BLASTX 2.2.10 [Oct-19-2004]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20060611S-056548
(1304 letters)
Database: RefSeqSP
1040 sequences; 434,620 total letters
Searching...done
***** No hits found ******
Database: RefSeqSP
Posted date: Aug 1, 2006 7:14 PM
Number of letters in database: 434,620
Number of sequences in database: 1040
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,210,427
Number of Sequences: 1040
Number of extensions: 31282
Number of successful extensions: 97
Number of sequences better than 1.0e-05: 0
Number of HSP's better than 0.0 without gapping: 88
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 97
length of database: 434,620
effective HSP length: 79
effective length of database: 352,460
effective search space used: 125123300
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
Search to RefSeqBP
BLASTX 2.2.10 [Oct-19-2004]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20060611S-056548
(1304 letters)
Database: RefSeqBP
33,508 sequences; 16,112,626 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_612082.2| PREDICTED: similar to LanC-like protein 1 (40 k... 225 5e-59
Alignment gi|XP_584526.2| PREDICTED: similar to CG11136-PA [Bos taurus] 134 2e-31
Alignment gi|XP_614740.2| PREDICTED: similar to LanC-like protein 2 (Test... 115 6e-26
Alignment gi|XP_597454.2| PREDICTED: similar to LanC lantibiotic syntheta... 84 2e-16
>ref|XP_612082.2| PREDICTED: similar to LanC-like protein 1 (40 kDa erythrocyte
membrane protein) (p40) [Bos taurus]
Length = 399
Score = 225 bits (574), Expect = 5e-59
Identities = 109/193 (56%), Positives = 139/193 (72%), Gaps = 4/193 (2%)
Frame = +3
Query: 540 KQIPRTRTHCSCHSIFTTAKYLPTKRNFRQETPLMYDWYRDYYVGAAHGLSRIYYYLMHP 719
++IP++ C ++ T+ + L KR F +TPLMY+WY++YYVGAAHGL+ IYYYLM P
Sbjct: 172 EKIPQSHIQQICETVLTSGEDLARKRRFTGKTPLMYEWYQEYYVGAAHGLAGIYYYLMQP 231
Query: 720 SLQVSHAKLQSLVKPSVDYVCQLKFPFGNYPPCVDNTPDLLVHWCHGSPGVIYMLIQAYK 899
SLQVSHAKL +LVKPSVDYVCQLKFP GNYPPCVD++ DLL+HWCHG+PGVIYML QAYK
Sbjct: 232 SLQVSHAKLHNLVKPSVDYVCQLKFPSGNYPPCVDDSRDLLIHWCHGAPGVIYMLTQAYK 291
Query: 900 VFREDRYLNDAYQCANVIWXXXXXXXXXXXCPALPGTP-SLLTLFT-SRRMKNLYGLVIF 1073
VF+E+RYLNDAYQCA+VIW C G + L+L++ ++ K LY F
Sbjct: 292 VFKEERYLNDAYQCADVIWQYGLLKKGYGLCHGTAGNAYAFLSLYSLTQDAKYLYRACKF 351
Query: 1074 RGGLI--MENGCK 1106
+ E+GC+
Sbjct: 352 AEWCLDYGEHGCR 364
>ref|XP_584526.2| PREDICTED: similar to CG11136-PA [Bos taurus]
Length = 328
