRKIXXXXXXXXXXXXXXXGLQRELDGERERREKAEGDVAALNRRIQLVE 235
MAG+ ++EAVKRKI LQRE++GER RE+AE +VA+LNRRIQLVE
Sbjct: 1 MAGITTIEAVKRKIQVLQQQADDAEERAERLQREVEGERRAREQAEAEVASLNRRIQLVE 60
Query: 236 EELDRAQERXXXXXXXXXXXXXXXXXXXRGMKVIENRAMKDEEKMEIQ------------ 379
EELDRAQER RGMKVIENRA+KDEEKME+Q
Sbjct: 61 EELDRAQERLATALQKLEEAEKAADESERGMKVIENRALKDEEKMELQEIQLKEAKHIAE 120
Query: 380 ------------------------ERAEVSELKCGDLEEELKNVTNNLXXXXXXXXXXXX 487
ERAE++E KC +LEEELKNVTNNL
Sbjct: 121 EADRKYEEVARKLVIIEGDLERTEERAELAESKCSELEEELKNVTNNLKSLEAQAEKYSQ 180
Query: 488 XXXXXXXXXXXXSDKLKXXXXXXXXXXXXXXKLEKTIDDLEEKLAQAKEENVGLHQTLDQ 667
+DKLK KLEKTIDDLE++L K + + + LD
Sbjct: 181 KEDKYEEEIKILTDKLKEAETRAEFAERSVAKLEKTIDDLEDELYAQKLKYKAISEELDH 240
Query: 668 TLNELNCI 691
LN++ I
Sbjct: 241 ALNDMTSI 248
>ref|XP_864963.1| PREDICTED: similar to tropomyosin 1 alpha chain isoform 6 isoform 9
[Canis familiaris]
Length = 245
Score = 156 bits (394), Expect = 3e-38
Identities = 104/244 (42%), Positives = 115/244 (47%), Gaps = 36/244 (14%)
Frame = +2
Query: 56 MAGLNSLEAVKRKIXXXXXXXXXXXXXXXGLQRELDGERERREKAEGDVAALNRRIQLVE 235
MAG +SLEAV+RKI LQRELD ER+ RE AE DVA+LNRRIQLVE
Sbjct: 1 MAGSSSLEAVRRKIRSLQEQADAAEERAGSLQRELDYERKLRETAEADVASLNRRIQLVE 60
Query: 236 EELDRAQERXXXXXXXXXXXXXXXXXXXRGMKVIENRAMKDEEKMEIQ------------ 379
EELDRAQER RGMKVIE+RA KDEEKMEIQ
Sbjct: 61 EELDRAQERLATALQKLEEAEKAADESERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAE 120
Query: 380 ------------------------ERAEVSELKCGDLEEELKNVTNNLXXXXXXXXXXXX 487
ERAE+SE KC +LEEELK VTNNL
Sbjct: 121 DADRKYEEVARKLVIIESDLERAEERAELSESKCAELEEELKTVTNNLKSLEAQAEKYSQ 180
Query: 488 XXXXXXXXXXXXSDKLKXXXXXXXXXXXXXXKLEKTIDDLEEKLAQAKEENVGLHQTLDQ 667
SDKLK KLEK+IDDLE++L Q E+N L L
Sbjct: 181 KEDKYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEDQLYQQLEQNRRLTNQLKL 240
Query: 668 TLNE 679
LNE
Sbjct: 241 ALNE 244
>ref|XP_865128.1| PREDICTED: similar to tropomyosin 1 alpha chain isoform 6 isoform
18 [Canis familiaris]
Length = 248
Score = 155 bits (393), Expect = 4e-38
Identities = 102/248 (41%), Positives = 117/248 (47%), Gaps = 36/248 (14%)
Frame = +2
Query: 56 MAGLNSLEAVKRKIXXXXXXXXXXXXXXXGLQRELDGERERREKAEGDVAALNRRIQLVE 235
MAG +SLEAV+RKI LQRELD ER+ RE AE DVA+LNRRIQLVE
Sbjct: 1 MAGSSSLEAVRRKIRSLQEQADAAEERAGSLQRELDYERKLRETAEADVASLNRRIQLVE 60
Query: 236 EELDRAQERXXXXXXXXXXXXXXXXXXXRGMKVIENRAMKDEEKMEIQ------------ 379
EELDRAQER RGMKVIE+RA KDEEKMEIQ
Sbjct: 61 EELDRAQERLATALQKLEEAEKAADESERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAE 120
Query: 380 ------------------------ERAEVSELKCGDLEEELKNVTNNLXXXXXXXXXXXX 487
