BLASTX 2.2.10 [Oct-19-2004]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20060611S-043237
(1116 letters)
Database: RefSeqSP
1040 sequences; 434,620 total letters
Searching...done
***** No hits found ******
Database: RefSeqSP
Posted date: Aug 1, 2006 7:14 PM
Number of letters in database: 434,620
Number of sequences in database: 1040
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 966,729
Number of Sequences: 1040
Number of extensions: 22240
Number of successful extensions: 53
Number of sequences better than 1.0e-05: 0
Number of HSP's better than 0.0 without gapping: 49
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 53
length of database: 434,620
effective HSP length: 78
effective length of database: 353,500
effective search space used: 103575500
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
Search to RefSeqBP
BLASTX 2.2.10 [Oct-19-2004]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20060611S-043237
(1116 letters)
Database: RefSeqBP
33,508 sequences; 16,112,626 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_591232.2| PREDICTED: similar to Recombining binding prote... 112 5e-25
>ref|XP_591232.2| PREDICTED: similar to Recombining binding protein suppressor of
hairless-like protein (Transcription factor RBP-L) [Bos
taurus]
Length = 521
Score = 112 bits (280), Expect = 5e-25
Identities = 59/132 (44%), Positives = 79/132 (59%), Gaps = 7/132 (5%)
Frame = +3
Query: 228 KLHRSHMGMKKGFFCPPPCVYLMGSGWKKKKEQMERDGCSEQESQPCAFIGI---GNSDQ 398
K+ + G +K FFCPPPCVYL G GW+ K + + C ++G+ S
Sbjct: 78 KVAQKSYGNEKRFFCPPPCVYLAGPGWRVKPVPGQAHQAGQTGPLVCGYMGLDGASGSAA 137
Query: 399 EMQQLNLE----GKNYCTAKTLYISDSDKRKHFMLSVKMFYGNSDDIGVFLSKRIKVISK 566
E Q+LN E + + AKTLYISD+DKRKHF L +++ ++G F S+ IKVISK
Sbjct: 138 ETQKLNFEEQPDSREFSCAKTLYISDADKRKHFRLVLRLMLRGGRELGTFHSRLIKVISK 197
Query: 567 PSKKKQSLKNAD 602
PS+KKQSLKN D
Sbjct: 198 PSQKKQSLKNTD 209
Score = 57.8 bits (138), Expect = 2e-08
Identities = 27/42 (64%), Positives = 33/42 (78%)
Frame = +2
Query: 149 PKRLTREAMRNYLKERGDQTVLILHAKVAQKSYGNEKRFFLP 274
P + RE +R L+++ +QTV ILHAKVAQKSYGNEKRFF P
Sbjct: 52 PSAVLREGVRRCLQQQCEQTVWILHAKVAQKSYGNEKRFFCP 93
Database: RefSeqBP
Posted date: Aug 1, 2006 7:14 PM
Number of letters in database: 16,112,626
Number of sequences in database: 33,508
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 34,992,601
Number of Sequences: 33508
Number of extensions: 795231
Number of successful extensions: 1761
Number of sequences better than 1.0e-05: 1
Number of HSP's better than 0.0 without gapping: 1675
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1760
length of database: 16,112,626
effective HSP length: 103
effective length of database: 12,661,302
