BLASTX 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= 20060611S-056803 (576 letters) Database: RefSeqSP 1040 sequences; 434,620 total letters Searching...done Score E Sequences producing significant alignments: (bits) Value Alignment gi|NP_999238.1| 20-beta-hydroxysteroid dehydrogenase [Sus scrofa] 172 4e-45 Alignment gi|NP_999184.1| carbonyl reductase/NADP-retinol dehydrogenase [... 45 2e-06 >ref|NP_999238.1| 20-beta-hydroxysteroid dehydrogenase [Sus scrofa] Length = 289 Score = 172 bits (437), Expect = 4e-45 Identities = 93/110 (84%), Positives = 96/110 (87%) Frame = +3 Query: 147 MSSNTRVALVTGANKGIGFSILRDLCRQIAGDVVLTARDVARGQAAVKHLQAEGLSPRFH 326 MSSNTRVALVTGANKGIGF+I+RDLCRQ AGDVVLTARDVARGQAAVK LQAEGLSPRFH Sbjct: 1 MSSNTRVALVTGANKGIGFAIVRDLCRQFAGDVVLTARDVARGQAAVKQLQAEGLSPRFH 60 Query: 327 QLDIIDLQSKLALCDFLRKEYGGLDVLVKNAAIAFPIGTIPHRFPDLAEL 476 QLDIIDLQS ALCDFLRKEYGGLDVLV NAAIAF + P F AEL Sbjct: 61 QLDIIDLQSIRALCDFLRKEYGGLDVLVNNAAIAFQLDN-PTPFHIQAEL 109 >ref|NP_999184.1| carbonyl reductase/NADP-retinol dehydrogenase [Sus scrofa] Length = 260 Score = 44.7 bits (104), Expect = 2e-06 Identities = 31/88 (35%), Positives = 44/88 (50%) Frame = +3 Query: 162 RVALVTGANKGIGFSILRDLCRQIAGDVVLTARDVARGQAAVKHLQAEGLSPRFHQLDII 341 +VALVT + GIG +I R L Q VV+++R V LQ EGLS + Sbjct: 15 KVALVTASTDGIGLAIARRLA-QDGAHVVVSSRKQENVDRTVATLQGEGLSVTGTVCHVG 73 Query: 342 DLQSKLALCDFLRKEYGGLDVLVKNAAI 425 + + L +GG+D+LV NAA+ Sbjct: 74 KAEDRERLVAMAVNLHGGVDILVSNAAV 101 Database: RefSeqSP Posted date: Aug 1, 2006 7:14 PM Number of letters in database: 434,620 Number of sequences in database: 1040 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 592,821 Number of Sequences: 1040 Number of extensions: 16477 Number of successful extensions: 79 Number of sequences better than 1.0e-05: 2 Number of HSP's better than 0.0 without gapping: 71 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 78 length of database: 434,620 effective HSP length: 72 effective length of database: 359,740 effective search space used: 42809060 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
Search to RefSeqBP
BLASTX 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= 20060611S-056803 (576 letters) Database: RefSeqBP 33,508 sequences; 16,112,626 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Alignment gi|NP_001030258.1| 20-beta-hydroxysteroid dehydrogenase-like [B... 154 6e-38 Alignment gi|XP_869745.1| PREDICTED: similar to carbonyl reductase 3 isof... 148 2e-36 Alignment gi|NP_001029685.1| carbonyl reductase 1 [Bos taurus] 141 3e-34 Alignment gi|XP_874747.1| PREDICTED: similar to Carbonyl reductase [NADPH... 130 7e-31 Alignment gi|NP_899207.1| double substrate-specificity short chain dehydr... 49 3e-06 Alignment gi|NP_777247.1| NADPH-dependent retinol dehydrogenase/reductase... 49 3e-06 Alignment gi|XP_584629.2| PREDICTED: similar to Retinol dehydrogenase 13,... 48 4e-06 Alignment gi|XP_584642.2| PREDICTED: similar to retinol dehydrogenase 11 ... 48 6e-06 >ref|NP_001030258.1| 20-beta-hydroxysteroid dehydrogenase-like [Bos taurus] Length = 286 Score = 154 bits (388), Expect = 6e-38 Identities = 83/110 (75%), Positives = 92/110 (83%) Frame = +3 Query: 147 MSSNTRVALVTGANKGIGFSILRDLCRQIAGDVVLTARDVARGQAAVKHLQAEGLSPRFH 326 MSS+TRVALVTGANKG+GF+I+RDLCR+ GDVVLTARD ARG+AAV+ LQAEGLSPRFH Sbjct: 1 MSSSTRVALVTGANKGLGFAIVRDLCRRFPGDVVLTARDEARGRAAVQQLQAEGLSPRFH 60 Query: 327 QLDIIDLQSKLALCDFLRKEYGGLDVLVKNAAIAFPIGTIPHRFPDLAEL 476 QLDI DLQS AL DFLRKEYGGLDVLV NAAIAF + P P AE+ Sbjct: 61 QLDITDLQSIHALRDFLRKEYGGLDVLVNNAAIAFQLSD-PTPTPIKAEM 109 >ref|XP_869745.1| PREDICTED: similar to carbonyl reductase 3 isoform 2 [Bos taurus] Length = 277 Score = 148 bits (374), Expect = 2e-36 Identities = 78/95 (82%), Positives = 83/95 (87%) Frame = +3 Query: 147 MSSNTRVALVTGANKGIGFSILRDLCRQIAGDVVLTARDVARGQAAVKHLQAEGLSPRFH 326 MSS TRVALVTGANKGIGF+I RDLCR+ GDVVLTARD ARG+AAV+ LQAEGLSPRFH Sbjct: 1 MSSYTRVALVTGANKGIGFAIARDLCREFPGDVVLTARDKARGRAAVQQLQAEGLSPRFH 60 Query: 327 QLDIIDLQSKLALCDFLRKEYGGLDVLVKNAAIAF 431 QLDI DLQS AL DFLRKEYGGL+VLV NA IAF Sbjct: 61 QLDIDDLQSIRALRDFLRKEYGGLNVLVNNAGIAF 95 >ref|NP_001029685.1| carbonyl reductase 1 [Bos taurus] Length = 277 Score = 141 bits (356), Expect = 3e-34 Identities = 75/95 (78%), Positives = 81/95 (85%) Frame = +3 Query: 147 MSSNTRVALVTGANKGIGFSILRDLCRQIAGDVVLTARDVARGQAAVKHLQAEGLSPRFH 326 MSS+ VALVTGANKGIGF I+RDLCR+ +GDVVLTARD ARG+AAV+ LQAEGLSP FH Sbjct: 1 MSSSNCVALVTGANKGIGFVIVRDLCRRFSGDVVLTARDEARGRAAVQQLQAEGLSPLFH 60 Query: 327 QLDIIDLQSKLALCDFLRKEYGGLDVLVKNAAIAF 431 QLDI D QS AL DFLRKEYGGLDVLV NA IAF Sbjct: 61 QLDIDDRQSIRALRDFLRKEYGGLDVLVNNAGIAF 95 >ref|XP_874747.1| PREDICTED: similar to Carbonyl reductase [NADPH] 1 (NADPH-dependent carbonyl reductase 1) (Prostaglandin-E(2) 9-reductase) (Prostaglandin 9-ketoreductase) (15-hydroxyprostaglandin dehydrogenase [NADP+]) [Bos taurus] Length = 277 Score = 130 bits (327), Expect = 7e-31 Identities = 70/95 (73%), Positives = 78/95 (82%) Frame = +3 Query: 147 MSSNTRVALVTGANKGIGFSILRDLCRQIAGDVVLTARDVARGQAAVKHLQAEGLSPRFH 326 MSS+TRVALVTGANKG+GF+I+R L GDVVLTA D A+G+AAV+ LQA+GLSP FH Sbjct: 1 MSSSTRVALVTGANKGLGFAIVRALAGGFQGDVVLTAPDEAQGRAAVQQLQAQGLSPLFH 60 Query: 327 QLDIIDLQSKLALCDFLRKEYGGLDVLVKNAAIAF 431 QLDI D QS AL DFLRKEYGGLDVLV NA IAF Sbjct: 61 QLDIDDRQSIRALRDFLRKEYGGLDVLVNNAGIAF 95 >ref|NP_899207.1| double substrate-specificity short chain dehydrogenase/reductase 2 [Bos taurus] Length = 316 Score = 48.9 bits (115), Expect = 3e-06 Identities = 29/90 (32%), Positives = 49/90 (54%), Gaps = 2/90 (2%) Frame = +3 Query: 162 RVALVTGANKGIGFSILRDLCRQIAGDVVLTARDVARGQAAVKHLQAEGLSPR--FHQLD 335 +V ++TGAN GIG R+L R+ V + RDV +G++A +QA+ + + +LD Sbjct: 40 KVVVITGANTGIGKETARELARR-GARVYIACRDVLKGESAASEIQADTKNSQVLVRKLD 98 Query: 336 IIDLQSKLALCDFLRKEYGGLDVLVKNAAI 425 + D +S A + E L +L+ NA + Sbjct: 99 LSDTKSIRAFAEGFLAEEKQLHILINNAGV 128 >ref|NP_777247.1| NADPH-dependent retinol dehydrogenase/reductase [Bos taurus] Length = 260 Score = 48.9 bits (115), Expect = 3e-06 Identities = 33/97 (34%), Positives = 52/97 (53%) Frame = +3 Query: 156 NTRVALVTGANKGIGFSILRDLCRQIAGDVVLTARDVARGQAAVKHLQAEGLSPRFHQLD 335 + +VALVT + GIGF+I R L Q VV+++R AV L+ EGLS Sbjct: 13 DNKVALVTASTDGIGFAIARRLA-QDGAHVVVSSRKQQNVDRAVATLKGEGLSVTGTVCH 71 Query: 336 IIDLQSKLALCDFLRKEYGGLDVLVKNAAIAFPIGTI 446 + + + L K +GG+D+L+ NAA++ G++ Sbjct: 72 VGKAEDRERLVATAVKLHGGVDILISNAAVSPFFGSL 108 >ref|XP_584629.2| PREDICTED: similar to Retinol dehydrogenase 13, partial [Bos taurus] Length = 148 Score = 48.1 bits (113), Expect = 4e-06 Identities = 28/90 (31%), Positives = 51/90 (56%), Gaps = 2/90 (2%) Frame = +3 Query: 162 RVALVTGANKGIGFSILRDLCRQIAGDVVLTARDVARGQAAVKHLQAEGLSPRFH--QLD 335 + +VTGAN GIG +L ++ G+++L RD+ + +AA K ++ E L+ R + LD Sbjct: 39 KTVIVTGANTGIGKQTALELAKR-GGNIILACRDMEKCEAAAKEIRGETLNHRVNARHLD 97 Query: 336 IIDLQSKLALCDFLRKEYGGLDVLVKNAAI 425 + L+S + +E + +L+ NAA+ Sbjct: 98 LASLKSIREFAAKVTEEEEHVHILINNAAV 127 >ref|XP_584642.2| PREDICTED: similar to retinol dehydrogenase 11 (predicted) [Bos taurus] Length = 330 Score = 47.8 bits (112), Expect = 6e-06 Identities = 36/100 (36%), Positives = 53/100 (53%), Gaps = 4/100 (4%) Frame = +3 Query: 162 RVALVTGANKGIGFSILRDLCRQIAGDVVLTARDVARGQAAVKHLQAEGLSPRFHQLDII 341 + A+VTGAN GIG ++ ++L + V+L R RGQ A+ +QA S R L + Sbjct: 50 KTAVVTGANSGIGKAVSQELAHR-GARVILACRSRERGQQALAEIQATSKSNRL-LLGEV 107 Query: 342 DLQSKLALCDF---LRKEYGGLDVLVKNAAI-AFPIGTIP 449 DL S ++ F L +E + +LV NAA+ FP P Sbjct: 108 DLSSMASIRSFAQRLLQECPEIHLLVNNAAVCGFPTTLTP 147 