Animal-Genome cDNA 20060611S-056803


Search to RefSeqSP

BLASTX 2.2.10 [Oct-19-2004]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20060611S-056803
         (576 letters)

Database: RefSeqSP 
           1040 sequences; 434,620 total letters

Searching...done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_999238.1| 20-beta-hydroxysteroid dehydrogenase [Sus scrofa]    172   4e-45
Alignment   gi|NP_999184.1| carbonyl reductase/NADP-retinol dehydrogenase [...    45   2e-06

>ref|NP_999238.1| 20-beta-hydroxysteroid dehydrogenase [Sus scrofa]
          Length = 289

 Score =  172 bits (437), Expect = 4e-45
 Identities = 93/110 (84%), Positives = 96/110 (87%)
 Frame = +3

Query: 147 MSSNTRVALVTGANKGIGFSILRDLCRQIAGDVVLTARDVARGQAAVKHLQAEGLSPRFH 326
           MSSNTRVALVTGANKGIGF+I+RDLCRQ AGDVVLTARDVARGQAAVK LQAEGLSPRFH
Sbjct: 1   MSSNTRVALVTGANKGIGFAIVRDLCRQFAGDVVLTARDVARGQAAVKQLQAEGLSPRFH 60

Query: 327 QLDIIDLQSKLALCDFLRKEYGGLDVLVKNAAIAFPIGTIPHRFPDLAEL 476
           QLDIIDLQS  ALCDFLRKEYGGLDVLV NAAIAF +   P  F   AEL
Sbjct: 61  QLDIIDLQSIRALCDFLRKEYGGLDVLVNNAAIAFQLDN-PTPFHIQAEL 109


>ref|NP_999184.1| carbonyl reductase/NADP-retinol dehydrogenase [Sus scrofa]
          Length = 260

 Score = 44.7 bits (104), Expect = 2e-06
 Identities = 31/88 (35%), Positives = 44/88 (50%)
 Frame = +3

Query: 162 RVALVTGANKGIGFSILRDLCRQIAGDVVLTARDVARGQAAVKHLQAEGLSPRFHQLDII 341
           +VALVT +  GIG +I R L  Q    VV+++R        V  LQ EGLS       + 
Sbjct: 15  KVALVTASTDGIGLAIARRLA-QDGAHVVVSSRKQENVDRTVATLQGEGLSVTGTVCHVG 73

Query: 342 DLQSKLALCDFLRKEYGGLDVLVKNAAI 425
             + +  L       +GG+D+LV NAA+
Sbjct: 74  KAEDRERLVAMAVNLHGGVDILVSNAAV 101


  Database: RefSeqSP
    Posted date:  Aug 1, 2006  7:14 PM
  Number of letters in database: 434,620
  Number of sequences in database:  1040
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 592,821
Number of Sequences: 1040
Number of extensions: 16477
Number of successful extensions: 79
Number of sequences better than 1.0e-05: 2
Number of HSP's better than  0.0 without gapping: 71
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 78
length of database: 434,620
effective HSP length: 72
effective length of database: 359,740
effective search space used: 42809060
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

Search to RefSeqBP

BLASTX 2.2.10 [Oct-19-2004]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20060611S-056803
         (576 letters)

Database: RefSeqBP 
           33,508 sequences; 16,112,626 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_001030258.1| 20-beta-hydroxysteroid dehydrogenase-like [B...   154   6e-38
Alignment   gi|XP_869745.1| PREDICTED: similar to carbonyl reductase 3 isof...   148   2e-36
Alignment   gi|NP_001029685.1| carbonyl reductase 1 [Bos taurus]                 141   3e-34
Alignment   gi|XP_874747.1| PREDICTED: similar to Carbonyl reductase [NADPH...   130   7e-31
Alignment   gi|NP_899207.1| double substrate-specificity short chain dehydr...    49   3e-06
Alignment   gi|NP_777247.1| NADPH-dependent retinol dehydrogenase/reductase...    49   3e-06
Alignment   gi|XP_584629.2| PREDICTED: similar to Retinol dehydrogenase 13,...    48   4e-06
Alignment   gi|XP_584642.2| PREDICTED: similar to retinol dehydrogenase 11 ...    48   6e-06

>ref|NP_001030258.1| 20-beta-hydroxysteroid dehydrogenase-like [Bos taurus]
          Length = 286

 Score =  154 bits (388), Expect = 6e-38
 Identities = 83/110 (75%), Positives = 92/110 (83%)
 Frame = +3

Query: 147 MSSNTRVALVTGANKGIGFSILRDLCRQIAGDVVLTARDVARGQAAVKHLQAEGLSPRFH 326
           MSS+TRVALVTGANKG+GF+I+RDLCR+  GDVVLTARD ARG+AAV+ LQAEGLSPRFH
Sbjct: 1   MSSSTRVALVTGANKGLGFAIVRDLCRRFPGDVVLTARDEARGRAAVQQLQAEGLSPRFH 60

Query: 327 QLDIIDLQSKLALCDFLRKEYGGLDVLVKNAAIAFPIGTIPHRFPDLAEL 476
           QLDI DLQS  AL DFLRKEYGGLDVLV NAAIAF +   P   P  AE+
Sbjct: 61  QLDITDLQSIHALRDFLRKEYGGLDVLVNNAAIAFQLSD-PTPTPIKAEM 109


>ref|XP_869745.1| PREDICTED: similar to carbonyl reductase 3 isoform 2 [Bos taurus]
          Length = 277

 Score =  148 bits (374), Expect = 2e-36
 Identities = 78/95 (82%), Positives = 83/95 (87%)
 Frame = +3

Query: 147 MSSNTRVALVTGANKGIGFSILRDLCRQIAGDVVLTARDVARGQAAVKHLQAEGLSPRFH 326
           MSS TRVALVTGANKGIGF+I RDLCR+  GDVVLTARD ARG+AAV+ LQAEGLSPRFH
Sbjct: 1   MSSYTRVALVTGANKGIGFAIARDLCREFPGDVVLTARDKARGRAAVQQLQAEGLSPRFH 60

Query: 327 QLDIIDLQSKLALCDFLRKEYGGLDVLVKNAAIAF 431
           QLDI DLQS  AL DFLRKEYGGL+VLV NA IAF
Sbjct: 61  QLDIDDLQSIRALRDFLRKEYGGLNVLVNNAGIAF 95


