BLASTX 2.2.10 [Oct-19-2004]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20060611S-056808
(1325 letters)
Database: RefSeqSP
1040 sequences; 434,620 total letters
Searching...done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_999238.1| 20-beta-hydroxysteroid dehydrogenase [Sus scrofa] 154 9e-73
>ref|NP_999238.1| 20-beta-hydroxysteroid dehydrogenase [Sus scrofa]
Length = 289
Score = 154 bits (389), Expect(2) = 9e-73
Identities = 80/92 (86%), Positives = 84/92 (91%)
Frame = +3
Query: 114 MSSNTPVALVTGANKGIGFAIVRDLCQQFAGDVVLTARDVARGLAAEKQLQAEGLSPRFS 293
MSSNT VALVTGANKGIGFAIVRDLC+QFAGDVVLTARDVARG AA KQLQAEGLSPRF
Sbjct: 1 MSSNTRVALVTGANKGIGFAIVRDLCRQFAGDVVLTARDVARGQAAVKQLQAEGLSPRFH 60
Query: 294 HLDILYLQIIRALCDFMRKEYGGLDVLVYNAS 389
LDI+ LQ IRALCDF+RKEYGGLDVLV NA+
Sbjct: 61 QLDIIDLQSIRALCDFLRKEYGGLDVLVNNAA 92
Score = 134 bits (336), Expect(2) = 9e-73
Identities = 83/167 (49%), Positives = 102/167 (61%)
Frame = +1
Query: 388 AITFQLDNPTPFHIHAELTMITNFMGTLNECTKLLPLINPQGRVVNVSSTSCVIALNECS 567
AI FQLDNPTPFHI AELTM TNFMGT N CT+LLPLI PQGRVVNVSST V ALNECS
Sbjct: 92 AIAFQLDNPTPFHIQAELTMKTNFMGTRNVCTELLPLIKPQGRVVNVSSTEGVRALNECS 151
Query: 568 PELQRMFNIETLT*NELVGLIKKFCGTH*HGVAKVRLMY*FELRNEQNLGPQVCKEFCPE 747
PELQ+ F ET+T ELVGL+ KF +GV + + + +G V
Sbjct: 152 PELQQKFKSETITEEELVGLMNKFVEDTKNGVHR-KEGWSDSTYGVTKIGVSVLSRIYAR 210
Query: 748 SEITE*HRNIIPLIAFFPWRVTSNLGGNIASQSHNL*AKNPTFLSLL 888
+ + I L A P V +++GG A +S + A+ P +L+LL
Sbjct: 211 KLREQRAGDKILLNACCPGWVRTDMGGPKAPKSPEVGAETPVYLALL 257
Database: RefSeqSP
Posted date: Aug 1, 2006 7:14 PM
Number of letters in database: 434,620
Number of sequences in database: 1040
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,247,856
Number of Sequences: 1040
Number of extensions: 33312
Number of successful extensions: 111
Number of sequences better than 1.0e-05: 1
Number of HSP's better than 0.0 without gapping: 99
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 109
length of database: 434,620
effective HSP length: 80
effective length of database: 351,420
effective search space used: 126862620
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
Search to RefSeqBP
BLASTX 2.2.10 [Oct-19-2004]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20060611S-056808
(1325 letters)
Database: RefSeqBP
33,508 sequences; 16,112,626 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001030258.1| 20-beta-hydroxysteroid dehydrogenase-like [B... 136 1e-55