ERAE+SE KC +LEEELK VTNNL
Sbjct: 121 DADRKYEEVARKLVIIESDLERAEERAELSESKCAELEEELKTVTNNLKSLEAQAEKYSQ 180
Query: 488 XXXXXXXXXXXXSDKLKXXXXXXXXXXXXXXKLEKTIDDLEEKLAQAKEENVGLHQTLDQ 667
SDKLK KLEK+IDDLE++L K + + + LD
Sbjct: 181 KEDKYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEDELYAQKLKYKAISEELDH 240
Query: 668 TLNELNCI 691
LN++ I
Sbjct: 241 ALNDMTSI 248
>ref|XP_865053.1| PREDICTED: similar to tropomyosin 1 alpha chain isoform 6 isoform
14 [Canis familiaris]
Length = 248
Score = 154 bits (390), Expect = 1e-37
Identities = 101/245 (41%), Positives = 116/245 (47%), Gaps = 36/245 (14%)
Frame = +2
Query: 56 MAGLNSLEAVKRKIXXXXXXXXXXXXXXXGLQRELDGERERREKAEGDVAALNRRIQLVE 235
MAG +SLEAV+RKI LQRELD ER+ RE AE DVA+LNRRIQLVE
Sbjct: 1 MAGSSSLEAVRRKIRSLQEQADAAEERAGSLQRELDYERKLRETAEADVASLNRRIQLVE 60
Query: 236 EELDRAQERXXXXXXXXXXXXXXXXXXXRGMKVIENRAMKDEEKMEIQ------------ 379
EELDRAQER RGMKVIE+RA KDEEKMEIQ
Sbjct: 61 EELDRAQERLATALQKLEEAEKAADESERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAE 120
Query: 380 ------------------------ERAEVSELKCGDLEEELKNVTNNLXXXXXXXXXXXX 487
ERAE+SE KC +LEEELK VTNNL
Sbjct: 121 DADRKYEEVARKLVIIESDLERAEERAELSESKCAELEEELKTVTNNLKSLEAQAEKYSQ 180
Query: 488 XXXXXXXXXXXXSDKLKXXXXXXXXXXXXXXKLEKTIDDLEEKLAQAKEENVGLHQTLDQ 667
SDKLK KLEK+IDDLE++L K + + + LD
Sbjct: 181 KEDKYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEDELYAQKLKYKAISEELDH 240
Query: 668 TLNEL 682
LN++
Sbjct: 241 ALNDM 245
>ref|XP_541810.2| PREDICTED: similar to tropomyosin 3 isoform 2 isoform 2 [Canis
familiaris]
Length = 248
Score = 150 bits (378), Expect = 2e-36
Identities = 94/246 (38%), Positives = 120/246 (48%), Gaps = 36/246 (14%)
Frame = +2
Query: 56 MAGLNSLEAVKRKIXXXXXXXXXXXXXXXGLQRELDGERERREKAEGDVAALNRRIQLVE 235
MAG+ ++EAVKRKI LQRE++GER RE+AE +VA+LNRRIQLVE
Sbjct: 1 MAGITTIEAVKRKIQVLQQQADDAEERAERLQREVEGERRAREQAEAEVASLNRRIQLVE 60
Query: 236 EELDRAQERXXXXXXXXXXXXXXXXXXXRGMKVIENRAMKDEEKMEIQ------------ 379
EELDRAQER RGMKVIENRA+KDEEKME+Q
Sbjct: 61 EELDRAQERLATALQKLEEAEKAADESERGMKVIENRALKDEEKMELQEIQLKEAKHIAE 120
Query: 380 ------------------------ERAEVSELKCGDLEEELKNVTNNLXXXXXXXXXXXX 487
ERAE++E +C +++E+++ + NL
Sbjct: 121 EADRKYEEVARKLVIIEGDLERTEERAELAESRCREMDEQIRLMDQNLKCLSAAEEKYSQ 180
Query: 488 XXXXXXXXXXXXSDKLKXXXXXXXXXXXXXXKLEKTIDDLEEKLAQAKEENVGLHQTLDQ 667
+DKLK KLEKTIDDLE+KL KEE++ + LDQ
Sbjct: 181 KEDKYEEEIKILTDKLKEAETRAEFAERSVAKLEKTIDDLEDKLKCTKEEHLCTQRMLDQ 240
Query: 668 TLNELN 685
TL +LN
Sbjct: 241 TLLDLN 246
>ref|XP_865919.1| PREDICTED: similar to tropomyosin 3 isoform 2 isoform 25 [Canis
familiaris]
