Animal-Genome cDNA 20060611S-047580
Search to RefSeqSP
BLASTX 2.2.10 [Oct-19-2004]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20060611S-047580
(1162 letters)
Database: RefSeqSP
1040 sequences; 434,620 total letters
Searching...done
***** No hits found ******
Database: RefSeqSP
Posted date: Aug 1, 2006 7:14 PM
Number of letters in database: 434,620
Number of sequences in database: 1040
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 956,156
Number of Sequences: 1040
Number of extensions: 24579
Number of successful extensions: 115
Number of sequences better than 1.0e-05: 0
Number of HSP's better than 0.0 without gapping: 90
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 113
length of database: 434,620
effective HSP length: 78
effective length of database: 353,500
effective search space used: 108878000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
Search to RefSeqBP
BLASTX 2.2.10 [Oct-19-2004]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20060611S-047580
(1162 letters)
Database: RefSeqBP
33,508 sequences; 16,112,626 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_871401.1| PREDICTED: similar to G protein pathway suppres... 149 3e-36
Alignment gi|XP_596687.2| PREDICTED: similar to G protein pathway suppres... 145 8e-35
>ref|XP_871401.1| PREDICTED: similar to G protein pathway suppressor 2, partial [Bos
taurus]
Length = 138
Score = 149 bits (377), Expect = 3e-36
Identities = 82/133 (61%), Positives = 83/133 (62%)
Frame = +2
Query: 176 PASPQARSEVWQPVTEPGVHGPSAPSSTMPALLERPKLSNAMARALHRHIMMXXXXXXXX 355
PA +AR EVWQP TEPG HGPS PSSTMPALLERPKLSNAMARALHRHIMM
Sbjct: 6 PAHAKARPEVWQPATEPGAHGPSVPSSTMPALLERPKLSNAMARALHRHIMMERERKRQE 65
Query: 356 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQILKLQEKLSALQEEKHQLFLQLKK 535
QILKLQEKL ALQEEKHQLFLQLKK
Sbjct: 66 EEEVDKMMEQKMKEEQERRKKKEMEERMSLEETKEQILKLQEKLLALQEEKHQLFLQLKK 125
Query: 536 VLHEEEKRRRKEQ 574
VLHEEEKRRRKEQ
Sbjct: 126 VLHEEEKRRRKEQ 138
>ref|XP_596687.2| PREDICTED: similar to G protein pathway suppressor 2 [Bos taurus]
Length = 197
Score = 145 bits (365), Expect = 8e-35
Identities = 66/68 (97%), Positives = 66/68 (97%)
Frame = +2
Query: 650 MQGSPGGHNRPGTLMAADRAKQMFGPQVLTNRHYVGSAAAFAGTPEHGQFQGSPSGAYGT 829
MQGSPGGHNRPGTLMAADRAKQMFGPQVLT RHYVGSAAAFAGTPEHGQFQGSP GAYGT
Sbjct: 1 MQGSPGGHNRPGTLMAADRAKQMFGPQVLTTRHYVGSAAAFAGTPEHGQFQGSPGGAYGT 60
Query: 830 AQPPPHYG 853
AQPPPHYG
Sbjct: 61 AQPPPHYG 68
Score = 110 bits (274), Expect = 3e-24
Identities = 72/137 (52%), Positives = 77/137 (56%), Gaps = 4/137 (2%)
Frame = +1
Query: 754 GLSSCFRRDPGAWAVPRQPQRRLWDCSAPTSLWTTQPAYSPSQQLRAPSAFPAVQYLSQP 933