Alignment gi|XP_869745.1| PREDICTED: similar to carbonyl reductase 3 isof... 133 2e-55
Alignment gi|NP_001029685.1| carbonyl reductase 1 [Bos taurus] 129 5e-55
Alignment gi|XP_874747.1| PREDICTED: similar to Carbonyl reductase [NADPH... 117 4e-53
Alignment gi|XP_868956.1| PREDICTED: similar to Carbonyl reductase [NADPH... 96 6e-20
Alignment gi|XP_878838.1| PREDICTED: similar to carbonyl reductase 3 isof... 81 2e-15
Alignment gi|XP_594165.2| PREDICTED: similar to carbonyl reductase 3 isof... 81 2e-15
>ref|NP_001030258.1| 20-beta-hydroxysteroid dehydrogenase-like [Bos taurus]
Length = 286
Score = 136 bits (343), Expect(2) = 1e-55
Identities = 72/92 (78%), Positives = 79/92 (85%)
Frame = +3
Query: 114 MSSNTPVALVTGANKGIGFAIVRDLCQQFAGDVVLTARDVARGLAAEKQLQAEGLSPRFS 293
MSS+T VALVTGANKG+GFAIVRDLC++F GDVVLTARD ARG AA +QLQAEGLSPRF
Sbjct: 1 MSSSTRVALVTGANKGLGFAIVRDLCRRFPGDVVLTARDEARGRAAVQQLQAEGLSPRFH 60
Query: 294 HLDILYLQIIRALCDFMRKEYGGLDVLVYNAS 389
LDI LQ I AL DF+RKEYGGLDVLV NA+
Sbjct: 61 QLDITDLQSIHALRDFLRKEYGGLDVLVNNAA 92
Score = 99.8 bits (247), Expect(2) = 1e-55
Identities = 67/167 (40%), Positives = 90/167 (53%)
Frame = +1
Query: 388 AITFQLDNPTPFHIHAELTMITNFMGTLNECTKLLPLINPQGRVVNVSSTSCVIALNECS 567
AI FQL +PTP I AE+TM TNF GT + CT+LLPL+ PQGRVVN+SS AL CS
Sbjct: 92 AIAFQLSDPTPTPIKAEMTMKTNFFGTRDICTELLPLMKPQGRVVNMSSGWGFKALESCS 151
Query: 568 PELQRMFNIETLT*NELVGLIKKFCGTH*HGVAKVRLMY*FELRNEQNLGPQVCKEFCPE 747
PELQ+ ET+T ELVGL+ KF +GV + + +G
Sbjct: 152 PELQQKLRSETITEEELVGLMNKFVEDTKNGVHRKEGWPDNNIYGVAKIGITALSRIQAR 211
Query: 748 SEITE*HRNIIPLIAFFPWRVTSNLGGNIASQSHNL*AKNPTFLSLL 888
+ + I L A P V +++GG+ A +S + P +L+LL
Sbjct: 212 KLSEQRGGDKILLNACCPGWVRTDMGGSKAFKSLEEGIETPMYLALL 258
>ref|XP_869745.1| PREDICTED: similar to carbonyl reductase 3 isoform 2 [Bos taurus]
Length = 277
Score = 133 bits (335), Expect(2) = 2e-55
Identities = 72/91 (79%), Positives = 77/91 (84%)
Frame = +3
Query: 114 MSSNTPVALVTGANKGIGFAIVRDLCQQFAGDVVLTARDVARGLAAEKQLQAEGLSPRFS 293
MSS T VALVTGANKGIGFAI RDLC++F GDVVLTARD ARG AA +QLQAEGLSPRF
Sbjct: 1 MSSYTRVALVTGANKGIGFAIARDLCREFPGDVVLTARDKARGRAAVQQLQAEGLSPRFH 60
Query: 294 HLDILYLQIIRALCDFMRKEYGGLDVLVYNA 386
LDI LQ IRAL DF+RKEYGGL+VLV NA
Sbjct: 61 QLDIDDLQSIRALRDFLRKEYGGLNVLVNNA 91
Score = 101 bits (252), Expect(2) = 2e-55