Length = 248
Score = 150 bits (378), Expect = 2e-36
Identities = 94/246 (38%), Positives = 120/246 (48%), Gaps = 36/246 (14%)
Frame = +2
Query: 56 MAGLNSLEAVKRKIXXXXXXXXXXXXXXXGLQRELDGERERREKAEGDVAALNRRIQLVE 235
MAG+ ++EAVKRKI LQRE++GER RE+AE +VA+LNRRIQLVE
Sbjct: 1 MAGITTIEAVKRKIQVLQQQADDAEERAERLQREVEGERRAREQAEAEVASLNRRIQLVE 60
Query: 236 EELDRAQERXXXXXXXXXXXXXXXXXXXRGMKVIENRAMKDEEKMEIQ------------ 379
EELDRAQER RGMKVIENRA+KDEEKME+Q
Sbjct: 61 EELDRAQERLATALQKLEEAEKAADESERGMKVIENRALKDEEKMELQEIQLKEAKHIAE 120
Query: 380 ------------------------ERAEVSELKCGDLEEELKNVTNNLXXXXXXXXXXXX 487
ERAE++E +C +++E+++ + NL
Sbjct: 121 EADRKYEEVARKLVIIEGDLERTEERAELAESRCREMDEQIRLMDQNLKCLSAAEEKYSQ 180
Query: 488 XXXXXXXXXXXXSDKLKXXXXXXXXXXXXXXKLEKTIDDLEEKLAQAKEENVGLHQTLDQ 667
+DKLK KLEKTIDDLE+KL KEE++ + LDQ
Sbjct: 181 KEDKYEEEIKILTDKLKEAETRAEFAERSVAKLEKTIDDLEDKLKCTKEEHLCTQRMLDQ 240
Query: 668 TLNELN 685
TL +LN
Sbjct: 241 TLLDLN 246
>ref|XP_865731.1| PREDICTED: similar to tropomyosin 3 isoform 2 isoform 14 [Canis
familiaris]
Length = 248
Score = 150 bits (378), Expect = 2e-36
Identities = 94/246 (38%), Positives = 120/246 (48%), Gaps = 36/246 (14%)
Frame = +2
Query: 56 MAGLNSLEAVKRKIXXXXXXXXXXXXXXXGLQRELDGERERREKAEGDVAALNRRIQLVE 235
MAG+ ++EAVKRKI LQRE++GER RE+AE +VA+LNRRIQLVE
Sbjct: 1 MAGITTIEAVKRKIQVLQQQADDAEERAERLQREVEGERRAREQAEAEVASLNRRIQLVE 60
Query: 236 EELDRAQERXXXXXXXXXXXXXXXXXXXRGMKVIENRAMKDEEKMEIQ------------ 379
EELDRAQER RGMKVIENRA+KDEEKME+Q
Sbjct: 61 EELDRAQERLATALQKLEEAEKAADESERGMKVIENRALKDEEKMELQEIQLKEAKHIAE 120
Query: 380 ------------------------ERAEVSELKCGDLEEELKNVTNNLXXXXXXXXXXXX 487
ERAE++E +C +++E+++ + NL
Sbjct: 121 EADRKYEEVARKLVIIEGDLERTEERAELAESRCREMDEQIRLMDQNLKCLSAAEEKYSQ 180
Query: 488 XXXXXXXXXXXXSDKLKXXXXXXXXXXXXXXKLEKTIDDLEEKLAQAKEENVGLHQTLDQ 667
+DKLK KLEKTIDDLE+KL KEE++ + LDQ
Sbjct: 181 KEDKYEEEIKILTDKLKEAETRAEFAERSVAKLEKTIDDLEDKLKCTKEEHLCTQRMLDQ 240
Query: 668 TLNELN 685
TL +LN
Sbjct: 241 TLLDLN 246
Database: RefSeqCP
Posted date: Aug 1, 2006 9:25 PM
Number of letters in database: 19,266,565
Number of sequences in database: 33,732
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 26,026,751
Number of Sequences: 33732
Number of extensions: 506727
Number of successful extensions: 2668
Number of sequences better than 1.0e-05: 10
Number of HSP's better than 0.0 without gapping: 2117
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2580
length of database: 19,266,565
effective HSP length: 103
effective length of database: 15,792,169
effective search space used: 3600614532
