BLASTX 2.2.10 [Oct-19-2004]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20060611S-048550
(1120 letters)
Database: RefSeqSP
1040 sequences; 434,620 total letters
Searching...done
***** No hits found ******
Database: RefSeqSP
Posted date: Aug 1, 2006 7:14 PM
Number of letters in database: 434,620
Number of sequences in database: 1040
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 948,137
Number of Sequences: 1040
Number of extensions: 22264
Number of successful extensions: 45
Number of sequences better than 1.0e-05: 0
Number of HSP's better than 0.0 without gapping: 43
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 45
length of database: 434,620
effective HSP length: 78
effective length of database: 353,500
effective search space used: 103929000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
Search to RefSeqBP
BLASTX 2.2.10 [Oct-19-2004]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20060611S-048550
(1120 letters)
Database: RefSeqBP
33,508 sequences; 16,112,626 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_613987.2| PREDICTED: similar to NADP-dependent malic enzy... 444 e-125
Alignment gi|XP_604169.2| PREDICTED: similar to malic enzyme 3, NADP(+)-d... 239 4e-63
Alignment gi|XP_875137.1| PREDICTED: similar to NAD-dependent malic enzym... 165 5e-41
Alignment gi|XP_584500.2| PREDICTED: similar to NAD-dependent malic enzym... 96 5e-20
>ref|XP_613987.2| PREDICTED: similar to NADP-dependent malic enzyme (NADP-ME) (Malic
enzyme 1) [Bos taurus]
Length = 472
Score = 444 bits (1142), Expect = e-125
Identities = 224/253 (88%), Positives = 233/253 (92%)
Frame = +3
Query: 6 KRRCPKEKAIKKIWLVDSKGLIVKGRAALTNXXXXXXXXXXXMKNLEAIVQDIKPTALIG 185
K KE+AI+KIWLVDSKGLIVKGRAALT MKNLEAIVQDIKPTALIG
Sbjct: 220 KEGLSKEQAIEKIWLVDSKGLIVKGRAALTQEKEEFAHEHKEMKNLEAIVQDIKPTALIG 279
Query: 186 VAAIGGAFSEQILKDMAAFNERPIIFALSNPTSKAECTAEQCYTLTQGRAIFASGSPFDP 365
VAAIGGAFSEQI+KDMAAFNERPIIFALSNPTSKAECTAEQCY LT+GRAIFASGSPFDP
Sbjct: 280 VAAIGGAFSEQIIKDMAAFNERPIIFALSNPTSKAECTAEQCYKLTKGRAIFASGSPFDP 339
Query: 366 VTLPSGQTLYPGQGNNSYVFPGVALGVVACGLRHITDKIFLTTAEVIAQQVSDKHLEEGR 545
VTLPSG+TLYPGQGNNSYVFPGVALGVVACGLRHITDKIFLTTAEVIAQQVSDKHLEEGR
Sbjct: 340 VTLPSGKTLYPGQGNNSYVFPGVALGVVACGLRHITDKIFLTTAEVIAQQVSDKHLEEGR 399
Query: 546 LYPPLNTIRDVSLKIAEKIVRDAYQEKTATIYPEPSNKEAFVRSQMYSTDYDQILPDGYS 725
LYPPL+TIRDVSLKIAEKIV+DAYQEKTAT+YPEP NKEAFVRSQMYSTDYDQILPD Y
Sbjct: 400 LYPPLDTIRDVSLKIAEKIVKDAYQEKTATVYPEPPNKEAFVRSQMYSTDYDQILPDCYP 459
Query: 726 WPEEAQKIQTKLD 764
WP+EAQKIQTKLD
Sbjct: 460 WPKEAQKIQTKLD 472
>ref|XP_604169.2| PREDICTED: similar to malic enzyme 3, NADP(+)-dependent,
mitochondrial [Bos taurus]
Length = 564
Score = 239 bits (609), Expect = 4e-63
Identities = 121/187 (64%), Positives = 150/187 (80%)
Frame = +3
Query: 66 LIVKGRAALTNXXXXXXXXXXXMKNLEAIVQDIKPTALIGVAAIGGAFSEQILKDMAAFN 245
L ++GR+ L + + +LE +V+ +KPTA+IGVAAI GAF+EQIL+DMA+F+
Sbjct: 305 LSLQGRSHLNHEKEMFAQDHPEVNSLEEVVRLVKPTAIIGVAAIAGAFTEQILRDMASFH 364
Query: 246 ERPIIFALSNPTSKAECTAEQCYTLTQGRAIFASGSPFDPVTLPSGQTLYPGQGNNSYVF 425
E PIIFALSNPTSKAECTAE+CY +T+GR IFASGSPF VTL G+T +PGQGNN+YVF
Sbjct: 365 EHPIIFALSNPTSKAECTAEKCYRVTEGRGIFASGSPFPSVTLEDGRTFFPGQGNNAYVF 424
Query: 426 PGVALGVVACGLRHITDKIFLTTAEVIAQQVSDKHLEEGRLYPPLNTIRDVSLKIAEKIV 605
PGVALGV+A G+RHI D+IFL TAE IAQ+VS+ HL +GRLYPPL+TIRDVSL+IA K V
Sbjct: 425 PGVALGVIAGGIRHIPDEIFLLTAEQIAQEVSEHHLSQGRLYPPLSTIRDVSLRIAIK-V 483
Query: 606 RDAYQEK 626
RD+ K
Sbjct: 484 RDSSPPK 490
>ref|XP_875137.1| PREDICTED: similar to NAD-dependent malic enzyme, mitochondrial
precursor (NAD-ME) (Malic enzyme 2), partial [Bos
taurus]
Length = 152
Score = 165 bits (418), Expect = 5e-41
Identities = 73/139 (52%), Positives = 98/139 (70%)
Frame = +3
Query: 324 QGRAIFASGSPFDPVTLPSGQTLYPGQGNNSYVFPGVALGVVACGLRHITDKIFLTTAEV 503
QGR +FASGSPF+PV L GQ PGQGNN Y+FPGVAL V+ C RHI+D +FL A+
Sbjct: 6 QGRCLFASGSPFEPVKLSDGQVFTPGQGNNVYIFPGVALAVILCNTRHISDHVFLEAAKA 65
Query: 504 IAQQVSDKHLEEGRLYPPLNTIRDVSLKIAEKIVRDAYQEKTATIYPEPSNKEAFVRSQM 683
+ Q++DK L +GRLYPPL+ I++VS+ IA K+ Y K A YPEP +K ++R ++
Sbjct: 66 LTSQLTDKELAQGRLYPPLSNIQEVSINIAIKVTEYLYANKMAFRYPEPEDKAKYIRERI 125
Query: 684 YSTDYDQILPDGYSWPEEA 740
+ ++YD +LPD Y WPE A