Identities = 68/168 (40%), Positives = 91/168 (54%)
Frame = +1
Query: 391 ITFQLDNPTPFHIHAELTMITNFMGTLNECTKLLPLINPQGRVVNVSSTSCVIALNECSP 570
I F+ D+PTPF I AE+T+ TNF T N CT+LLP++ P GRVVNVSS+ AL CS
Sbjct: 93 IAFKTDDPTPFDIQAEMTLKTNFFATRNVCTELLPIVKPHGRVVNVSSSQGSQALENCSE 152
Query: 571 ELQRMFNIETLT*NELVGLIKKFCGTH*HGVAKVRLMY*FELRNEQNLGPQVCKEFCPES 750
+LQ F ETLT +LV L+KKF + V + R + LG V
Sbjct: 153 DLQEKFRCETLTEEDLVDLMKKFVEDTKNEVHE-REGWPNSAYGVSKLGVTVLSRILARR 211
Query: 751 EITE*HRNIIPLIAFFPWRVTSNLGGNIASQSHNL*AKNPTFLSLLSP 894
+ + I L A P V ++LGG AS++ A+ P +L+LL P
Sbjct: 212 LEEKRKADRILLNACCPGWVKTDLGGAHASRTVEEGAETPVYLALLPP 259
>ref|NP_001029685.1| carbonyl reductase 1 [Bos taurus]
Length = 277
Score = 129 bits (325), Expect(2) = 5e-55
Identities = 70/91 (76%), Positives = 76/91 (83%)
Frame = +3
Query: 114 MSSNTPVALVTGANKGIGFAIVRDLCQQFAGDVVLTARDVARGLAAEKQLQAEGLSPRFS 293
MSS+ VALVTGANKGIGF IVRDLC++F+GDVVLTARD ARG AA +QLQAEGLSP F
Sbjct: 1 MSSSNCVALVTGANKGIGFVIVRDLCRRFSGDVVLTARDEARGRAAVQQLQAEGLSPLFH 60
Query: 294 HLDILYLQIIRALCDFMRKEYGGLDVLVYNA 386
LDI Q IRAL DF+RKEYGGLDVLV NA
Sbjct: 61 QLDIDDRQSIRALRDFLRKEYGGLDVLVNNA 91
Score = 104 bits (259), Expect(2) = 5e-55
Identities = 70/166 (42%), Positives = 94/166 (56%)
Frame = +1
Query: 391 ITFQLDNPTPFHIHAELTMITNFMGTLNECTKLLPLINPQGRVVNVSSTSCVIALNECSP 570
I F+ + TPFHI AE+TM TNF GT + CT+LLPLI PQGRVVNVSS V +L +CS
Sbjct: 93 IAFKTADTTPFHIQAEVTMKTNFFGTRDVCTELLPLIKPQGRVVNVSSFVSVNSLKKCSR 152
Query: 571 ELQRMFNIETLT*NELVGLIKKFCGTH*HGVAKVRLMY*FELRNEQNLGPQVCKEFCPES 750
ELQ+ F ET+T ELVGL+ KF +GV + + + +G V
Sbjct: 153 ELQQKFRSETITEEELVGLMNKFVEDTKNGVHR-KEGWPDTAYGVTKIGVTVLSRIHARK 211
Query: 751 EITE*HRNIIPLIAFFPWRVTSNLGGNIASQSHNL*AKNPTFLSLL 888
+ + I L A P V +++GG AS+S A+ P +L+LL
Sbjct: 212 LSEQRGGDKILLNACCPGWVRTDMGGPKASKSPEEGAETPVYLALL 257
>ref|XP_874747.1| PREDICTED: similar to Carbonyl reductase [NADPH] 1 (NADPH-dependent
carbonyl reductase 1) (Prostaglandin-E(2) 9-reductase)
(Prostaglandin 9-ketoreductase) (15-hydroxyprostaglandin
dehydrogenase [NADP+]) [Bos taurus]
Length = 277
Score = 117 bits (294), Expect(2) = 4e-53
Identities = 66/91 (72%), Positives = 72/91 (79%)
Frame = +3
Query: 114 MSSNTPVALVTGANKGIGFAIVRDLCQQFAGDVVLTARDVARGLAAEKQLQAEGLSPRFS 293
MSS+T VALVTGANKG+GFAIVR L F GDVVLTA D A+G AA +QLQA+GLSP F
Sbjct: 1 MSSSTRVALVTGANKGLGFAIVRALAGGFQGDVVLTAPDEAQGRAAVQQLQAQGLSPLFH 60