Score = 134 bits (336), Expect = 2e-31
Identities = 69/135 (51%), Positives = 79/135 (58%)
Frame = +2
Query: 131 VWTQXXXXXXXXXXXXXXDCPEACVCAPGGQANCSWRALPAVPGGLRKSVRILLLDHNRV 310
VWTQ DCPEACVCAPGGQANCS RALPAVPGGL + VR+LLL+HNRV
Sbjct: 26 VWTQAPAAAASWGTPGALDCPEACVCAPGGQANCSERALPAVPGGLNRRVRVLLLNHNRV 85
Query: 311 XXXXXXXXXXXXXXXXXXXHENRLRWMHSWAFWGLGTLQHLYLSANQLEVLVPSTCVPQQ 490
EN LRW+H+ AFWGLG L+ L LSANQLE L+P T P +
Sbjct: 86 HALPPGAFVDAGALLRLDLRENGLRWVHARAFWGLGALEQLDLSANQLEALLPGTFAPLR 145
Query: 491 CAALPLAGIVNSRFA 535
AL + +R A
Sbjct: 146 --ALRALSLAENRLA 158
>ref|XP_614740.2| PREDICTED: similar to LanC-like protein 2 (Testis-specific
adriamycin sensitivity protein), partial [Bos taurus]
Length = 331
Score = 115 bits (289), Expect = 6e-26
Identities = 51/108 (47%), Positives = 72/108 (66%)
Frame = +3
Query: 576 HSIFTTAKYLPTKRNFRQETPLMYDWYRDYYVGAAHGLSRIYYYLMHPSLQVSHAKLQSL 755
++I + K L + + PL+Y W+R YVGAAHG++ IYY LM P+ +V L +
Sbjct: 224 NAIIESGKALSKEEKKVERCPLLYQWHRKQYVGAAHGMAGIYYMLMQPAAKVDQETLTEM 283
Query: 756 VKPSVDYVCQLKFPFGNYPPCVDNTPDLLVHWCHGSPGVIYMLIQAYK 899
VKPS+DY+ +F GNYP + N D LVHWCHG+PGVI++L+QA+K
Sbjct: 284 VKPSIDYMRHKRFRSGNYPSSLSNETDRLVHWCHGAPGVIHVLMQAHK 331
>ref|XP_597454.2| PREDICTED: similar to LanC lantibiotic synthetase component C-like 3
[Bos taurus]
Length = 244
Score = 84.0 bits (206), Expect = 2e-16
Identities = 52/157 (33%), Positives = 80/157 (50%), Gaps = 5/157 (3%)
Frame = +3
Query: 573 CHSIFTTAKYLPTKRNFRQETPLMYDWYRDYYVGAAHGLSRIYYYLM--HPSLQVSHAKL 746
C +I + K K+ R+ PLMY +Y Y+GAAHGLS I L+ H L+ S
Sbjct: 26 CQAILDSGKQYAMKK--RKPFPLMYSYYGTEYLGAAHGLSSILQMLLSYHEHLKPSD--- 80
Query: 747 QSLVKPSVDYVCQLKFPFGNYPPCVDNTPDL---LVHWCHGSPGVIYMLIQAYKVFREDR 917
Q LV SVD++ + + N+PP + + LVHWCHG+PG+ Y+ +AY V ++ +
Sbjct: 81 QELVWQSVDFLMEQEQNC-NWPPELGEAIERENELVHWCHGAPGIAYLFAKAYLVSKKPQ 139
Query: 918 YLNDAYQCANVIWXXXXXXXXXXXCPALPGTPSLLTL 1028
YL+ +C + W C + G+ + L
Sbjct: 140 YLDTCIRCGELTWQKGLLKKGPGICHGVAGSAYVFLL 176
Database: RefSeqBP
Posted date: Aug 1, 2006 7:14 PM
Number of letters in database: 16,112,626
Number of sequences in database: 33,508
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 45,549,784
Number of Sequences: 33508
Number of extensions: 1204561
Number of successful extensions: 4253
Number of sequences better than 1.0e-05: 4
Number of HSP's better than 0.0 without gapping: 3539
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4220
length of database: 16,112,626