G ++ F P P P TQPAYSPSQQLRAPSAFPAVQYLSQP
Sbjct: 36 GSAAAFAGTPEHGQFQGSPGGAYGTAQPPPHYGPTQPAYSPSQQLRAPSAFPAVQYLSQP 95
Query: 934 QPQPYAVHSHFQSTQTGFSQPVAPCSYQSRW-NTLPXTCFSDSSPY-AHGSQALHP-PRN 1104
QPQPYAVHSHFQ TQTGF QP S Q + + T FSDSS QALHP P
Sbjct: 96 QPQPYAVHSHFQPTQTGFLQPGGALSLQKQMEHANQQTGFSDSSSLRPMHPQALHPAPGL 155
Query: 1105 GCLTRLPVQ-APTRKSG 1152
+LPVQ P KSG
Sbjct: 156 LASPQLPVQMQPAGKSG 172
Database: RefSeqBP
Posted date: Aug 1, 2006 7:14 PM
Number of letters in database: 16,112,626
Number of sequences in database: 33,508
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 36,597,818
Number of Sequences: 33508
Number of extensions: 1006266
Number of successful extensions: 6667
Number of sequences better than 1.0e-05: 2
Number of HSP's better than 0.0 without gapping: 4981
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6615
length of database: 16,112,626
effective HSP length: 103
effective length of database: 12,661,302
effective search space used: 3583148466
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
Search to RefSeqCP
BLASTX 2.2.10 [Oct-19-2004]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20060611S-047580
(1162 letters)
Database: RefSeqCP
33,732 sequences; 19,266,565 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_849607.1| PREDICTED: similar to G protein pathway suppres... 286 3e-77
>ref|XP_849607.1| PREDICTED: similar to G protein pathway suppressor 2 [Canis
familiaris]
Length = 327
Score = 286 bits (732), Expect = 3e-77
Identities = 149/198 (75%), Positives = 149/198 (75%)
Frame = +2
Query: 260 MPALLERPKLSNAMARALHRHIMMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 439
MPALLERPKLSNAMARALHRHIMM
Sbjct: 1 MPALLERPKLSNAMARALHRHIMMERERKRQEEEEVDKMMEQKMKEEQERRKKKEMEERM 60
Query: 440 XXXXXXXQILKLQEKLSALQEEKHQLFLQLKKVLHEEEKRRRKEQSDLTTLTSAAYQQGL 619
QILKLQEKL ALQEEKHQLFLQLKKVLHEEEKRRRKEQSDLTTLTSAAYQQ L
Sbjct: 61 SLEETKEQILKLQEKLLALQEEKHQLFLQLKKVLHEEEKRRRKEQSDLTTLTSAAYQQSL 120
Query: 620 TVHTGTHLLSMQGSPGGHNRPGTLMAADRAKQMFGPQVLTNRHYVGSAAAFAGTPEHGQF 799
TVHTGTHLLSMQGSPGGHNRPGTLMAADRAKQMFGPQVLT RHYVGSAAAF GTPEHGQF
Sbjct: 121 TVHTGTHLLSMQGSPGGHNRPGTLMAADRAKQMFGPQVLTTRHYVGSAAAFPGTPEHGQF 180
Query: 800 QGSPSGAYGTAQPPPHYG 853
QGSP AYGTAQPPPHYG
Sbjct: 181 QGSPGSAYGTAQPPPHYG 198
Score = 107 bits (268), Expect = 2e-23
Identities = 71/132 (53%), Positives = 76/132 (57%), Gaps = 4/132 (3%)
Frame = +1
Query: 769 FRRDPGAWAVPRQPQRRLWDCSAPTSLWTTQPAYSPSQQLRAPSAFPAVQYLSQPQPQPY 948
F+ PG+ QP P TQPAYSPSQQLRAPSAFPAVQYLSQPQPQPY
Sbjct: 180 FQGSPGSAYGTAQP---------PPHYGPTQPAYSPSQQLRAPSAFPAVQYLSQPQPQPY 230
Query: 949 AVHSHFQSTQTGFSQPVAPCSYQSRW-NTLPXTCFSDSSPY-AHGSQALHP-PRNGCLTR 1119