Query: 294 HLDILYLQIIRALCDFMRKEYGGLDVLVYNA 386
LDI Q IRAL DF+RKEYGGLDVLV NA
Sbjct: 61 QLDIDDRQSIRALRDFLRKEYGGLDVLVNNA 91
Score = 110 bits (274), Expect(2) = 4e-53
Identities = 71/168 (42%), Positives = 96/168 (57%)
Frame = +1
Query: 391 ITFQLDNPTPFHIHAELTMITNFMGTLNECTKLLPLINPQGRVVNVSSTSCVIALNECSP 570
I F+ + TPFHI AE+TM TNF GT + CT+LLPLI PQGRVVNVSS+ V +L +CSP
Sbjct: 93 IAFKTADTTPFHIQAEVTMKTNFFGTRDVCTELLPLIKPQGRVVNVSSSVSVSSLKKCSP 152
Query: 571 ELQRMFNIETLT*NELVGLIKKFCGTH*HGVAKVRLMY*FELRNEQNLGPQVCKEFCPES 750
ELQ+ F ET+T ELVGL+ KF +GV + + + +G V
Sbjct: 153 ELQQKFQSETITEEELVGLMNKFVEDTKNGVHR-KEGWPDTAYGVTKIGVTVLSRIHARK 211
Query: 751 EITE*HRNIIPLIAFFPWRVTSNLGGNIASQSHNL*AKNPTFLSLLSP 894
+ + I L A P V +++GG A +S A+ P +L+LL P
Sbjct: 212 MSEQRGGDKILLNACCPGWVRTDMGGPKAPKSPEEGAETPVYLALLPP 259
>ref|XP_868956.1| PREDICTED: similar to Carbonyl reductase [NADPH] 1 (NADPH-dependent
carbonyl reductase 1) (Prostaglandin-E(2) 9-reductase)
(Prostaglandin 9-ketoreductase) (15-hydroxyprostaglandin
dehydrogenase [NADP+]) [Bos taurus]
Length = 327
Score = 95.9 bits (237), Expect = 6e-20
Identities = 50/83 (60%), Positives = 60/83 (72%)
Frame = +1
Query: 415 TPFHIHAELTMITNFMGTLNECTKLLPLINPQGRVVNVSSTSCVIALNECSPELQRMFNI 594
TPF I AE+TM TNF GT CT+LLPL+ PQGRVVNVSS+ V +L +CSPELQ+ F
Sbjct: 72 TPFPIQAEVTMKTNFFGTRVVCTELLPLLKPQGRVVNVSSSVSVTSLKKCSPELQQKFQS 131
Query: 595 ETLT*NELVGLIKKFCGTH*HGV 663
ET+T ELVGL+ KF +GV
Sbjct: 132 ETITEEELVGLMNKFVEDTKNGV 154
>ref|XP_878838.1| PREDICTED: similar to carbonyl reductase 3 isoform 3 [Bos taurus]
Length = 169
Score = 80.9 bits (198), Expect = 2e-15
Identities = 58/152 (38%), Positives = 79/152 (51%)
Frame = +1
Query: 439 LTMITNFMGTLNECTKLLPLINPQGRVVNVSSTSCVIALNECSPELQRMFNIETLT*NEL 618
+T+ TNF T N CT+LLP++ P GRVVNVSS+ AL CS +LQ F ETLT +L
Sbjct: 1 MTLKTNFFATRNVCTELLPIVKPHGRVVNVSSSQGSQALENCSEDLQEKFRCETLTEEDL 60
Query: 619 VGLIKKFCGTH*HGVAKVRLMY*FELRNEQNLGPQVCKEFCPESEITE*HRNIIPLIAFF 798
V L+KKF + V + R + LG V + + I L A
Sbjct: 61 VDLMKKFVEDTKNEVHE-REGWPNSAYGVSKLGVTVLSRILARRLEEKRKADRILLNACC 119
Query: 799 PWRVTSNLGGNIASQSHNL*AKNPTFLSLLSP 894
P V ++LGG AS++ A+ P +L+LL P
Sbjct: 120 PGWVKTDLGGAHASRTVEEGAETPVYLALLPP 151
>ref|XP_594165.2| PREDICTED: similar to carbonyl reductase 3 isoform 1 [Bos taurus]
Length = 169
Score = 80.9 bits (198), Expect = 2e-15
Identities = 58/152 (38%), Positives = 79/152 (51%)
Frame = +1
