BLASTX 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= 20060611S-056548 (1304 letters) Database: RefSeqSP 1040 sequences; 434,620 total letters Searching...done ***** No hits found ****** Database: RefSeqSP Posted date: Aug 1, 2006 7:14 PM Number of letters in database: 434,620 Number of sequences in database: 1040 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 1,210,427 Number of Sequences: 1040 Number of extensions: 31282 Number of successful extensions: 97 Number of sequences better than 1.0e-05: 0 Number of HSP's better than 0.0 without gapping: 88 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 97 length of database: 434,620 effective HSP length: 79 effective length of database: 352,460 effective search space used: 125123300 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
Search to RefSeqBP
BLASTX 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= 20060611S-056548 (1304 letters) Database: RefSeqBP 33,508 sequences; 16,112,626 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Alignment gi|XP_612082.2| PREDICTED: similar to LanC-like protein 1 (40 k... 225 5e-59 Alignment gi|XP_584526.2| PREDICTED: similar to CG11136-PA [Bos taurus] 134 2e-31 Alignment gi|XP_614740.2| PREDICTED: similar to LanC-like protein 2 (Test... 115 6e-26 Alignment gi|XP_597454.2| PREDICTED: similar to LanC lantibiotic syntheta... 84 2e-16 >ref|XP_612082.2| PREDICTED: similar to LanC-like protein 1 (40 kDa erythrocyte membrane protein) (p40) [Bos taurus] Length = 399 Score = 225 bits (574), Expect = 5e-59 Identities = 109/193 (56%), Positives = 139/193 (72%), Gaps = 4/193 (2%) Frame = +3 Query: 540 KQIPRTRTHCSCHSIFTTAKYLPTKRNFRQETPLMYDWYRDYYVGAAHGLSRIYYYLMHP 719 ++IP++ C ++ T+ + L KR F +TPLMY+WY++YYVGAAHGL+ IYYYLM P Sbjct: 172 EKIPQSHIQQICETVLTSGEDLARKRRFTGKTPLMYEWYQEYYVGAAHGLAGIYYYLMQP 231 Query: 720 SLQVSHAKLQSLVKPSVDYVCQLKFPFGNYPPCVDNTPDLLVHWCHGSPGVIYMLIQAYK 899 SLQVSHAKL +LVKPSVDYVCQLKFP GNYPPCVD++ DLL+HWCHG+PGVIYML QAYK Sbjct: 232 SLQVSHAKLHNLVKPSVDYVCQLKFPSGNYPPCVDDSRDLLIHWCHGAPGVIYMLTQAYK 291 Query: 900 VFREDRYLNDAYQCANVIWXXXXXXXXXXXCPALPGTP-SLLTLFT-SRRMKNLYGLVIF 1073 VF+E+RYLNDAYQCA+VIW C G + L+L++ ++ K LY F Sbjct: 292 VFKEERYLNDAYQCADVIWQYGLLKKGYGLCHGTAGNAYAFLSLYSLTQDAKYLYRACKF 351 Query: 1074 RGGLI--MENGCK 1106 + E+GC+ Sbjct: 352 AEWCLDYGEHGCR 364 >ref|XP_584526.2| PREDICTED: similar to CG11136-PA [Bos taurus] Length = 328 Score = 134 bits (336), Expect = 2e-31 Identities = 69/135 (51%), Positives = 79/135 (58%) Frame = +2 Query: 131 VWTQXXXXXXXXXXXXXXDCPEACVCAPGGQANCSWRALPAVPGGLRKSVRILLLDHNRV 310 VWTQ DCPEACVCAPGGQANCS RALPAVPGGL + VR+LLL+HNRV Sbjct: 26 VWTQAPAAAASWGTPGALDCPEACVCAPGGQANCSERALPAVPGGLNRRVRVLLLNHNRV 85 Query: 311 XXXXXXXXXXXXXXXXXXXHENRLRWMHSWAFWGLGTLQHLYLSANQLEVLVPSTCVPQQ 490 EN LRW+H+ AFWGLG L+ L LSANQLE L+P T P + Sbjct: 86 HALPPGAFVDAGALLRLDLRENGLRWVHARAFWGLGALEQLDLSANQLEALLPGTFAPLR 145 Query: 491 CAALPLAGIVNSRFA 535 AL + +R A Sbjct: 146 --ALRALSLAENRLA 158 >ref|XP_614740.2| PREDICTED: similar to LanC-like protein 2 (Testis-specific adriamycin sensitivity protein), partial [Bos taurus] Length = 331 Score = 115 bits (289), Expect = 6e-26 Identities = 51/108 (47%), Positives = 72/108 (66%) Frame = +3 Query: 576 HSIFTTAKYLPTKRNFRQETPLMYDWYRDYYVGAAHGLSRIYYYLMHPSLQVSHAKLQSL 755 ++I + K L + + PL+Y W+R YVGAAHG++ IYY LM P+ +V L + Sbjct: 224 NAIIESGKALSKEEKKVERCPLLYQWHRKQYVGAAHGMAGIYYMLMQPAAKVDQETLTEM 283 Query: 756 VKPSVDYVCQLKFPFGNYPPCVDNTPDLLVHWCHGSPGVIYMLIQAYK 899 VKPS+DY+ +F GNYP + N D LVHWCHG+PGVI++L+QA+K Sbjct: 284 VKPSIDYMRHKRFRSGNYPSSLSNETDRLVHWCHGAPGVIHVLMQAHK 331 >ref|XP_597454.2| PREDICTED: similar to LanC lantibiotic synthetase component C-like 3 [Bos taurus] Length = 244 Score = 84.0 bits (206), Expect = 2e-16 Identities = 52/157 (33%), Positives = 80/157 (50%), Gaps = 5/157 (3%) Frame = +3 Query: 573 CHSIFTTAKYLPTKRNFRQETPLMYDWYRDYYVGAAHGLSRIYYYLM--HPSLQVSHAKL 746 C +I + K K+ R+ PLMY +Y Y+GAAHGLS I L+ H L+ S Sbjct: 26 CQAILDSGKQYAMKK--RKPFPLMYSYYGTEYLGAAHGLSSILQMLLSYHEHLKPSD--- 80 Query: 747 QSLVKPSVDYVCQLKFPFGNYPPCVDNTPDL---LVHWCHGSPGVIYMLIQAYKVFREDR 917 Q LV SVD++ + + N+PP + + LVHWCHG+PG+ Y+ +AY V ++ + Sbjct: 81 QELVWQSVDFLMEQEQNC-NWPPELGEAIERENELVHWCHGAPGIAYLFAKAYLVSKKPQ 139 Query: 918 YLNDAYQCANVIWXXXXXXXXXXXCPALPGTPSLLTL 1028 YL+ +C + W C + G+ + L Sbjct: 140 YLDTCIRCGELTWQKGLLKKGPGICHGVAGSAYVFLL 176 Database: RefSeqBP Posted date: Aug 1, 2006 7:14 PM Number of letters in database: 16,112,626 Number of sequences in database: 33,508 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 45,549,784 Number of Sequences: 33508 Number of extensions: 1204561 Number of successful extensions: 4253 Number of sequences better than 1.0e-05: 4 Number of HSP's better than 0.0 without gapping: 3539 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4220 length of database: 16,112,626 effective HSP length: 104 effective length of database: 12,627,794 effective search space used: 4167172020 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