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
Search to RefSeqMP
BLASTX 2.2.10 [Oct-19-2004]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20060611S-041563
(997 letters)
Database: RefSeqMP
45,328 sequences; 21,768,885 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001001491.1| tropomyosin 4 [Mus musculus] 228 1e-59
Alignment gi|NP_077745.2| tropomyosin 1, alpha [Mus musculus] 148 8e-36
Alignment gi|NP_033442.2| tropomyosin 2, beta [Mus musculus] 130 2e-30
Alignment gi|NP_071709.2| tropomyosin 3, gamma [Mus musculus] 120 3e-27
>ref|NP_001001491.1| tropomyosin 4 [Mus musculus]
Length = 248
Score = 228 bits (580), Expect = 1e-59
Identities = 136/248 (54%), Positives = 139/248 (56%), Gaps = 36/248 (14%)
Frame = +2
Query: 56 MAGLNSLEAVKRKIXXXXXXXXXXXXXXXGLQRELDGERERREKAEGDVAALNRRIQLVE 235
MAGLNSLEAVKRKI GLQRELDGERERREKAEGD AALNRRIQL+E
Sbjct: 1 MAGLNSLEAVKRKIQALQQQADDAEDRAQGLQRELDGERERREKAEGDAAALNRRIQLLE 60
Query: 236 EELDRAQERXXXXXXXXXXXXXXXXXXXRGMKVIENRAMKDEEKMEI------------- 376
EELDRAQE+ RGMKVIENRAMKDEEKMEI
Sbjct: 61 EELDRAQEQLATALQNLEEAEKAADESERGMKVIENRAMKDEEKMEILEMQLKEAKHITD 120
Query: 377 -----------------------QERAEVSELKCGDLEEELKNVTNNLXXXXXXXXXXXX 487
+ERAEVSELKCGDLEEELKNVTNNL
Sbjct: 121 EADRKYEEVARKLVILEGELKRAEERAEVSELKCGDLEEELKNVTNNLKSLEAASEKYSE 180
Query: 488 XXXXXXXXXXXXSDKLKXXXXXXXXXXXXXXKLEKTIDDLEEKLAQAKEENVGLHQTLDQ 667
SDKLK KLEKTIDDLEEKLAQAKEENVGLHQTLDQ
Sbjct: 181 KEDKYEEEIKLLSDKLKEAETRAEFAERTVSKLEKTIDDLEEKLAQAKEENVGLHQTLDQ 240
Query: 668 TLNELNCI 691
TLNELNCI
Sbjct: 241 TLNELNCI 248
>ref|NP_077745.2| tropomyosin 1, alpha [Mus musculus]
Length = 284
Score = 148 bits (374), Expect = 8e-36
Identities = 96/242 (39%), Positives = 114/242 (47%), Gaps = 36/242 (14%)
Frame = +2
Query: 68 NSLEAVKRKIXXXXXXXXXXXXXXXGLQRELDGERERREKAEGDVAALNRRIQLVEEELD 247
+ L ++++K+ Q +L+ ++ AE DVA+LNRRIQLVEEELD
Sbjct: 41 DELVSLQKKLKGTEDELDKYSEALKDAQEKLELAEKKATDAEADVASLNRRIQLVEEELD 100
Query: 248 RAQERXXXXXXXXXXXXXXXXXXXRGMKVIENRAMKDEEKMEIQ---------------- 379
RAQER RGMKVIE+RA KDEEKMEIQ
Sbjct: 101 RAQERLATALQKLEEAEKAADESERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAEDADR 160
Query: 380 --------------------ERAEVSELKCGDLEEELKNVTNNLXXXXXXXXXXXXXXXX 499
ERAE+SE KC +LEEELK VTNNL
Sbjct: 161 KYEEVARKLVIIESDLERAEERAELSEGKCAELEEELKTVTNNLKSLEAQAEKYSQKEDK 220
Query: 500 XXXXXXXXSDKLKXXXXXXXXXXXXXXKLEKTIDDLEEKLAQAKEENVGLHQTLDQTLNE 679
SDKLK KLEK+IDDLEEK+A AKEEN+ +HQ LDQTL E
Sbjct: 221 YEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEEKVAHAKEENLSMHQMLDQTLLE 280
Query: 680 LN 685
LN
Sbjct: 281 LN 282