Query: 439 LTMITNFMGTLNECTKLLPLINPQGRVVNVSSTSCVIALNECSPELQRMFNIETLT*NEL 618
+T+ TNF T N CT+LLP++ P GRVVNVSS+ AL CS +LQ F ETLT +L
Sbjct: 1 MTLKTNFFATRNVCTELLPIVKPHGRVVNVSSSQGSQALENCSEDLQEKFRCETLTEEDL 60
Query: 619 VGLIKKFCGTH*HGVAKVRLMY*FELRNEQNLGPQVCKEFCPESEITE*HRNIIPLIAFF 798
V L+KKF + V + R + LG V + + I L A
Sbjct: 61 VDLMKKFVEDTKNEVHE-REGWPNSAYGVSKLGVTVLSRILARRLEEKRKADRILLNACC 119
Query: 799 PWRVTSNLGGNIASQSHNL*AKNPTFLSLLSP 894
P V ++LGG AS++ A+ P +L+LL P
Sbjct: 120 PGWVKTDLGGAHASRTVEEGAETPVYLALLPP 151
Database: RefSeqBP
Posted date: Aug 1, 2006 7:14 PM
Number of letters in database: 16,112,626
Number of sequences in database: 33,508
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 45,215,766
Number of Sequences: 33508
Number of extensions: 1231515
Number of successful extensions: 3992
Number of sequences better than 1.0e-05: 7
Number of HSP's better than 0.0 without gapping: 3478
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3984
length of database: 16,112,626
effective HSP length: 105
effective length of database: 12,594,286
effective search space used: 4231680096
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
Search to RefSeqCP
BLASTX 2.2.10 [Oct-19-2004]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20060611S-056808
(1325 letters)
Database: RefSeqCP
33,732 sequences; 19,266,565 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_852675.1| PREDICTED: similar to Carbonyl reductase [NADPH... 132 4e-56
Alignment gi|XP_544873.2| PREDICTED: similar to carbonyl reductase 3 [Can... 133 1e-52
Alignment gi|XP_537903.1| PREDICTED: similar to Carbonyl reductase [NADPH... 117 7e-51
Alignment gi|XP_535589.2| PREDICTED: similar to Carbonyl reductase [NADPH... 118 2e-47
>ref|XP_852675.1| PREDICTED: similar to Carbonyl reductase [NADPH] 1 (NADPH-dependent
carbonyl reductase 1) (Prostaglandin-E(2) 9-reductase)
(Prostaglandin 9-ketoreductase) (15-hydroxyprostaglandin
dehydrogenase [NADP+]) [Canis familiaris]
Length = 277
Score = 132 bits (331), Expect(2) = 4e-56
Identities = 71/91 (78%), Positives = 78/91 (85%)
Frame = +3
Query: 114 MSSNTPVALVTGANKGIGFAIVRDLCQQFAGDVVLTARDVARGLAAEKQLQAEGLSPRFS 293
MS+ + VALVTGANKGIGFAI R+LC+QF+GDVVLTARD ARG AA +QLQAEGLSPRF
Sbjct: 1 MSAASRVALVTGANKGIGFAIARELCRQFSGDVVLTARDEARGRAAVQQLQAEGLSPRFH 60
Query: 294 HLDILYLQIIRALCDFMRKEYGGLDVLVYNA 386
LDI LQ IRAL DF+RKEYGGLDVLV NA