Search to RefSeqCP
BLASTX 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= 20060611S-056548 (1304 letters) Database: RefSeqCP 33,732 sequences; 19,266,565 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Alignment gi|XP_536055.1| PREDICTED: similar to LanC-like protein 1 (40 k... 225 8e-59 Alignment gi|XP_540359.2| PREDICTED: similar to LanC-like protein 2 (Test... 149 5e-36 Alignment gi|XP_848545.1| PREDICTED: similar to CG11136-PA [Canis familia... 124 3e-28 Alignment gi|XP_548943.2| PREDICTED: similar to LanC lantibiotic syntheta... 84 3e-16 >ref|XP_536055.1| PREDICTED: similar to LanC-like protein 1 (40 kDa erythrocyte membrane protein) (p40) [Canis familiaris] Length = 399 Score = 225 bits (573), Expect = 8e-59 Identities = 111/194 (57%), Positives = 136/194 (70%), Gaps = 4/194 (2%) Frame = +3 Query: 537 VKQIPRTRTHCSCHSIFTTAKYLPTKRNFRQETPLMYDWYRDYYVGAAHGLSRIYYYLMH 716 V++IP++ C ++ T+ + L KRNF +TPLMY+WY++YYVGAAHGL+ IYY LM Sbjct: 171 VEKIPQSHIQQICEAVLTSGENLAQKRNFTAKTPLMYEWYQEYYVGAAHGLAGIYYLLMQ 230 Query: 717 PSLQVSHAKLQSLVKPSVDYVCQLKFPFGNYPPCVDNTPDLLVHWCHGSPGVIYMLIQAY 896 PSLQVSH KL +LVKPSVDYVCQLKFP GNYPPCVD+ DLLVHWCHGSPGVIYMLIQAY Sbjct: 231 PSLQVSHVKLHNLVKPSVDYVCQLKFPSGNYPPCVDDNRDLLVHWCHGSPGVIYMLIQAY 290 Query: 897 KVFREDRYLNDAYQCANVIWXXXXXXXXXXXCPALPGTP-SLLTLFT-SRRMKNLYGLVI 1070 K FR + YLNDA+QCA+VIW C G + LTL+ ++ MK LY Sbjct: 291 KAFRGEHYLNDAHQCADVIWRYGLLRKGYGLCHGTAGNAYAFLTLYNLTQDMKYLYRACK 350 Query: 1071 FRGGLI--MENGCK 1106 F + E+GC+ Sbjct: 351 FAEWCLDYGEHGCR 364 >ref|XP_540359.2| PREDICTED: similar to LanC-like protein 2 (Testis-specific adriamycin sensitivity protein) [Canis familiaris] Length = 452 Score = 149 bits (377), Expect = 5e-36 Identities = 70/152 (46%), Positives = 95/152 (62%), Gaps = 1/152 (0%) Frame = +3 Query: 579 SIFTTAKYLPTKRNFRQETPLMYDWYRDYYVGAAHGLSRIYYYLMHPSLQVSHAKLQSLV 758 +I + K L + + PL+Y W+R YVGAAHG++ IYY LM P+ +V L +V Sbjct: 229 AIIESGKTLSREERKAERCPLLYQWHRKQYVGAAHGMAGIYYMLMQPAAKVDQETLTEMV 288 Query: 759 KPSVDYVCQLKFPFGNYPPCVDNTPDLLVHWCHGSPGVIYMLIQAYKVFREDRYLNDAYQ 938 KPS+DYV +F GNYP + N D LVHWCHG+PGVI+ML+QAYKVF+E++YL DA + Sbjct: 289 KPSIDYVRHKRFRSGNYPSSLSNETDRLVHWCHGAPGVIHMLMQAYKVFKEEKYLKDAME 348 Query: 939 CANVIWXXXXXXXXXXXCPALPGTP-SLLTLF 1031 C++VIW C G S L+L+ Sbjct: 349 