Sbjct: 126 WRSEYDSLLPDVYEWPEAA 144
>ref|XP_584500.2| PREDICTED: similar to NAD-dependent malic enzyme, mitochondrial
precursor (NAD-ME) (Malic enzyme 2), partial [Bos
taurus]
Length = 513
Score = 95.9 bits (237), Expect = 5e-20
Identities = 51/105 (48%), Positives = 65/105 (61%), Gaps = 3/105 (2%)
Frame = +3
Query: 21 KEKAIKKIWLVDSKGLIVKGRAALTNXXXXXXXXXXXMK---NLEAIVQDIKPTALIGVA 191
+E+A KKIW+VD GL+ KGR A E V +KP+A+IGVA
Sbjct: 409 EEEARKKIWMVDKFGLLFKGRKAKIESHQEAFAHSAPESLPDTFEEAVNILKPSAIIGVA 468
Query: 192 AIGGAFSEQILKDMAAFNERPIIFALSNPTSKAECTAEQCYTLTQ 326
G F+ ++K MA NERPIIFALSNPT++AECTAE+ YTLT+
Sbjct: 469 GAGRLFTPGVIKAMAEINERPIIFALSNPTAQAECTAEEAYTLTE 513
Database: RefSeqBP
Posted date: Aug 1, 2006 7:14 PM
Number of letters in database: 16,112,626
Number of sequences in database: 33,508
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 33,978,158
Number of Sequences: 33508
Number of extensions: 785362
Number of successful extensions: 1881
Number of sequences better than 1.0e-05: 4
Number of HSP's better than 0.0 without gapping: 1783
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1880
length of database: 16,112,626
effective HSP length: 103
effective length of database: 12,661,302
effective search space used: 3405890238
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
Search to RefSeqCP
BLASTX 2.2.10 [Oct-19-2004]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20060611S-048550
(1120 letters)
Database: RefSeqCP
33,732 sequences; 19,266,565 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_532217.2| PREDICTED: similar to NADP-dependent malic enzy... 442 e-124
Alignment gi|XP_542269.2| PREDICTED: similar to malic enzyme 3, NADP(+)-d... 328 6e-90
Alignment gi|XP_848770.1| PREDICTED: similar to malic enzyme 3, NADP(+)-d... 328 6e-90
Alignment gi|XP_857227.1| PREDICTED: similar to malic enzyme 3, NADP(+)-d... 311 7e-85
Alignment gi|XP_857135.1| PREDICTED: similar to malic enzyme 3, NADP(+)-d... 308 8e-84
Alignment gi|XP_857091.1| PREDICTED: similar to NADP-dependent malic enzy... 298 6e-81
Alignment gi|XP_857177.1| PREDICTED: similar to malic enzyme 3, NADP(+)-d... 256 4e-68
Alignment gi|XP_849530.1| PREDICTED: similar to NAD-dependent malic enzym... 251 1e-66
Alignment gi|XP_533402.2| PREDICTED: similar to NAD-dependent malic enzym... 251 1e-66
Alignment gi|XP_857051.1| PREDICTED: similar to malic enzyme 3, NADP(+)-d... 59 7e-09
>ref|XP_532217.2| PREDICTED: similar to NADP-dependent malic enzyme (NADP-ME) (Malic
enzyme 1) [Canis familiaris]
Length = 634
Score = 442 bits (1138), Expect = e-124
Identities = 222/253 (87%), Positives = 231/253 (91%)
Frame = +3
Query: 6 KRRCPKEKAIKKIWLVDSKGLIVKGRAALTNXXXXXXXXXXXMKNLEAIVQDIKPTALIG 185
K PKEKA+K IWLVDSKGLIVKGRAALT MKNLEAIVQ+IKPTALIG
Sbjct: 381 KEGLPKEKAMKNIWLVDSKGLIVKGRAALTQEKEQFAHEHEEMKNLEAIVQEIKPTALIG 440
Query: 186 VAAIGGAFSEQILKDMAAFNERPIIFALSNPTSKAECTAEQCYTLTQGRAIFASGSPFDP 365
VAAIGGAFSEQILKDMAAFNERPIIFALSNPTSKAECTAEQCY LT+GRAIFASGSPFDP
Sbjct: 441 VAAIGGAFSEQILKDMAAFNERPIIFALSNPTSKAECTAEQCYKLTKGRAIFASGSPFDP 500
Query: 366 VTLPSGQTLYPGQGNNSYVFPGVALGVVACGLRHITDKIFLTTAEVIAQQVSDKHLEEGR 545
VTLP+G+TLYPGQGNNSYVFPGVALGVVACGLRHITD IFLTTAE+IAQQVSDKHLEEGR
Sbjct: 501 VTLPNGRTLYPGQGNNSYVFPGVALGVVACGLRHITDNIFLTTAEIIAQQVSDKHLEEGR 560
Query: 546 LYPPLNTIRDVSLKIAEKIVRDAYQEKTATIYPEPSNKEAFVRSQMYSTDYDQILPDGYS 725
LYPPL+TIRDVSLKIA KIV+DAYQEKTAT+YPEP NKEAFVRSQMY TDYDQILPD YS
Sbjct: 561 LYPPLDTIRDVSLKIAAKIVKDAYQEKTATVYPEPPNKEAFVRSQMYDTDYDQILPDCYS 620
Query: 726 WPEEAQKIQTKLD 764
WPEEAQKIQTKLD
Sbjct: 621 WPEEAQKIQTKLD 633
>ref|XP_542269.2| PREDICTED: similar to malic enzyme 3, NADP(+)-dependent,
mitochondrial isoform 1 [Canis familiaris]
Length = 569
Score = 328 bits (841), Expect = 6e-90
Identities = 160/250 (64%), Positives = 199/250 (79%)
Frame = +3
Query: 6 KRRCPKEKAIKKIWLVDSKGLIVKGRAALTNXXXXXXXXXXXMKNLEAIVQDIKPTALIG 185
K PK +A +KIW+VDSKGLIVKGR+ L + +K+LE +V+ +KPTA+IG
Sbjct: 319 KEGVPKAEATRKIWMVDSKGLIVKGRSHLNHEKEMFAQDHPEVKSLEEVVRLVKPTAIIG 378
Query: 186 VAAIGGAFSEQILKDMAAFNERPIIFALSNPTSKAECTAEQCYTLTQGRAIFASGSPFDP 365
VAAI GAF+EQIL+DMA+F+ERPIIFALSNPTSKAECTAE+CY +T+GR IFASGSPF
Sbjct: 379 VAAIAGAFTEQILRDMASFHERPIIFALSNPTSKAECTAEKCYRVTEGRGIFASGSPFKS 438