Sbjct: 61 LLDIDDLQSIRALRDFLRKEYGGLDVLVNNA 91
Score = 106 bits (264), Expect(2) = 4e-56
Identities = 72/175 (41%), Positives = 92/175 (52%), Gaps = 9/175 (5%)
Frame = +1
Query: 391 ITFQLDNPTPFHIHAELTMITNFMGTLNECTKLLPLINPQGRVVNVSSTSCVIALNECSP 570
I F+ ++PTPFHI AE+TM TNF GT + CT+LLPL+ PQGRVVNVSS V AL CSP
Sbjct: 93 IAFKTNDPTPFHIQAEVTMKTNFFGTRDVCTELLPLMKPQGRVVNVSSVVSVRALKSCSP 152
Query: 571 ELQRMFNIETLT*NELVGLIKKFCGTH*HGVAKVRLMY*FELRNE---------QNLGPQ 723
ELQ+ F E +T ELVGL+ KF GV RNE +G
Sbjct: 153 ELQQKFRSEAITEEELVGLMNKFVEDTKKGVH----------RNEGWPDNAYGVTKIGVT 202
Query: 724 VCKEFCPESEITE*HRNIIPLIAFFPWRVTSNLGGNIASQSHNL*AKNPTFLSLL 888
V + + I L A P V +++ G A +S A+ P +L+LL
Sbjct: 203 VLSRIHARKLSEQRRDDKILLNACCPGWVRTDMAGPRAPKSPEEGAETPVYLALL 257
>ref|XP_544873.2| PREDICTED: similar to carbonyl reductase 3 [Canis familiaris]
Length = 484
Score = 133 bits (334), Expect(2) = 1e-52
Identities = 74/110 (67%), Positives = 85/110 (77%)
Frame = +3
Query: 57 P*NHTTLHSTRQSTYTTPSMSSNTPVALVTGANKGIGFAIVRDLCQQFAGDVVLTARDVA 236
P + + S R P+MSS + VALVTGAN+GIGFAI R+LC+QF+GDVVLTARD A
Sbjct: 189 PGARSPVRSPRAPGPPLPAMSSCSRVALVTGANRGIGFAIARELCRQFSGDVVLTARDEA 248
Query: 237 RGLAAEKQLQAEGLSPRFSHLDILYLQIIRALCDFMRKEYGGLDVLVYNA 386
RG AA +QLQAEGLSPRF LDI LQ IRAL DF+RKEYGGL+VLV NA
Sbjct: 249 RGRAAVQQLQAEGLSPRFHLLDIDDLQSIRALRDFLRKEYGGLNVLVNNA 298
Score = 93.6 bits (231), Expect(2) = 1e-52
Identities = 64/168 (38%), Positives = 88/168 (52%)
Frame = +1
Query: 391 ITFQLDNPTPFHIHAELTMITNFMGTLNECTKLLPLINPQGRVVNVSSTSCVIALNECSP 570
I F+ D+PTPF I AE+T+ TNF T N C +LLP+I P GRVVN+SS AL CS
Sbjct: 300 IAFKPDDPTPFDIQAEITLKTNFFATRNVCNELLPIIKPHGRVVNISSLEGSKALENCSA 359
Query: 571 ELQRMFNIETLT*NELVGLIKKFCGTH*HGVAKVRLMY*FELRNEQNLGPQVCKEFCPES 750
+LQ+ F ETLT +LV L+KKF + V + R + LG V
Sbjct: 360 DLQKKFQCETLTEEDLVDLMKKFVEDTSNEVHE-REGWPNSAYGVSKLGVTVLSRILAWR 418
Query: 751 EITE*HRNIIPLIAFFPWRVTSNLGGNIASQSHNL*AKNPTFLSLLSP 894
+ + I L A P V +++GG ++ A+ P +L+LL P
Sbjct: 419 LDEKRKVDRILLNACCPGWVKTDMGGPYGPRTVEEGAETPVYLALLPP 466
>ref|XP_537903.1| PREDICTED: similar to Carbonyl reductase [NADPH] 1 (NADPH-dependent
carbonyl reductase 1) (Prostaglandin-E(2) 9-reductase)
(Prostaglandin 9-ketoreductase) (15-hydroxyprostaglandin
dehydrogenase [NADP+]) [Canis familiaris]
Length = 296
Score = 117 bits (294), Expect(2) = 7e-51
Identities = 63/91 (69%), Positives = 72/91 (79%)