>ref|NP_001029685.1| carbonyl reductase 1 [Bos taurus]
          Length = 277

 Score =  141 bits (356), Expect = 3e-34
 Identities = 75/95 (78%), Positives = 81/95 (85%)
 Frame = +3

Query: 147 MSSNTRVALVTGANKGIGFSILRDLCRQIAGDVVLTARDVARGQAAVKHLQAEGLSPRFH 326
           MSS+  VALVTGANKGIGF I+RDLCR+ +GDVVLTARD ARG+AAV+ LQAEGLSP FH
Sbjct: 1   MSSSNCVALVTGANKGIGFVIVRDLCRRFSGDVVLTARDEARGRAAVQQLQAEGLSPLFH 60

Query: 327 QLDIIDLQSKLALCDFLRKEYGGLDVLVKNAAIAF 431
           QLDI D QS  AL DFLRKEYGGLDVLV NA IAF
Sbjct: 61  QLDIDDRQSIRALRDFLRKEYGGLDVLVNNAGIAF 95


>ref|XP_874747.1| PREDICTED: similar to Carbonyl reductase [NADPH] 1 (NADPH-dependent
           carbonyl reductase 1) (Prostaglandin-E(2) 9-reductase)
           (Prostaglandin 9-ketoreductase) (15-hydroxyprostaglandin
           dehydrogenase [NADP+]) [Bos taurus]
          Length = 277

 Score =  130 bits (327), Expect = 7e-31
 Identities = 70/95 (73%), Positives = 78/95 (82%)
 Frame = +3

Query: 147 MSSNTRVALVTGANKGIGFSILRDLCRQIAGDVVLTARDVARGQAAVKHLQAEGLSPRFH 326
           MSS+TRVALVTGANKG+GF+I+R L     GDVVLTA D A+G+AAV+ LQA+GLSP FH
Sbjct: 1   MSSSTRVALVTGANKGLGFAIVRALAGGFQGDVVLTAPDEAQGRAAVQQLQAQGLSPLFH 60

Query: 327 QLDIIDLQSKLALCDFLRKEYGGLDVLVKNAAIAF 431
           QLDI D QS  AL DFLRKEYGGLDVLV NA IAF
Sbjct: 61  QLDIDDRQSIRALRDFLRKEYGGLDVLVNNAGIAF 95


>ref|NP_899207.1| double substrate-specificity short chain dehydrogenase/reductase 2
           [Bos taurus]
          Length = 316

 Score = 48.9 bits (115), Expect = 3e-06
 Identities = 29/90 (32%), Positives = 49/90 (54%), Gaps = 2/90 (2%)
 Frame = +3

Query: 162 RVALVTGANKGIGFSILRDLCRQIAGDVVLTARDVARGQAAVKHLQAEGLSPR--FHQLD 335
           +V ++TGAN GIG    R+L R+    V +  RDV +G++A   +QA+  + +    +LD
Sbjct: 40  KVVVITGANTGIGKETARELARR-GARVYIACRDVLKGESAASEIQADTKNSQVLVRKLD 98

Query: 336 IIDLQSKLALCDFLRKEYGGLDVLVKNAAI 425
           + D +S  A  +    E   L +L+ NA +
Sbjct: 99  LSDTKSIRAFAEGFLAEEKQLHILINNAGV 128


>ref|NP_777247.1| NADPH-dependent retinol dehydrogenase/reductase [Bos taurus]
          Length = 260

 Score = 48.9 bits (115), Expect = 3e-06
 Identities = 33/97 (34%), Positives = 52/97 (53%)
 Frame = +3

Query: 156 NTRVALVTGANKGIGFSILRDLCRQIAGDVVLTARDVARGQAAVKHLQAEGLSPRFHQLD 335
           + +VALVT +  GIGF+I R L  Q    VV+++R       AV  L+ EGLS       
Sbjct: 13  DNKVALVTASTDGIGFAIARRLA-QDGAHVVVSSRKQQNVDRAVATLKGEGLSVTGTVCH 71

Query: 336 IIDLQSKLALCDFLRKEYGGLDVLVKNAAIAFPIGTI 446
           +   + +  L     K +GG+D+L+ NAA++   G++
Sbjct: 72  VGKAEDRERLVATAVKLHGGVDILISNAAVSPFFGSL 108


>ref|XP_584629.2| PREDICTED: similar to Retinol dehydrogenase 13, partial [Bos
           taurus]
          Length = 148

 Score = 48.1 bits (113), Expect = 4e-06
 Identities = 28/90 (31%), Positives = 51/90 (56%), Gaps = 2/90 (2%)
 Frame = +3

Query: 162 RVALVTGANKGIGFSILRDLCRQIAGDVVLTARDVARGQAAVKHLQAEGLSPRFH--QLD 335
           +  +VTGAN GIG     +L ++  G+++L  RD+ + +AA K ++ E L+ R +   LD
Sbjct: 39  KTVIVTGANTGIGKQTALELAKR-GGNIILACRDMEKCEAAAKEIRGETLNHRVNARHLD 97

Query: 336 IIDLQSKLALCDFLRKEYGGLDVLVKNAAI 425
           +  L+S       + +E   + +L+ NAA+
Sbjct: 98  LASLKSIREFAAKVTEEEEHVHILINNAAV 127


>ref|XP_584642.2| PREDICTED: similar to retinol dehydrogenase 11 (predicted) [Bos
           taurus]
          Length = 330

 Score = 47.8 bits (112), Expect = 6e-06
 Identities = 36/100 (36%), Positives = 53/100 (53%), Gaps = 4/100 (4%)
 Frame = +3

Query: 162 RVALVTGANKGIGFSILRDLCRQIAGDVVLTARDVARGQAAVKHLQAEGLSPRFHQLDII 341
           + A+VTGAN GIG ++ ++L  +    V+L  R   RGQ A+  +QA   S R   L  +
Sbjct: 50  KTAVVTGANSGIGKAVSQELAHR-GARVILACRSRERGQQALAEIQATSKSNRL-LLGEV 107

Query: 342 DLQSKLALCDF---LRKEYGGLDVLVKNAAI-AFPIGTIP 449
           DL S  ++  F   L +E   + +LV NAA+  FP    P
Sbjct: 108 DLSSMASIRSFAQRLLQECPEIHLLVNNAAVCGFPTTLTP 147