effective search space used: 3393228936
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
Search to RefSeqHP
BLASTX 2.2.10 [Oct-19-2004]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20060611S-043237
(1116 letters)
Database: RefSeqHP
39,411 sequences; 17,774,539 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_976029.1| recombining binding protein suppressor of hairl... 242 4e-64
Alignment gi|NP_976028.1| recombining binding protein suppressor of hairl... 242 4e-64
Alignment gi|NP_005340.2| recombining binding protein suppressor of hairl... 242 4e-64
Alignment gi|NP_056958.3| recombining binding protein suppressor of hairl... 242 4e-64
Alignment gi|NP_055091.2| recombining binding protein L [Homo sapiens] 115 9e-26
>ref|NP_976029.1| recombining binding protein suppressor of hairless isoform 4 [Homo
sapiens]
Length = 486
Score = 242 bits (618), Expect = 4e-64
Identities = 117/130 (90%), Positives = 120/130 (92%)
Frame = +3
Query: 213 LFFMQKLHRSHMGMKKGFFCPPPCVYLMGSGWKKKKEQMERDGCSEQESQPCAFIGIGNS 392
L K+ + G +K FFCPPPCVYLMGSGWKKKKEQMERDGCSEQESQPCAFIGIGNS
Sbjct: 35 LILHAKVAQKSYGNEKRFFCPPPCVYLMGSGWKKKKEQMERDGCSEQESQPCAFIGIGNS 94
Query: 393 DQEMQQLNLEGKNYCTAKTLYISDSDKRKHFMLSVKMFYGNSDDIGVFLSKRIKVISKPS 572
DQEMQQLNLEGKNYCTAKTLYISDSDKRKHFMLSVKMFYGNSDDIGVFLSKRIKVISKPS
Sbjct: 95 DQEMQQLNLEGKNYCTAKTLYISDSDKRKHFMLSVKMFYGNSDDIGVFLSKRIKVISKPS 154
Query: 573 KKKQSLKNAD 602
KKKQSLKNAD
Sbjct: 155 KKKQSLKNAD 164
Score = 106 bits (264), Expect = 4e-23
Identities = 52/65 (80%), Positives = 54/65 (83%)
Frame = +2
Query: 125 RKFGERPPPKRLTREAMRNYLKERGDQTVLILHAKVAQKSYGNEKRFFLPSSLCVSYGQW 304
RKFGERPPPKRLTREAMRNYLKERGDQTVLILHAKVAQKSYGNEKRFF P G
Sbjct: 6 RKFGERPPPKRLTREAMRNYLKERGDQTVLILHAKVAQKSYGNEKRFFCPPPCVYLMGSG 65
Query: 305 MEEKK 319
++KK
Sbjct: 66 WKKKK 70
>ref|NP_976028.1| recombining binding protein suppressor of hairless isoform 3 [Homo
sapiens]
Length = 485
Score = 242 bits (618), Expect = 4e-64
Identities = 117/130 (90%), Positives = 120/130 (92%)
Frame = +3
Query: 213 LFFMQKLHRSHMGMKKGFFCPPPCVYLMGSGWKKKKEQMERDGCSEQESQPCAFIGIGNS 392
L K+ + G +K FFCPPPCVYLMGSGWKKKKEQMERDGCSEQESQPCAFIGIGNS
Sbjct: 34 LILHAKVAQKSYGNEKRFFCPPPCVYLMGSGWKKKKEQMERDGCSEQESQPCAFIGIGNS 93
Query: 393 DQEMQQLNLEGKNYCTAKTLYISDSDKRKHFMLSVKMFYGNSDDIGVFLSKRIKVISKPS 572
DQEMQQLNLEGKNYCTAKTLYISDSDKRKHFMLSVKMFYGNSDDIGVFLSKRIKVISKPS
Sbjct: 94 DQEMQQLNLEGKNYCTAKTLYISDSDKRKHFMLSVKMFYGNSDDIGVFLSKRIKVISKPS 153
Query: 573 KKKQSLKNAD 602
KKKQSLKNAD
Sbjct: 154 KKKQSLKNAD 163
Score = 106 bits (264), Expect = 4e-23
Identities = 52/65 (80%), Positives = 54/65 (83%)
Frame = +2
Query: 125 RKFGERPPPKRLTREAMRNYLKERGDQTVLILHAKVAQKSYGNEKRFFLPSSLCVSYGQW 304
RKFGERPPPKRLTREAMRNYLKERGDQTVLILHAKVAQKSYGNEKRFF P G