>ref|NP_033442.2| tropomyosin 2, beta [Mus musculus]
Length = 284
Score = 130 bits (328), Expect = 2e-30
Identities = 85/241 (35%), Positives = 107/241 (44%), Gaps = 36/241 (14%)
Frame = +2
Query: 77 EAVKRKIXXXXXXXXXXXXXXXGLQRELDGERERREKAEGDVAALNRRIQLVEEELDRAQ 256
+A+++K+ Q +L+ ++ AE DVA+LNRRIQLVEEELDRAQ
Sbjct: 44 QALQKKLKGTEDEVEKYSESVKDAQEKLEQAEKKATDAEADVASLNRRIQLVEEELDRAQ 103
Query: 257 ERXXXXXXXXXXXXXXXXXXXRGMKVIENRAMKDEEKMEIQE------------------ 382
ER RGMKVIENRAMKDEEKME+QE
Sbjct: 104 ERLATALQKLEEAEKAADESERGMKVIENRAMKDEEKMELQEMQLKEAKHIAEDSDRKYE 163
Query: 383 ------------------RAEVSELKCGDLEEELKNVTNNLXXXXXXXXXXXXXXXXXXX 508
RAEV+E KCGDLEEELK VTNNL
Sbjct: 164 EVARKLVILEGELERSEERAEVAESKCGDLEEELKIVTNNLKSLEAQADKYSTKEDKYEE 223
Query: 509 XXXXXSDKLKXXXXXXXXXXXXXXKLEKTIDDLEEKLAQAKEENVGLHQTLDQTLNELNC 688
+KLK KLEKTIDDLE+++ K + + + LD LN++
Sbjct: 224 EIKLLEEKLKEAETRAEFAERSVAKLEKTIDDLEDEVYAQKMKYKAISEELDNALNDITS 283
Query: 689 I 691
+
Sbjct: 284 L 284
>ref|NP_071709.2| tropomyosin 3, gamma [Mus musculus]
Length = 284
Score = 120 bits (300), Expect = 3e-27
Identities = 79/242 (32%), Positives = 108/242 (44%), Gaps = 36/242 (14%)
Frame = +2
Query: 68 NSLEAVKRKIXXXXXXXXXXXXXXXGLQRELDGERERREKAEGDVAALNRRIQLVEEELD 247
+ L +++K+ Q +L+ ++ AE +VA+LNRRIQLVEEELD
Sbjct: 41 DELATMQKKLKGTEDELDKYSEALKDAQEKLELAEKKAADAEAEVASLNRRIQLVEEELD 100
Query: 248 RAQERXXXXXXXXXXXXXXXXXXXRGMKVIENRAMKDEEKMEIQ---------------- 379
RAQER RGMKVIENRA+KDEEKME+Q
Sbjct: 101 RAQERLATALQKLEEAEKAADESERGMKVIENRALKDEEKMELQEIQLKEAKHIAEEADR 160
Query: 380 --------------------ERAEVSELKCGDLEEELKNVTNNLXXXXXXXXXXXXXXXX 499
ERAE++E +C +++E+++ + NL
Sbjct: 161 KYEEVARKLVIIEGDLERTEERAELAESRCREMDEQIRLMDQNLKCLSAAEEKYSQKEDK 220
Query: 500 XXXXXXXXSDKLKXXXXXXXXXXXXXXKLEKTIDDLEEKLAQAKEENVGLHQTLDQTLNE 679
+DKLK KLEKTIDDLE+KL KEE++ + LDQTL +
Sbjct: 221 YEEEIKILTDKLKEAETRAEFAERSVAKLEKTIDDLEDKLKCTKEEHLCTQRMLDQTLLD 280
Query: 680 LN 685
LN
Sbjct: 281 LN 282
Database: RefSeqMP
Posted date: Aug 2, 2006 12:58 AM
Number of letters in database: 21,768,885
Number of sequences in database: 45,328
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 29,870,866
Number of Sequences: 45328
Number of extensions: 584294
Number of successful extensions: 2949
Number of sequences better than 1.0e-05: 4
Number of HSP's better than 0.0 without gapping: 2347
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2920
length of database: 21,768,885
effective HSP length: 104
effective length of database: 17,054,773
effective search space used: 3871433471
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)