BLASTX 2.2.10 [Oct-19-2004]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20060611S-051426
(952 letters)
Database: RefSeqSP
1040 sequences; 434,620 total letters
Searching...done
***** No hits found ******
Database: RefSeqSP
Posted date: Aug 1, 2006 7:14 PM
Number of letters in database: 434,620
Number of sequences in database: 1040
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 960,100
Number of Sequences: 1040
Number of extensions: 26011
Number of successful extensions: 89
Number of sequences better than 1.0e-05: 0
Number of HSP's better than 0.0 without gapping: 80
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 89
length of database: 434,620
effective HSP length: 77
effective length of database: 354,540
effective search space used: 84735060
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
Search to RefSeqBP
BLASTX 2.2.10 [Oct-19-2004]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20060611S-051426
(952 letters)
Database: RefSeqBP
33,508 sequences; 16,112,626 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_872914.1| PREDICTED: similar to cytochrome b, ascorbate d... 135 3e-38
Alignment gi|XP_613965.2| PREDICTED: similar to cytochrome b reductase 1 ... 119 4e-30
Alignment gi|NP_777262.1| cytochrome b-561 [Bos taurus] 79 3e-17
>ref|XP_872914.1| PREDICTED: similar to cytochrome b, ascorbate dependent 3 [Bos
taurus]
Length = 323
Score = 135 bits (340), Expect(2) = 3e-38
Identities = 61/76 (80%), Positives = 66/76 (86%)
Frame = +1
Query: 598 VLYSAASLAYRLPQSWVGPKLPWKLGHAAMHLMAFILTVLGLAGVFNSHNHEKIPNLYSL 777
+L ASL YRLPQSWVGP+LPWK GHAAMHL+AF+LTVLGL VF HNH KIP+LYSL
Sbjct: 138 LLSPTASLVYRLPQSWVGPRLPWKSGHAAMHLLAFLLTVLGLHAVFEFHNHAKIPHLYSL 197
Query: 778 HSWLGITTVFLFACQW 825
HSWLGITTVFLFACQW
Sbjct: 198 HSWLGITTVFLFACQW 213
Score = 42.0 bits (97), Expect(2) = 3e-38
Identities = 19/24 (79%), Positives = 20/24 (83%)
Frame = +2
Query: 845 FCCPWASVRLRSLLKPIHVLFGAS 916
F PWAS+ LRSLLKPIHV FGAS
Sbjct: 220 FLLPWASMWLRSLLKPIHVFFGAS 243
>ref|XP_613965.2| PREDICTED: similar to cytochrome b reductase 1 [Bos taurus]
Length = 424
Score = 119 bits (298), Expect(2) = 4e-30
Identities = 58/128 (45%), Positives = 81/128 (63%)
Frame = +1
Query: 439 GWFYLSALALFSLGSMCILSTIYWMRYWHEGFA*DGTILTFNWHPVLMVTGMVVLYSAAS 618
G+ L AL +G + ++ T+ W+ + EG DGT L FNWHPVL+VTG V + A
Sbjct: 147 GFLALLVSALL-VGFLSVIFTLIWVLHHREGLGWDGTALEFNWHPVLVVTGFVFILGIAI 205