VH HFQ TQTGF QP S Q + + T FSDSS QALHP P +
Sbjct: 231 TVHGHFQPTQTGFLQPGGALSLQKQMEHANQQTSFSDSSSLRPMHPQALHPAPGLLASPQ 290
Query: 1120 LPVQ-APTRKSG 1152
LPVQ P KSG
Sbjct: 291 LPVQMQPAGKSG 302
Database: RefSeqCP
Posted date: Aug 1, 2006 9:25 PM
Number of letters in database: 19,266,565
Number of sequences in database: 33,732
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 42,803,625
Number of Sequences: 33732
Number of extensions: 1176627
Number of successful extensions: 7481
Number of sequences better than 1.0e-05: 1
Number of HSP's better than 0.0 without gapping: 5523
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7416
length of database: 19,266,565
effective HSP length: 105
effective length of database: 15,724,705
effective search space used: 4418642105
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
Search to RefSeqHP
BLASTX 2.2.10 [Oct-19-2004]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20060611S-047580
(1162 letters)
Database: RefSeqHP
39,411 sequences; 17,774,539 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_004480.1| G protein pathway suppressor 2 [Homo sapiens] 289 3e-78
>ref|NP_004480.1| G protein pathway suppressor 2 [Homo sapiens]
Length = 327
Score = 289 bits (740), Expect = 3e-78
Identities = 150/198 (75%), Positives = 151/198 (76%)
Frame = +2
Query: 260 MPALLERPKLSNAMARALHRHIMMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 439
MPALLERPKLSNAMARALHRHIMM
Sbjct: 1 MPALLERPKLSNAMARALHRHIMMERERKRQEEEEVDKMMEQKMKEEQERRKKKEMEERM 60
Query: 440 XXXXXXXQILKLQEKLSALQEEKHQLFLQLKKVLHEEEKRRRKEQSDLTTLTSAAYQQGL 619
QILKL+EKL ALQEEKHQLFLQLKKVLHEEEKRRRKEQSDLTTLTSAAYQQ L
Sbjct: 61 SLEETKEQILKLEEKLLALQEEKHQLFLQLKKVLHEEEKRRRKEQSDLTTLTSAAYQQSL 120
Query: 620 TVHTGTHLLSMQGSPGGHNRPGTLMAADRAKQMFGPQVLTNRHYVGSAAAFAGTPEHGQF 799
TVHTGTHLLSMQGSPGGHNRPGTLMAADRAKQMFGPQVLT RHYVGSAAAFAGTPEHGQF
Sbjct: 121 TVHTGTHLLSMQGSPGGHNRPGTLMAADRAKQMFGPQVLTTRHYVGSAAAFAGTPEHGQF 180
Query: 800 QGSPSGAYGTAQPPPHYG 853
QGSP GAYGTAQPPPHYG
Sbjct: 181 QGSPGGAYGTAQPPPHYG 198
Score = 108 bits (270), Expect = 9e-24
Identities = 71/137 (51%), Positives = 76/137 (55%), Gaps = 4/137 (2%)
Frame = +1
Query: 754 GLSSCFRRDPGAWAVPRQPQRRLWDCSAPTSLWTTQPAYSPSQQLRAPSAFPAVQYLSQP 933
G ++ F P P P TQPAYSPSQQLRAPSAFPAVQYLSQP
Sbjct: 166 GSAAAFAGTPEHGQFQGSPGGAYGTAQPPPHYGPTQPAYSPSQQLRAPSAFPAVQYLSQP 225
Query: 934 QPQPYAVHSHFQSTQTGFSQPVAPCSYQSRW-NTLPXTCFSDSSPY-AHGSQALHP-PRN 1104
QPQPYAVH HFQ TQTGF QP S Q + + T FSDSS QALHP P
Sbjct: 226 QPQPYAVHGHFQPTQTGFLQPGGALSLQKQMEHANQQTGFSDSSSLRPMHPQALHPAPGL 285
Query: 1105 GCLTRLPVQ-APTRKSG 1152
+LPVQ P KSG
Sbjct: 286 LASPQLPVQMQPAGKSG 302