Database: RefSeqBP Posted date: Aug 1, 2006 7:14 PM Number of letters in database: 16,112,626 Number of sequences in database: 33,508 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 22,116,233 Number of Sequences: 33508 Number of extensions: 638818 Number of successful extensions: 3632 Number of sequences better than 1.0e-05: 8 Number of HSP's better than 0.0 without gapping: 3082 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3611 length of database: 16,112,626 effective HSP length: 96 effective length of database: 12,895,858 effective search space used: 1225106510 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
Search to RefSeqCP
BLASTX 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= 20060611S-056803 (576 letters) Database: RefSeqCP 33,732 sequences; 19,266,565 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Alignment gi|XP_544873.2| PREDICTED: similar to carbonyl reductase 3 [Can... 150 1e-36 Alignment gi|XP_852675.1| PREDICTED: similar to Carbonyl reductase [NADPH... 145 2e-35 Alignment gi|XP_535589.2| PREDICTED: similar to Carbonyl reductase [NADPH... 134 4e-32 Alignment gi|XP_537903.1| PREDICTED: similar to Carbonyl reductase [NADPH... 132 2e-31 Alignment gi|XP_547738.2| PREDICTED: similar to dehydrogenase/reductase (... 55 4e-08 Alignment gi|XP_533000.2| PREDICTED: similar to Retinol dehydrogenase 12 ... 53 2e-07 Alignment gi|XP_537378.1| PREDICTED: similar to peroxisomal short-chain a... 49 4e-06 Alignment gi|XP_859476.1| PREDICTED: similar to peroxisomal short-chain a... 49 4e-06 Alignment gi|XP_854127.1| PREDICTED: similar to Retinol dehydrogenase 13 ... 49 4e-06 Alignment gi|XP_547866.2| PREDICTED: similar to retinol dehydrogenase 12 ... 47 9e-06 >ref|XP_544873.2| PREDICTED: similar to carbonyl reductase 3 [Canis familiaris] Length = 484 Score = 150 bits (378), Expect = 1e-36 Identities = 80/106 (75%), Positives = 88/106 (83%) Frame = +3 Query: 114 SPRQSTYTTPAMSSNTRVALVTGANKGIGFSILRDLCRQIAGDVVLTARDVARGQAAVKH 293 SPR PAMSS +RVALVTGAN+GIGF+I R+LCRQ +GDVVLTARD ARG+AAV+ Sbjct: 197 SPRAPGPPLPAMSSCSRVALVTGANRGIGFAIARELCRQFSGDVVLTARDEARGRAAVQQ 256 Query: 294 LQAEGLSPRFHQLDIIDLQSKLALCDFLRKEYGGLDVLVKNAAIAF 431 LQAEGLSPRFH LDI DLQS AL DFLRKEYGGL+VLV NA IAF Sbjct: 257 LQAEGLSPRFHLLDIDDLQSIRALRDFLRKEYGGLNVLVNNAGIAF 302 >ref|XP_852675.1| PREDICTED: similar to Carbonyl reductase [NADPH] 1 (NADPH-dependent carbonyl reductase 1) (Prostaglandin-E(2) 9-reductase) (Prostaglandin 9-ketoreductase) (15-hydroxyprostaglandin dehydrogenase [NADP+]) [Canis familiaris] Length = 277 Score = 145 bits (366), Expect = 2e-35 Identities = 76/95 (80%), Positives = 83/95 (87%) Frame = +3 Query: 147 MSSNTRVALVTGANKGIGFSILRDLCRQIAGDVVLTARDVARGQAAVKHLQAEGLSPRFH 326 MS+ +RVALVTGANKGIGF+I R+LCRQ +GDVVLTARD ARG+AAV+ LQAEGLSPRFH Sbjct: 1 MSAASRVALVTGANKGIGFAIARELCRQFSGDVVLTARDEARGRAAVQQLQAEGLSPRFH 60 Query: 327 QLDIIDLQSKLALCDFLRKEYGGLDVLVKNAAIAF 431 LDI DLQS AL DFLRKEYGGLDVLV NA IAF Sbjct: 61 LLDIDDLQSIRALRDFLRKEYGGLDVLVNNAGIAF 95 >ref|XP_535589.2| PREDICTED: similar to Carbonyl reductase [NADPH] 1 (NADPH-dependent carbonyl reductase 1) (Prostaglandin-E(2) 9-reductase) (Prostaglandin 9-ketoreductase) (15-hydroxyprostaglandin dehydrogenase [NADP+]) [Canis familiaris] Length = 292 Score = 134 bits (338), Expect = 4e-32 Identities = 74/110 (67%), Positives = 84/110 (76%) Frame = +3 Query: 147 MSSNTRVALVTGANKGIGFSILRDLCRQIAGDVVLTARDVARGQAAVKHLQAEGLSPRFH 326 MSS RVA+VTGANKG+GF+I+RDLCR +GDVVLTARD ARG+AAV+ LQ++GLSPRFH Sbjct: 1 MSSAPRVAVVTGANKGLGFAIMRDLCRNFSGDVVLTARDEARGRAAVQQLQSKGLSPRFH 60 Query: 327 QLDIIDLQSKLALCDFLRKEYGGLDVLVKNAAIAFPIGTIPHRFPDLAEL 476 LDI DLQS L DFL KEY GLDVLV NA I F G P P AE+ Sbjct: 61 LLDIDDLQSICTLRDFLCKEYRGLDVLVNNAGINFDTGD-PTPLPIQAEV 109 >ref|XP_537903.1| PREDICTED: similar to Carbonyl reductase [NADPH] 1 (NADPH-dependent carbonyl reductase 1) (Prostaglandin-E(2) 9-reductase) (Prostaglandin 9-ketoreductase) (15-hydroxyprostaglandin dehydrogenase [NADP+]) [Canis familiaris] Length = 296 Score = 132 bits (332), Expect = 2e-31 Identities = 68/95 (71%), Positives = 78/95 (82%) Frame = +3 Query: 147 MSSNTRVALVTGANKGIGFSILRDLCRQIAGDVVLTARDVARGQAAVKHLQAEGLSPRFH 326 MS RVA+VTGANKG+GF+I RDLCR GDV+LT+RD ARG+AAV+HL+AEGLSPRFH Sbjct: 1 MSLALRVAVVTGANKGLGFAITRDLCRNFPGDVILTSRDEARGRAAVQHLKAEGLSPRFH 60 Query: 327 QLDIIDLQSKLALCDFLRKEYGGLDVLVKNAAIAF 431 LDI +LQS AL DFL +EYGGLDVLV NA I F Sbjct: 61 LLDIDNLQSIRALRDFLWEEYGGLDVLVNNAGIVF 95 >ref|XP_547738.2| PREDICTED: similar to dehydrogenase/reductase (SDR family) member 2 isoform 2 [Canis familiaris] Length = 370 Score = 55.1 bits (131), Expect = 4e-08 Identities = 37/88 (42%), Positives = 48/88 (54%) Frame = +3 Query: 162 RVALVTGANKGIGFSILRDLCRQIAGDVVLTARDVARGQAAVKHLQAEGLSPRFHQLDII 341 RVA+VTGA GIGF+I R L R VV+++R AV LQ EGLS + Sbjct: 126 RVAVVTGATDGIGFAIARRLARD-GAHVVVSSRKQHNVDRAVAALQGEGLSVTGTVCHVG 184 Query: 342 DLQSKLALCDFLRKEYGGLDVLVKNAAI 425 + + L + + YGGLD LV NAA+ Sbjct: 185 KAEDRERLVATVLEHYGGLDFLVCNAAV 212 >ref|XP_533000.2| PREDICTED: similar to Retinol dehydrogenase 12 [Canis familiaris] Length = 596 Score = 52.8 bits (125), Expect = 2e-07 Identities = 34/94 (36%), Positives = 56/94 (59%), Gaps = 3/94 (3%) Frame = +3 Query: 162 RVALVTGANKGIGFSILRDLCRQIAGDVVLTARDVARGQAAVKHLQ--AEGLSPRFHQLD 335 + A+VTGAN GIG ++ ++L R+ V+L R+ RGQ A+ +Q ++G Q+D Sbjct: 316 KTAVVTGANSGIGKAVCQELARR-GARVILACRNWERGQKALAEIQVASKGTCLLLGQVD 374 Query: 336 IIDLQSKLALCDFLRKEYGGLDVLVKNAAIA-FP 434 + + S + +L +EY + +LV NAAI+ FP Sbjct: 375 LSSMASIRSFARWLLQEYPEIHLLVNNAAISGFP 408 >ref|XP_537378.1| PREDICTED: similar to peroxisomal short-chain alcohol dehydrogenase isoform 1 [Canis familiaris] Length = 279 Score = 48.5 bits (114), Expect = 4e-06 Identities = 32/88 (36%), Positives = 46/88 (52%) Frame = +3 Query: 162 RVALVTGANKGIGFSILRDLCRQIAGDVVLTARDVARGQAAVKHLQAEGLSPRFHQLDII 341 +VALVT + GIGF+I R L R VV+++R AV LQ EGLS + Sbjct: 34 KVALVTASTDGIGFAIARRLARD-GAHVVVSSRKQHNVDRAVAALQGEGLSVTGTVCHVG 92 Query: 342 DLQSKLALCDFLRKEYGGLDVLVKNAAI 425 + + L +GG+D+L+ NAA+ Sbjct: 93 KAEDRERLVATAVNLHGGIDILISNAAV 120 >ref|XP_859476.1| PREDICTED: similar to peroxisomal short-chain alcohol dehydrogenase isoform 2 [Canis familiaris] Length = 164 Score = 48.5 bits (114), Expect = 4e-06 Identities = 32/88 (36%), Positives = 46/88 (52%) Frame = +3 Query: 162 RVALVTGANKGIGFSILRDLCRQIAGDVVLTARDVARGQAAVKHLQAEGLSPRFHQLDII 341 +VALVT + GIGF+I R L R VV+++R AV LQ EGLS + Sbjct: 34 KVALVTASTDGIGFAIARRLARD-GAHVVVSSRKQHNVDRAVAALQGEGLSVTGTVCHVG 92 Query: 342 DLQSKLALCDFLRKEYGGLDVLVKNAAI 425 + + L +GG+D+L+ NAA+ Sbjct: 93 KAEDRERLVATAVNLHGGIDILISNAAV 120 >ref|XP_854127.1| PREDICTED: similar to Retinol dehydrogenase 13 [Canis familiaris] Length = 334 Score = 48.5 bits (114), Expect = 4e-06 Identities = 30/90 (33%), Positives = 50/90 (55%), Gaps = 2/90 (2%) Frame = +3 Query: 162 RVALVTGANKGIGFSILRDLCRQIAGDVVLTARDVARGQAAVKHLQAEGLSPRFH--QLD 335 + +VTGAN GIG +L R+ G+++L RD+ + +AA K ++ E L+ R LD Sbjct: 39 KTVIVTGANTGIGKQTALELARR-GGNIILACRDMEKCEAAAKEIRGETLNHRVSAWHLD 97 Query: 336 IIDLQSKLALCDFLRKEYGGLDVLVKNAAI 425 + L+S + +E + +LV NAA+ Sbjct: 98 LASLKSIREFAAKIIEEEEQVHILVNNAAV 127 >ref|XP_547866.2| PREDICTED: similar to retinol dehydrogenase 12 (all-trans and 9-cis) [Canis familiaris] Length = 303 Score = 47.4 bits (111), Expect = 9e-06 Identities = 28/90 (31%), Positives = 49/90 (54%), Gaps = 2/90 (2%) Frame = +3 Query: 162 RVALVTGANKGIGFSILRDLCRQIAGDVVLTARDVARGQAAVKHLQAEGLSPR--FHQLD 335 +V ++TGAN GIG R+L R+ V + RDV +G++A ++A+ + + +LD Sbjct: 27 