  Database: RefSeqBP
    Posted date:  Aug 1, 2006  7:14 PM
  Number of letters in database: 16,112,626
  Number of sequences in database:  33,508
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 22,116,233
Number of Sequences: 33508
Number of extensions: 638818
Number of successful extensions: 3632
Number of sequences better than 1.0e-05: 8
Number of HSP's better than  0.0 without gapping: 3082
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3611
length of database: 16,112,626
effective HSP length: 96
effective length of database: 12,895,858
effective search space used: 1225106510
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

Search to RefSeqCP

BLASTX 2.2.10 [Oct-19-2004]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20060611S-056803
         (576 letters)

Database: RefSeqCP 
           33,732 sequences; 19,266,565 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|XP_544873.2| PREDICTED: similar to carbonyl reductase 3 [Can...   150   1e-36
Alignment   gi|XP_852675.1| PREDICTED: similar to Carbonyl reductase [NADPH...   145   2e-35
Alignment   gi|XP_535589.2| PREDICTED: similar to Carbonyl reductase [NADPH...   134   4e-32
Alignment   gi|XP_537903.1| PREDICTED: similar to Carbonyl reductase [NADPH...   132   2e-31
Alignment   gi|XP_547738.2| PREDICTED: similar to dehydrogenase/reductase (...    55   4e-08
Alignment   gi|XP_533000.2| PREDICTED: similar to Retinol dehydrogenase 12 ...    53   2e-07
Alignment   gi|XP_537378.1| PREDICTED: similar to peroxisomal short-chain a...    49   4e-06
Alignment   gi|XP_859476.1| PREDICTED: similar to peroxisomal short-chain a...    49   4e-06
Alignment   gi|XP_854127.1| PREDICTED: similar to Retinol dehydrogenase 13 ...    49   4e-06
Alignment   gi|XP_547866.2| PREDICTED: similar to retinol dehydrogenase 12 ...    47   9e-06

>ref|XP_544873.2| PREDICTED: similar to carbonyl reductase 3 [Canis familiaris]
          Length = 484

 Score =  150 bits (378), Expect = 1e-36
 Identities = 80/106 (75%), Positives = 88/106 (83%)
 Frame = +3

Query: 114 SPRQSTYTTPAMSSNTRVALVTGANKGIGFSILRDLCRQIAGDVVLTARDVARGQAAVKH 293
           SPR      PAMSS +RVALVTGAN+GIGF+I R+LCRQ +GDVVLTARD ARG+AAV+ 
Sbjct: 197 SPRAPGPPLPAMSSCSRVALVTGANRGIGFAIARELCRQFSGDVVLTARDEARGRAAVQQ 256

Query: 294 LQAEGLSPRFHQLDIIDLQSKLALCDFLRKEYGGLDVLVKNAAIAF 431
           LQAEGLSPRFH LDI DLQS  AL DFLRKEYGGL+VLV NA IAF
Sbjct: 257 LQAEGLSPRFHLLDIDDLQSIRALRDFLRKEYGGLNVLVNNAGIAF 302


>ref|XP_852675.1| PREDICTED: similar to Carbonyl reductase [NADPH] 1 (NADPH-dependent
           carbonyl reductase 1) (Prostaglandin-E(2) 9-reductase)
           (Prostaglandin 9-ketoreductase) (15-hydroxyprostaglandin
           dehydrogenase [NADP+]) [Canis familiaris]
          Length = 277

 Score =  145 bits (366), Expect = 2e-35
 Identities = 76/95 (80%), Positives = 83/95 (87%)
 Frame = +3

Query: 147 MSSNTRVALVTGANKGIGFSILRDLCRQIAGDVVLTARDVARGQAAVKHLQAEGLSPRFH 326
           MS+ +RVALVTGANKGIGF+I R+LCRQ +GDVVLTARD ARG+AAV+ LQAEGLSPRFH
Sbjct: 1   MSAASRVALVTGANKGIGFAIARELCRQFSGDVVLTARDEARGRAAVQQLQAEGLSPRFH 60

Query: 327 QLDIIDLQSKLALCDFLRKEYGGLDVLVKNAAIAF 431
            LDI DLQS  AL DFLRKEYGGLDVLV NA IAF
Sbjct: 61  LLDIDDLQSIRALRDFLRKEYGGLDVLVNNAGIAF 95


>ref|XP_535589.2| PREDICTED: similar to Carbonyl reductase [NADPH] 1 (NADPH-dependent
           carbonyl reductase 1) (Prostaglandin-E(2) 9-reductase)
           (Prostaglandin 9-ketoreductase) (15-hydroxyprostaglandin
           dehydrogenase [NADP+]) [Canis familiaris]
          Length = 292

 Score =  134 bits (338), Expect = 4e-32
 Identities = 74/110 (67%), Positives = 84/110 (76%)
 Frame = +3

Query: 147 MSSNTRVALVTGANKGIGFSILRDLCRQIAGDVVLTARDVARGQAAVKHLQAEGLSPRFH 326
           MSS  RVA+VTGANKG+GF+I+RDLCR  +GDVVLTARD ARG+AAV+ LQ++GLSPRFH
Sbjct: 1   MSSAPRVAVVTGANKGLGFAIMRDLCRNFSGDVVLTARDEARGRAAVQQLQSKGLSPRFH 60

Query: 327 QLDIIDLQSKLALCDFLRKEYGGLDVLVKNAAIAFPIGTIPHRFPDLAEL 476
            LDI DLQS   L DFL KEY GLDVLV NA I F  G  P   P  AE+
Sbjct: 61  LLDIDDLQSICTLRDFLCKEYRGLDVLVNNAGINFDTGD-PTPLPIQAEV 109


>ref|XP_537903.1| PREDICTED: similar to Carbonyl reductase [NADPH] 1 (NADPH-dependent
           carbonyl reductase 1) (Prostaglandin-E(2) 9-reductase)
           (Prostaglandin 9-ketoreductase) (15-hydroxyprostaglandin
           dehydrogenase [NADP+]) [Canis familiaris]
          Length = 296

 Score =  132 bits (332), Expect = 2e-31
 Identities = 68/95 (71%), Positives = 78/95 (82%)
 Frame = +3