Sbjct: 5 RKFGERPPPKRLTREAMRNYLKERGDQTVLILHAKVAQKSYGNEKRFFCPPPCVYLMGSG 64
Query: 305 MEEKK 319
++KK
Sbjct: 65 WKKKK 69
>ref|NP_005340.2| recombining binding protein suppressor of hairless isoform 1 [Homo
sapiens]
Length = 500
Score = 242 bits (618), Expect = 4e-64
Identities = 117/130 (90%), Positives = 120/130 (92%)
Frame = +3
Query: 213 LFFMQKLHRSHMGMKKGFFCPPPCVYLMGSGWKKKKEQMERDGCSEQESQPCAFIGIGNS 392
L K+ + G +K FFCPPPCVYLMGSGWKKKKEQMERDGCSEQESQPCAFIGIGNS
Sbjct: 49 LILHAKVAQKSYGNEKRFFCPPPCVYLMGSGWKKKKEQMERDGCSEQESQPCAFIGIGNS 108
Query: 393 DQEMQQLNLEGKNYCTAKTLYISDSDKRKHFMLSVKMFYGNSDDIGVFLSKRIKVISKPS 572
DQEMQQLNLEGKNYCTAKTLYISDSDKRKHFMLSVKMFYGNSDDIGVFLSKRIKVISKPS
Sbjct: 109 DQEMQQLNLEGKNYCTAKTLYISDSDKRKHFMLSVKMFYGNSDDIGVFLSKRIKVISKPS 168
Query: 573 KKKQSLKNAD 602
KKKQSLKNAD
Sbjct: 169 KKKQSLKNAD 178
Score = 104 bits (259), Expect = 2e-22
Identities = 51/64 (79%), Positives = 53/64 (82%)
Frame = +2
Query: 128 KFGERPPPKRLTREAMRNYLKERGDQTVLILHAKVAQKSYGNEKRFFLPSSLCVSYGQWM 307
KFGERPPPKRLTREAMRNYLKERGDQTVLILHAKVAQKSYGNEKRFF P G
Sbjct: 21 KFGERPPPKRLTREAMRNYLKERGDQTVLILHAKVAQKSYGNEKRFFCPPPCVYLMGSGW 80
Query: 308 EEKK 319
++KK
Sbjct: 81 KKKK 84
>ref|NP_056958.3| recombining binding protein suppressor of hairless isoform 2 [Homo
sapiens]
Length = 487
Score = 242 bits (618), Expect = 4e-64
Identities = 117/130 (90%), Positives = 120/130 (92%)
Frame = +3
Query: 213 LFFMQKLHRSHMGMKKGFFCPPPCVYLMGSGWKKKKEQMERDGCSEQESQPCAFIGIGNS 392
L K+ + G +K FFCPPPCVYLMGSGWKKKKEQMERDGCSEQESQPCAFIGIGNS
Sbjct: 36 LILHAKVAQKSYGNEKRFFCPPPCVYLMGSGWKKKKEQMERDGCSEQESQPCAFIGIGNS 95
Query: 393 DQEMQQLNLEGKNYCTAKTLYISDSDKRKHFMLSVKMFYGNSDDIGVFLSKRIKVISKPS 572
DQEMQQLNLEGKNYCTAKTLYISDSDKRKHFMLSVKMFYGNSDDIGVFLSKRIKVISKPS
Sbjct: 96 DQEMQQLNLEGKNYCTAKTLYISDSDKRKHFMLSVKMFYGNSDDIGVFLSKRIKVISKPS 155
Query: 573 KKKQSLKNAD 602
KKKQSLKNAD
Sbjct: 156 KKKQSLKNAD 165
Score = 106 bits (264), Expect = 4e-23
Identities = 52/69 (75%), Positives = 55/69 (79%)
Frame = +2
Query: 113 PALLRKFGERPPPKRLTREAMRNYLKERGDQTVLILHAKVAQKSYGNEKRFFLPSSLCVS 292
P + KFGERPPPKRLTREAMRNYLKERGDQTVLILHAKVAQKSYGNEKRFF P
Sbjct: 3 PVVTGKFGERPPPKRLTREAMRNYLKERGDQTVLILHAKVAQKSYGNEKRFFCPPPCVYL 62
Query: 293 YGQWMEEKK 319
G ++KK
Sbjct: 63 MGSGWKKKK 71
>ref|NP_055091.2| recombining binding protein L [Homo sapiens]
Length = 517
Score = 115 bits (287), Expect = 9e-26
Identities = 61/132 (46%), Positives = 81/132 (61%), Gaps = 7/132 (5%)
Frame = +3
Query: 228 KLHRSHMGMKKGFFCPPPCVYLMGSGWKKKKEQMERDGCSEQESQPCAFIGIGN---SDQ 398
K+ + G +K FFCPPPCVYL G GW+ K Q + E C ++G+ + S
Sbjct: 75 KVAQKSYGNEKRFFCPPPCVYLSGPGWRVKPGQDQAHQAGETGPTVCGYMGLDSASGSAT 134
Query: 399 EMQQLNLE----GKNYCTAKTLYISDSDKRKHFMLSVKMFYGNSDDIGVFLSKRIKVISK 566