CSDVIWQRGLLRKGYGICHGTAGNGYSFLSLY 380 >ref|XP_848545.1| PREDICTED: similar to CG11136-PA [Canis familiaris] Length = 303 Score = 124 bits (310), Expect = 3e-28 Identities = 65/129 (50%), Positives = 71/129 (55%), Gaps = 1/129 (0%) Frame = +2 Query: 131 VWTQXXXXXXXXXXXXXXDCPEACVCAPGGQANCSWRALPAVPGGLRKSVRILLLDHNRV 310 VW+Q CPEAC CAPGGQANCS RALPAVP GL + +R LLLDHNRV Sbjct: 11 VWSQWSATATSSGTPGLPHCPEACACAPGGQANCSGRALPAVPAGLSRGLRALLLDHNRV 70 Query: 311 XXXXXXXXXXXXXXXXXXXHENRLRWMHSWAFWGLGTLQHLYLSANQLEVLVPSTCVP-Q 487 EN LRW+H+ AFW LG LQ L LSANQLE L P T P Sbjct: 71 RALPPGAFAGADTLLRLDLRENGLRWVHARAFWSLGALQQLDLSANQLEALAPGTFSPLS 130 Query: 488 QCAALPLAG 514 +L LAG Sbjct: 131 ALRSLSLAG 139 >ref|XP_548943.2| PREDICTED: similar to LanC lantibiotic synthetase component C-like 3 [Canis familiaris] Length = 420 Score = 84.0 bits (206), Expect = 3e-16 Identities = 52/157 (33%), Positives = 80/157 (50%), Gaps = 5/157 (3%) Frame = +3 Query: 573 CHSIFTTAKYLPTKRNFRQETPLMYDWYRDYYVGAAHGLSRIYYYLM--HPSLQVSHAKL 746 C +I + K K+ R+ PLMY +Y Y+GAAHGLS I L+ H L+ S Sbjct: 202 CQAILDSGKQYAMKK--RKPFPLMYSYYGTEYLGAAHGLSSILQMLLSYHEHLKPSD--- 256 Query: 747 QSLVKPSVDYVCQLKFPFGNYPPCVDNTPDL---LVHWCHGSPGVIYMLIQAYKVFREDR 917 Q LV SVD++ + + N+PP + + LVHWCHG+PG+ Y+ +AY V ++ + Sbjct: 257 QELVWQSVDFLMEQEQNC-NWPPELGEAIERENELVHWCHGAPGIAYLFAKAYLVSKKPQ 315 Query: 918 YLNDAYQCANVIWXXXXXXXXXXXCPALPGTPSLLTL 1028 YL+ +C + W C + G+ + L Sbjct: 316 YLDTCIRCGELTWQKGLLKKGPGICHGVAGSAYVFLL 352 Database: RefSeqCP Posted date: Aug 1, 2006 9:25 PM Number of letters in database: 19,266,565 Number of sequences in database: 33,732 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 53,517,208 Number of Sequences: 33732 Number of extensions: 1417052 Number of successful extensions: 5305 Number of sequences better than 1.0e-05: 4 Number of HSP's better than 0.0 without gapping: 4318 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5243 length of database: 19,266,565 effective HSP length: 106 effective length of database: 15,690,973 effective search space used: 5146639144 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
Search to RefSeqHP