Query: 147 MSSNTRVALVTGANKGIGFSILRDLCRQIAGDVVLTARDVARGQAAVKHLQAEGLSPRFH 326
           MS   RVA+VTGANKG+GF+I RDLCR   GDV+LT+RD ARG+AAV+HL+AEGLSPRFH
Sbjct: 1   MSLALRVAVVTGANKGLGFAITRDLCRNFPGDVILTSRDEARGRAAVQHLKAEGLSPRFH 60

Query: 327 QLDIIDLQSKLALCDFLRKEYGGLDVLVKNAAIAF 431
            LDI +LQS  AL DFL +EYGGLDVLV NA I F
Sbjct: 61  LLDIDNLQSIRALRDFLWEEYGGLDVLVNNAGIVF 95


>ref|XP_547738.2| PREDICTED: similar to dehydrogenase/reductase (SDR family) member 2
           isoform 2 [Canis familiaris]
          Length = 370

 Score = 55.1 bits (131), Expect = 4e-08
 Identities = 37/88 (42%), Positives = 48/88 (54%)
 Frame = +3

Query: 162 RVALVTGANKGIGFSILRDLCRQIAGDVVLTARDVARGQAAVKHLQAEGLSPRFHQLDII 341
           RVA+VTGA  GIGF+I R L R     VV+++R       AV  LQ EGLS       + 
Sbjct: 126 RVAVVTGATDGIGFAIARRLARD-GAHVVVSSRKQHNVDRAVAALQGEGLSVTGTVCHVG 184

Query: 342 DLQSKLALCDFLRKEYGGLDVLVKNAAI 425
             + +  L   + + YGGLD LV NAA+
Sbjct: 185 KAEDRERLVATVLEHYGGLDFLVCNAAV 212


>ref|XP_533000.2| PREDICTED: similar to Retinol dehydrogenase 12 [Canis familiaris]
          Length = 596

 Score = 52.8 bits (125), Expect = 2e-07
 Identities = 34/94 (36%), Positives = 56/94 (59%), Gaps = 3/94 (3%)
 Frame = +3

Query: 162 RVALVTGANKGIGFSILRDLCRQIAGDVVLTARDVARGQAAVKHLQ--AEGLSPRFHQLD 335
           + A+VTGAN GIG ++ ++L R+    V+L  R+  RGQ A+  +Q  ++G      Q+D
Sbjct: 316 KTAVVTGANSGIGKAVCQELARR-GARVILACRNWERGQKALAEIQVASKGTCLLLGQVD 374

Query: 336 IIDLQSKLALCDFLRKEYGGLDVLVKNAAIA-FP 434
           +  + S  +   +L +EY  + +LV NAAI+ FP
Sbjct: 375 LSSMASIRSFARWLLQEYPEIHLLVNNAAISGFP 408


>ref|XP_537378.1| PREDICTED: similar to peroxisomal short-chain alcohol dehydrogenase
           isoform 1 [Canis familiaris]
          Length = 279

 Score = 48.5 bits (114), Expect = 4e-06
 Identities = 32/88 (36%), Positives = 46/88 (52%)
 Frame = +3

Query: 162 RVALVTGANKGIGFSILRDLCRQIAGDVVLTARDVARGQAAVKHLQAEGLSPRFHQLDII 341
           +VALVT +  GIGF+I R L R     VV+++R       AV  LQ EGLS       + 
Sbjct: 34  KVALVTASTDGIGFAIARRLARD-GAHVVVSSRKQHNVDRAVAALQGEGLSVTGTVCHVG 92

Query: 342 DLQSKLALCDFLRKEYGGLDVLVKNAAI 425
             + +  L       +GG+D+L+ NAA+
Sbjct: 93  KAEDRERLVATAVNLHGGIDILISNAAV 120


>ref|XP_859476.1| PREDICTED: similar to peroxisomal short-chain alcohol dehydrogenase
           isoform 2 [Canis familiaris]
          Length = 164

 Score = 48.5 bits (114), Expect = 4e-06
 Identities = 32/88 (36%), Positives = 46/88 (52%)
 Frame = +3

Query: 162 RVALVTGANKGIGFSILRDLCRQIAGDVVLTARDVARGQAAVKHLQAEGLSPRFHQLDII 341
           +VALVT +  GIGF+I R L R     VV+++R       AV  LQ EGLS       + 
Sbjct: 34  KVALVTASTDGIGFAIARRLARD-GAHVVVSSRKQHNVDRAVAALQGEGLSVTGTVCHVG 92

Query: 342 DLQSKLALCDFLRKEYGGLDVLVKNAAI 425
             + +  L       +GG+D+L+ NAA+
Sbjct: 93  KAEDRERLVATAVNLHGGIDILISNAAV 120


>ref|XP_854127.1| PREDICTED: similar to Retinol dehydrogenase 13 [Canis familiaris]
          Length = 334

 Score = 48.5 bits (114), Expect = 4e-06
 Identities = 30/90 (33%), Positives = 50/90 (55%), Gaps = 2/90 (2%)
 Frame = +3

Query: 162 RVALVTGANKGIGFSILRDLCRQIAGDVVLTARDVARGQAAVKHLQAEGLSPRFH--QLD 335
           +  +VTGAN GIG     +L R+  G+++L  RD+ + +AA K ++ E L+ R     LD
Sbjct: 39  KTVIVTGANTGIGKQTALELARR-GGNIILACRDMEKCEAAAKEIRGETLNHRVSAWHLD 97

Query: 336 IIDLQSKLALCDFLRKEYGGLDVLVKNAAI 425
           +  L+S       + +E   + +LV NAA+
Sbjct: 98  LASLKSIREFAAKIIEEEEQVHILVNNAAV 127


>ref|XP_547866.2| PREDICTED: similar to retinol dehydrogenase 12 (all-trans and
           9-cis) [Canis familiaris]
          Length = 303

 Score = 47.4 bits (111), Expect = 9e-06
 Identities = 28/90 (31%), Positives = 49/90 (54%), Gaps = 2/90 (2%)
 Frame = +3