KVVVITGANTGIGKETARELARR-GARVYIACRDVLKGESAASEIRADTKNSQVLVRKLD 85 Query: 336 IIDLQSKLALCDFLRKEYGGLDVLVKNAAI 425 + D +S A + E L +L+ NA + Sbjct: 86 LSDTKSIRAFAEGFLAEEKQLHILINNAGV 115 Database: RefSeqCP Posted date: Aug 1, 2006 9:25 PM Number of letters in database: 19,266,565 Number of sequences in database: 33,732 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 25,860,855 Number of Sequences: 33732 Number of extensions: 742226 Number of successful extensions: 4040 Number of sequences better than 1.0e-05: 10 Number of HSP's better than 0.0 without gapping: 3402 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3996 length of database: 19,266,565 effective HSP length: 97 effective length of database: 15,994,561 effective search space used: 1503488734 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
Search to RefSeqHP
BLASTX 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= 20060611S-056803 (576 letters) Database: RefSeqHP 39,411 sequences; 17,774,539 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Alignment gi|NP_001227.1| carbonyl reductase 3 [Homo sapiens] 148 3e-36 Alignment gi|NP_001748.1| carbonyl reductase 1 [Homo sapiens] 146 1e-35 Alignment gi|NP_932349.1| dehydrogenase/reductase (SDR family) member 4 l... 51 7e-07 Alignment gi|XP_950350.1| PREDICTED: similar to dehydrogenase/reductase (... 51 7e-07 Alignment gi|XP_950347.1| PREDICTED: similar to dehydrogenase/reductase (... 51 7e-07 Alignment gi|XP_950345.1| PREDICTED: similar to dehydrogenase/reductase (... 51 7e-07 Alignment gi|XP_946607.1| PREDICTED: similar to peroxisomal short-chain a... 51 7e-07 Alignment gi|NP_066284.2| peroxisomal short-chain alcohol dehydrogenase [... 50 1e-06 Alignment gi|XP_371503.3| PREDICTED: similar to short-chain dehydrogenase... 48 5e-06 Alignment gi|XP_947127.1| PREDICTED: similar to short-chain dehydrogenase... 48 5e-06 >ref|NP_001227.1| carbonyl reductase 3 [Homo sapiens] Length = 277 Score = 148 bits (374), Expect = 3e-36 Identities = 77/95 (81%), Positives = 85/95 (89%) Frame = +3 Query: 147 MSSNTRVALVTGANKGIGFSILRDLCRQIAGDVVLTARDVARGQAAVKHLQAEGLSPRFH 326 MSS +RVALVTGAN+GIG +I R+LCRQ +GDVVLTARDVARGQAAV+ LQAEGLSPRFH Sbjct: 1 MSSCSRVALVTGANRGIGLAIARELCRQFSGDVVLTARDVARGQAAVQQLQAEGLSPRFH 60 Query: 327 QLDIIDLQSKLALCDFLRKEYGGLDVLVKNAAIAF 431 QLDI DLQS AL DFLRKEYGGL+VLV NAA+AF Sbjct: 61 QLDIDDLQSIRALRDFLRKEYGGLNVLVNNAAVAF 95 >ref|NP_001748.1| carbonyl reductase 1 [Homo sapiens] Length = 277 Score = 146 bits (368), Expect = 1e-35 Identities = 76/97 (78%), Positives = 81/97 (83%) Frame = +3 Query: 147 MSSNTRVALVTGANKGIGFSILRDLCRQIAGDVVLTARDVARGQAAVKHLQAEGLSPRFH 326 MSS VALVTG NKGIG +I+RDLCR +GDVVLTARDV RGQAAV+ LQAEGLSPRFH Sbjct: 1 MSSGIHVALVTGGNKGIGLAIVRDLCRLFSGDVVLTARDVTRGQAAVQQLQAEGLSPRFH 60 Query: 327 QLDIIDLQSKLALCDFLRKEYGGLDVLVKNAAIAFPI 437 QLDI DLQS AL DFLRKEYGGLDVLV NA IAF + Sbjct: 61 QLDIDDLQSIRALRDFLRKEYGGLDVLVNNAGIAFKV 97 >ref|NP_932349.1| dehydrogenase/reductase (SDR family) member 4 like 2 [Homo sapiens] Length = 230 Score = 50.8 bits (120), Expect = 7e-07 Identities = 34/88 (38%), Positives = 48/88 (54%) Frame = +3 Query: 162 RVALVTGANKGIGFSILRDLCRQIAGDVVLTARDVARGQAAVKHLQAEGLSPRFHQLDII 341 +VALVT + GIGF+I R L + A VV+++R AV LQ EGLS + Sbjct: 31 KVALVTASTDGIGFAIARRLAQDRA-HVVVSSRKQQNVDQAVATLQGEGLSVTGTVCHVG 89 Query: 342 DLQSKLALCDFLRKEYGGLDVLVKNAAI 425 + + L K +GG+D+LV NAA+ Sbjct: 90 KAEDRERLVAMAVKLHGGIDILVSNAAV 117 >ref|XP_950350.1| PREDICTED: similar to dehydrogenase/reductase (SDR family) member 4 like 2 isoform 14 [Homo sapiens] Length = 190 Score = 50.8 bits (120), Expect = 7e-07 Identities = 34/88 (38%), Positives = 48/88 (54%) Frame = +3 Query: 162 RVALVTGANKGIGFSILRDLCRQIAGDVVLTARDVARGQAAVKHLQAEGLSPRFHQLDII 341 +VALVT + GIGF+I R L + A VV+++R