effective HSP length: 104
effective length of database: 12,627,794
effective search space used: 4167172020
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
Search to RefSeqCP
BLASTX 2.2.10 [Oct-19-2004]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20060611S-056548
(1304 letters)
Database: RefSeqCP
33,732 sequences; 19,266,565 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_536055.1| PREDICTED: similar to LanC-like protein 1 (40 k... 225 8e-59
Alignment gi|XP_540359.2| PREDICTED: similar to LanC-like protein 2 (Test... 149 5e-36
Alignment gi|XP_848545.1| PREDICTED: similar to CG11136-PA [Canis familia... 124 3e-28
Alignment gi|XP_548943.2| PREDICTED: similar to LanC lantibiotic syntheta... 84 3e-16
>ref|XP_536055.1| PREDICTED: similar to LanC-like protein 1 (40 kDa erythrocyte
membrane protein) (p40) [Canis familiaris]
Length = 399
Score = 225 bits (573), Expect = 8e-59
Identities = 111/194 (57%), Positives = 136/194 (70%), Gaps = 4/194 (2%)
Frame = +3
Query: 537 VKQIPRTRTHCSCHSIFTTAKYLPTKRNFRQETPLMYDWYRDYYVGAAHGLSRIYYYLMH 716
V++IP++ C ++ T+ + L KRNF +TPLMY+WY++YYVGAAHGL+ IYY LM
Sbjct: 171 VEKIPQSHIQQICEAVLTSGENLAQKRNFTAKTPLMYEWYQEYYVGAAHGLAGIYYLLMQ 230
Query: 717 PSLQVSHAKLQSLVKPSVDYVCQLKFPFGNYPPCVDNTPDLLVHWCHGSPGVIYMLIQAY 896
PSLQVSH KL +LVKPSVDYVCQLKFP GNYPPCVD+ DLLVHWCHGSPGVIYMLIQAY
Sbjct: 231 PSLQVSHVKLHNLVKPSVDYVCQLKFPSGNYPPCVDDNRDLLVHWCHGSPGVIYMLIQAY 290
Query: 897 KVFREDRYLNDAYQCANVIWXXXXXXXXXXXCPALPGTP-SLLTLFT-SRRMKNLYGLVI 1070
K FR + YLNDA+QCA+VIW C G + LTL+ ++ MK LY
Sbjct: 291 KAFRGEHYLNDAHQCADVIWRYGLLRKGYGLCHGTAGNAYAFLTLYNLTQDMKYLYRACK 350
Query: 1071 FRGGLI--MENGCK 1106
F + E+GC+
Sbjct: 351 FAEWCLDYGEHGCR 364
>ref|XP_540359.2| PREDICTED: similar to LanC-like protein 2 (Testis-specific adriamycin
sensitivity protein) [Canis familiaris]
Length = 452
Score = 149 bits (377), Expect = 5e-36
Identities = 70/152 (46%), Positives = 95/152 (62%), Gaps = 1/152 (0%)
Frame = +3
Query: 579 SIFTTAKYLPTKRNFRQETPLMYDWYRDYYVGAAHGLSRIYYYLMHPSLQVSHAKLQSLV 758
+I + K L + + PL+Y W+R YVGAAHG++ IYY LM P+ +V L +V
Sbjct: 229 AIIESGKTLSREERKAERCPLLYQWHRKQYVGAAHGMAGIYYMLMQPAAKVDQETLTEMV 288
Query: 759 KPSVDYVCQLKFPFGNYPPCVDNTPDLLVHWCHGSPGVIYMLIQAYKVFREDRYLNDAYQ 938
KPS+DYV +F GNYP + N D LVHWCHG+PGVI+ML+QAYKVF+E++YL DA +
Sbjct: 289 KPSIDYVRHKRFRSGNYPSSLSNETDRLVHWCHGAPGVIHMLMQAYKVFKEEKYLKDAME 348
Query: 939 CANVIWXXXXXXXXXXXCPALPGTP-SLLTLF 1031
C++VIW C G S L+L+