Query: 162 RVALVTGANKGIGFSILRDLCRQIAGDVVLTARDVARGQAAVKHLQAEGLSPR--FHQLD 335
           +V ++TGAN GIG    R+L R+    V +  RDV +G++A   ++A+  + +    +LD
Sbjct: 27  KVVVITGANTGIGKETARELARR-GARVYIACRDVLKGESAASEIRADTKNSQVLVRKLD 85

Query: 336 IIDLQSKLALCDFLRKEYGGLDVLVKNAAI 425
           + D +S  A  +    E   L +L+ NA +
Sbjct: 86  LSDTKSIRAFAEGFLAEEKQLHILINNAGV 115


  Database: RefSeqCP
    Posted date:  Aug 1, 2006  9:25 PM
  Number of letters in database: 19,266,565
  Number of sequences in database:  33,732
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 25,860,855
Number of Sequences: 33732
Number of extensions: 742226
Number of successful extensions: 4040
Number of sequences better than 1.0e-05: 10
Number of HSP's better than  0.0 without gapping: 3402
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3996
length of database: 19,266,565
effective HSP length: 97
effective length of database: 15,994,561
effective search space used: 1503488734
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

Search to RefSeqHP

BLASTX 2.2.10 [Oct-19-2004]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20060611S-056803
         (576 letters)

Database: RefSeqHP 
           39,411 sequences; 17,774,539 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_001227.1| carbonyl reductase 3 [Homo sapiens]                  148   3e-36
Alignment   gi|NP_001748.1| carbonyl reductase 1 [Homo sapiens]                  146   1e-35
Alignment   gi|NP_932349.1| dehydrogenase/reductase (SDR family) member 4 l...    51   7e-07
Alignment   gi|XP_950350.1| PREDICTED: similar to dehydrogenase/reductase (...    51   7e-07
Alignment   gi|XP_950347.1| PREDICTED: similar to dehydrogenase/reductase (...    51   7e-07
Alignment   gi|XP_950345.1| PREDICTED: similar to dehydrogenase/reductase (...    51   7e-07
Alignment   gi|XP_946607.1| PREDICTED: similar to peroxisomal short-chain a...    51   7e-07
Alignment   gi|NP_066284.2| peroxisomal short-chain alcohol dehydrogenase [...    50   1e-06
Alignment   gi|XP_371503.3| PREDICTED: similar to short-chain dehydrogenase...    48   5e-06
Alignment   gi|XP_947127.1| PREDICTED: similar to short-chain dehydrogenase...    48   5e-06

>ref|NP_001227.1| carbonyl reductase 3 [Homo sapiens]
          Length = 277

 Score =  148 bits (374), Expect = 3e-36
 Identities = 77/95 (81%), Positives = 85/95 (89%)
 Frame = +3

Query: 147 MSSNTRVALVTGANKGIGFSILRDLCRQIAGDVVLTARDVARGQAAVKHLQAEGLSPRFH 326
           MSS +RVALVTGAN+GIG +I R+LCRQ +GDVVLTARDVARGQAAV+ LQAEGLSPRFH
Sbjct: 1   MSSCSRVALVTGANRGIGLAIARELCRQFSGDVVLTARDVARGQAAVQQLQAEGLSPRFH 60

Query: 327 QLDIIDLQSKLALCDFLRKEYGGLDVLVKNAAIAF 431
           QLDI DLQS  AL DFLRKEYGGL+VLV NAA+AF
Sbjct: 61  QLDIDDLQSIRALRDFLRKEYGGLNVLVNNAAVAF 95


>ref|NP_001748.1| carbonyl reductase 1 [Homo sapiens]
          Length = 277

 Score =  146 bits (368), Expect = 1e-35
 Identities = 76/97 (78%), Positives = 81/97 (83%)
 Frame = +3

Query: 147 MSSNTRVALVTGANKGIGFSILRDLCRQIAGDVVLTARDVARGQAAVKHLQAEGLSPRFH 326
           MSS   VALVTG NKGIG +I+RDLCR  +GDVVLTARDV RGQAAV+ LQAEGLSPRFH
Sbjct: 1   MSSGIHVALVTGGNKGIGLAIVRDLCRLFSGDVVLTARDVTRGQAAVQQLQAEGLSPRFH 60

Query: 327 QLDIIDLQSKLALCDFLRKEYGGLDVLVKNAAIAFPI 437
           QLDI DLQS  AL DFLRKEYGGLDVLV NA IAF +
Sbjct: 61  QLDIDDLQSIRALRDFLRKEYGGLDVLVNNAGIAFKV 97


>ref|NP_932349.1| dehydrogenase/reductase (SDR family) member 4 like 2 [Homo sapiens]
          Length = 230

 Score = 50.8 bits (120), Expect = 7e-07
 Identities = 34/88 (38%), Positives = 48/88 (54%)
 Frame = +3

Query: 162 RVALVTGANKGIGFSILRDLCRQIAGDVVLTARDVARGQAAVKHLQAEGLSPRFHQLDII 341
           +VALVT +  GIGF+I R L +  A  VV+++R       AV  LQ EGLS       + 
Sbjct: 31  KVALVTASTDGIGFAIARRLAQDRA-HVVVSSRKQQNVDQAVATLQGEGLSVTGTVCHVG 89

Query: 342 DLQSKLALCDFLRKEYGGLDVLVKNAAI 425
             + +  L     K +GG+D+LV NAA+
Sbjct: 90  KAEDRERLVAMAVKLHGGIDILVSNAAV 117


>ref|XP_950350.1| PREDICTED: similar to dehydrogenase/reductase (SDR family) member 4
           like 2 isoform 14 [Homo sapiens]
          Length = 190

 Score = 50.8 bits (120), Expect = 7e-07
 Identities = 34/88 (38%), Positives = 48/88 (54%)
 Frame = +3

Query: 162 RVALVTGANKGIGFSILRDLCRQIAGDVVLTARDVARGQAAVKHLQAEGLSPRFHQLDII 341
           +VALVT +  GIGF+I R L +  A  VV+++R       AV  LQ EGLS       + 
Sbjct: 31  KVALVTASTDGIGFAIARRLAQDRA-HVVVSSRKQQNVDQAVATLQGEGLSVTGTVCHVG 89

Query: 342 DLQSKLALCDFLRKEYGGLDVLVKNAAI 425
             + +  L     K +GG+D+LV NAA+
Sbjct: 90  KAEDRERLVAMAVKLHGGIDILVSNAAV 117