AV LQ EGLS + Sbjct: 31 KVALVTASTDGIGFAIARRLAQDRA-HVVVSSRKQQNVDQAVATLQGEGLSVTGTVCHVG 89 Query: 342 DLQSKLALCDFLRKEYGGLDVLVKNAAI 425 + + L K +GG+D+LV NAA+ Sbjct: 90 KAEDRERLVAMAVKLHGGIDILVSNAAV 117 >ref|XP_950347.1| PREDICTED: similar to dehydrogenase/reductase (SDR family) member 4 like 2 isoform 12 [Homo sapiens] Length = 186 Score = 50.8 bits (120), Expect = 7e-07 Identities = 34/88 (38%), Positives = 48/88 (54%) Frame = +3 Query: 162 RVALVTGANKGIGFSILRDLCRQIAGDVVLTARDVARGQAAVKHLQAEGLSPRFHQLDII 341 +VALVT + GIGF+I R L + A VV+++R AV LQ EGLS + Sbjct: 31 KVALVTASTDGIGFAIARRLAQDRA-HVVVSSRKQQNVDQAVATLQGEGLSVTGTVCHVG 89 Query: 342 DLQSKLALCDFLRKEYGGLDVLVKNAAI 425 + + L K +GG+D+LV NAA+ Sbjct: 90 KAEDRERLVAMAVKLHGGIDILVSNAAV 117 >ref|XP_950345.1| PREDICTED: similar to dehydrogenase/reductase (SDR family) member 4 like 2 isoform 11 [Homo sapiens] Length = 161 Score = 50.8 bits (120), Expect = 7e-07 Identities = 34/88 (38%), Positives = 48/88 (54%) Frame = +3 Query: 162 RVALVTGANKGIGFSILRDLCRQIAGDVVLTARDVARGQAAVKHLQAEGLSPRFHQLDII 341 +VALVT + GIGF+I R L + A VV+++R AV LQ EGLS + Sbjct: 31 KVALVTASTDGIGFAIARRLAQDRA-HVVVSSRKQQNVDQAVATLQGEGLSVTGTVCHVG 89 Query: 342 DLQSKLALCDFLRKEYGGLDVLVKNAAI 425 + + L K +GG+D+LV NAA+ Sbjct: 90 KAEDRERLVAMAVKLHGGIDILVSNAAV 117 >ref|XP_946607.1| PREDICTED: similar to peroxisomal short-chain alcohol dehydrogenase isoform 1 [Homo sapiens] Length = 276 Score = 50.8 bits (120), Expect = 7e-07 Identities = 34/88 (38%), Positives = 48/88 (54%) Frame = +3 Query: 162 RVALVTGANKGIGFSILRDLCRQIAGDVVLTARDVARGQAAVKHLQAEGLSPRFHQLDII 341 +VALVT + GIGF+I R L + A VV+++R AV LQ EGLS + Sbjct: 31 KVALVTASTDGIGFAIARRLAQDRA-HVVVSSRKQQNVDQAVATLQGEGLSVTGTVCHVG 89 Query: 342 DLQSKLALCDFLRKEYGGLDVLVKNAAI 425 + + L K +GG+D+LV NAA+ Sbjct: 90 KAEDRERLVAMAVKLHGGIDILVSNAAV 117 >ref|NP_066284.2| peroxisomal short-chain alcohol dehydrogenase [Homo sapiens] Length = 278 Score = 50.4 bits (119), Expect = 1e-06 Identities = 36/95 (37%), Positives = 50/95 (52%) Frame = +3 Query: 162 RVALVTGANKGIGFSILRDLCRQIAGDVVLTARDVARGQAAVKHLQAEGLSPRFHQLDII 341 +VALVT + GIGF+I R L Q VV+++R AV LQ EGLS + Sbjct: 33 KVALVTASTDGIGFAIARRLA-QDGAHVVVSSRKQQNVDQAVATLQGEGLSVTGTVCHVG 91 Query: 342 DLQSKLALCDFLRKEYGGLDVLVKNAAIAFPIGTI 446 + + L K +GG+D+LV NAA+ G+I Sbjct: 92 KAEDRERLVATAVKLHGGIDILVSNAAVNPFFGSI 126 >ref|XP_371503.3| PREDICTED: similar to short-chain dehydrogenase/reductase 1 [Homo sapiens] Length = 891 Score = 48.1 bits (113), Expect = 5e-06 Identities = 36/99 (36%), Positives = 53/99 (53%), Gaps = 3/99 (3%) Frame = +3 Query: 162 RVALVTGANKGIGFSILRDLCRQIAGDVVLTARDVARGQAAVKHLQAEGLSPRFHQLDII 341 ++A+VTGAN GIG + +DL R V+LT + GQ A+ +QA S R L + Sbjct: 603 KIAIVTGANSGIGKVVSQDLAR-CGAQVILTCQSRECGQQALAEIQAASNSNRL-LLGEV 660 Query: 342 DLQSKLALCDFLRK---EYGGLDVLVKNAAIAFPIGTIP 449 DL S ++ F R+ E + +LV NA ++ G IP Sbjct: 661 DLSSMTSIRSFARRLLQENPEIHLLVNNAGVS---GMIP 696 >ref|XP_947127.1| PREDICTED: similar to short-chain dehydrogenase/reductase 1 [Homo sapiens] Length = 916 Score = 48.1 bits (113), Expect = 5e-06 Identities = 36/99 (36%), Positives = 53/99 (53%), Gaps = 3/99 (3%) Frame = +3 Query: 162 RVALVTGANKGIGFSILRDLCRQIAGDVVLTARDVARGQAAVKHLQAEGLSPRFHQLDII 341 ++A+VTGAN GIG + +DL R V+LT + GQ A+ +QA S R L + Sbjct: 628 KIAIVTGANSGIGKVVSQDLAR-CGAQVILTCQSRECGQQALAEIQAASNSNRL-LLGEV 685 Query: 342 DLQSKLALCDFLRK---EYGGLDVLVKNAAIAFPIGTIP 449 DL S ++ F R+ E + +LV NA ++ G IP Sbjct: 686 DLSSMTSIRSFARRLLQENPEIHLLVNNAGVS---GMIP 721 Database: RefSeqHP Posted date: Aug 2, 2006 12:57 AM Number of letters in database: 17,774,539 Number of sequences in database: 39,411 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 25,164,888 Number of Sequences: 39411 Number of extensions: 756725 Number of successful extensions: 4803 Number of sequences better than 1.0e-05: 10 Number of HSP's better than 0.0 without gapping: 3851 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4769 length of database: 17,774,539 effective HSP length: 96 effective length of database: 13,991,083 effective search space used: 1329152885 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