Sbjct: 349 CSDVIWQRGLLRKGYGICHGTAGNGYSFLSLY 380
>ref|XP_848545.1| PREDICTED: similar to CG11136-PA [Canis familiaris]
Length = 303
Score = 124 bits (310), Expect = 3e-28
Identities = 65/129 (50%), Positives = 71/129 (55%), Gaps = 1/129 (0%)
Frame = +2
Query: 131 VWTQXXXXXXXXXXXXXXDCPEACVCAPGGQANCSWRALPAVPGGLRKSVRILLLDHNRV 310
VW+Q CPEAC CAPGGQANCS RALPAVP GL + +R LLLDHNRV
Sbjct: 11 VWSQWSATATSSGTPGLPHCPEACACAPGGQANCSGRALPAVPAGLSRGLRALLLDHNRV 70
Query: 311 XXXXXXXXXXXXXXXXXXXHENRLRWMHSWAFWGLGTLQHLYLSANQLEVLVPSTCVP-Q 487
EN LRW+H+ AFW LG LQ L LSANQLE L P T P
Sbjct: 71 RALPPGAFAGADTLLRLDLRENGLRWVHARAFWSLGALQQLDLSANQLEALAPGTFSPLS 130
Query: 488 QCAALPLAG 514
+L LAG
Sbjct: 131 ALRSLSLAG 139
>ref|XP_548943.2| PREDICTED: similar to LanC lantibiotic synthetase component C-like 3
[Canis familiaris]
Length = 420
Score = 84.0 bits (206), Expect = 3e-16
Identities = 52/157 (33%), Positives = 80/157 (50%), Gaps = 5/157 (3%)
Frame = +3
Query: 573 CHSIFTTAKYLPTKRNFRQETPLMYDWYRDYYVGAAHGLSRIYYYLM--HPSLQVSHAKL 746
C +I + K K+ R+ PLMY +Y Y+GAAHGLS I L+ H L+ S
Sbjct: 202 CQAILDSGKQYAMKK--RKPFPLMYSYYGTEYLGAAHGLSSILQMLLSYHEHLKPSD--- 256
Query: 747 QSLVKPSVDYVCQLKFPFGNYPPCVDNTPDL---LVHWCHGSPGVIYMLIQAYKVFREDR 917
Q LV SVD++ + + N+PP + + LVHWCHG+PG+ Y+ +AY V ++ +
Sbjct: 257 QELVWQSVDFLMEQEQNC-NWPPELGEAIERENELVHWCHGAPGIAYLFAKAYLVSKKPQ 315
Query: 918 YLNDAYQCANVIWXXXXXXXXXXXCPALPGTPSLLTL 1028
YL+ +C + W C + G+ + L
Sbjct: 316 YLDTCIRCGELTWQKGLLKKGPGICHGVAGSAYVFLL 352
Database: RefSeqCP
Posted date: Aug 1, 2006 9:25 PM
Number of letters in database: 19,266,565
Number of sequences in database: 33,732
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 53,517,208
Number of Sequences: 33732
Number of extensions: 1417052
Number of successful extensions: 5305
Number of sequences better than 1.0e-05: 4
Number of HSP's better than 0.0 without gapping: 4318
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5243
length of database: 19,266,565
effective HSP length: 106
effective length of database: 15,690,973
effective search space used: 5146639144
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
Search to RefSeqHP
BLASTX 2.2.10 [Oct-19-2004]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20060611S-056548
(1304 letters)
Database: RefSeqHP
39,411 sequences; 17,774,539 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_006046.1| lanthionine synthetase C-like protein 1 [Homo s... 224 1e-58