>ref|XP_950347.1| PREDICTED: similar to dehydrogenase/reductase (SDR family) member 4
           like 2 isoform 12 [Homo sapiens]
          Length = 186

 Score = 50.8 bits (120), Expect = 7e-07
 Identities = 34/88 (38%), Positives = 48/88 (54%)
 Frame = +3

Query: 162 RVALVTGANKGIGFSILRDLCRQIAGDVVLTARDVARGQAAVKHLQAEGLSPRFHQLDII 341
           +VALVT +  GIGF+I R L +  A  VV+++R       AV  LQ EGLS       + 
Sbjct: 31  KVALVTASTDGIGFAIARRLAQDRA-HVVVSSRKQQNVDQAVATLQGEGLSVTGTVCHVG 89

Query: 342 DLQSKLALCDFLRKEYGGLDVLVKNAAI 425
             + +  L     K +GG+D+LV NAA+
Sbjct: 90  KAEDRERLVAMAVKLHGGIDILVSNAAV 117


>ref|XP_950345.1| PREDICTED: similar to dehydrogenase/reductase (SDR family) member 4
           like 2 isoform 11 [Homo sapiens]
          Length = 161

 Score = 50.8 bits (120), Expect = 7e-07
 Identities = 34/88 (38%), Positives = 48/88 (54%)
 Frame = +3

Query: 162 RVALVTGANKGIGFSILRDLCRQIAGDVVLTARDVARGQAAVKHLQAEGLSPRFHQLDII 341
           +VALVT +  GIGF+I R L +  A  VV+++R       AV  LQ EGLS       + 
Sbjct: 31  KVALVTASTDGIGFAIARRLAQDRA-HVVVSSRKQQNVDQAVATLQGEGLSVTGTVCHVG 89

Query: 342 DLQSKLALCDFLRKEYGGLDVLVKNAAI 425
             + +  L     K +GG+D+LV NAA+
Sbjct: 90  KAEDRERLVAMAVKLHGGIDILVSNAAV 117


>ref|XP_946607.1| PREDICTED: similar to peroxisomal short-chain alcohol dehydrogenase
           isoform 1 [Homo sapiens]
          Length = 276

 Score = 50.8 bits (120), Expect = 7e-07
 Identities = 34/88 (38%), Positives = 48/88 (54%)
 Frame = +3

Query: 162 RVALVTGANKGIGFSILRDLCRQIAGDVVLTARDVARGQAAVKHLQAEGLSPRFHQLDII 341
           +VALVT +  GIGF+I R L +  A  VV+++R       AV  LQ EGLS       + 
Sbjct: 31  KVALVTASTDGIGFAIARRLAQDRA-HVVVSSRKQQNVDQAVATLQGEGLSVTGTVCHVG 89

Query: 342 DLQSKLALCDFLRKEYGGLDVLVKNAAI 425
             + +  L     K +GG+D+LV NAA+
Sbjct: 90  KAEDRERLVAMAVKLHGGIDILVSNAAV 117


>ref|NP_066284.2| peroxisomal short-chain alcohol dehydrogenase [Homo sapiens]
          Length = 278

 Score = 50.4 bits (119), Expect = 1e-06
 Identities = 36/95 (37%), Positives = 50/95 (52%)
 Frame = +3

Query: 162 RVALVTGANKGIGFSILRDLCRQIAGDVVLTARDVARGQAAVKHLQAEGLSPRFHQLDII 341
           +VALVT +  GIGF+I R L  Q    VV+++R       AV  LQ EGLS       + 
Sbjct: 33  KVALVTASTDGIGFAIARRLA-QDGAHVVVSSRKQQNVDQAVATLQGEGLSVTGTVCHVG 91

Query: 342 DLQSKLALCDFLRKEYGGLDVLVKNAAIAFPIGTI 446
             + +  L     K +GG+D+LV NAA+    G+I
Sbjct: 92  KAEDRERLVATAVKLHGGIDILVSNAAVNPFFGSI 126


>ref|XP_371503.3| PREDICTED: similar to short-chain dehydrogenase/reductase 1 [Homo
           sapiens]
          Length = 891

 Score = 48.1 bits (113), Expect = 5e-06
 Identities = 36/99 (36%), Positives = 53/99 (53%), Gaps = 3/99 (3%)
 Frame = +3

Query: 162 RVALVTGANKGIGFSILRDLCRQIAGDVVLTARDVARGQAAVKHLQAEGLSPRFHQLDII 341
           ++A+VTGAN GIG  + +DL R     V+LT +    GQ A+  +QA   S R   L  +
Sbjct: 603 KIAIVTGANSGIGKVVSQDLAR-CGAQVILTCQSRECGQQALAEIQAASNSNRL-LLGEV 660

Query: 342 DLQSKLALCDFLRK---EYGGLDVLVKNAAIAFPIGTIP 449
           DL S  ++  F R+   E   + +LV NA ++   G IP
Sbjct: 661 DLSSMTSIRSFARRLLQENPEIHLLVNNAGVS---GMIP 696


>ref|XP_947127.1| PREDICTED: similar to short-chain dehydrogenase/reductase 1 [Homo
           sapiens]
          Length = 916

 Score = 48.1 bits (113), Expect = 5e-06
 Identities = 36/99 (36%), Positives = 53/99 (53%), Gaps = 3/99 (3%)
 Frame = +3

Query: 162 RVALVTGANKGIGFSILRDLCRQIAGDVVLTARDVARGQAAVKHLQAEGLSPRFHQLDII 341
           ++A+VTGAN GIG  + +DL R     V+LT +    GQ A+  +QA   S R   L  +
Sbjct: 628 KIAIVTGANSGIGKVVSQDLAR-CGAQVILTCQSRECGQQALAEIQAASNSNRL-LLGEV 685

Query: 342 DLQSKLALCDFLRK---EYGGLDVLVKNAAIAFPIGTIP 449
           DL S  ++  F R+   E   + +LV NA ++   G IP
Sbjct: 686 DLSSMTSIRSFARRLLQENPEIHLLVNNAGVS---GMIP 721