Search to RefSeqMP
BLASTX 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= 20060611S-056803 (576 letters) Database: RefSeqMP 45,328 sequences; 21,768,885 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Alignment gi|NP_766635.1| carbonyl reductase 3 [Mus musculus] 144 6e-35 Alignment gi|XP_359206.3| PREDICTED: similar to Carbonyl reductase [NADPH... 134 6e-32 Alignment gi|NP_031646.1| carbonyl reductase 1 [Mus musculus] 134 8e-32 Alignment gi|XP_487442.1| PREDICTED: similar to Carbonyl reductase [NADPH... 133 1e-31 Alignment gi|XP_989090.1| PREDICTED: similar to Carbonyl reductase [NADPH... 133 1e-31 Alignment gi|NP_780581.1| retinol dehydrogenase 13 (all-trans and 9-cis) ... 54 8e-08 Alignment gi|NP_067532.2| short-chain dehydrogenase/reductase 1 [Mus musc... 49 3e-06 Alignment gi|NP_076186.1| alcohol dehydrogenase PAN2 [Mus musculus] 48 6e-06 Alignment gi|NP_109611.1| NADPH-dependent retinol dehydrogenase/reductase... 48 6e-06 Alignment gi|NP_001033027.1| NADPH-dependent retinol dehydrogenase/reduct... 48 6e-06 >ref|NP_766635.1| carbonyl reductase 3 [Mus musculus] Length = 277 Score = 144 bits (363), Expect = 6e-35 Identities = 76/95 (80%), Positives = 83/95 (87%) Frame = +3 Query: 147 MSSNTRVALVTGANKGIGFSILRDLCRQIAGDVVLTARDVARGQAAVKHLQAEGLSPRFH 326 MSS +RVALVTGANKGIGF+I RDLCR+ +GDVVLTARD ARG+AAV+ LQAEGLSPRFH Sbjct: 1 MSSCSRVALVTGANKGIGFAITRDLCRKFSGDVVLTARDEARGRAAVQQLQAEGLSPRFH 60 Query: 327 QLDIIDLQSKLALCDFLRKEYGGLDVLVKNAAIAF 431 QLDI D QS AL DFLRKEYGGL+VLV NA IAF Sbjct: 61 QLDIDDPQSIRALRDFLRKEYGGLNVLVNNAGIAF 95 >ref|XP_359206.3| PREDICTED: similar to Carbonyl reductase [NADPH] 1 (NADPH-dependent carbonyl reductase 1) [Mus musculus] Length = 277 Score = 134 bits (337), Expect = 6e-32 Identities = 72/102 (70%), Positives = 81/102 (79%) Frame = +3 Query: 147 MSSNTRVALVTGANKGIGFSILRDLCRQIAGDVVLTARDVARGQAAVKHLQAEGLSPRFH 326 M S +R+ALVTGANKGIGF+I RDLC+Q +GDVVLTARD ARG AAV+ LQAEGL PRFH Sbjct: 1 MPSCSRIALVTGANKGIGFAITRDLCQQFSGDVVLTARDEARGLAAVQKLQAEGLIPRFH 60 Query: 327 QLDIIDLQSKLALCDFLRKEYGGLDVLVKNAAIAFPIGTIPH 452 QLDI D QS AL +FL KEYGGLDVLV NA IA+ + H Sbjct: 61 QLDINDPQSIHALRNFLLKEYGGLDVLVNNAGIAYKGTDLTH 102 >ref|NP_031646.1| carbonyl reductase 1 [Mus musculus] Length = 277 Score = 134 bits (336), Expect = 8e-32 Identities = 71/97 (73%), Positives = 78/97 (80%) Frame = +3 Query: 147 MSSNTRVALVTGANKGIGFSILRDLCRQIAGDVVLTARDVARGQAAVKHLQAEGLSPRFH 326 MSS+ VALVTGANKGIGF+I RDLCR+ +GDVVL ARD RGQ AV+ LQAEGLSPRFH Sbjct: 1 MSSSRPVALVTGANKGIGFAITRDLCRKFSGDVVLAARDEERGQTAVQKLQAEGLSPRFH 60 Query: 327 QLDIIDLQSKLALCDFLRKEYGGLDVLVKNAAIAFPI 437 QLDI + QS AL DFL KEYGGLDVLV A IAF + Sbjct: 61 QLDIDNPQSIRALRDFLLKEYGGLDVLVNKAGIAFKV 97 >ref|XP_487442.1| PREDICTED: similar to Carbonyl reductase [NADPH] 1 (NADPH-dependent carbonyl reductase 1) [Mus musculus] Length = 277 Score = 133 bits (335), Expect = 1e-31 Identities = 71/97 (73%), Positives = 79/97 (81%) Frame = +3 Query: 147 MSSNTRVALVTGANKGIGFSILRDLCRQIAGDVVLTARDVARGQAAVKHLQAEGLSPRFH 326 MS +RVALVTG NKGIGF I+RDLC++ +GDVVLTARD ARG AAV+ LQAEGL+PRFH Sbjct: 1 MSPCSRVALVTGGNKGIGFEIIRDLCQKFSGDVVLTARDEARGCAAVQKLQAEGLNPRFH 60 Query: 327 QLDIIDLQSKLALCDFLRKEYGGLDVLVKNAAIAFPI 437 QLDI D QS AL DFL KEY GLDVLV NA IAF + Sbjct: 61 QLDIDDPQSIHALRDFLLKEYKGLDVLVNNAGIAFKV 97 >ref|XP_989090.1| PREDICTED: similar to Carbonyl reductase [NADPH] 1 (NADPH-dependent carbonyl reductase 1) [Mus