Database: RefSeqHP
Posted date: Aug 2, 2006 12:57 AM
Number of letters in database: 17,774,539
Number of sequences in database: 39,411
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 41,961,003
Number of Sequences: 39411
Number of extensions: 1202492
Number of successful extensions: 8539
Number of sequences better than 1.0e-05: 1
Number of HSP's better than 0.0 without gapping: 5813
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8453
length of database: 17,774,539
effective HSP length: 104
effective length of database: 13,675,795
effective search space used: 3856574190
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
Search to RefSeqMP
BLASTX 2.2.10 [Oct-19-2004]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20060611S-047580
(1162 letters)
Database: RefSeqMP
45,328 sequences; 21,768,885 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_062700.2| G protein pathway suppressor 2 [Mus musculus] 293 3e-79
Alignment gi|XP_922201.1| PREDICTED: similar to G protein pathway suppres... 178 8e-45
Alignment gi|XP_977933.1| PREDICTED: similar to G protein pathway suppres... 178 8e-45
Alignment gi|XP_889138.1| PREDICTED: similar to G protein pathway suppres... 178 8e-45
>ref|NP_062700.2| G protein pathway suppressor 2 [Mus musculus]
Length = 327
Score = 293 bits (749), Expect = 3e-79
Identities = 152/198 (76%), Positives = 152/198 (76%)
Frame = +2
Query: 260 MPALLERPKLSNAMARALHRHIMMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 439
MPALLERPKLSNAMARALHRHIMM
Sbjct: 1 MPALLERPKLSNAMARALHRHIMMERERKRQEEEEVDKMMEQKMKEEQERRKKKEMEERM 60
Query: 440 XXXXXXXQILKLQEKLSALQEEKHQLFLQLKKVLHEEEKRRRKEQSDLTTLTSAAYQQGL 619
QILKLQEKLSALQEEKHQLFLQLKKVLHEEEKRRRKEQSDLTTLTSAAYQQ L
Sbjct: 61 SLEETKEQILKLQEKLSALQEEKHQLFLQLKKVLHEEEKRRRKEQSDLTTLTSAAYQQSL 120
Query: 620 TVHTGTHLLSMQGSPGGHNRPGTLMAADRAKQMFGPQVLTNRHYVGSAAAFAGTPEHGQF 799
TVHTGTHLLSMQGSPGGHNRPGTLMAADRAKQMFGPQVLT RHYVGSAAAFAGTPEHGQF
Sbjct: 121 TVHTGTHLLSMQGSPGGHNRPGTLMAADRAKQMFGPQVLTTRHYVGSAAAFAGTPEHGQF 180
Query: 800 QGSPSGAYGTAQPPPHYG 853
QGSP GAYGTAQPPPHYG
Sbjct: 181 QGSPGGAYGTAQPPPHYG 198
Score = 107 bits (266), Expect = 3e-23
Identities = 67/129 (51%), Positives = 73/129 (56%), Gaps = 3/129 (2%)
Frame = +1
Query: 754 GLSSCFRRDPGAWAVPRQPQRRLWDCSAPTSLWTTQPAYSPSQQLRAPSAFPAVQYLSQP 933
G ++ F P P P TQPAYSPSQQLRAPSAFPAVQYLSQP
Sbjct: 166 GSAAAFAGTPEHGQFQGSPGGAYGTAQPPPHYGPTQPAYSPSQQLRAPSAFPAVQYLSQP 225
Query: 934 QPQPYAVHSHFQSTQTGFSQPVAPCSYQSRW-NTLPXTCFSDSSPY-AHGSQALHP-PRN 1104
QPQPYAVH HFQ TQTGF QP + S Q + + T FSDSS QALHP P
Sbjct: 226 QPQPYAVHGHFQPTQTGFLQPGSTLSLQKQMEHANQQTSFSDSSSLRPMHPQALHPAPGL 285
Query: 1105 GCLTRLPVQ 1131
+LPVQ