Alignment gi|NP_061167.1| LanC lantibiotic synthetase component C-like 2 ... 149 4e-36
Alignment gi|NP_001013675.1| hypothetical protein LOC389816 [Homo sapiens] 105 9e-23
Alignment gi|XP_944413.1| PREDICTED: similar to CG8355-PC, isoform C [Hom... 100 3e-21
Alignment gi|NP_940913.1| LanC lantibiotic synthetase component C-like 3 ... 84 2e-16
>ref|NP_006046.1| lanthionine synthetase C-like protein 1 [Homo sapiens]
Length = 399
Score = 224 bits (571), Expect = 1e-58
Identities = 111/194 (57%), Positives = 137/194 (70%), Gaps = 4/194 (2%)
Frame = +3
Query: 537 VKQIPRTRTHCSCHSIFTTAKYLPTKRNFRQETPLMYDWYRDYYVGAAHGLSRIYYYLMH 716
V++IP++ C +I T+ + L KRNF ++PLMY+WY++YYVGAAHGL+ IYYYLM
Sbjct: 171 VEKIPQSHIQQICETILTSGENLARKRNFTAKSPLMYEWYQEYYVGAAHGLAGIYYYLMQ 230
Query: 717 PSLQVSHAKLQSLVKPSVDYVCQLKFPFGNYPPCVDNTPDLLVHWCHGSPGVIYMLIQAY 896
PSLQVS KL SLVKPSVDYVCQLKFP GNYPPC+ + DLLVHWCHG+PGVIYMLIQAY
Sbjct: 231 PSLQVSQGKLHSLVKPSVDYVCQLKFPSGNYPPCIGDNRDLLVHWCHGAPGVIYMLIQAY 290
Query: 897 KVFREDRYLNDAYQCANVIWXXXXXXXXXXXCPALPGTP-SLLTLFT-SRRMKNLYGLVI 1070
KVFRE++YL DAYQCA+VIW C G + LTL+ ++ MK LY
Sbjct: 291 KVFREEKYLCDAYQCADVIWQYGLLKKGYGLCHGSAGNAYAFLTLYNLTQDMKYLYRACK 350
Query: 1071 FRGGLIM--ENGCK 1106
F + E+GC+
Sbjct: 351 FAEWCLEYGEHGCR 364
>ref|NP_061167.1| LanC lantibiotic synthetase component C-like 2 [Homo sapiens]
Length = 450
Score = 149 bits (377), Expect = 4e-36
Identities = 70/153 (45%), Positives = 96/153 (62%), Gaps = 1/153 (0%)
Frame = +3
Query: 576 HSIFTTAKYLPTKRNFRQETPLMYDWYRDYYVGAAHGLSRIYYYLMHPSLQVSHAKLQSL 755
++I + K L + + PL+Y W+R YVGAAHG++ IYY LM P+ +V L +
Sbjct: 229 NAIIESGKTLSREERKTERCPLLYQWHRKQYVGAAHGMAGIYYMLMQPAAKVDQETLTEM 288
Query: 756 VKPSVDYVCQLKFPFGNYPPCVDNTPDLLVHWCHGSPGVIYMLIQAYKVFREDRYLNDAY 935
VKPS+DYV KF GNYP + N D LVHWCHG+PGVI+ML+QAYKVF+E++YL +A
Sbjct: 289 VKPSIDYVRHKKFRSGNYPSSLSNETDRLVHWCHGAPGVIHMLMQAYKVFKEEKYLKEAM 348
Query: 936 QCANVIWXXXXXXXXXXXCPALPGTP-SLLTLF 1031
+C++VIW C G S L+L+
Sbjct: 349 ECSDVIWQRGLLRKGYGICHGTAGNGYSFLSLY 381
>ref|NP_001013675.1| hypothetical protein LOC389816 [Homo sapiens]
Length = 334
Score = 105 bits (262), Expect = 9e-23
Identities = 64/151 (42%), Positives = 71/151 (47%), Gaps = 1/151 (0%)
Frame = +2
Query: 131 VWTQXXXXXXXXXXXXXXDCPEACVCAPGGQANCSWRALPAVPGGLRKSVRILLLDHNRV 310
VW Q DCPE C C PGG A+CS +LPAVP GL +R LLLDHNRV
Sbjct: 24 VWAQVSATASPSGSLGAPDCPEVCTCVPGGLASCSALSLPAVPPGLSLRLRALLLDHNRV 83
Query: 311 XXXXXXXXXXXXXXXXXXXHENRLRWMHSWAFWGLGTLQHLYLSANQLEVLVPSTCVPQQ 490