E Q+LN E + + AKTLYISD+DKRKHF L +++ ++G F S+ IKVISK
Sbjct: 135 ETQKLNFEQQPDSREFGCAKTLYISDADKRKHFRLVLRLVLRGGRELGTFHSRLIKVISK 194
Query: 567 PSKKKQSLKNAD 602
PS+KKQSLKN D
Sbjct: 195 PSQKKQSLKNTD 206
Score = 53.9 bits (128), Expect = 2e-07
Identities = 26/44 (59%), Positives = 32/44 (72%)
Frame = +2
Query: 143 PPPKRLTREAMRNYLKERGDQTVLILHAKVAQKSYGNEKRFFLP 274
P + R +R L+++ +QTV ILHAKVAQKSYGNEKRFF P
Sbjct: 47 PEHTTILRGGVRRCLQQQCEQTVRILHAKVAQKSYGNEKRFFCP 90
Database: RefSeqHP
Posted date: Aug 2, 2006 12:57 AM
Number of letters in database: 17,774,539
Number of sequences in database: 39,411
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 39,120,820
Number of Sequences: 39411
Number of extensions: 888155
Number of successful extensions: 1949
Number of sequences better than 1.0e-05: 5
Number of HSP's better than 0.0 without gapping: 1836
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1948
length of database: 17,774,539
effective HSP length: 103
effective length of database: 13,715,206
effective search space used: 3675675208
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
Search to RefSeqCP
BLASTX 2.2.10 [Oct-19-2004]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20060611S-043237
(1116 letters)
Database: RefSeqCP
33,732 sequences; 19,266,565 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_863791.1| PREDICTED: similar to recombining binding prote... 246 3e-65
Alignment gi|XP_863769.1| PREDICTED: similar to recombining binding prote... 242 4e-64
Alignment gi|XP_536269.2| PREDICTED: similar to recombining binding prote... 242 4e-64
Alignment gi|XP_543016.2| PREDICTED: similar to recombining binding prote... 115 6e-26
Alignment gi|XP_863700.1| PREDICTED: similar to recombining binding prote... 97 4e-20
>ref|XP_863791.1| PREDICTED: similar to recombining binding protein suppressor of
hairless isoform 4 isoform 6 [Canis familiaris]
Length = 489
Score = 246 bits (628), Expect = 3e-65
Identities = 118/133 (88%), Positives = 122/133 (91%)
Frame = +3
Query: 213 LFFMQKLHRSHMGMKKGFFCPPPCVYLMGSGWKKKKEQMERDGCSEQESQPCAFIGIGNS 392
L K+ + G +K FFCPPPCVYLMGSGWKKKKEQMERDGCSEQESQPCAFIGIGNS
Sbjct: 35 LILHAKVAQKSYGNEKRFFCPPPCVYLMGSGWKKKKEQMERDGCSEQESQPCAFIGIGNS 94
Query: 393 DQEMQQLNLEGKNYCTAKTLYISDSDKRKHFMLSVKMFYGNSDDIGVFLSKRIKVISKPS 572
DQEMQQLNLEGKNYCTAKTLYISDSDKRKHFMLSVKMFYGNSDDIGVFLSKRIKVISKPS
Sbjct: 95 DQEMQQLNLEGKNYCTAKTLYISDSDKRKHFMLSVKMFYGNSDDIGVFLSKRIKVISKPS 154
Query: 573 KKKQSLKNADCMY 611
KKKQSLKNADC +
Sbjct: 155 KKKQSLKNADCEF 167
Score = 106 bits (264), Expect = 5e-23
Identities = 52/65 (80%), Positives = 54/65 (83%)
Frame = +2
Query: 125 RKFGERPPPKRLTREAMRNYLKERGDQTVLILHAKVAQKSYGNEKRFFLPSSLCVSYGQW 304