Query: 366 VTLPSGQTLYPGQGNNSYVFPGVALGVVACGLRHITDKIFLTTAEVIAQQVSDKHLEEGR 545
VTL G+T PGQGNN+YVFPGVALGV+A G+RHI D+IFL TAE IAQ+VS++HL +GR
Sbjct: 439 VTLEDGRTFIPGQGNNAYVFPGVALGVIAGGIRHIPDEIFLLTAEQIAQEVSEQHLSQGR 498
Query: 546 LYPPLNTIRDVSLKIAEKIVRDAYQEKTATIYPEPSNKEAFVRSQMYSTDYDQILPDGYS 725
LYPPL+TIRDVSL+IA K++ AY+ A+ YPEP +KEAFVRS +Y+ DYD D Y+
Sbjct: 499 LYPPLSTIRDVSLRIAIKVLDFAYKHNLASYYPEPKDKEAFVRSLVYTPDYDSFTLDSYT 558
Query: 726 WPEEAQKIQT 755
WP+EA +QT
Sbjct: 559 WPKEAMNVQT 568
>ref|XP_848770.1| PREDICTED: similar to malic enzyme 3, NADP(+)-dependent,
mitochondrial isoform 2 [Canis familiaris]
Length = 604
Score = 328 bits (841), Expect = 6e-90
Identities = 160/250 (64%), Positives = 199/250 (79%)
Frame = +3
Query: 6 KRRCPKEKAIKKIWLVDSKGLIVKGRAALTNXXXXXXXXXXXMKNLEAIVQDIKPTALIG 185
K PK +A +KIW+VDSKGLIVKGR+ L + +K+LE +V+ +KPTA+IG
Sbjct: 354 KEGVPKAEATRKIWMVDSKGLIVKGRSHLNHEKEMFAQDHPEVKSLEEVVRLVKPTAIIG 413
Query: 186 VAAIGGAFSEQILKDMAAFNERPIIFALSNPTSKAECTAEQCYTLTQGRAIFASGSPFDP 365
VAAI GAF+EQIL+DMA+F+ERPIIFALSNPTSKAECTAE+CY +T+GR IFASGSPF
Sbjct: 414 VAAIAGAFTEQILRDMASFHERPIIFALSNPTSKAECTAEKCYRVTEGRGIFASGSPFKS 473
Query: 366 VTLPSGQTLYPGQGNNSYVFPGVALGVVACGLRHITDKIFLTTAEVIAQQVSDKHLEEGR 545
VTL G+T PGQGNN+YVFPGVALGV+A G+RHI D+IFL TAE IAQ+VS++HL +GR
Sbjct: 474 VTLEDGRTFIPGQGNNAYVFPGVALGVIAGGIRHIPDEIFLLTAEQIAQEVSEQHLSQGR 533
Query: 546 LYPPLNTIRDVSLKIAEKIVRDAYQEKTATIYPEPSNKEAFVRSQMYSTDYDQILPDGYS 725
LYPPL+TIRDVSL+IA K++ AY+ A+ YPEP +KEAFVRS +Y+ DYD D Y+
Sbjct: 534 LYPPLSTIRDVSLRIAIKVLDFAYKHNLASYYPEPKDKEAFVRSLVYTPDYDSFTLDSYT 593
Query: 726 WPEEAQKIQT 755
WP+EA +QT
Sbjct: 594 WPKEAMNVQT 603
>ref|XP_857227.1| PREDICTED: similar to malic enzyme 3, NADP(+)-dependent,
mitochondrial isoform 7 [Canis familiaris]
Length = 562
Score = 311 bits (797), Expect = 7e-85
Identities = 158/270 (58%), Positives = 198/270 (73%), Gaps = 20/270 (7%)
Frame = +3
Query: 6 KRRCPKEKAIKKIWLVDSKGLIVKGRAA--------------------LTNXXXXXXXXX 125
K PK +A +KIW+VDSKGLIVK ++ L +
Sbjct: 292 KEGVPKAEATRKIWMVDSKGLIVKVLSSSYQCLACNECVIMPADPKDHLNHEKEMFAQDH 351
Query: 126 XXMKNLEAIVQDIKPTALIGVAAIGGAFSEQILKDMAAFNERPIIFALSNPTSKAECTAE 305
+K+LE +V+ +KPTA+IGVAAI GAF+EQIL+DMA+F+ERPIIFALSNPTSKAECTAE
Sbjct: 352 PEVKSLEEVVRLVKPTAIIGVAAIAGAFTEQILRDMASFHERPIIFALSNPTSKAECTAE 411
Query: 306 QCYTLTQGRAIFASGSPFDPVTLPSGQTLYPGQGNNSYVFPGVALGVVACGLRHITDKIF 485
+CY +T+GR IFASGSPF VTL G+T PGQGNN+YVFPGVALGV+A G+RHI D+IF
Sbjct: 412 KCYRVTEGRGIFASGSPFKSVTLEDGRTFIPGQGNNAYVFPGVALGVIAGGIRHIPDEIF 471
Query: 486 LTTAEVIAQQVSDKHLEEGRLYPPLNTIRDVSLKIAEKIVRDAYQEKTATIYPEPSNKEA 665
L TAE IAQ+VS++HL +GRLYPPL+TIRDVSL+IA K++ AY+ A+ YPEP +KEA
Sbjct: 472 LLTAEQIAQEVSEQHLSQGRLYPPLSTIRDVSLRIAIKVLDFAYKHNLASYYPEPKDKEA 531
Query: 666 FVRSQMYSTDYDQILPDGYSWPEEAQKIQT 755
FVRS +Y+ DYD D Y+WP+EA +QT
Sbjct: 532 FVRSLVYTPDYDSFTLDSYTWPKEAMNVQT 561
>ref|XP_857135.1| PREDICTED: similar to malic enzyme 3, NADP(+)-dependent,
mitochondrial isoform 5 [Canis familiaris]
Length = 573
Score = 308 bits (788), Expect = 8e-84
Identities = 160/281 (56%), Positives = 199/281 (70%), Gaps = 31/281 (11%)
Frame = +3
Query: 6 KRRCPKEKAIKKIWLVDSKGLIVK---GRAALTNXXXXXXXXXXXMKNLEAIVQDIKPTA 176
K PK +A +KIW+VDSKGLIVK GR+ L + +K+LE +V+ +KPTA
Sbjct: 292 KEGVPKAEATRKIWMVDSKGLIVKVLSGRSHLNHEKEMFAQDHPEVKSLEEVVRLVKPTA 351
Query: 177 LIGVAAIGGAFSEQILKDMAAFNERPIIFALSNPTSKAECTAEQCYTLTQ---------- 326
+IGVAAI GAF+EQIL+DMA+F+ERPIIFALSNPTSKAECTAE+CY +T+
Sbjct: 352 IIGVAAIAGAFTEQILRDMASFHERPIIFALSNPTSKAECTAEKCYRVTEVSGESFLPQA 411
Query: 327 ------------------GRAIFASGSPFDPVTLPSGQTLYPGQGNNSYVFPGVALGVVA 452
GR IFASGSPF VTL G+T PGQGNN+YVFPGVALGV+A
Sbjct: 412 ERTYPSSYHHVILFRVPLGRGIFASGSPFKSVTLEDGRTFIPGQGNNAYVFPGVALGVIA 471
Query: 453 CGLRHITDKIFLTTAEVIAQQVSDKHLEEGRLYPPLNTIRDVSLKIAEKIVRDAYQEKTA 632
G+RHI D+IFL TAE IAQ+VS++HL +GRLYPPL+TIRDVSL+IA K++ AY+ A
Sbjct: 472 GGIRHIPDEIFLLTAEQIAQEVSEQHLSQGRLYPPLSTIRDVSLRIAIKVLDFAYKHNLA 531
Query: 633 TIYPEPSNKEAFVRSQMYSTDYDQILPDGYSWPEEAQKIQT 755
+ YPEP +KEAFVRS +Y+ DYD D Y+WP+EA +QT
Sbjct: 532 SYYPEPKDKEAFVRSLVYTPDYDSFTLDSYTWPKEAMNVQT 572
>ref|XP_857091.1| PREDICTED: similar to NADP-dependent malic enzyme, mitochondrial
precursor (NADP-ME) (Malic enzyme 3) isoform 4 [Canis