BLASTX 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= 20060611S-056548 (1304 letters) Database: RefSeqHP 39,411 sequences; 17,774,539 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Alignment gi|NP_006046.1| lanthionine synthetase C-like protein 1 [Homo s... 224 1e-58 Alignment gi|NP_061167.1| LanC lantibiotic synthetase component C-like 2 ... 149 4e-36 Alignment gi|NP_001013675.1| hypothetical protein LOC389816 [Homo sapiens] 105 9e-23 Alignment gi|XP_944413.1| PREDICTED: similar to CG8355-PC, isoform C [Hom... 100 3e-21 Alignment gi|NP_940913.1| LanC lantibiotic synthetase component C-like 3 ... 84 2e-16 >ref|NP_006046.1| lanthionine synthetase C-like protein 1 [Homo sapiens] Length = 399 Score = 224 bits (571), Expect = 1e-58 Identities = 111/194 (57%), Positives = 137/194 (70%), Gaps = 4/194 (2%) Frame = +3 Query: 537 VKQIPRTRTHCSCHSIFTTAKYLPTKRNFRQETPLMYDWYRDYYVGAAHGLSRIYYYLMH 716 V++IP++ C +I T+ + L KRNF ++PLMY+WY++YYVGAAHGL+ IYYYLM Sbjct: 171 VEKIPQSHIQQICETILTSGENLARKRNFTAKSPLMYEWYQEYYVGAAHGLAGIYYYLMQ 230 Query: 717 PSLQVSHAKLQSLVKPSVDYVCQLKFPFGNYPPCVDNTPDLLVHWCHGSPGVIYMLIQAY 896 PSLQVS KL SLVKPSVDYVCQLKFP GNYPPC+ + DLLVHWCHG+PGVIYMLIQAY Sbjct: 231 PSLQVSQGKLHSLVKPSVDYVCQLKFPSGNYPPCIGDNRDLLVHWCHGAPGVIYMLIQAY 290 Query: 897 KVFREDRYLNDAYQCANVIWXXXXXXXXXXXCPALPGTP-SLLTLFT-SRRMKNLYGLVI 1070 KVFRE++YL DAYQCA+VIW C G + LTL+ ++ MK LY Sbjct: 291 KVFREEKYLCDAYQCADVIWQYGLLKKGYGLCHGSAGNAYAFLTLYNLTQDMKYLYRACK 350 Query: 1071 FRGGLIM--ENGCK 1106 F + E+GC+ Sbjct: 351 FAEWCLEYGEHGCR 364 >ref|NP_061167.1| LanC lantibiotic synthetase component C-like 2 [Homo sapiens] Length = 450 Score = 149 bits (377), Expect = 4e-36 Identities = 70/153 (45%), Positives = 96/153 (62%), Gaps = 1/153 (0%) Frame = +3 Query: 576 HSIFTTAKYLPTKRNFRQETPLMYDWYRDYYVGAAHGLSRIYYYLMHPSLQVSHAKLQSL 755 ++I + K L + + PL+Y W+R YVGAAHG++ IYY LM P+ +V L + Sbjct: 229 NAIIESGKTLSREERKTERCPLLYQWHRKQYVGAAHGMAGIYYMLMQPAAKVDQETLTEM 288 Query: 756 VKPSVDYVCQLKFPFGNYPPCVDNTPDLLVHWCHGSPGVIYMLIQAYKVFREDRYLNDAY 935 VKPS+DYV KF GNYP + N D LVHWCHG+PGVI+ML+QAYKVF+E++YL +A Sbjct: 289 VKPSIDYVRHKKFRSGNYPSSLSNETDRLVHWCHGAPGVIHMLMQAYKVFKEEKYLKEAM 348 Query: 936 QCANVIWXXXXXXXXXXXCPALPGTP-SLLTLF 1031 +C++VIW C G S L+L+ Sbjct: 349 ECSDVIWQRGLLRKGYGICHGTAGNGYSFLSLY 381 >ref|NP_001013675.1| hypothetical protein LOC389816 [Homo sapiens] Length = 334 Score = 105 bits (262), Expect = 9e-23 Identities = 64/151 (42%), Positives = 71/151 (47%), Gaps = 1/151 (0%) Frame = +2 Query: 131 VWTQXXXXXXXXXXXXXXDCPEACVCAPGGQANCSWRALPAVPGGLRKSVRILLLDHNRV 310 VW Q DCPE C C PGG A+CS +LPAVP GL +R LLLDHNRV Sbjct: 24 VWAQVSATASPSGSLGAPDCPEVCTCVPGGLASCSALSLPAVPPGLSLRLRALLLDHNRV 83 Query: 311 XXXXXXXXXXXXXXXXXXXHENRLRWMHSWAFWGLGTLQHLYLSANQLEVLVPSTCVPQQ 