Sbjct: 286 LASPQLPVQ 294
>ref|XP_922201.1| PREDICTED: similar to G protein pathway suppressor 2 [Mus musculus]
Length = 135
Score = 178 bits (452), Expect = 8e-45
Identities = 85/126 (67%), Positives = 90/126 (71%)
Frame = +2
Query: 650 MQGSPGGHNRPGTLMAADRAKQMFGPQVLTNRHYVGSAAAFAGTPEHGQFQGSPSGAYGT 829
MQG PGGHNRPGTLMAADRAKQMFGPQVLT RHYVGSAAA AGTPEHGQFQGSP GA+GT
Sbjct: 1 MQGYPGGHNRPGTLMAADRAKQMFGPQVLTTRHYVGSAAASAGTPEHGQFQGSPGGAFGT 60
Query: 830 AQPPPHYGXXXXXXXXXXXXEHLRHFLQCSTCLSHSHSPMLCTATFXXXXXXXXXXXXXV 1009
A+PPPHYG L+HFLQCSTCLSHSH+PM C ATF +
Sbjct: 61 AEPPPHYGPIQPAYSPSQQLRALQHFLQCSTCLSHSHNPMQCMATFSPLRQGSSNRQCPL 120
Query: 1010 LTKADG 1027
K DG
Sbjct: 121 FAKTDG 126
>ref|XP_977933.1| PREDICTED: similar to G protein pathway suppressor 2 [Mus musculus]
Length = 135
Score = 178 bits (452), Expect = 8e-45
Identities = 85/126 (67%), Positives = 90/126 (71%)
Frame = +2
Query: 650 MQGSPGGHNRPGTLMAADRAKQMFGPQVLTNRHYVGSAAAFAGTPEHGQFQGSPSGAYGT 829
MQG PGGHNRPGTLMAADRAKQMFGPQVLT RHYVGSAAA AGTPEHGQFQGSP GA+GT
Sbjct: 1 MQGYPGGHNRPGTLMAADRAKQMFGPQVLTTRHYVGSAAASAGTPEHGQFQGSPGGAFGT 60
Query: 830 AQPPPHYGXXXXXXXXXXXXEHLRHFLQCSTCLSHSHSPMLCTATFXXXXXXXXXXXXXV 1009
A+PPPHYG L+HFLQCSTCLSHSH+PM C ATF +
Sbjct: 61 AEPPPHYGPIQPAYSPSQQLRALQHFLQCSTCLSHSHNPMQCMATFSPLRQGSSNRQCPL 120
Query: 1010 LTKADG 1027
K DG
Sbjct: 121 FAKTDG 126
>ref|XP_889138.1| PREDICTED: similar to G protein pathway suppressor 2 [Mus musculus]
Length = 135
Score = 178 bits (452), Expect = 8e-45
Identities = 85/126 (67%), Positives = 90/126 (71%)
Frame = +2
Query: 650 MQGSPGGHNRPGTLMAADRAKQMFGPQVLTNRHYVGSAAAFAGTPEHGQFQGSPSGAYGT 829
MQG PGGHNRPGTLMAADRAKQMFGPQVLT RHYVGSAAA AGTPEHGQFQGSP GA+GT
Sbjct: 1 MQGYPGGHNRPGTLMAADRAKQMFGPQVLTTRHYVGSAAASAGTPEHGQFQGSPGGAFGT 60
Query: 830 AQPPPHYGXXXXXXXXXXXXEHLRHFLQCSTCLSHSHSPMLCTATFXXXXXXXXXXXXXV 1009
A+PPPHYG L+HFLQCSTCLSHSH+PM C ATF +
Sbjct: 61 AEPPPHYGPIQPAYSPSQQLRALQHFLQCSTCLSHSHNPMQCMATFSPLRQGSSNRQCPL 120
Query: 1010 LTKADG 1027
K DG
Sbjct: 121 FAKTDG 126
Database: RefSeqMP
Posted date: Aug 2, 2006 12:58 AM
Number of letters in database: 21,768,885
Number of sequences in database: 45,328
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 48,893,966
Number of Sequences: 45328
Number of extensions: 1324139
Number of successful extensions: 8146
Number of sequences better than 1.0e-05: 4
Number of HSP's better than 0.0 without gapping: 6000
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8044
length of database: 21,768,885
effective HSP length: 105
effective length of database: 17,009,445
effective search space used: 4779654045
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)