Query: 619 LAYRLPQSWVGPKLPWKLGHAAMHLMAFILTVLGLAGVFNSHNHEKIPNLYSLHSWLGIT 798
+ YRLP +W KL K HA ++ +A IL ++ L VF+ HN +KIPN+YSLHSW+G+T
Sbjct: 206 IVYRLPWTWKCSKLLMKSIHAGLNTVAAILAIISLVAVFDFHNAKKIPNMYSLHSWVGLT 265
Query: 799 TVFLFACQ 822
V L+ Q
Sbjct: 266 AVILYILQ 273
Score = 30.8 bits (68), Expect(2) = 4e-30
Identities = 13/22 (59%), Positives = 15/22 (68%)
Frame = +2
Query: 845 FCCPWASVRLRSLLKPIHVLFG 910
F PWA + LR+LL PIHV G
Sbjct: 281 FLLPWAPLSLRALLMPIHVYSG 302
>ref|NP_777262.1| cytochrome b-561 [Bos taurus]
Length = 273
Score = 79.0 bits (193), Expect(2) = 3e-17
Identities = 43/117 (36%), Positives = 63/117 (53%)
Frame = +1
Query: 475 LGSMCILSTIYWMRYWHEGFA*DGTILTFNWHPVLMVTGMVVLYSAASLAYRLPQSWVGP 654
LG + + T W+ + G A + L FN HP+ M+ G+V L A L YR+ ++
Sbjct: 45 LGLIVVAMTGAWLGMYRGGIAWESA-LQFNVHPLCMIIGLVFLQGDALLVYRVFRNEA-- 101
Query: 655 KLPWKLGHAAMHLMAFILTVLGLAGVFNSHNHEKIPNLYSLHSWLGITTVFLFACQW 825
K K+ H +H+ AF++ ++GL VF H + +LYSLHSW GI LF QW
Sbjct: 102 KRTTKVLHGLLHVFAFVIALVGLVAVFEHHRKKGYADLYSLHSWCGILVFALFFAQW 158
Score = 28.1 bits (61), Expect(2) = 3e-17
Identities = 14/27 (51%), Positives = 16/27 (59%)
Frame = +2
Query: 845 FCCPWASVRLRSLLKPIHVLFGASFSL 925
F P AS LRS +P HV FGA+ L
Sbjct: 165 FLFPGASFSLRSRYRPQHVFFGAAIFL 191
Database: RefSeqBP
Posted date: Aug 1, 2006 7:14 PM
Number of letters in database: 16,112,626
Number of sequences in database: 33,508
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 36,288,315
Number of Sequences: 33508
Number of extensions: 1045017
Number of successful extensions: 5373
Number of sequences better than 1.0e-05: 3
Number of HSP's better than 0.0 without gapping: 4188
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5355
length of database: 16,112,626
effective HSP length: 101
effective length of database: 12,728,318
effective search space used: 2736588370
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
Search to RefSeqHP
BLASTX 2.2.10 [Oct-19-2004]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20060611S-051426
(952 letters)
Database: RefSeqHP
39,411 sequences; 17,774,539 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_705839.2| cytochrome b, ascorbate dependent 3 [Homo sapiens] 213 5e-61
Alignment gi|NP_079119.2| cytochrome b reductase 1 [Homo sapiens] 108 3e-26
Alignment gi|NP_001017917.1| cytochrome b-561 isoform 1 [Homo sapiens] 75 6e-16
Alignment gi|NP_001017918.1| cytochrome b-561 isoform 2 [Homo sapiens] 75 6e-16