490 EN L +H AFWGLG LQ L LSANQLE L P T P + Sbjct: 84 RALPPGAFAGAGALQRLDLRENGLHSVHVRAFWGLGALQLLDLSANQLEALAPGTFAPLR 143 Query: 491 CAA-LPLAGIVNSRFASKTDSSDPYSLQLSL 580 L LAG +R + P LSL Sbjct: 144 ALRNLSLAGNRLARLEPAALGALPLLRSLSL 174 >ref|XP_944413.1| PREDICTED: similar to CG8355-PC, isoform C [Homo sapiens] Length = 355 Score = 100 bits (249), Expect = 3e-21 Identities = 61/133 (45%), Positives = 67/133 (50%), Gaps = 1/133 (0%) Frame = +2 Query: 185 DCPEACVCAPGGQANCSWRALPAVPGGLRKSVRILLLDHNRVXXXXXXXXXXXXXXXXXX 364 DCPE C C PGG A CS +LPAVP GL +R LLLDHNRV Sbjct: 63 DCPEVCTCVPGGLARCSALSLPAVPPGLSLRLRALLLDHNRVRALPPGAFAGAGALQRLD 122 Query: 365 XHENRLRWMHSWAFWGLGTLQHLYLSANQLEVLVPSTCVPQQCAA-LPLAGIVNSRFASK 541 EN L +H AFWGLG LQ L LSANQLE L P T P + L LAG +R Sbjct: 123 LRENGLHSVHVRAFWGLGALQLLDLSANQLEALAPGTFAPLRALRNLSLAGNRLARLEPA 182 Query: 542 TDSSDPYSLQLSL 580 + P LSL Sbjct: 183 ALGALPLLRSLSL 195 >ref|NP_940913.1| LanC lantibiotic synthetase component C-like 3 [Homo sapiens] Length = 388 Score = 84.3 bits (207), Expect = 2e-16 Identities = 52/157 (33%), Positives = 81/157 (51%), Gaps = 5/157 (3%) Frame = +3 Query: 573 CHSIFTTAKYLPTKRNFRQETPLMYDWYRDYYVGAAHGLSRIYYYLM--HPSLQVSHAKL 746 C +I + K K+ R+ PLMY +Y Y+GAAHGLS I L+ H L+ S Sbjct: 202 CQAILDSGKQYAIKK--RKPFPLMYSYYGTEYLGAAHGLSSILQMLLSYHEHLKPSD--- 256 Query: 747 QSLVKPSVDYVCQLKFPFGNYPPCVDNTPDL---LVHWCHGSPGVIYMLIQAYKVFREDR 917 + LV SVD++ + + N+PP + T + LVHWCHG+PG+ Y+ +AY V ++ + Sbjct: 257 RELVWQSVDFLMEQEQNC-NWPPELGETIERENELVHWCHGAPGIAYLFAKAYLVSKKPQ 315 Query: 918 YLNDAYQCANVIWXXXXXXXXXXXCPALPGTPSLLTL 1028 YL+ +C + W C + G+ + L Sbjct: 316 YLDTCIRCGELTWQKGLLKKGPGICHGVAGSAYVFLL 352 Database: RefSeqHP Posted date: Aug 2, 2006 12:57 AM Number of letters in database: 17,774,539 Number of sequences in database: 39,411 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 51,978,654 Number of Sequences: 39411 Number of extensions: 1421670 Number of successful extensions: 5868 Number of sequences better than 1.0e-05: 5 Number of HSP's better than 0.0 without gapping: 4445 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5727 length of database: 17,774,539 effective HSP length: 105 effective length of database: 13,636,384 effective search space used: 4486370336 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
Search to RefSeqMP