EN L +H AFWGLG LQ L LSANQLE L P T P +
Sbjct: 84 RALPPGAFAGAGALQRLDLRENGLHSVHVRAFWGLGALQLLDLSANQLEALAPGTFAPLR 143
Query: 491 CAA-LPLAGIVNSRFASKTDSSDPYSLQLSL 580
L LAG +R + P LSL
Sbjct: 144 ALRNLSLAGNRLARLEPAALGALPLLRSLSL 174
>ref|XP_944413.1| PREDICTED: similar to CG8355-PC, isoform C [Homo sapiens]
Length = 355
Score = 100 bits (249), Expect = 3e-21
Identities = 61/133 (45%), Positives = 67/133 (50%), Gaps = 1/133 (0%)
Frame = +2
Query: 185 DCPEACVCAPGGQANCSWRALPAVPGGLRKSVRILLLDHNRVXXXXXXXXXXXXXXXXXX 364
DCPE C C PGG A CS +LPAVP GL +R LLLDHNRV
Sbjct: 63 DCPEVCTCVPGGLARCSALSLPAVPPGLSLRLRALLLDHNRVRALPPGAFAGAGALQRLD 122
Query: 365 XHENRLRWMHSWAFWGLGTLQHLYLSANQLEVLVPSTCVPQQCAA-LPLAGIVNSRFASK 541
EN L +H AFWGLG LQ L LSANQLE L P T P + L LAG +R
Sbjct: 123 LRENGLHSVHVRAFWGLGALQLLDLSANQLEALAPGTFAPLRALRNLSLAGNRLARLEPA 182
Query: 542 TDSSDPYSLQLSL 580
+ P LSL
Sbjct: 183 ALGALPLLRSLSL 195
>ref|NP_940913.1| LanC lantibiotic synthetase component C-like 3 [Homo sapiens]
Length = 388
Score = 84.3 bits (207), Expect = 2e-16
Identities = 52/157 (33%), Positives = 81/157 (51%), Gaps = 5/157 (3%)
Frame = +3
Query: 573 CHSIFTTAKYLPTKRNFRQETPLMYDWYRDYYVGAAHGLSRIYYYLM--HPSLQVSHAKL 746
C +I + K K+ R+ PLMY +Y Y+GAAHGLS I L+ H L+ S
Sbjct: 202 CQAILDSGKQYAIKK--RKPFPLMYSYYGTEYLGAAHGLSSILQMLLSYHEHLKPSD--- 256
Query: 747 QSLVKPSVDYVCQLKFPFGNYPPCVDNTPDL---LVHWCHGSPGVIYMLIQAYKVFREDR 917
+ LV SVD++ + + N+PP + T + LVHWCHG+PG+ Y+ +AY V ++ +
Sbjct: 257 RELVWQSVDFLMEQEQNC-NWPPELGETIERENELVHWCHGAPGIAYLFAKAYLVSKKPQ 315
Query: 918 YLNDAYQCANVIWXXXXXXXXXXXCPALPGTPSLLTL 1028
YL+ +C + W C + G+ + L
Sbjct: 316 YLDTCIRCGELTWQKGLLKKGPGICHGVAGSAYVFLL 352
Database: RefSeqHP
Posted date: Aug 2, 2006 12:57 AM
Number of letters in database: 17,774,539
Number of sequences in database: 39,411
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 51,978,654
Number of Sequences: 39411
Number of extensions: 1421670
Number of successful extensions: 5868
Number of sequences better than 1.0e-05: 5
Number of HSP's better than 0.0 without gapping: 4445
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5727
length of database: 17,774,539
effective HSP length: 105
effective length of database: 13,636,384
effective search space used: 4486370336
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
Search to RefSeqMP
BLASTX 2.2.10 [Oct-19-2004]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20060611S-056548