Alignment gi|NP_001906.3| cytochrome b-561 isoform 1 [Homo sapiens] 75 6e-16
Alignment gi|NP_001017916.1| cytochrome b-561 isoform 1 [Homo sapiens] 75 6e-16
>ref|NP_705839.2| cytochrome b, ascorbate dependent 3 [Homo sapiens]
Length = 242
Score = 213 bits (541), Expect(2) = 5e-61
Identities = 99/132 (75%), Positives = 106/132 (80%)
Frame = +1
Query: 430 MAVGWFYLSALALFSLGSMCILSTIYWMRYWHEGFA*DGTILTFNWHPVLMVTGMVVLYS 609
M G FYLS L L SLGSMCIL TIYWM+YW GFA +G+I FNWHPVLMV GMVV Y
Sbjct: 1 MVSGRFYLSCLLLGSLGSMCILFTIYWMQYWRGGFAWNGSIYMFNWHPVLMVAGMVVFYG 60
Query: 610 AASLAYRLPQSWVGPKLPWKLGHAAMHLMAFILTVLGLAGVFNSHNHEKIPNLYSLHSWL 789
ASL YRLPQSWVGPKLPWKL HAA+HLMAF+LTV+GL VF HNH + NLYSLHSWL
Sbjct: 61 GASLVYRLPQSWVGPKLPWKLLHAALHLMAFVLTVVGLVAVFTFHNHGRTANLYSLHSWL 120
Query: 790 GITTVFLFACQW 825
G TTVFLFACQW
Sbjct: 121 GTTTVFLFACQW 132
Score = 40.8 bits (94), Expect(2) = 5e-61
Identities = 18/24 (75%), Positives = 20/24 (83%)
Frame = +2
Query: 845 FCCPWASVRLRSLLKPIHVLFGAS 916
F PWAS+ LRSLLKPIHV FGA+
Sbjct: 139 FLLPWASMWLRSLLKPIHVFFGAA 162
>ref|NP_079119.2| cytochrome b reductase 1 [Homo sapiens]
Length = 286
Score = 108 bits (269), Expect(2) = 3e-26
Identities = 48/116 (41%), Positives = 71/116 (61%)
Frame = +1
Query: 475 LGSMCILSTIYWMRYWHEGFA*DGTILTFNWHPVLMVTGMVVLYSAASLAYRLPQSWVGP 654
+G + ++ + W+ ++ EG DG+ L FNWHPVLMVTG V + A + YRLP +W
Sbjct: 19 VGFLSVIFALVWVLHYREGLGWDGSALEFNWHPVLMVTGFVFIQGIAIIVYRLPWTWKCS 78
Query: 655 KLPWKLGHAAMHLMAFILTVLGLAGVFNSHNHEKIPNLYSLHSWLGITTVFLFACQ 822
KL K HA ++ +A IL ++ + VF +HN I N+YSLHSW+G+ V + Q
Sbjct: 79 KLLMKSIHAGLNAVAAILAIISVVAVFENHNVNNIANMYSLHSWVGLIAVICYLLQ 134
Score = 29.3 bits (64), Expect(2) = 3e-26
Identities = 12/22 (54%), Positives = 14/22 (63%)
Frame = +2
Query: 845 FCCPWASVRLRSLLKPIHVLFG 910
F PWA + LR+ L PIHV G
Sbjct: 142 FLLPWAPLSLRAFLMPIHVYSG 163
>ref|NP_001017917.1| cytochrome b-561 isoform 1 [Homo sapiens]
Length = 251
Score = 74.7 bits (182), Expect(2) = 6e-16
Identities = 41/117 (35%), Positives = 62/117 (52%)
Frame = +1
Query: 475 LGSMCILSTIYWMRYWHEGFA*DGTILTFNWHPVLMVTGMVVLYSAASLAYRLPQSWVGP 654
LG + T W+ + G A + L FN HP+ MV G++ L A L YR+ ++
Sbjct: 23 LGLTLVAMTGAWLGLYRGGIAWESD-LQFNAHPLCMVIGLIFLQGNALLVYRVFRNEA-- 79
Query: 655 KLPWKLGHAAMHLMAFILTVLGLAGVFNSHNHEKIPNLYSLHSWLGITTVFLFACQW 825
K K+ H +H+ A ++ ++GL VF+ H + +LYSLHSW GI L+ QW
Sbjct: 80 KRTTKVLHGLLHIFALVIALVGLVAVFDYHRKKGYADLYSLHSWCGILVFVLYFVQW 136
Score = 27.7 bits (60), Expect(2) = 6e-16
Identities = 13/27 (48%), Positives = 16/27 (59%)