familiaris]
Length = 231
Score = 298 bits (763), Expect = 6e-81
Identities = 145/227 (63%), Positives = 181/227 (79%)
Frame = +3
Query: 75 KGRAALTNXXXXXXXXXXXMKNLEAIVQDIKPTALIGVAAIGGAFSEQILKDMAAFNERP 254
KGR+ L + +K+LE +V+ +KPTA+IGVAAI GAF+EQIL+DMA+F+ERP
Sbjct: 4 KGRSHLNHEKEMFAQDHPEVKSLEEVVRLVKPTAIIGVAAIAGAFTEQILRDMASFHERP 63
Query: 255 IIFALSNPTSKAECTAEQCYTLTQGRAIFASGSPFDPVTLPSGQTLYPGQGNNSYVFPGV 434
IIFALSNPTSKAECTAE+CY +T+GR IFASGSPF VTL G+T PGQGNN+YVFPGV
Sbjct: 64 IIFALSNPTSKAECTAEKCYRVTEGRGIFASGSPFKSVTLEDGRTFIPGQGNNAYVFPGV 123
Query: 435 ALGVVACGLRHITDKIFLTTAEVIAQQVSDKHLEEGRLYPPLNTIRDVSLKIAEKIVRDA 614
ALGV+A G+RHI D+IFL TAE IAQ+VS++HL +GRLYPPL+TIRDVSL+IA K++ A
Sbjct: 124 ALGVIAGGIRHIPDEIFLLTAEQIAQEVSEQHLSQGRLYPPLSTIRDVSLRIAIKVLDFA 183
Query: 615 YQEKTATIYPEPSNKEAFVRSQMYSTDYDQILPDGYSWPEEAQKIQT 755
Y+ A+ YPEP +KEAFVRS +Y+ DYD D Y+WP+EA +QT
Sbjct: 184 YKHNLASYYPEPKDKEAFVRSLVYTPDYDSFTLDSYTWPKEAMNVQT 230
>ref|XP_857177.1| PREDICTED: similar to malic enzyme 3, NADP(+)-dependent,
mitochondrial isoform 6 [Canis familiaris]
Length = 513
Score = 256 bits (653), Expect = 4e-68
Identities = 131/250 (52%), Positives = 167/250 (66%)
Frame = +3
Query: 6 KRRCPKEKAIKKIWLVDSKGLIVKGRAALTNXXXXXXXXXXXMKNLEAIVQDIKPTALIG 185
K PK +A +KIW+VDSKGLIVKGR+ L + +K+LE +V+ +KPTA+IG
Sbjct: 292 KEGVPKAEATRKIWMVDSKGLIVKGRSHLNHEKEMFAQDHPEVKSLEEVVRLVKPTAIIG 351
Query: 186 VAAIGGAFSEQILKDMAAFNERPIIFALSNPTSKAECTAEQCYTLTQGRAIFASGSPFDP 365
+AECTAE+CY +T+GR IFASGSPF
Sbjct: 352 -----------------------------RRRQEAECTAEKCYRVTEGRGIFASGSPFKS 382
Query: 366 VTLPSGQTLYPGQGNNSYVFPGVALGVVACGLRHITDKIFLTTAEVIAQQVSDKHLEEGR 545
VTL G+T PGQGNN+YVFPGVALGV+A G+RHI D+IFL TAE IAQ+VS++HL +GR
Sbjct: 383 VTLEDGRTFIPGQGNNAYVFPGVALGVIAGGIRHIPDEIFLLTAEQIAQEVSEQHLSQGR 442
Query: 546 LYPPLNTIRDVSLKIAEKIVRDAYQEKTATIYPEPSNKEAFVRSQMYSTDYDQILPDGYS 725
LYPPL+TIRDVSL+IA K++ AY+ A+ YPEP +KEAFVRS +Y+ DYD D Y+
Sbjct: 443 LYPPLSTIRDVSLRIAIKVLDFAYKHNLASYYPEPKDKEAFVRSLVYTPDYDSFTLDSYT 502
Query: 726 WPEEAQKIQT 755
WP+EA +QT
Sbjct: 503 WPKEAMNVQT 512
>ref|XP_849530.1| PREDICTED: similar to NAD-dependent malic enzyme, mitochondrial
precursor (NAD-ME) (Malic enzyme 2) isoform 2 [Canis
familiaris]
Length = 584
Score = 251 bits (640), Expect = 1e-66
Identities = 123/243 (50%), Positives = 164/243 (67%), Gaps = 3/243 (1%)
Frame = +3
Query: 21 KEKAIKKIWLVDSKGLIVKGRAA-LTNXXXXXXXXXXXM--KNLEAIVQDIKPTALIGVA 191
+E+A KKIW+VD GL+ KGR A + N + E V ++P+A+IGVA
Sbjct: 334 EEEAQKKIWMVDKFGLLFKGRKAKIENHQEPFAHSAPGIIPDTFEDAVNILRPSAIIGVA 393
Query: 192 AIGGAFSEQILKDMAAFNERPIIFALSNPTSKAECTAEQCYTLTQGRAIFASGSPFDPVT 371
G F+ ++K MA NERP+IFALSNPT+ AECTAE+ YTLT+GR +FASGSPF+PV
Sbjct: 394 GAGRLFTPGVIKAMADINERPVIFALSNPTAMAECTAEEAYTLTEGRCLFASGSPFEPVK 453
Query: 372 LPSGQTLYPGQGNNSYVFPGVALGVVACGLRHITDKIFLTTAEVIAQQVSDKHLEEGRLY 551
L GQ PGQGNN Y+FPGVAL V+ C RHI+D +FL A+ +A Q++DK L +GRLY
Sbjct: 454 LSDGQLFTPGQGNNVYIFPGVALAVILCNTRHISDHVFLEAAKALANQLTDKELAQGRLY 513
Query: 552 PPLNTIRDVSLKIAEKIVRDAYQEKTATIYPEPSNKEAFVRSQMYSTDYDQILPDGYSWP 731
PPL I++VS+ IA K+ Y K A YPEP +K ++R +++ ++YD +LPD Y WP
Sbjct: 514 PPLADIQEVSINIAIKVTEYLYANKMAFRYPEPEDKAKYIRERIWRSEYDSLLPDVYDWP 573
Query: 732 EEA 740
E A
Sbjct: 574 ESA 576
>ref|XP_533402.2| PREDICTED: similar to NAD-dependent malic enzyme, mitochondrial
precursor (NAD-ME) (Malic enzyme 2) isoform 1 [Canis
familiaris]
Length = 499
Score = 251 bits (640), Expect = 1e-66
Identities = 123/243 (50%), Positives = 164/243 (67%), Gaps = 3/243 (1%)
Frame = +3
Query: 21 KEKAIKKIWLVDSKGLIVKGRAA-LTNXXXXXXXXXXXM--KNLEAIVQDIKPTALIGVA 191
+E+A KKIW+VD GL+ KGR A + N + E V ++P+A+IGVA
Sbjct: 249 EEEAQKKIWMVDKFGLLFKGRKAKIENHQEPFAHSAPGIIPDTFEDAVNILRPSAIIGVA 308
Query: 192 AIGGAFSEQILKDMAAFNERPIIFALSNPTSKAECTAEQCYTLTQGRAIFASGSPFDPVT 371
G F+ ++K MA NERP+IFALSNPT+ AECTAE+ YTLT+GR +FASGSPF+PV
Sbjct: 309 GAGRLFTPGVIKAMADINERPVIFALSNPTAMAECTAEEAYTLTEGRCLFASGSPFEPVK 368
Query: 372 LPSGQTLYPGQGNNSYVFPGVALGVVACGLRHITDKIFLTTAEVIAQQVSDKHLEEGRLY 551
L GQ PGQGNN Y+FPGVAL V+ C RHI+D +FL A+ +A Q++DK L +GRLY
Sbjct: 369 LSDGQLFTPGQGNNVYIFPGVALAVILCNTRHISDHVFLEAAKALANQLTDKELAQGRLY 428
Query: 552 PPLNTIRDVSLKIAEKIVRDAYQEKTATIYPEPSNKEAFVRSQMYSTDYDQILPDGYSWP 731