musculus] Length = 277 Score = 133 bits (335), Expect = 1e-31 Identities = 71/97 (73%), Positives = 79/97 (81%) Frame = +3 Query: 147 MSSNTRVALVTGANKGIGFSILRDLCRQIAGDVVLTARDVARGQAAVKHLQAEGLSPRFH 326 MS +RVALVTG NKGIGF I+RDLC++ +GDVVLTARD ARG AAV+ LQAEGL+PRFH Sbjct: 1 MSPCSRVALVTGGNKGIGFEIIRDLCQKFSGDVVLTARDEARGCAAVQKLQAEGLNPRFH 60 Query: 327 QLDIIDLQSKLALCDFLRKEYGGLDVLVKNAAIAFPI 437 QLDI D QS AL DFL KEY GLDVLV NA IAF + Sbjct: 61 QLDIDDPQSIHALRDFLLKEYKGLDVLVNNAGIAFKV 97 >ref|NP_780581.1| retinol dehydrogenase 13 (all-trans and 9-cis) [Mus musculus] Length = 334 Score = 54.3 bits (129), Expect = 8e-08 Identities = 33/91 (36%), Positives = 55/91 (60%), Gaps = 3/91 (3%) Frame = +3 Query: 162 RVALVTGANKGIGFSILRDLCRQIAGDVVLTARDVARGQAAVKHLQAEGLSPRFHQLDII 341 + +VTGAN GIG +L ++ G+V+L RD+ + + A K ++ E L+PR + + + Sbjct: 39 KTVIVTGANTGIGKQTALELAKR-GGNVILACRDMEKCEVAAKDIRGETLNPRV-RAERL 96 Query: 342 DLQSKLALCDFLR---KEYGGLDVLVKNAAI 425 DL S ++ +F R KE +D+LV NAA+ Sbjct: 97 DLASLKSIREFARKVIKEEERVDILVNNAAV 127 >ref|NP_067532.2| short-chain dehydrogenase/reductase 1 [Mus musculus] Length = 316 Score = 48.9 bits (115), Expect = 3e-06 Identities = 38/91 (41%), Positives = 52/91 (57%), Gaps = 3/91 (3%) Frame = +3 Query: 162 RVALVTGANKGIGFSILRDLCRQIAGDVVLTARDVARGQAAVKHLQA-EGLSPRF-HQLD 335 +VA+VTGAN GIG +DL Q V L RDV +G+ A + +QA G S F +LD Sbjct: 39 KVAIVTGANTGIGKETAKDLA-QRGARVYLACRDVDKGELAAREIQAVTGNSQVFVRKLD 97 Query: 336 IIDLQSKLALC-DFLRKEYGGLDVLVKNAAI 425 + D +S A DFL +E L +L+ NA + Sbjct: 98 LADTKSIRAFAKDFLAEE-KHLHLLINNAGV 127 >ref|NP_076186.1| alcohol dehydrogenase PAN2 [Mus musculus] Length = 334 Score = 48.1 bits (113), Expect = 6e-06 Identities = 34/100 (34%), Positives = 49/100 (49%), Gaps = 12/100 (12%) Frame = +3 Query: 162 RVALVTGANKGIGFSILRDLCRQIAGDVVLTARDVARGQAAVKHL-----QAEGLSPR-- 320 + L+TGAN G+G + +L R + V++ RD AR + A L QA G P Sbjct: 45 KTVLITGANSGLGRATAAELLR-LGARVIMGCRDRARAEEAAGQLRQELCQAGGAGPDGT 103 Query: 321 -----FHQLDIIDLQSKLALCDFLRKEYGGLDVLVKNAAI 425 +LD+ L+S A C L +E LDVL+ NA + Sbjct: 104 DGQLVVKELDLASLRSVRAFCQELLQEEPRLDVLINNAGV 143 >ref|NP_109611.1| NADPH-dependent retinol dehydrogenase/reductase isoform 2 [Mus musculus] Length = 216 Score = 48.1 bits (113), Expect = 6e-06 Identities = 32/90 (35%), Positives = 46/90 (51%) Frame = +3 Query: 156 NTRVALVTGANKGIGFSILRDLCRQIAGDVVLTARDVARGQAAVKHLQAEGLSPRFHQLD 335 + +VALVT + GIGF+I R L VV+++R AV LQ EGLS Sbjct: 32 SNKVALVTASTDGIGFAIARRLAED-GAHVVVSSRKQQNVDRAVATLQGEGLSVTGIVCH 90 Query: 336 IIDLQSKLALCDFLRKEYGGLDVLVKNAAI 425 + + + L K + G+D+LV NAA+ Sbjct: 91 VGKAEDREKLITTALKRHQGIDILVSNAAV 120 >ref|NP_001033027.1| NADPH-dependent retinol dehydrogenase/reductase isoform 1 [Mus musculus] Length = 279 Score = 48.1 bits (113), Expect = 6e-06 Identities = 32/90 (35%), Positives = 46/90 (51%) Frame = +3 Query: 156 NTRVALVTGANKGIGFSILRDLCRQIAGDVVLTARDVARGQAAVKHLQAEGLSPRFHQLD 335 + +VALVT + GIGF+I R L VV+++R AV LQ EGLS Sbjct: 32 SNKVALVTASTDGIGFAIARRLAED-GAHVVVSSRKQQNVDRAVATLQGEGLSVTGIVCH 90 Query: 336 IIDLQSKLALCDFLRKEYGGLDVLVKNAAI 425 + + + L K + G+D+LV NAA+ Sbjct: 91 VGKAEDREKLITTALKRHRGIDILVSNAAV 120 Database: RefSeqMP Posted date: Aug 2, 2006 12:58 AM Number of letters in database: 21,768,885 Number of sequences in database: 45,328 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 29,880,135 Number of Sequences: 45328 Number of extensions: 858861 Number of successful extensions: 4613 Number of sequences better than 1.0e-05: 10 Number of HSP's better than 0.0 without gapping: 3896 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4579 length of database: 21,768,885 effective HSP length: 98 effective length of database: 17,326,741 effective search space used: 1611386913 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)