Frame = +2
Query: 845 FCCPWASVRLRSLLKPIHVLFGASFSL 925
F P AS LRS +P H+ FGA+ L
Sbjct: 143 FLFPGASFSLRSRYRPQHIFFGATIFL 169
>ref|NP_001017918.1| cytochrome b-561 isoform 2 [Homo sapiens]
Length = 251
Score = 74.7 bits (182), Expect(2) = 6e-16
Identities = 41/117 (35%), Positives = 62/117 (52%)
Frame = +1
Query: 475 LGSMCILSTIYWMRYWHEGFA*DGTILTFNWHPVLMVTGMVVLYSAASLAYRLPQSWVGP 654
LG + T W+ + G A + L FN HP+ MV G++ L A L YR+ ++
Sbjct: 23 LGLTLVAMTGAWLGLYRGGIAWESD-LQFNAHPLCMVIGLIFLQGNALLVYRVFRNEA-- 79
Query: 655 KLPWKLGHAAMHLMAFILTVLGLAGVFNSHNHEKIPNLYSLHSWLGITTVFLFACQW 825
K K+ H +H+ A ++ ++GL VF+ H + +LYSLHSW GI L+ QW
Sbjct: 80 KRTTKVLHGLLHIFALVIALVGLVAVFDYHRKKGYADLYSLHSWCGILVFVLYFVQW 136
Score = 27.7 bits (60), Expect(2) = 6e-16
Identities = 13/27 (48%), Positives = 16/27 (59%)
Frame = +2
Query: 845 FCCPWASVRLRSLLKPIHVLFGASFSL 925
F P AS LRS +P H+ FGA+ L
Sbjct: 143 FLFPGASFSLRSRYRPQHIFFGATIFL 169
>ref|NP_001906.3| cytochrome b-561 isoform 1 [Homo sapiens]
Length = 251
Score = 74.7 bits (182), Expect(2) = 6e-16
Identities = 41/117 (35%), Positives = 62/117 (52%)
Frame = +1
Query: 475 LGSMCILSTIYWMRYWHEGFA*DGTILTFNWHPVLMVTGMVVLYSAASLAYRLPQSWVGP 654
LG + T W+ + G A + L FN HP+ MV G++ L A L YR+ ++
Sbjct: 23 LGLTLVAMTGAWLGLYRGGIAWESD-LQFNAHPLCMVIGLIFLQGNALLVYRVFRNEA-- 79
Query: 655 KLPWKLGHAAMHLMAFILTVLGLAGVFNSHNHEKIPNLYSLHSWLGITTVFLFACQW 825
K K+ H +H+ A ++ ++GL VF+ H + +LYSLHSW GI L+ QW
Sbjct: 80 KRTTKVLHGLLHIFALVIALVGLVAVFDYHRKKGYADLYSLHSWCGILVFVLYFVQW 136
Score = 27.7 bits (60), Expect(2) = 6e-16
Identities = 13/27 (48%), Positives = 16/27 (59%)
Frame = +2
Query: 845 FCCPWASVRLRSLLKPIHVLFGASFSL 925
F P AS LRS +P H+ FGA+ L
Sbjct: 143 FLFPGASFSLRSRYRPQHIFFGATIFL 169
>ref|NP_001017916.1| cytochrome b-561 isoform 1 [Homo sapiens]
Length = 251
Score = 74.7 bits (182), Expect(2) = 6e-16
Identities = 41/117 (35%), Positives = 62/117 (52%)
Frame = +1
Query: 475 LGSMCILSTIYWMRYWHEGFA*DGTILTFNWHPVLMVTGMVVLYSAASLAYRLPQSWVGP 654
LG + T W+ + G A + L FN HP+ MV G++ L A L YR+ ++
Sbjct: 23 LGLTLVAMTGAWLGLYRGGIAWESD-LQFNAHPLCMVIGLIFLQGNALLVYRVFRNEA-- 79
Query: 655 KLPWKLGHAAMHLMAFILTVLGLAGVFNSHNHEKIPNLYSLHSWLGITTVFLFACQW 825
K K+ H +H+ A ++ ++GL VF+ H + +LYSLHSW GI L+ QW
Sbjct: 80 KRTTKVLHGLLHIFALVIALVGLVAVFDYHRKKGYADLYSLHSWCGILVFVLYFVQW 136
Score = 27.7 bits (60), Expect(2) = 6e-16
Identities = 13/27 (48%), Positives = 16/27 (59%)
Frame = +2
Query: 845 FCCPWASVRLRSLLKPIHVLFGASFSL 925