  Database: RefSeqHP
    Posted date:  Aug 2, 2006 12:57 AM
  Number of letters in database: 17,774,539
  Number of sequences in database:  39,411
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 25,164,888
Number of Sequences: 39411
Number of extensions: 756725
Number of successful extensions: 4803
Number of sequences better than 1.0e-05: 10
Number of HSP's better than  0.0 without gapping: 3851
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4769
length of database: 17,774,539
effective HSP length: 96
effective length of database: 13,991,083
effective search space used: 1329152885
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

Search to RefSeqMP

BLASTX 2.2.10 [Oct-19-2004]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20060611S-056803
         (576 letters)

Database: RefSeqMP 
           45,328 sequences; 21,768,885 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_766635.1| carbonyl reductase 3 [Mus musculus]                  144   6e-35
Alignment   gi|XP_359206.3| PREDICTED: similar to Carbonyl reductase [NADPH...   134   6e-32
Alignment   gi|NP_031646.1| carbonyl reductase 1 [Mus musculus]                  134   8e-32
Alignment   gi|XP_487442.1| PREDICTED: similar to Carbonyl reductase [NADPH...   133   1e-31
Alignment   gi|XP_989090.1| PREDICTED: similar to Carbonyl reductase [NADPH...   133   1e-31
Alignment   gi|NP_780581.1| retinol dehydrogenase 13 (all-trans and 9-cis) ...    54   8e-08
Alignment   gi|NP_067532.2| short-chain dehydrogenase/reductase 1 [Mus musc...    49   3e-06
Alignment   gi|NP_076186.1| alcohol dehydrogenase PAN2 [Mus musculus]             48   6e-06
Alignment   gi|NP_109611.1| NADPH-dependent retinol dehydrogenase/reductase...    48   6e-06
Alignment   gi|NP_001033027.1| NADPH-dependent retinol dehydrogenase/reduct...    48   6e-06

>ref|NP_766635.1| carbonyl reductase 3 [Mus musculus]
          Length = 277

 Score =  144 bits (363), Expect = 6e-35
 Identities = 76/95 (80%), Positives = 83/95 (87%)
 Frame = +3

Query: 147 MSSNTRVALVTGANKGIGFSILRDLCRQIAGDVVLTARDVARGQAAVKHLQAEGLSPRFH 326
           MSS +RVALVTGANKGIGF+I RDLCR+ +GDVVLTARD ARG+AAV+ LQAEGLSPRFH
Sbjct: 1   MSSCSRVALVTGANKGIGFAITRDLCRKFSGDVVLTARDEARGRAAVQQLQAEGLSPRFH 60

Query: 327 QLDIIDLQSKLALCDFLRKEYGGLDVLVKNAAIAF 431
           QLDI D QS  AL DFLRKEYGGL+VLV NA IAF
Sbjct: 61  QLDIDDPQSIRALRDFLRKEYGGLNVLVNNAGIAF 95


>ref|XP_359206.3| PREDICTED: similar to Carbonyl reductase [NADPH] 1 (NADPH-dependent
           carbonyl reductase 1) [Mus musculus]
          Length = 277

 Score =  134 bits (337), Expect = 6e-32
 Identities = 72/102 (70%), Positives = 81/102 (79%)
 Frame = +3

Query: 147 MSSNTRVALVTGANKGIGFSILRDLCRQIAGDVVLTARDVARGQAAVKHLQAEGLSPRFH 326
           M S +R+ALVTGANKGIGF+I RDLC+Q +GDVVLTARD ARG AAV+ LQAEGL PRFH
Sbjct: 1   MPSCSRIALVTGANKGIGFAITRDLCQQFSGDVVLTARDEARGLAAVQKLQAEGLIPRFH 60

Query: 327 QLDIIDLQSKLALCDFLRKEYGGLDVLVKNAAIAFPIGTIPH 452
           QLDI D QS  AL +FL KEYGGLDVLV NA IA+    + H
Sbjct: 61  QLDINDPQSIHALRNFLLKEYGGLDVLVNNAGIAYKGTDLTH 102


>ref|NP_031646.1| carbonyl reductase 1 [Mus musculus]
          Length = 277

 Score =  134 bits (336), Expect = 8e-32
 Identities = 71/97 (73%), Positives = 78/97 (80%)
 Frame = +3

Query: 147 MSSNTRVALVTGANKGIGFSILRDLCRQIAGDVVLTARDVARGQAAVKHLQAEGLSPRFH 326
           MSS+  VALVTGANKGIGF+I RDLCR+ +GDVVL ARD  RGQ AV+ LQAEGLSPRFH
Sbjct: 1   MSSSRPVALVTGANKGIGFAITRDLCRKFSGDVVLAARDEERGQTAVQKLQAEGLSPRFH 60

Query: 327 QLDIIDLQSKLALCDFLRKEYGGLDVLVKNAAIAFPI 437
           QLDI + QS  AL DFL KEYGGLDVLV  A IAF +
Sbjct: 61  QLDIDNPQSIRALRDFLLKEYGGLDVLVNKAGIAFKV 97


>ref|XP_487442.1| PREDICTED: similar to Carbonyl reductase [NADPH] 1 (NADPH-dependent
           carbonyl reductase 1) [Mus musculus]
          Length = 277

 Score =  133 bits (335), Expect = 1e-31
 Identities = 71/97 (73%), Positives = 79/97 (81%)
 Frame = +3

Query: 147 MSSNTRVALVTGANKGIGFSILRDLCRQIAGDVVLTARDVARGQAAVKHLQAEGLSPRFH 326
           MS  +RVALVTG NKGIGF I+RDLC++ +GDVVLTARD ARG AAV+ LQAEGL+PRFH
Sbjct: 1   MSPCSRVALVTGGNKGIGFEIIRDLCQKFSGDVVLTARDEARGCAAVQKLQAEGLNPRFH 60

Query: 327 QLDIIDLQSKLALCDFLRKEYGGLDVLVKNAAIAFPI 437
           QLDI D QS  AL DFL KEY GLDVLV NA IAF +
Sbjct: 61  QLDIDDPQSIHALRDFLLKEYKGLDVLVNNAGIAFKV 97


>ref|XP_989090.1| PREDICTED: similar to Carbonyl reductase [NADPH] 1 (NADPH-dependent
           carbonyl reductase 1) [Mus musculus]
          Length = 277