Frame = +3
Query: 114 MSSNTPVALVTGANKGIGFAIVRDLCQQFAGDVVLTARDVARGLAAEKQLQAEGLSPRFS 293
MS VA+VTGANKG+GFAI RDLC+ F GDV+LT+RD ARG AA + L+AEGLSPRF
Sbjct: 1 MSLALRVAVVTGANKGLGFAITRDLCRNFPGDVILTSRDEARGRAAVQHLKAEGLSPRFH 60
Query: 294 HLDILYLQIIRALCDFMRKEYGGLDVLVYNA 386
LDI LQ IRAL DF+ +EYGGLDVLV NA
Sbjct: 61 LLDIDNLQSIRALRDFLWEEYGGLDVLVNNA 91
Score = 102 bits (255), Expect(2) = 7e-51
Identities = 67/168 (39%), Positives = 92/168 (54%), Gaps = 2/168 (1%)
Frame = +1
Query: 391 ITFQLDNPTPFHIHAELTMITNFMGTLNECTKLLPLINPQGRVVNVSSTSCVIALNECSP 570
I F D+PTP HI AE+T+ TNF GT + CT+LLPL+ PQGRVVNVSS +AL +CSP
Sbjct: 93 IVFTPDDPTPLHIQAEVTLKTNFFGTRDICTELLPLVKPQGRVVNVSSIMSFLALKQCSP 152
Query: 571 ELQRMFNIETLT*NELVGLIKKFCGTH*HGVAKVRLMY*FELR--NEQNLGPQVCKEFCP 744
ELQ+ F ET+T EL L+ KF +GV K ++ + +G V
Sbjct: 153 ELQQKFTSETITEEELGMLMNKFLEDVKNGVHKKEGWPDIKIAAYSVSKMGVTVLSRIHA 212
Query: 745 ESEITE*HRNIIPLIAFFPWRVTSNLGGNIASQSHNL*AKNPTFLSLL 888
+ + I L A P V +++GG +S A+ P +L+LL
Sbjct: 213 RKLSEQRRDDKILLNACCPGWVRTDMGGPKGIKSPEEGAETPVYLALL 260
>ref|XP_535589.2| PREDICTED: similar to Carbonyl reductase [NADPH] 1 (NADPH-dependent
carbonyl reductase 1) (Prostaglandin-E(2) 9-reductase)
(Prostaglandin 9-ketoreductase) (15-hydroxyprostaglandin
dehydrogenase [NADP+]) [Canis familiaris]
Length = 292
Score = 118 bits (295), Expect(2) = 2e-47
Identities = 65/98 (66%), Positives = 75/98 (76%)
Frame = +3
Query: 114 MSSNTPVALVTGANKGIGFAIVRDLCQQFAGDVVLTARDVARGLAAEKQLQAEGLSPRFS 293
MSS VA+VTGANKG+GFAI+RDLC+ F+GDVVLTARD ARG AA +QLQ++GLSPRF
Sbjct: 1 MSSAPRVAVVTGANKGLGFAIMRDLCRNFSGDVVLTARDEARGRAAVQQLQSKGLSPRFH 60
Query: 294 HLDILYLQIIRALCDFMRKEYGGLDVLVYNASHHLPVG 407
LDI LQ I L DF+ KEY GLDVLV NA + G
Sbjct: 61 LLDIDDLQSICTLRDFLCKEYRGLDVLVNNAGINFDTG 98
Score = 90.9 bits (224), Expect(2) = 2e-47
Identities = 48/93 (51%), Positives = 59/93 (63%)
Frame = +1
Query: 391 ITFQLDNPTPFHIHAELTMITNFMGTLNECTKLLPLINPQGRVVNVSSTSCVIALNECSP 570
I F +PTP I AE+T+ TNF GT N C +LLPL+ PQGRVVNVSS + L +CSP
Sbjct: 93 INFDTGDPTPLPIQAEVTLKTNFFGTRNVCRELLPLMKPQGRVVNVSSVMGFVTLKQCSP 152
Query: 571 ELQRMFNIETLT*NELVGLIKKFCGTH*HGVAK 669
ELQ+ F E +T EL L+ KF +GV K
Sbjct: 153 ELQQKFTSEAITEEELGMLMNKFVEDVKNGVHK 185
Database: RefSeqCP
Posted date: Aug 1, 2006 9:25 PM
Number of letters in database: 19,266,565
Number of sequences in database: 33,732
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 53,089,615