F P AS LRS +P H+ FGA+ L
Sbjct: 143 FLFPGASFSLRSRYRPQHIFFGATIFL 169
Database: RefSeqHP
Posted date: Aug 2, 2006 12:57 AM
Number of letters in database: 17,774,539
Number of sequences in database: 39,411
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 41,546,544
Number of Sequences: 39411
Number of extensions: 1243441
Number of successful extensions: 6176
Number of sequences better than 1.0e-05: 6
Number of HSP's better than 0.0 without gapping: 4733
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6161
length of database: 17,774,539
effective HSP length: 102
effective length of database: 13,754,617
effective search space used: 2943488038
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
Search to RefSeqCP
BLASTX 2.2.10 [Oct-19-2004]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20060611S-051426
(952 letters)
Database: RefSeqCP
33,732 sequences; 19,266,565 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_540920.2| PREDICTED: similar to cytochrome b, ascorbate d... 215 8e-61
Alignment gi|XP_535960.2| PREDICTED: similar to cytochrome b reductase 1 ... 118 4e-29
Alignment gi|XP_853258.1| PREDICTED: similar to Cytochrome b561 (Cytochro... 79 7e-17
>ref|XP_540920.2| PREDICTED: similar to cytochrome b, ascorbate dependent 3 protein
[Canis familiaris]
Length = 242
Score = 215 bits (547), Expect(2) = 8e-61
Identities = 98/132 (74%), Positives = 109/132 (82%)
Frame = +1
Query: 430 MAVGWFYLSALALFSLGSMCILSTIYWMRYWHEGFA*DGTILTFNWHPVLMVTGMVVLYS 609
MAVGWFYLS +L+ LG MCI+ TIYW++ WH GFA DGT+L FN+HPV MV G VVLYS
Sbjct: 1 MAVGWFYLSFYSLWFLGLMCIILTIYWVQLWHGGFAWDGTLLMFNYHPVFMVVGSVVLYS 60
Query: 610 AASLAYRLPQSWVGPKLPWKLGHAAMHLMAFILTVLGLAGVFNSHNHEKIPNLYSLHSWL 789
AASL YRLPQSWVGPKLPWK+GHA +HL+AFILTVLGL VF H +I NLYSLHSWL
Sbjct: 61 AASLLYRLPQSWVGPKLPWKIGHAMLHLLAFILTVLGLVAVFQLHRRSRITNLYSLHSWL 120
Query: 790 GITTVFLFACQW 825
GI TVFLFACQW
Sbjct: 121 GIVTVFLFACQW 132
Score = 38.1 bits (87), Expect(2) = 8e-61
Identities = 17/22 (77%), Positives = 17/22 (77%)
Frame = +2
Query: 845 FCCPWASVRLRSLLKPIHVLFG 910
F PW SV LRSLLKPIHV FG
Sbjct: 139 FLLPWMSVWLRSLLKPIHVFFG 160
>ref|XP_535960.2| PREDICTED: similar to cytochrome b reductase 1 [Canis familiaris]
Length = 280
Score = 118 bits (296), Expect(2) = 4e-29
Identities = 53/116 (45%), Positives = 74/116 (63%)
Frame = +1
Query: 475 LGSMCILSTIYWMRYWHEGFA*DGTILTFNWHPVLMVTGMVVLYSAASLAYRLPQSWVGP 654
+G + ++ ++ W+ ++ EG DGT L FNWHPV MVTG V + A + YRLP +W