RKFGERPPPKRLTREAMRNYLKERGDQTVLILHAKVAQKSYGNEKRFF P G
Sbjct: 6 RKFGERPPPKRLTREAMRNYLKERGDQTVLILHAKVAQKSYGNEKRFFCPPPCVYLMGSG 65
Query: 305 MEEKK 319
++KK
Sbjct: 66 WKKKK 70
>ref|XP_863769.1| PREDICTED: similar to recombining binding protein suppressor of
hairless isoform 4 isoform 5 [Canis familiaris]
Length = 381
Score = 242 bits (618), Expect = 4e-64
Identities = 117/130 (90%), Positives = 120/130 (92%)
Frame = +3
Query: 213 LFFMQKLHRSHMGMKKGFFCPPPCVYLMGSGWKKKKEQMERDGCSEQESQPCAFIGIGNS 392
L K+ + G +K FFCPPPCVYLMGSGWKKKKEQMERDGCSEQESQPCAFIGIGNS
Sbjct: 35 LILHAKVAQKSYGNEKRFFCPPPCVYLMGSGWKKKKEQMERDGCSEQESQPCAFIGIGNS 94
Query: 393 DQEMQQLNLEGKNYCTAKTLYISDSDKRKHFMLSVKMFYGNSDDIGVFLSKRIKVISKPS 572
DQEMQQLNLEGKNYCTAKTLYISDSDKRKHFMLSVKMFYGNSDDIGVFLSKRIKVISKPS
Sbjct: 95 DQEMQQLNLEGKNYCTAKTLYISDSDKRKHFMLSVKMFYGNSDDIGVFLSKRIKVISKPS 154
Query: 573 KKKQSLKNAD 602
KKKQSLKNAD
Sbjct: 155 KKKQSLKNAD 164
Score = 106 bits (264), Expect = 5e-23
Identities = 52/65 (80%), Positives = 54/65 (83%)
Frame = +2
Query: 125 RKFGERPPPKRLTREAMRNYLKERGDQTVLILHAKVAQKSYGNEKRFFLPSSLCVSYGQW 304
RKFGERPPPKRLTREAMRNYLKERGDQTVLILHAKVAQKSYGNEKRFF P G
Sbjct: 6 RKFGERPPPKRLTREAMRNYLKERGDQTVLILHAKVAQKSYGNEKRFFCPPPCVYLMGSG 65
Query: 305 MEEKK 319
++KK
Sbjct: 66 WKKKK 70
>ref|XP_536269.2| PREDICTED: similar to recombining binding protein suppressor of
hairless isoform 4 isoform 1 [Canis familiaris]
Length = 486
Score = 242 bits (618), Expect = 4e-64
Identities = 117/130 (90%), Positives = 120/130 (92%)
Frame = +3
Query: 213 LFFMQKLHRSHMGMKKGFFCPPPCVYLMGSGWKKKKEQMERDGCSEQESQPCAFIGIGNS 392
L K+ + G +K FFCPPPCVYLMGSGWKKKKEQMERDGCSEQESQPCAFIGIGNS
Sbjct: 35 LILHAKVAQKSYGNEKRFFCPPPCVYLMGSGWKKKKEQMERDGCSEQESQPCAFIGIGNS 94
Query: 393 DQEMQQLNLEGKNYCTAKTLYISDSDKRKHFMLSVKMFYGNSDDIGVFLSKRIKVISKPS 572
DQEMQQLNLEGKNYCTAKTLYISDSDKRKHFMLSVKMFYGNSDDIGVFLSKRIKVISKPS
Sbjct: 95 DQEMQQLNLEGKNYCTAKTLYISDSDKRKHFMLSVKMFYGNSDDIGVFLSKRIKVISKPS 154
Query: 573 KKKQSLKNAD 602
KKKQSLKNAD
Sbjct: 155 KKKQSLKNAD 164
Score = 106 bits (264), Expect = 5e-23
Identities = 52/65 (80%), Positives = 54/65 (83%)
Frame = +2
Query: 125 RKFGERPPPKRLTREAMRNYLKERGDQTVLILHAKVAQKSYGNEKRFFLPSSLCVSYGQW 304
RKFGERPPPKRLTREAMRNYLKERGDQTVLILHAKVAQKSYGNEKRFF P G
Sbjct: 6 RKFGERPPPKRLTREAMRNYLKERGDQTVLILHAKVAQKSYGNEKRFFCPPPCVYLMGSG 65
Query: 305 MEEKK 319
++KK
Sbjct: 66 WKKKK 70
>ref|XP_543016.2| PREDICTED: similar to recombining binding protein L [Canis
familiaris]
Length = 517
Score = 115 bits (289), Expect = 6e-26
Identities = 61/132 (46%), Positives = 81/132 (61%), Gaps = 7/132 (5%)
Frame = +3
Query: 228 KLHRSHMGMKKGFFCPPPCVYLMGSGWKKKKEQMERDGCSEQESQPCAFIGI---GNSDQ 398
K+ + G +K FFCPPPCVYL G GW+ K Q + E C ++G+ S