(1304 letters)
Database: RefSeqMP
45,328 sequences; 21,768,885 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_067270.1| LanC (bacterial lantibiotic synthetase componen... 214 2e-55
Alignment gi|NP_598498.1| LanC (bacterial lantibiotic synthetase componen... 146 5e-35
Alignment gi|XP_984245.1| PREDICTED: similar to LanC (bacterial lantibiot... 119 9e-27
Alignment gi|NP_666229.1| hypothetical protein LOC227618 [Mus musculus] 109 6e-24
Alignment gi|NP_775590.1| LanC lantibiotic synthetase component C-like 3 ... 85 2e-16
>ref|NP_067270.1| LanC (bacterial lantibiotic synthetase component C)-like 1 [Mus
musculus]
Length = 399
Score = 214 bits (544), Expect = 2e-55
Identities = 105/193 (54%), Positives = 135/193 (69%), Gaps = 4/193 (2%)
Frame = +3
Query: 540 KQIPRTRTHCSCHSIFTTAKYLPTKRNFRQETPLMYDWYRDYYVGAAHGLSRIYYYLMHP 719
++IP++ C +I T+ + L KRN ++PLMY+WY++YYVGAAHGL+ IYYYLM P
Sbjct: 172 EKIPQSHIQQICENILTSGENLSRKRNLAAKSPLMYEWYQEYYVGAAHGLAGIYYYLMQP 231
Query: 720 SLQVSHAKLQSLVKPSVDYVCQLKFPFGNYPPCVDNTPDLLVHWCHGSPGVIYMLIQAYK 899
SLQV+ KL SLVKPSVD+VC+LKFP GNYPPC+D+T DLLVHWCHG+PGVIYMLIQAYK
Sbjct: 232 SLQVNQGKLHSLVKPSVDFVCRLKFPSGNYPPCLDDTRDLLVHWCHGAPGVIYMLIQAYK 291
Query: 900 VFREDRYLNDAYQCANVIWXXXXXXXXXXXCPALPGTP-SLLTLFT-SRRMKNLYGLVIF 1073
VF+E+RYL DA QCA+VIW C G + L L+ ++ +K LY F
Sbjct: 292 VFKEERYLCDAQQCADVIWQYGLLKKGYGLCHGAAGNAYAFLALYNLTQDLKYLYRACKF 351
Query: 1074 RGGLI--MENGCK 1106
+ E+GC+
Sbjct: 352 AEWCLDYGEHGCR 364
>ref|NP_598498.1| LanC (bacterial lantibiotic synthetase component C)-like 2 [Mus
musculus]
Length = 450
Score = 146 bits (368), Expect = 5e-35
Identities = 68/152 (44%), Positives = 94/152 (61%), Gaps = 1/152 (0%)
Frame = +3
Query: 579 SIFTTAKYLPTKRNFRQETPLMYDWYRDYYVGAAHGLSRIYYYLMHPSLQVSHAKLQSLV 758
+I + K L + + PL+Y W+R YVGAAHG++ IYY LM P +V L +V
Sbjct: 230 AIIESGKSLSREERKSERCPLLYQWHRKQYVGAAHGMAGIYYMLMQPEAKVDQETLTEMV 289
Query: 759 KPSVDYVCQLKFPFGNYPPCVDNTPDLLVHWCHGSPGVIYMLIQAYKVFREDRYLNDAYQ 938
KPS+DYV KF GNYP + N D LVHWCHG+PGVI++L+QAY+VF+E++YL +A +
Sbjct: 290 KPSIDYVRHKKFRSGNYPSSLSNETDRLVHWCHGAPGVIHVLLQAYQVFKEEKYLKEAME 349
Query: 939 CANVIWXXXXXXXXXXXCPALPGTP-SLLTLF 1031
C++VIW C G S L+L+
Sbjct: 350 CSDVIWQRGLLRKGYGICHGTSGNGYSFLSLY 381
>ref|XP_984245.1| PREDICTED: similar to LanC (bacterial lantibiotic synthetase
component C)-like 2 [Mus musculus]
Length = 390
Score = 119 bits (297), Expect = 9e-27
Identities = 53/107 (49%), Positives = 70/107 (65%)