Sbjct: 17 VGFLAVVFSLVWVLHYREGLGWDGTALEFNWHPVFMVTGFVFIQGIAIIVYRLPWTWKCS 76
Query: 655 KLPWKLGHAAMHLMAFILTVLGLAGVFNSHNHEKIPNLYSLHSWLGITTVFLFACQ 822
KL K HA +H +A IL ++ L VF+ HN IPN+YSLHSW+G+T V L+ Q
Sbjct: 77 KLLMKSIHAGLHTVAAILVIISLVSVFDYHNAGNIPNMYSLHSWVGLTVVILYILQ 132
Score = 28.5 bits (62), Expect(2) = 4e-29
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = +2
Query: 845 FCCPWASVRLRSLLKPIHVLFG 910
F PWA + LR+L+ P+HV G
Sbjct: 140 FLLPWAPLSLRALVMPMHVYSG 161
>ref|XP_853258.1| PREDICTED: similar to Cytochrome b561 (Cytochrome b-561) [Canis
familiaris]
Length = 252
Score = 78.6 bits (192), Expect(2) = 7e-17
Identities = 43/117 (36%), Positives = 64/117 (54%)
Frame = +1
Query: 475 LGSMCILSTIYWMRYWHEGFA*DGTILTFNWHPVLMVTGMVVLYSAASLAYRLPQSWVGP 654
LG + T W+ + G A +G L FN HP+ MV G++ L A L YR+ ++
Sbjct: 24 LGLTVVAMTGAWLGLYRGGIAWEGA-LQFNVHPLCMVIGLIFLQGDALLVYRVFRNEA-- 80
Query: 655 KLPWKLGHAAMHLMAFILTVLGLAGVFNSHNHEKIPNLYSLHSWLGITTVFLFACQW 825
K K+ H +H++A I+ ++GL VF+ H + +LYSLHSW GI L+ QW
Sbjct: 81 KRTTKVLHGLLHVLALIIALVGLVAVFDYHRQKGYADLYSLHSWCGILVFVLYFMQW 137
Score = 27.3 bits (59), Expect(2) = 7e-17
Identities = 13/24 (54%), Positives = 15/24 (62%)
Frame = +2
Query: 845 FCCPWASVRLRSLLKPIHVLFGAS 916
F P AS LRS +P HV FGA+
Sbjct: 144 FLFPGASFSLRSRYRPQHVFFGAT 167
Database: RefSeqCP
Posted date: Aug 1, 2006 9:25 PM
Number of letters in database: 19,266,565
Number of sequences in database: 33,732
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 42,469,585
Number of Sequences: 33732
Number of extensions: 1222616
Number of successful extensions: 5960
Number of sequences better than 1.0e-05: 3
Number of HSP's better than 0.0 without gapping: 4678
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5929
length of database: 19,266,565
effective HSP length: 103
effective length of database: 15,792,169
effective search space used: 3363731997
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
Search to RefSeqMP
BLASTX 2.2.10 [Oct-19-2004]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20060611S-051426
(952 letters)
Database: RefSeqMP
45,328 sequences; 21,768,885 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_958739.1| cytochrome b, ascorbate dependent 3 protein [Mu... 216 3e-61
Alignment gi|XP_998352.1| PREDICTED: similar to cytochrome b reductase 1 ... 107 2e-25
Alignment gi|XP_915659.2| PREDICTED: cytochrome b reductase 1 [Mus musculus] 107 2e-25