PPL I++VS+ IA K+ Y K A YPEP +K ++R +++ ++YD +LPD Y WP
Sbjct: 429 PPLADIQEVSINIAIKVTEYLYANKMAFRYPEPEDKAKYIRERIWRSEYDSLLPDVYDWP 488
Query: 732 EEA 740
E A
Sbjct: 489 ESA 491
>ref|XP_857051.1| PREDICTED: similar to malic enzyme 3, NADP(+)-dependent,
mitochondrial isoform 3 [Canis familiaris]
Length = 361
Score = 59.3 bits (142), Expect = 7e-09
Identities = 29/60 (48%), Positives = 40/60 (66%)
Frame = +3
Query: 6 KRRCPKEKAIKKIWLVDSKGLIVKGRAALTNXXXXXXXXXXXMKNLEAIVQDIKPTALIG 185
K PK +A +KIW+VDSKGLIVKGR+ L + +K+LE +V+ +KPTA+IG
Sbjct: 292 KEGVPKAEATRKIWMVDSKGLIVKGRSHLNHEKEMFAQDHPEVKSLEEVVRLVKPTAIIG 351
Database: RefSeqCP
Posted date: Aug 1, 2006 9:25 PM
Number of letters in database: 19,266,565
Number of sequences in database: 33,732
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 39,929,979
Number of Sequences: 33732
Number of extensions: 921441
Number of successful extensions: 2219
Number of sequences better than 1.0e-05: 10
Number of HSP's better than 0.0 without gapping: 2060
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2214
length of database: 19,266,565
effective HSP length: 104
effective length of database: 15,758,437
effective search space used: 4223261116
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
Search to RefSeqHP
BLASTX 2.2.10 [Oct-19-2004]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20060611S-048550
(1120 letters)
Database: RefSeqHP
39,411 sequences; 17,774,539 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_002386.1| cytosolic malic enzyme 1 [Homo sapiens] 444 e-125
Alignment gi|NP_001014811.1| malic enzyme 3, NADP(+)-dependent, mitochond... 326 2e-89
Alignment gi|NP_006671.2| malic enzyme 3, NADP(+)-dependent, mitochondria... 326 2e-89
Alignment gi|NP_002387.1| malic enzyme 2, NAD(+)-dependent, mitochondrial... 246 3e-65
>ref|NP_002386.1| cytosolic malic enzyme 1 [Homo sapiens]
Length = 572
Score = 444 bits (1143), Expect = e-125
Identities = 223/253 (88%), Positives = 232/253 (91%)
Frame = +3
Query: 6 KRRCPKEKAIKKIWLVDSKGLIVKGRAALTNXXXXXXXXXXXMKNLEAIVQDIKPTALIG 185
K PKEKAIKKIWLVDSKGLIVKGRA+LT MKNLEAIVQ+IKPTALIG
Sbjct: 319 KEGLPKEKAIKKIWLVDSKGLIVKGRASLTQEKEKFAHEHEEMKNLEAIVQEIKPTALIG 378
Query: 186 VAAIGGAFSEQILKDMAAFNERPIIFALSNPTSKAECTAEQCYTLTQGRAIFASGSPFDP 365
VAAIGGAFSEQILKDMAAFNERPIIFALSNPTSKAEC+AEQCY +T+GRAIFASGSPFDP
Sbjct: 379 VAAIGGAFSEQILKDMAAFNERPIIFALSNPTSKAECSAEQCYKITKGRAIFASGSPFDP 438
Query: 366 VTLPSGQTLYPGQGNNSYVFPGVALGVVACGLRHITDKIFLTTAEVIAQQVSDKHLEEGR 545
VTLP+GQTLYPGQGNNSYVFPGVALGVVACGLR ITD IFLTTAEVIAQQVSDKHLEEGR
Sbjct: 439 VTLPNGQTLYPGQGNNSYVFPGVALGVVACGLRQITDNIFLTTAEVIAQQVSDKHLEEGR 498
Query: 546 LYPPLNTIRDVSLKIAEKIVRDAYQEKTATIYPEPSNKEAFVRSQMYSTDYDQILPDGYS 725
LYPPLNTIRDVSLKIAEKIV+DAYQEKTAT+YPEP NKEAFVRSQMYSTDYDQILPD YS
Sbjct: 499 LYPPLNTIRDVSLKIAEKIVKDAYQEKTATVYPEPQNKEAFVRSQMYSTDYDQILPDCYS 558
Query: 726 WPEEAQKIQTKLD 764
WPEE QKIQTK+D
Sbjct: 559 WPEEVQKIQTKVD 571
>ref|NP_001014811.1| malic enzyme 3, NADP(+)-dependent, mitochondrial [Homo sapiens]
Length = 604
Score = 326 bits (836), Expect = 2e-89
Identities = 159/250 (63%), Positives = 198/250 (79%)
Frame = +3
Query: 6 KRRCPKEKAIKKIWLVDSKGLIVKGRAALTNXXXXXXXXXXXMKNLEAIVQDIKPTALIG 185
K PK +A +KIW+VDSKGLIVKGR+ L + + +LE +V+ +KPTA+IG
Sbjct: 354 KEGVPKAEATRKIWMVDSKGLIVKGRSHLNHEKEMFAQDHPEVNSLEEVVRLVKPTAIIG 413
Query: 186 VAAIGGAFSEQILKDMAAFNERPIIFALSNPTSKAECTAEQCYTLTQGRAIFASGSPFDP 365
VAAI GAF+EQIL+DMA+F+ERPIIFALSNPTSKAECTAE+CY +T+GR IFASGSPF
Sbjct: 414 VAAIAGAFTEQILRDMASFHERPIIFALSNPTSKAECTAEKCYRVTEGRGIFASGSPFKS 473
Query: 366 VTLPSGQTLYPGQGNNSYVFPGVALGVVACGLRHITDKIFLTTAEVIAQQVSDKHLEEGR 545
VTL G+T PGQGNN+YVFPGVALGV+A G+RHI D+IFL TAE IAQ+VS++HL +GR
Sbjct: 474 VTLEDGKTFIPGQGNNAYVFPGVALGVIAGGIRHIPDEIFLLTAEQIAQEVSEQHLSQGR 533
Query: 546 LYPPLNTIRDVSLKIAEKIVRDAYQEKTATIYPEPSNKEAFVRSQMYSTDYDQILPDGYS 725
LYPPL+TIRDVSL+IA K++ AY+ A+ YPEP +KEAFVRS +Y+ DYD D Y+
Sbjct: 534 LYPPLSTIRDVSLRIAIKVLDYAYKHNLASYYPEPKDKEAFVRSLVYTPDYDSFTLDSYT 593
Query: 726 WPEEAQKIQT 755
WP+EA +QT
Sbjct: 594 WPKEAMNVQT 603
>ref|NP_006671.2| malic enzyme 3, NADP(+)-dependent, mitochondrial [Homo sapiens]
Length = 604
Score = 326 bits (836), Expect = 2e-89
Identities = 159/250 (63%), Positives = 198/250 (79%)