 Score =  133 bits (335), Expect = 1e-31
 Identities = 71/97 (73%), Positives = 79/97 (81%)
 Frame = +3

Query: 147 MSSNTRVALVTGANKGIGFSILRDLCRQIAGDVVLTARDVARGQAAVKHLQAEGLSPRFH 326
           MS  +RVALVTG NKGIGF I+RDLC++ +GDVVLTARD ARG AAV+ LQAEGL+PRFH
Sbjct: 1   MSPCSRVALVTGGNKGIGFEIIRDLCQKFSGDVVLTARDEARGCAAVQKLQAEGLNPRFH 60

Query: 327 QLDIIDLQSKLALCDFLRKEYGGLDVLVKNAAIAFPI 437
           QLDI D QS  AL DFL KEY GLDVLV NA IAF +
Sbjct: 61  QLDIDDPQSIHALRDFLLKEYKGLDVLVNNAGIAFKV 97


>ref|NP_780581.1| retinol dehydrogenase 13 (all-trans and 9-cis) [Mus musculus]
          Length = 334

 Score = 54.3 bits (129), Expect = 8e-08
 Identities = 33/91 (36%), Positives = 55/91 (60%), Gaps = 3/91 (3%)
 Frame = +3

Query: 162 RVALVTGANKGIGFSILRDLCRQIAGDVVLTARDVARGQAAVKHLQAEGLSPRFHQLDII 341
           +  +VTGAN GIG     +L ++  G+V+L  RD+ + + A K ++ E L+PR  + + +
Sbjct: 39  KTVIVTGANTGIGKQTALELAKR-GGNVILACRDMEKCEVAAKDIRGETLNPRV-RAERL 96

Query: 342 DLQSKLALCDFLR---KEYGGLDVLVKNAAI 425
           DL S  ++ +F R   KE   +D+LV NAA+
Sbjct: 97  DLASLKSIREFARKVIKEEERVDILVNNAAV 127


>ref|NP_067532.2| short-chain dehydrogenase/reductase 1 [Mus musculus]
          Length = 316

 Score = 48.9 bits (115), Expect = 3e-06
 Identities = 38/91 (41%), Positives = 52/91 (57%), Gaps = 3/91 (3%)
 Frame = +3

Query: 162 RVALVTGANKGIGFSILRDLCRQIAGDVVLTARDVARGQAAVKHLQA-EGLSPRF-HQLD 335
           +VA+VTGAN GIG    +DL  Q    V L  RDV +G+ A + +QA  G S  F  +LD
Sbjct: 39  KVAIVTGANTGIGKETAKDLA-QRGARVYLACRDVDKGELAAREIQAVTGNSQVFVRKLD 97

Query: 336 IIDLQSKLALC-DFLRKEYGGLDVLVKNAAI 425
           + D +S  A   DFL +E   L +L+ NA +
Sbjct: 98  LADTKSIRAFAKDFLAEE-KHLHLLINNAGV 127


>ref|NP_076186.1| alcohol dehydrogenase PAN2 [Mus musculus]
          Length = 334

 Score = 48.1 bits (113), Expect = 6e-06
 Identities = 34/100 (34%), Positives = 49/100 (49%), Gaps = 12/100 (12%)
 Frame = +3

Query: 162 RVALVTGANKGIGFSILRDLCRQIAGDVVLTARDVARGQAAVKHL-----QAEGLSPR-- 320
           +  L+TGAN G+G +   +L R +   V++  RD AR + A   L     QA G  P   
Sbjct: 45  KTVLITGANSGLGRATAAELLR-LGARVIMGCRDRARAEEAAGQLRQELCQAGGAGPDGT 103

Query: 321 -----FHQLDIIDLQSKLALCDFLRKEYGGLDVLVKNAAI 425
                  +LD+  L+S  A C  L +E   LDVL+ NA +
Sbjct: 104 DGQLVVKELDLASLRSVRAFCQELLQEEPRLDVLINNAGV 143


>ref|NP_109611.1| NADPH-dependent retinol dehydrogenase/reductase isoform 2 [Mus
           musculus]
          Length = 216

 Score = 48.1 bits (113), Expect = 6e-06
 Identities = 32/90 (35%), Positives = 46/90 (51%)
 Frame = +3

Query: 156 NTRVALVTGANKGIGFSILRDLCRQIAGDVVLTARDVARGQAAVKHLQAEGLSPRFHQLD 335
           + +VALVT +  GIGF+I R L       VV+++R       AV  LQ EGLS       
Sbjct: 32  SNKVALVTASTDGIGFAIARRLAED-GAHVVVSSRKQQNVDRAVATLQGEGLSVTGIVCH 90

Query: 336 IIDLQSKLALCDFLRKEYGGLDVLVKNAAI 425
           +   + +  L     K + G+D+LV NAA+
Sbjct: 91  VGKAEDREKLITTALKRHQGIDILVSNAAV 120


>ref|NP_001033027.1| NADPH-dependent retinol dehydrogenase/reductase isoform 1 [Mus
           musculus]
          Length = 279

 Score = 48.1 bits (113), Expect = 6e-06
 Identities = 32/90 (35%), Positives = 46/90 (51%)
 Frame = +3

Query: 156 NTRVALVTGANKGIGFSILRDLCRQIAGDVVLTARDVARGQAAVKHLQAEGLSPRFHQLD 335
           + +VALVT +  GIGF+I R L       VV+++R       AV  LQ EGLS       
Sbjct: 32  SNKVALVTASTDGIGFAIARRLAED-GAHVVVSSRKQQNVDRAVATLQGEGLSVTGIVCH 90

Query: 336 IIDLQSKLALCDFLRKEYGGLDVLVKNAAI 425
           +   + +  L     K + G+D+LV NAA+
Sbjct: 91  VGKAEDREKLITTALKRHRGIDILVSNAAV 120


  Database: RefSeqMP
    Posted date:  Aug 2, 2006 12:58 AM
  Number of letters in database: 21,768,885
  Number of sequences in database:  45,328
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 29,880,135
Number of Sequences: 45328
Number of extensions: 858861
Number of successful extensions: 4613
Number of sequences better than 1.0e-05: 10
Number of HSP's better than  0.0 without gapping: 3896
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4579
length of database: 21,768,885
effective HSP length: 98
effective length of database: 17,326,741
effective search space used: 1611386913
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)