Alignment gi|XP_130253.5| PREDICTED: similar to cytochrome b reductase 1 ... 107 2e-25
Alignment gi|NP_031831.2| cytochrome b-561 [Mus musculus] 78 6e-17
>ref|NP_958739.1| cytochrome b, ascorbate dependent 3 protein [Mus musculus]
Length = 242
Score = 216 bits (550), Expect(2) = 3e-61
Identities = 98/132 (74%), Positives = 108/132 (81%)
Frame = +1
Query: 430 MAVGWFYLSALALFSLGSMCILSTIYWMRYWHEGFA*DGTILTFNWHPVLMVTGMVVLYS 609
MA GWFYLS + L SLGSMCIL T YWM+YW GFA DGT+L FNWHPVLMV GMVVLY
Sbjct: 1 MASGWFYLSCMVLGSLGSMCILFTAYWMQYWRGGFAWDGTVLMFNWHPVLMVAGMVVLYG 60
Query: 610 AASLAYRLPQSWVGPKLPWKLGHAAMHLMAFILTVLGLAGVFNSHNHEKIPNLYSLHSWL 789
AASL YRLP SWVGP+LPWK+ HAA+HL+AF TV+GL VF HNH +I +LYSLHSWL
Sbjct: 61 AASLVYRLPSSWVGPRLPWKVLHAALHLLAFTCTVVGLIAVFRFHNHSRIAHLYSLHSWL 120
Query: 790 GITTVFLFACQW 825
GITTV LFACQW
Sbjct: 121 GITTVVLFACQW 132
Score = 38.5 bits (88), Expect(2) = 3e-61
Identities = 17/23 (73%), Positives = 18/23 (78%)
Frame = +2
Query: 845 FCCPWASVRLRSLLKPIHVLFGA 913
F PWAS LRSLLKP+HV FGA
Sbjct: 139 FLLPWASQWLRSLLKPLHVFFGA 161
>ref|XP_998352.1| PREDICTED: similar to cytochrome b reductase 1 (predicted) [Mus
musculus]
Length = 442
Score = 107 bits (266), Expect(2) = 2e-25
Identities = 47/116 (40%), Positives = 74/116 (63%)
Frame = +1
Query: 475 LGSMCILSTIYWMRYWHEGFA*DGTILTFNWHPVLMVTGMVVLYSAASLAYRLPQSWVGP 654
+G + ++ + W+ ++ EG +G+ L FNWHPVL VTG V + A + YRLP +W
Sbjct: 171 VGFLSVIFVLIWVLHFREGLGWNGSGLEFNWHPVLAVTGFVFIQGIAIIVYRLPWTWKCS 230
Query: 655 KLPWKLGHAAMHLMAFILTVLGLAGVFNSHNHEKIPNLYSLHSWLGITTVFLFACQ 822
KL K HA ++ +A IL ++ + VF HN +K+P++YSLHSW+G+T + L+ Q
Sbjct: 231 KLLMKSIHAGLNAVAAILAIISVVAVFEYHNVQKVPHMYSLHSWVGLTALILYIQQ 286
Score = 27.7 bits (60), Expect(2) = 2e-25
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = +2
Query: 845 FCCPWASVRLRSLLKPIHVLFG 910
F PWA LR+++ PIHV G
Sbjct: 294 FLLPWAPPSLRAIVMPIHVYSG 315
>ref|XP_915659.2| PREDICTED: cytochrome b reductase 1 [Mus musculus]
Length = 413
Score = 107 bits (266), Expect(2) = 2e-25
Identities = 47/116 (40%), Positives = 74/116 (63%)
Frame = +1
Query: 475 LGSMCILSTIYWMRYWHEGFA*DGTILTFNWHPVLMVTGMVVLYSAASLAYRLPQSWVGP 654
+G + ++ + W+ ++ EG +G+ L FNWHPVL VTG V + A + YRLP +W
Sbjct: 142 VGFLSVIFVLIWVLHFREGLGWNGSGLEFNWHPVLAVTGFVFIQGIAIIVYRLPWTWKCS 201
Query: 655 KLPWKLGHAAMHLMAFILTVLGLAGVFNSHNHEKIPNLYSLHSWLGITTVFLFACQ 822
KL K HA ++ +A IL ++ + VF HN +K+P++YSLHSW+G+T + L+ Q
Sbjct: 202 KLLMKSIHAGLNAVAAILAIISVVAVFEYHNVQKVPHMYSLHSWVGLTALILYIQQ 257