Frame = +3
Query: 6 KRRCPKEKAIKKIWLVDSKGLIVKGRAALTNXXXXXXXXXXXMKNLEAIVQDIKPTALIG 185
K PK +A +KIW+VDSKGLIVKGR+ L + + +LE +V+ +KPTA+IG
Sbjct: 354 KEGVPKAEATRKIWMVDSKGLIVKGRSHLNHEKEMFAQDHPEVNSLEEVVRLVKPTAIIG 413
Query: 186 VAAIGGAFSEQILKDMAAFNERPIIFALSNPTSKAECTAEQCYTLTQGRAIFASGSPFDP 365
VAAI GAF+EQIL+DMA+F+ERPIIFALSNPTSKAECTAE+CY +T+GR IFASGSPF
Sbjct: 414 VAAIAGAFTEQILRDMASFHERPIIFALSNPTSKAECTAEKCYRVTEGRGIFASGSPFKS 473
Query: 366 VTLPSGQTLYPGQGNNSYVFPGVALGVVACGLRHITDKIFLTTAEVIAQQVSDKHLEEGR 545
VTL G+T PGQGNN+YVFPGVALGV+A G+RHI D+IFL TAE IAQ+VS++HL +GR
Sbjct: 474 VTLEDGKTFIPGQGNNAYVFPGVALGVIAGGIRHIPDEIFLLTAEQIAQEVSEQHLSQGR 533
Query: 546 LYPPLNTIRDVSLKIAEKIVRDAYQEKTATIYPEPSNKEAFVRSQMYSTDYDQILPDGYS 725
LYPPL+TIRDVSL+IA K++ AY+ A+ YPEP +KEAFVRS +Y+ DYD D Y+
Sbjct: 534 LYPPLSTIRDVSLRIAIKVLDYAYKHNLASYYPEPKDKEAFVRSLVYTPDYDSFTLDSYT 593
Query: 726 WPEEAQKIQT 755
WP+EA +QT
Sbjct: 594 WPKEAMNVQT 603
>ref|NP_002387.1| malic enzyme 2, NAD(+)-dependent, mitochondrial [Homo sapiens]
Length = 584
Score = 246 bits (627), Expect = 3e-65
Identities = 117/243 (48%), Positives = 160/243 (65%), Gaps = 3/243 (1%)
Frame = +3
Query: 21 KEKAIKKIWLVDSKGLIVKGRAALTNXXX---XXXXXXXXMKNLEAIVQDIKPTALIGVA 191
+++A KKIW+ D GL+VKGR A + E V +KP+ +IGVA
Sbjct: 334 EQEAQKKIWMFDKYGLLVKGRKAKIDSYQEPFTHSAPESIPDTFEDAVNILKPSTIIGVA 393
Query: 192 AIGGAFSEQILKDMAAFNERPIIFALSNPTSKAECTAEQCYTLTQGRAIFASGSPFDPVT 371
G F+ +++ MA+ NERP+IFALSNPT++AECTAE+ YTLT+GR +FASGSPF PV
Sbjct: 394 GAGRLFTPDVIRAMASINERPVIFALSNPTAQAECTAEEAYTLTEGRCLFASGSPFGPVK 453
Query: 372 LPSGQTLYPGQGNNSYVFPGVALGVVACGLRHITDKIFLTTAEVIAQQVSDKHLEEGRLY 551
L G+ PGQGNN Y+FPGVAL V+ C RHI+D +FL A+ + Q++D+ L +GRLY
Sbjct: 454 LTDGRVFTPGQGNNVYIFPGVALAVILCNTRHISDSVFLEAAKALTSQLTDEELAQGRLY 513
Query: 552 PPLNTIRDVSLKIAEKIVRDAYQEKTATIYPEPSNKEAFVRSQMYSTDYDQILPDGYSWP 731
PPL I++VS+ IA K+ Y K A YPEP +K +V+ + + ++YD +LPD Y WP
Sbjct: 514 PPLANIQEVSINIAIKVTEYLYANKMAFRYPEPEDKAKYVKERTWRSEYDSLLPDVYEWP 573
Query: 732 EEA 740
E A
Sbjct: 574 ESA 576
Database: RefSeqHP
Posted date: Aug 2, 2006 12:57 AM
Number of letters in database: 17,774,539
Number of sequences in database: 39,411
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 37,990,044
Number of Sequences: 39411
Number of extensions: 893197
Number of successful extensions: 2217
Number of sequences better than 1.0e-05: 4
Number of HSP's better than 0.0 without gapping: 2026
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2216
length of database: 17,774,539
effective HSP length: 103
effective length of database: 13,715,206
effective search space used: 3689390414
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
Search to RefSeqMP
BLASTX 2.2.10 [Oct-19-2004]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20060611S-048550
(1120 letters)
Database: RefSeqMP
45,328 sequences; 21,768,885 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_001004682.1| PREDICTED: similar to NADP-dependent malic e... 411 e-115
Alignment gi|XP_001004683.1| PREDICTED: similar to NADP-dependent malic e... 411 e-115
Alignment gi|XP_001004685.1| PREDICTED: similar to NADP-dependent malic e... 411 e-115
Alignment gi|NP_032641.1| malic enzyme, supernatant [Mus musculus] 402 e-112
Alignment gi|XP_001004679.1| PREDICTED: similar to NADP-dependent malic e... 389 e-108
Alignment gi|NP_852072.1| malic enzyme 3, NADP(+)-dependent, mitochondria... 326 3e-89
Alignment gi|NP_663469.1| malic enzyme 2, NAD(+)-dependent, mitochondrial... 240 2e-63
Alignment gi|XP_001004303.1| PREDICTED: similar to NADP-dependent malic e... 117 3e-26
>ref|XP_001004682.1| PREDICTED: similar to NADP-dependent malic enzyme (NADP-ME) (Malic
enzyme 1) isoform 2 [Mus musculus]
Length = 258
Score = 411 bits (1057), Expect = e-115
Identities = 206/253 (81%), Positives = 222/253 (87%)
Frame = +3
Query: 6 KRRCPKEKAIKKIWLVDSKGLIVKGRAALTNXXXXXXXXXXXMKNLEAIVQDIKPTALIG 185
K KE A KKIWLVDSKGLIVKGRA+LT MKNLEAIVQ IKPTALIG
Sbjct: 5 KEGLSKENARKKIWLVDSKGLIVKGRASLTEEKEVFAHEHEEMKNLEAIVQKIKPTALIG 64
Query: 186 VAAIGGAFSEQILKDMAAFNERPIIFALSNPTSKAECTAEQCYTLTQGRAIFASGSPFDP 365
VAAIGGAF+EQILKDMAAFNERPIIFALSNPTSKAEC+AEQCY +T+GRAIFASGSPFDP
Sbjct: 65 VAAIGGAFTEQILKDMAAFNERPIIFALSNPTSKAECSAEQCYKVTKGRAIFASGSPFDP 124