Sbjct: 75 KVAQKSYGNEKRFFCPPPCVYLAGPGWRVKPVQGQGHQAGETGPTVCGYMGLDGASGSAA 134
Query: 399 EMQQLNLE----GKNYCTAKTLYISDSDKRKHFMLSVKMFYGNSDDIGVFLSKRIKVISK 566
E Q+LN E + + AKTLYISD+DKRKHF L +++ + ++G F S+ IKVISK
Sbjct: 135 ETQKLNFEEQPDSREFGCAKTLYISDADKRKHFRLVLRLVHRGGRELGTFHSRLIKVISK 194
Query: 567 PSKKKQSLKNAD 602
PS+KKQSLKN D
Sbjct: 195 PSQKKQSLKNTD 206
Score = 55.8 bits (133), Expect = 7e-08
Identities = 26/37 (70%), Positives = 31/37 (83%)
Frame = +2
Query: 164 REAMRNYLKERGDQTVLILHAKVAQKSYGNEKRFFLP 274
RE +R L+++ +QTV ILHAKVAQKSYGNEKRFF P
Sbjct: 54 REGVRQCLRQQCEQTVRILHAKVAQKSYGNEKRFFCP 90
>ref|XP_863700.1| PREDICTED: similar to recombining binding protein suppressor of
hairless isoform 4 isoform 2 [Canis familiaris]
Length = 55
Score = 96.7 bits (239), Expect = 4e-20
Identities = 46/46 (100%), Positives = 46/46 (100%)
Frame = +2
Query: 125 RKFGERPPPKRLTREAMRNYLKERGDQTVLILHAKVAQKSYGNEKR 262
RKFGERPPPKRLTREAMRNYLKERGDQTVLILHAKVAQKSYGNEKR
Sbjct: 6 RKFGERPPPKRLTREAMRNYLKERGDQTVLILHAKVAQKSYGNEKR 51
Database: RefSeqCP
Posted date: Aug 1, 2006 9:25 PM
Number of letters in database: 19,266,565
Number of sequences in database: 33,732
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 41,209,605
Number of Sequences: 33732
Number of extensions: 933929
Number of successful extensions: 1972
Number of sequences better than 1.0e-05: 5
Number of HSP's better than 0.0 without gapping: 1862
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1971
length of database: 19,266,565
effective HSP length: 104
effective length of database: 15,758,437
effective search space used: 4207502679
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
Search to RefSeqMP
BLASTX 2.2.10 [Oct-19-2004]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20060611S-043237
(1116 letters)
Database: RefSeqMP
45,328 sequences; 21,768,885 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_033061.3| recombining binding protein suppressor of hairl... 242 4e-64
Alignment gi|XP_001005610.1| PREDICTED: similar to Recombining binding pr... 153 4e-37
Alignment gi|NP_033062.1| recombining binding protein suppressor of hairl... 114 1e-25
>ref|NP_033061.3| recombining binding protein suppressor of hairless [Mus musculus]
Length = 526
Score = 242 bits (618), Expect = 4e-64
Identities = 117/130 (90%), Positives = 120/130 (92%)
Frame = +3
Query: 213 LFFMQKLHRSHMGMKKGFFCPPPCVYLMGSGWKKKKEQMERDGCSEQESQPCAFIGIGNS 392
L K+ + G +K FFCPPPCVYLMGSGWKKKKEQMERDGCSEQESQPCAFIGIGNS
Sbjct: 75 LILHAKVAQKSYGNEKRFFCPPPCVYLMGSGWKKKKEQMERDGCSEQESQPCAFIGIGNS 134
Query: 393 DQEMQQLNLEGKNYCTAKTLYISDSDKRKHFMLSVKMFYGNSDDIGVFLSKRIKVISKPS 572
DQEMQQLNLEGKNYCTAKTLYISDSDKRKHFMLSVKMFYGNSDDIGVFLSKRIKVISKPS