Score = 27.7 bits (60), Expect(2) = 2e-25
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = +2
Query: 845 FCCPWASVRLRSLLKPIHVLFG 910
F PWA LR+++ PIHV G
Sbjct: 265 FLLPWAPPSLRAIVMPIHVYSG 286
>ref|XP_130253.5| PREDICTED: similar to cytochrome b reductase 1 (predicted) [Mus
musculus]
Length = 413
Score = 107 bits (266), Expect(2) = 2e-25
Identities = 47/116 (40%), Positives = 74/116 (63%)
Frame = +1
Query: 475 LGSMCILSTIYWMRYWHEGFA*DGTILTFNWHPVLMVTGMVVLYSAASLAYRLPQSWVGP 654
+G + ++ + W+ ++ EG +G+ L FNWHPVL VTG V + A + YRLP +W
Sbjct: 142 VGFLSVIFVLIWVLHFREGLGWNGSGLEFNWHPVLAVTGFVFIQGIAIIVYRLPWTWKCS 201
Query: 655 KLPWKLGHAAMHLMAFILTVLGLAGVFNSHNHEKIPNLYSLHSWLGITTVFLFACQ 822
KL K HA ++ +A IL ++ + VF HN +K+P++YSLHSW+G+T + L+ Q
Sbjct: 202 KLLMKSIHAGLNAVAAILAIISVVAVFEYHNVQKVPHMYSLHSWVGLTALILYIQQ 257
Score = 27.7 bits (60), Expect(2) = 2e-25
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = +2
Query: 845 FCCPWASVRLRSLLKPIHVLFG 910
F PWA LR+++ PIHV G
Sbjct: 265 FLLPWAPPSLRAIVMPIHVYSG 286
>ref|NP_031831.2| cytochrome b-561 [Mus musculus]
Length = 250
Score = 78.2 bits (191), Expect(2) = 6e-17
Identities = 44/117 (37%), Positives = 63/117 (53%)
Frame = +1
Query: 475 LGSMCILSTIYWMRYWHEGFA*DGTILTFNWHPVLMVTGMVVLYSAASLAYRLPQSWVGP 654
LG + T W+ + G A + + L FN HP+ MV GM+ L A L YR+ +
Sbjct: 22 LGLTVVAVTGAWLGLYRGGIAWESS-LQFNVHPLCMVIGMIFLQGDALLVYRVFRREA-- 78
Query: 655 KLPWKLGHAAMHLMAFILTVLGLAGVFNSHNHEKIPNLYSLHSWLGITTVFLFACQW 825
K K+ H +H+ AFI+ ++GL VF+ H + +LYSLHSW GI L+ QW
Sbjct: 79 KRTTKILHGLLHVFAFIIALVGLVAVFDYHKKKGYADLYSLHSWCGILVFVLYFVQW 135
Score = 28.1 bits (61), Expect(2) = 6e-17
Identities = 13/28 (46%), Positives = 17/28 (60%)
Frame = +2
Query: 845 FCCPWASVRLRSLLKPIHVLFGASFSLW 928
F P AS LRS +P H+ FGA+ L+
Sbjct: 142 FLFPGASFSLRSRYRPQHIFFGATIFLF 169
Database: RefSeqMP
Posted date: Aug 2, 2006 12:58 AM
Number of letters in database: 21,768,885
Number of sequences in database: 45,328
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 48,516,512
Number of Sequences: 45328
Number of extensions: 1375692
Number of successful extensions: 6879
Number of sequences better than 1.0e-05: 5
Number of HSP's better than 0.0 without gapping: 5376
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6844
length of database: 21,768,885
effective HSP length: 103
effective length of database: 17,100,101
effective search space used: 3642321513
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)