Query: 366 VTLPSGQTLYPGQGNNSYVFPGVALGVVACGLRHITDKIFLTTAEVIAQQVSDKHLEEGR 545
VTLP G+TL+PGQGNNSYVFPGVALGVVACGLRHI DK+FLTTAEVI+QQVSDKHL+EGR
Sbjct: 125 VTLPDGRTLFPGQGNNSYVFPGVALGVVACGLRHIDDKVFLTTAEVISQQVSDKHLQEGR 184
Query: 546 LYPPLNTIRDVSLKIAEKIVRDAYQEKTATIYPEPSNKEAFVRSQMYSTDYDQILPDGYS 725
LYPPLNTIRDVSLKIA KIV+DAY+EK AT+YPEP NKE FV SQMYST+YDQILPD Y
Sbjct: 185 LYPPLNTIRDVSLKIAVKIVQDAYKEKMATVYPEPQNKEEFVSSQMYSTNYDQILPDCYP 244
Query: 726 WPEEAQKIQTKLD 764
WP E QKIQTK++
Sbjct: 245 WPAEVQKIQTKVN 257
>ref|XP_001004683.1| PREDICTED: similar to NADP-dependent malic enzyme (NADP-ME) (Malic
enzyme 1) isoform 3 [Mus musculus]
Length = 406
Score = 411 bits (1057), Expect = e-115
Identities = 206/253 (81%), Positives = 222/253 (87%)
Frame = +3
Query: 6 KRRCPKEKAIKKIWLVDSKGLIVKGRAALTNXXXXXXXXXXXMKNLEAIVQDIKPTALIG 185
K KE A KKIWLVDSKGLIVKGRA+LT MKNLEAIVQ IKPTALIG
Sbjct: 153 KEGLSKENARKKIWLVDSKGLIVKGRASLTEEKEVFAHEHEEMKNLEAIVQKIKPTALIG 212
Query: 186 VAAIGGAFSEQILKDMAAFNERPIIFALSNPTSKAECTAEQCYTLTQGRAIFASGSPFDP 365
VAAIGGAF+EQILKDMAAFNERPIIFALSNPTSKAEC+AEQCY +T+GRAIFASGSPFDP
Sbjct: 213 VAAIGGAFTEQILKDMAAFNERPIIFALSNPTSKAECSAEQCYKVTKGRAIFASGSPFDP 272
Query: 366 VTLPSGQTLYPGQGNNSYVFPGVALGVVACGLRHITDKIFLTTAEVIAQQVSDKHLEEGR 545
VTLP G+TL+PGQGNNSYVFPGVALGVVACGLRHI DK+FLTTAEVI+QQVSDKHL+EGR
Sbjct: 273 VTLPDGRTLFPGQGNNSYVFPGVALGVVACGLRHIDDKVFLTTAEVISQQVSDKHLQEGR 332
Query: 546 LYPPLNTIRDVSLKIAEKIVRDAYQEKTATIYPEPSNKEAFVRSQMYSTDYDQILPDGYS 725
LYPPLNTIRDVSLKIA KIV+DAY+EK AT+YPEP NKE FV SQMYST+YDQILPD Y
Sbjct: 333 LYPPLNTIRDVSLKIAVKIVQDAYKEKMATVYPEPQNKEEFVSSQMYSTNYDQILPDCYP 392
Query: 726 WPEEAQKIQTKLD 764
WP E QKIQTK++
Sbjct: 393 WPAEVQKIQTKVN 405
>ref|XP_001004685.1| PREDICTED: similar to NADP-dependent malic enzyme (NADP-ME) (Malic
enzyme 1) isoform 4 [Mus musculus]
Length = 552
Score = 411 bits (1057), Expect = e-115
Identities = 206/253 (81%), Positives = 222/253 (87%)
Frame = +3
Query: 6 KRRCPKEKAIKKIWLVDSKGLIVKGRAALTNXXXXXXXXXXXMKNLEAIVQDIKPTALIG 185
K KE A KKIWLVDSKGLIVKGRA+LT MKNLEAIVQ IKPTALIG
Sbjct: 299 KEGLSKENARKKIWLVDSKGLIVKGRASLTEEKEVFAHEHEEMKNLEAIVQKIKPTALIG 358
Query: 186 VAAIGGAFSEQILKDMAAFNERPIIFALSNPTSKAECTAEQCYTLTQGRAIFASGSPFDP 365
VAAIGGAF+EQILKDMAAFNERPIIFALSNPTSKAEC+AEQCY +T+GRAIFASGSPFDP
Sbjct: 359 VAAIGGAFTEQILKDMAAFNERPIIFALSNPTSKAECSAEQCYKVTKGRAIFASGSPFDP 418
Query: 366 VTLPSGQTLYPGQGNNSYVFPGVALGVVACGLRHITDKIFLTTAEVIAQQVSDKHLEEGR 545
VTLP G+TL+PGQGNNSYVFPGVALGVVACGLRHI DK+FLTTAEVI+QQVSDKHL+EGR
Sbjct: 419 VTLPDGRTLFPGQGNNSYVFPGVALGVVACGLRHIDDKVFLTTAEVISQQVSDKHLQEGR 478
Query: 546 LYPPLNTIRDVSLKIAEKIVRDAYQEKTATIYPEPSNKEAFVRSQMYSTDYDQILPDGYS 725
LYPPLNTIRDVSLKIA KIV+DAY+EK AT+YPEP NKE FV SQMYST+YDQILPD Y
Sbjct: 479 LYPPLNTIRDVSLKIAVKIVQDAYKEKMATVYPEPQNKEEFVSSQMYSTNYDQILPDCYP 538
Query: 726 WPEEAQKIQTKLD 764
WP E QKIQTK++
Sbjct: 539 WPAEVQKIQTKVN 551
>ref|NP_032641.1| malic enzyme, supernatant [Mus musculus]
Length = 572
Score = 402 bits (1034), Expect = e-112
Identities = 201/253 (79%), Positives = 220/253 (86%)
Frame = +3
Query: 6 KRRCPKEKAIKKIWLVDSKGLIVKGRAALTNXXXXXXXXXXXMKNLEAIVQDIKPTALIG 185
K KE A KKIWLVDSKGLIVKGRA+LT MKNLEAIVQ IKPTALIG
Sbjct: 319 KEGLSKENARKKIWLVDSKGLIVKGRASLTEEKEVFAHEHEEMKNLEAIVQKIKPTALIG 378
Query: 186 VAAIGGAFSEQILKDMAAFNERPIIFALSNPTSKAECTAEQCYTLTQGRAIFASGSPFDP 365
VAAIGGAF+EQILKDMAAFNERPIIFALS+PTSKAEC+A++CY +T+GRAIFASGSPFDP
Sbjct: 379 VAAIGGAFTEQILKDMAAFNERPIIFALSSPTSKAECSADECYKVTKGRAIFASGSPFDP 438
Query: 366 VTLPSGQTLYPGQGNNSYVFPGVALGVVACGLRHITDKIFLTTAEVIAQQVSDKHLEEGR 545
VTLP G+TL+PGQGNNSYVFPGVALGVVACGLRHI DK+FLTT EVI+QQVSDKHL+EGR
Sbjct: 439 VTLPDGRTLFPGQGNNSYVFPGVALGVVACGLRHIDDKVFLTTREVISQQVSDKHLQEGR 498
Query: 546 LYPPLNTIRDVSLKIAEKIVRDAYQEKTATIYPEPSNKEAFVRSQMYSTDYDQILPDGYS 725
LYPPLNTIR VSLKIA KIV+DAY+EK AT+YPEP NKE FV SQMYST+YDQILPD Y
Sbjct: 499 LYPPLNTIRGVSLKIAVKIVQDAYKEKMATVYPEPQNKEEFVSSQMYSTNYDQILPDCYP 558
Query: 726 WPEEAQKIQTKLD 764
WP E QKIQTK++
Sbjct: 559 WPAEVQKIQTKVN 571
>ref|XP_001004679.1| PREDICTED: similar to NADP-dependent malic enzyme (NADP-ME) (Malic
enzyme 1) isoform 1 [Mus musculus]
Length = 554
Score = 389 bits (998), Expect = e-108
Identities = 198/255 (77%), Positives = 215/255 (84%), Gaps = 2/255 (0%)