BLASTX 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= 20060611S-056548 (1304 letters) Database: RefSeqMP 45,328 sequences; 21,768,885 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Alignment gi|NP_067270.1| LanC (bacterial lantibiotic synthetase componen... 214 2e-55 Alignment gi|NP_598498.1| LanC (bacterial lantibiotic synthetase componen... 146 5e-35 Alignment gi|XP_984245.1| PREDICTED: similar to LanC (bacterial lantibiot... 119 9e-27 Alignment gi|NP_666229.1| hypothetical protein LOC227618 [Mus musculus] 109 6e-24 Alignment gi|NP_775590.1| LanC lantibiotic synthetase component C-like 3 ... 85 2e-16 >ref|NP_067270.1| LanC (bacterial lantibiotic synthetase component C)-like 1 [Mus musculus] Length = 399 Score = 214 bits (544), Expect = 2e-55 Identities = 105/193 (54%), Positives = 135/193 (69%), Gaps = 4/193 (2%) Frame = +3 Query: 540 KQIPRTRTHCSCHSIFTTAKYLPTKRNFRQETPLMYDWYRDYYVGAAHGLSRIYYYLMHP 719 ++IP++ C +I T+ + L KRN ++PLMY+WY++YYVGAAHGL+ IYYYLM P Sbjct: 172 EKIPQSHIQQICENILTSGENLSRKRNLAAKSPLMYEWYQEYYVGAAHGLAGIYYYLMQP 231 Query: 720 SLQVSHAKLQSLVKPSVDYVCQLKFPFGNYPPCVDNTPDLLVHWCHGSPGVIYMLIQAYK 899 SLQV+ KL SLVKPSVD+VC+LKFP GNYPPC+D+T DLLVHWCHG+PGVIYMLIQAYK Sbjct: 232 SLQVNQGKLHSLVKPSVDFVCRLKFPSGNYPPCLDDTRDLLVHWCHGAPGVIYMLIQAYK 291 Query: 900 VFREDRYLNDAYQCANVIWXXXXXXXXXXXCPALPGTP-SLLTLFT-SRRMKNLYGLVIF 1073 VF+E+RYL DA QCA+VIW C G + L L+ ++ +K LY F Sbjct: 292 VFKEERYLCDAQQCADVIWQYGLLKKGYGLCHGAAGNAYAFLALYNLTQDLKYLYRACKF 351 Query: 1074 RGGLI--MENGCK 1106 + E+GC+ Sbjct: 352 AEWCLDYGEHGCR 364 >ref|NP_598498.1| LanC (bacterial lantibiotic synthetase component C)-like 2 [Mus musculus] Length = 450 Score = 146 bits (368), Expect = 5e-35 Identities = 68/152 (44%), Positives = 94/152 (61%), Gaps = 1/152 (0%) Frame = +3 Query: 579 SIFTTAKYLPTKRNFRQETPLMYDWYRDYYVGAAHGLSRIYYYLMHPSLQVSHAKLQSLV 758 +I + K L + + PL+Y W+R YVGAAHG++ IYY LM P +V L +V Sbjct: 230 AIIESGKSLSREERKSERCPLLYQWHRKQYVGAAHGMAGIYYMLMQPEAKVDQETLTEMV 289 Query: 759 KPSVDYVCQLKFPFGNYPPCVDNTPDLLVHWCHGSPGVIYMLIQAYKVFREDRYLNDAYQ 938 KPS+DYV KF GNYP + N D LVHWCHG+PGVI++L+QAY+VF+E++YL +A + Sbjct: 290 KPSIDYVRHKKFRSGNYPSSLSNETDRLVHWCHGAPGVIHVLLQAYQVFKEEKYLKEAME 349 Query: 939 CANVIWXXXXXXXXXXXCPALPGTP-SLLTLF 1031 C++VIW C G S L+L+ Sbjct: 350 CSDVIWQRGLLRKGYGICHGTSGNGYSFLSLY 381 >ref|XP_984245.1| PREDICTED: similar to LanC (bacterial lantibiotic synthetase component C)-like 2 [Mus musculus] Length = 390 Score = 119 bits (297), Expect = 9e-27 Identities = 53/107 (49%), Positives = 70/107 (65%) Frame = +3 Query: 579 SIFTTAKYLPTKRNFRQETPLMYDWYRDYYVGAAHGLSRIYYYLMHPSLQVSHAKLQSLV 758 +I + K L + + PL+Y W+R YVGAAHG++ IYY LM P +V L +V Sbjct: 230 AIIESGKSLSREERKSERCPLLYQWHRKQYVGAAHGMAGIYYMLMQPEAKVDQETLTEMV 289 Query: 759 KPSVDYVCQLKFPFGNYPPCVDNTPDLLVHWCHGSPGVIYMLIQAYK 899 KPS+DYV KF GNYP + N D LVHWCHG+PGVI++L+QAY+ Sbjct: 290 KPSIDYVRHKKFRSGNYPSSLSNETDRLVHWCHGAPGVIHVLLQAYQ 336 >ref|NP_666229.1| hypothetical protein LOC227618 [Mus musculus] Length = 331 Score = 109 bits (273), Expect = 6e-24 Identities = 62/129 (48%), Positives = 70/129 (54%), Gaps = 1/129 (0%) Frame = +2 Query: 131 VWTQXXXXXXXXXXXXXXDCPEACVCAPGGQANCSWRALPAVPGGLRKSVRILLLDHNRV 310 VWTQ +CPEAC C+ GG+ANCS ALPAVP L VR LLLDHNRV Sbjct: 24 VWTQEDIGTAPSKSPVAPECPEACSCSLGGKANCSALALPAVPADLSWQVRSLLLDHNRV 83 Query: 311 XXXXXXXXXXXXXXXXXXXHENRLRWMHSWAFWGLGTLQHLYLSANQLEVLVPSTCVPQQ 490 ENRLR +H+ AFWGLG LQ L LS+NQLE L P T P + Sbjct: 84 SALPPGAFANAGALLYLDLRENRLRSVHARAFWGLGVLQWLDLSSNQLETLPPGTFAPLR 143 Query: 491 CAA-LPLAG 514 + L LAG Sbjct: 144 ALSFLSLAG 152 >ref|NP_775590.1| LanC lantibiotic synthetase component C-like 3 [Mus musculus] Length = 420 Score = 84.7 bits (208), Expect = 2e-16 Identities = 49/161 (30%), Positives = 82/161 (50%), Gaps = 3/161 (1%) Frame = +3 Query: 555 TRTHCSCHSIFTTAKYLPTKRNFRQETPLMYDWYRDYYVGAAHGLSRIYYYLMHPSLQVS 734 T+ C +I + K K+ R+ PLMY +Y Y+GAAHGLS I L+ + Sbjct: 196 TQIKAICQAILDSGKQYALKK--RKPFPLMYSYYGTEYLGAAHGLSSILQMLLSYQEHLK 253 Query: 735 HAKLQSLVKPSVDYVCQLKFPFGNYPPCVDNTPDL---LVHWCHGSPGVIYMLIQAYKVF 905 + + LV+ SVD++ + + N+PP + T + LVHWCHG+PG+ Y+ +AY + Sbjct: 254 PSD-RELVRQSVDFLMEQEQNC-NWPPELGETIERENELVHWCHGAPGIAYLFAKAYLIS 311 Query: 906 REDRYLNDAYQCANVIWXXXXXXXXXXXCPALPGTPSLLTL 1028 ++ +YL+ +C + W C + G+ + L Sbjct: 312 KKPQYLDTCIRCGELTWQKGLLKKGPGICHGVAGSAYVFLL 352 Database: RefSeqMP Posted date: Aug 2, 2006 12:58 AM Number of letters in database: 21,768,885 Number of sequences in database: 45,328 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 60,821,765 Number of Sequences: 45328 Number of extensions: 1599779 Number of successful extensions: 6118 Number of sequences better than 1.0e-05: 5 Number of HSP's better than 0.0 without gapping: 4760 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 6027 length of database: 21,768,885 effective HSP length: 106 effective length of database: 16,964,117 effective search space used: 5564230376 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)