Frame = +3
Query: 579 SIFTTAKYLPTKRNFRQETPLMYDWYRDYYVGAAHGLSRIYYYLMHPSLQVSHAKLQSLV 758
+I + K L + + PL+Y W+R YVGAAHG++ IYY LM P +V L +V
Sbjct: 230 AIIESGKSLSREERKSERCPLLYQWHRKQYVGAAHGMAGIYYMLMQPEAKVDQETLTEMV 289
Query: 759 KPSVDYVCQLKFPFGNYPPCVDNTPDLLVHWCHGSPGVIYMLIQAYK 899
KPS+DYV KF GNYP + N D LVHWCHG+PGVI++L+QAY+
Sbjct: 290 KPSIDYVRHKKFRSGNYPSSLSNETDRLVHWCHGAPGVIHVLLQAYQ 336
>ref|NP_666229.1| hypothetical protein LOC227618 [Mus musculus]
Length = 331
Score = 109 bits (273), Expect = 6e-24
Identities = 62/129 (48%), Positives = 70/129 (54%), Gaps = 1/129 (0%)
Frame = +2
Query: 131 VWTQXXXXXXXXXXXXXXDCPEACVCAPGGQANCSWRALPAVPGGLRKSVRILLLDHNRV 310
VWTQ +CPEAC C+ GG+ANCS ALPAVP L VR LLLDHNRV
Sbjct: 24 VWTQEDIGTAPSKSPVAPECPEACSCSLGGKANCSALALPAVPADLSWQVRSLLLDHNRV 83
Query: 311 XXXXXXXXXXXXXXXXXXXHENRLRWMHSWAFWGLGTLQHLYLSANQLEVLVPSTCVPQQ 490
ENRLR +H+ AFWGLG LQ L LS+NQLE L P T P +
Sbjct: 84 SALPPGAFANAGALLYLDLRENRLRSVHARAFWGLGVLQWLDLSSNQLETLPPGTFAPLR 143
Query: 491 CAA-LPLAG 514
+ L LAG
Sbjct: 144 ALSFLSLAG 152
>ref|NP_775590.1| LanC lantibiotic synthetase component C-like 3 [Mus musculus]
Length = 420
Score = 84.7 bits (208), Expect = 2e-16
Identities = 49/161 (30%), Positives = 82/161 (50%), Gaps = 3/161 (1%)
Frame = +3
Query: 555 TRTHCSCHSIFTTAKYLPTKRNFRQETPLMYDWYRDYYVGAAHGLSRIYYYLMHPSLQVS 734
T+ C +I + K K+ R+ PLMY +Y Y+GAAHGLS I L+ +
Sbjct: 196 TQIKAICQAILDSGKQYALKK--RKPFPLMYSYYGTEYLGAAHGLSSILQMLLSYQEHLK 253
Query: 735 HAKLQSLVKPSVDYVCQLKFPFGNYPPCVDNTPDL---LVHWCHGSPGVIYMLIQAYKVF 905
+ + LV+ SVD++ + + N+PP + T + LVHWCHG+PG+ Y+ +AY +
Sbjct: 254 PSD-RELVRQSVDFLMEQEQNC-NWPPELGETIERENELVHWCHGAPGIAYLFAKAYLIS 311
Query: 906 REDRYLNDAYQCANVIWXXXXXXXXXXXCPALPGTPSLLTL 1028
++ +YL+ +C + W C + G+ + L
Sbjct: 312 KKPQYLDTCIRCGELTWQKGLLKKGPGICHGVAGSAYVFLL 352
Database: RefSeqMP
Posted date: Aug 2, 2006 12:58 AM
Number of letters in database: 21,768,885
Number of sequences in database: 45,328
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 60,821,765
Number of Sequences: 45328
Number of extensions: 1599779
Number of successful extensions: 6118
Number of sequences better than 1.0e-05: 5
Number of HSP's better than 0.0 without gapping: 4760
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6027
length of database: 21,768,885
effective HSP length: 106
effective length of database: 16,964,117
effective search space used: 5564230376
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)