Frame = +3
Query: 6 KRRCPKEKAIKKIWLVDSKGLIVKGRAALTNXXXXXXXXX--XXMKNLEAIVQDIKPTAL 179
K KE A KKIWLVDSKGLIVK R +T NLEAIVQ IKPTAL
Sbjct: 299 KEGLSKENARKKIWLVDSKGLIVKVRKKVTTYLKPYTGAAPDSLHSNLEAIVQKIKPTAL 358
Query: 180 IGVAAIGGAFSEQILKDMAAFNERPIIFALSNPTSKAECTAEQCYTLTQGRAIFASGSPF 359
IGVAAIGGAF+EQILKDMAAFNERPIIFALSNPTSKAEC+AEQCY +T+GRAIFASGSPF
Sbjct: 359 IGVAAIGGAFTEQILKDMAAFNERPIIFALSNPTSKAECSAEQCYKVTKGRAIFASGSPF 418
Query: 360 DPVTLPSGQTLYPGQGNNSYVFPGVALGVVACGLRHITDKIFLTTAEVIAQQVSDKHLEE 539
DPVTLP G+TL+PGQGNNSYVFPGVALGVVACGLRHI DK+FLTTAEVI+QQVSDKHL+E
Sbjct: 419 DPVTLPDGRTLFPGQGNNSYVFPGVALGVVACGLRHIDDKVFLTTAEVISQQVSDKHLQE 478
Query: 540 GRLYPPLNTIRDVSLKIAEKIVRDAYQEKTATIYPEPSNKEAFVRSQMYSTDYDQILPDG 719
GRLYPPLNTIRDVSLKIA K+ + AY+EK AT+YPEP NKE FV SQMYST+YDQILPD
Sbjct: 479 GRLYPPLNTIRDVSLKIAVKVRQYAYKEKMATVYPEPQNKEEFVSSQMYSTNYDQILPDC 538
Query: 720 YSWPEEAQKIQTKLD 764
Y WP E QKIQTK++
Sbjct: 539 YPWPAEVQKIQTKVN 553
>ref|NP_852072.1| malic enzyme 3, NADP(+)-dependent, mitochondrial [Mus musculus]
Length = 604
Score = 326 bits (835), Expect = 3e-89
Identities = 159/249 (63%), Positives = 198/249 (79%)
Frame = +3
Query: 6 KRRCPKEKAIKKIWLVDSKGLIVKGRAALTNXXXXXXXXXXXMKNLEAIVQDIKPTALIG 185
K PK +AIKKIW+VDSKGLIVKGR+ L + + +LE +V+ +KPTA+IG
Sbjct: 354 KEGIPKTEAIKKIWMVDSKGLIVKGRSHLNHEKEMFAQDHPEVNSLEEVVRLVKPTAIIG 413
Query: 186 VAAIGGAFSEQILKDMAAFNERPIIFALSNPTSKAECTAEQCYTLTQGRAIFASGSPFDP 365
VAAI GAF+EQIL+DMA+F+ERPI+FALSNPTSKAECTAE+CY +T+GR IFASGSPF
Sbjct: 414 VAAIAGAFTEQILRDMASFHERPIVFALSNPTSKAECTAEKCYRVTEGRGIFASGSPFKS 473
Query: 366 VTLPSGQTLYPGQGNNSYVFPGVALGVVACGLRHITDKIFLTTAEVIAQQVSDKHLEEGR 545
VTL G+T PGQGNN+YVFPGVALGV+A G+RHI D+IFL TAE IAQ+VS++HL +GR
Sbjct: 474 VTLEDGRTFTPGQGNNAYVFPGVALGVIAGGIRHIPDEIFLLTAEQIAQEVSEQHLSQGR 533
Query: 546 LYPPLNTIRDVSLKIAEKIVRDAYQEKTATIYPEPSNKEAFVRSQMYSTDYDQILPDGYS 725
LYPPL+TIRDVSL+IA K++ AY+ A+ YPEP +KEAFV+S +Y+ DYD D YS
Sbjct: 534 LYPPLSTIRDVSLRIAVKVLDYAYKHNLASYYPEPKDKEAFVKSLIYTPDYDSFSLDTYS 593
Query: 726 WPEEAQKIQ 752
WP+EA +Q
Sbjct: 594 WPKEAMSVQ 602
>ref|NP_663469.1| malic enzyme 2, NAD(+)-dependent, mitochondrial [Mus musculus]
Length = 589
Score = 240 bits (613), Expect = 2e-63
Identities = 117/243 (48%), Positives = 158/243 (65%), Gaps = 3/243 (1%)
Frame = +3
Query: 21 KEKAIKKIWLVDSKGLIVKGRAALTNXXX---XXXXXXXXMKNLEAIVQDIKPTALIGVA 191
+E+A +KIW+ D GL+VKGR A + E V +KP+ +IGVA
Sbjct: 334 EEEAQRKIWMFDKSGLLVKGRTASIDSNQEPYAHAAPESIPATFEDAVNKLKPSVIIGVA 393
Query: 192 AIGGAFSEQILKDMAAFNERPIIFALSNPTSKAECTAEQCYTLTQGRAIFASGSPFDPVT 371
G F+ ++K MA+ NERPIIFALSNPT++AECTAE YTLT+GR +FASGSPF+PV
Sbjct: 394 GAGPLFTHGVIKAMASINERPIIFALSNPTAQAECTAEDAYTLTEGRCLFASGSPFEPVK 453
Query: 372 LPSGQTLYPGQGNNSYVFPGVALGVVACGLRHITDKIFLTTAEVIAQQVSDKHLEEGRLY 551
L G+ PGQGNN+Y+FPGVAL V+ C RHI+D +FL A+ + Q++D L +GRLY
Sbjct: 454 LQDGRVFTPGQGNNAYIFPGVALAVILCEARHISDTVFLEAAKALTTQLTDAELAQGRLY 513
Query: 552 PPLNTIRDVSLKIAEKIVRDAYQEKTATIYPEPSNKEAFVRSQMYSTDYDQILPDGYSWP 731
P L I++VS IA K+ Y K A YPEP +K +VR +++ ++Y +LPD Y WP
Sbjct: 514 PSLANIQEVSANIAIKLAEYLYANKMAFRYPEPEDKARYVRERIWRSNYVSLLPDVYDWP 573
Query: 732 EEA 740
E +
Sbjct: 574 ESS 576
>ref|XP_001004303.1| PREDICTED: similar to NADP-dependent malic enzyme (NADP-ME) (Malic
enzyme 1) [Mus musculus]
Length = 66
Score = 117 bits (292), Expect = 3e-26
Identities = 54/60 (90%), Positives = 58/60 (96%)
Frame = +3
Query: 327 GRAIFASGSPFDPVTLPSGQTLYPGQGNNSYVFPGVALGVVACGLRHITDKIFLTTAEVI 506
GRAIFASGSPFDPVTLP G+TL+PGQGNNSYVFPGVALGVVACGLRHI DK+FLTTAEV+
Sbjct: 7 GRAIFASGSPFDPVTLPDGRTLFPGQGNNSYVFPGVALGVVACGLRHIDDKVFLTTAEVL 66
Database: RefSeqMP
Posted date: Aug 2, 2006 12:58 AM
Number of letters in database: 21,768,885
Number of sequences in database: 45,328
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 46,081,206
Number of Sequences: 45328
Number of extensions: 1076009
Number of successful extensions: 2508
Number of sequences better than 1.0e-05: 8
Number of HSP's better than 0.0 without gapping: 2325
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2506
length of database: 21,768,885
effective HSP length: 105
effective length of database: 17,009,445
effective search space used: 4541521815
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)