Sbjct: 135 DQEMQQLNLEGKNYCTAKTLYISDSDKRKHFMLSVKMFYGNSDDIGVFLSKRIKVISKPS 194
Query: 573 KKKQSLKNAD 602
KKKQSLKNAD
Sbjct: 195 KKKQSLKNAD 204
Score = 104 bits (259), Expect = 2e-22
Identities = 51/64 (79%), Positives = 53/64 (82%)
Frame = +2
Query: 128 KFGERPPPKRLTREAMRNYLKERGDQTVLILHAKVAQKSYGNEKRFFLPSSLCVSYGQWM 307
KFGERPPPKRLTREAMRNYLKERGDQTVLILHAKVAQKSYGNEKRFF P G
Sbjct: 47 KFGERPPPKRLTREAMRNYLKERGDQTVLILHAKVAQKSYGNEKRFFCPPPCVYLMGSGW 106
Query: 308 EEKK 319
++KK
Sbjct: 107 KKKK 110
>ref|XP_001005610.1| PREDICTED: similar to Recombining binding protein suppressor of
hairless (J kappa-recombination signal binding protein)
(RBP-J kappa) [Mus musculus]
Length = 87
Score = 153 bits (386), Expect = 4e-37
Identities = 74/81 (91%), Positives = 77/81 (95%)
Frame = +3
Query: 357 SQPCAFIGIGNSDQEMQQLNLEGKNYCTAKTLYISDSDKRKHFMLSVKMFYGNSDDIGVF 536
++PC FIG GNSDQEMQQLNLEGKNYCTAKTLYI DSDKRKHFMLSVKMFYGNSDD GVF
Sbjct: 5 NKPCEFIGTGNSDQEMQQLNLEGKNYCTAKTLYIPDSDKRKHFMLSVKMFYGNSDDTGVF 64
Query: 537 LSKRIKVISKPSKKKQSLKNA 599
LSK+IKVISKPSKKKQSLKNA
Sbjct: 65 LSKQIKVISKPSKKKQSLKNA 85
>ref|NP_033062.1| recombining binding protein suppressor of hairless-like [Mus
musculus]
Length = 515
Score = 114 bits (286), Expect = 1e-25
Identities = 61/132 (46%), Positives = 81/132 (61%), Gaps = 7/132 (5%)
Frame = +3
Query: 228 KLHRSHMGMKKGFFCPPPCVYLMGSGWKKKKEQMERDGCSEQESQPCAFIGI---GNSDQ 398
K+ + G +K FFCPPPCVYL G GW+ K Q + +E C ++G+ S
Sbjct: 73 KVAQKSYGNEKRFFCPPPCVYLAGPGWRVKPMQDQALQSAETGPTVCGYMGLDGASGSAP 132
Query: 399 EMQQLNLE----GKNYCTAKTLYISDSDKRKHFMLSVKMFYGNSDDIGVFLSKRIKVISK 566
E Q+LN E + + AKTLYISD+DKRKHF L +++ ++G F S+ IKVISK
Sbjct: 133 ETQKLNFEEQPDSREFGCAKTLYISDADKRKHFRLVLRLVLRGGQELGTFHSRLIKVISK 192
Query: 567 PSKKKQSLKNAD 602
PS+KKQSLKN D
Sbjct: 193 PSQKKQSLKNTD 204
Score = 61.6 bits (148), Expect = 1e-09
Identities = 32/55 (58%), Positives = 39/55 (70%), Gaps = 1/55 (1%)
Frame = +2
Query: 113 PALLRKFGERPPPKRLT-REAMRNYLKERGDQTVLILHAKVAQKSYGNEKRFFLP 274
P+LL + PP + RE +R L++R +QTV ILHAKVAQKSYGNEKRFF P
Sbjct: 34 PSLLGSWTRSPPEHAIILREGVRTCLQQRCEQTVWILHAKVAQKSYGNEKRFFCP 88
Database: RefSeqMP
Posted date: Aug 2, 2006 12:58 AM
Number of letters in database: 21,768,885
Number of sequences in database: 45,328
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 47,731,557
Number of Sequences: 45328
Number of extensions: 1096900
Number of successful extensions: 2575
Number of sequences better than 1.0e-05: 3
Number of HSP's better than 0.0 without gapping: 2416
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2574
length of database: 21,768,885
effective HSP length: 105
effective length of database: 17,009,445
effective search space used: 4524512370
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)