Number of Sequences: 33732
Number of extensions: 1437897
Number of successful extensions: 4378
Number of sequences better than 1.0e-05: 4
Number of HSP's better than 0.0 without gapping: 3805
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4356
length of database: 19,266,565
effective HSP length: 106
effective length of database: 15,690,973
effective search space used: 5256475955
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
Search to RefSeqHP
BLASTX 2.2.10 [Oct-19-2004]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20060611S-056808
(1325 letters)
Database: RefSeqHP
39,411 sequences; 17,774,539 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001748.1| carbonyl reductase 1 [Homo sapiens] 131 8e-58
Alignment gi|NP_001227.1| carbonyl reductase 3 [Homo sapiens] 131 3e-52
>ref|NP_001748.1| carbonyl reductase 1 [Homo sapiens]
Length = 277
Score = 131 bits (330), Expect(2) = 8e-58
Identities = 71/91 (78%), Positives = 75/91 (82%)
Frame = +3
Query: 114 MSSNTPVALVTGANKGIGFAIVRDLCQQFAGDVVLTARDVARGLAAEKQLQAEGLSPRFS 293
MSS VALVTG NKGIG AIVRDLC+ F+GDVVLTARDV RG AA +QLQAEGLSPRF
Sbjct: 1 MSSGIHVALVTGGNKGIGLAIVRDLCRLFSGDVVLTARDVTRGQAAVQQLQAEGLSPRFH 60
Query: 294 HLDILYLQIIRALCDFMRKEYGGLDVLVYNA 386
LDI LQ IRAL DF+RKEYGGLDVLV NA
Sbjct: 61 QLDIDDLQSIRALRDFLRKEYGGLDVLVNNA 91
Score = 112 bits (279), Expect(2) = 8e-58
Identities = 72/168 (42%), Positives = 95/168 (56%)
Frame = +1
Query: 391 ITFQLDNPTPFHIHAELTMITNFMGTLNECTKLLPLINPQGRVVNVSSTSCVIALNECSP 570
I F++ +PTPFHI AE+TM TNF GT + CT+LLPLI PQGRVVNVSS V AL CSP
Sbjct: 93 IAFKVADPTPFHIQAEVTMKTNFFGTRDVCTELLPLIKPQGRVVNVSSIMSVRALKSCSP 152
Query: 571 ELQRMFNIETLT*NELVGLIKKFCGTH*HGVAKVRLMY*FELRNEQNLGPQVCKEFCPES 750
ELQ+ F ET+T ELVGL+ KF GV + + + +G V
Sbjct: 153 ELQQKFRSETITEEELVGLMNKFVEDTKKGVHQ-KEGWPSSAYGVTKIGVTVLSRIHARK 211
Query: 751 EITE*HRNIIPLIAFFPWRVTSNLGGNIASQSHNL*AKNPTFLSLLSP 894
+ + I L A P V +++ G A++S A+ P +L+LL P
Sbjct: 212 LSEQRKGDKILLNACCPGWVRTDMAGPKATKSPEEGAETPVYLALLPP 259
>ref|NP_001227.1| carbonyl reductase 3 [Homo sapiens]
Length = 277
Score = 131 bits (329), Expect(2) = 3e-52
Identities = 70/92 (76%), Positives = 79/92 (85%)
Frame = +3
Query: 114 MSSNTPVALVTGANKGIGFAIVRDLCQQFAGDVVLTARDVARGLAAEKQLQAEGLSPRFS 293
MSS + VALVTGAN+GIG AI R+LC+QF+GDVVLTARDVARG AA +QLQAEGLSPRF
Sbjct: 1 MSSCSRVALVTGANRGIGLAIARELCRQFSGDVVLTARDVARGQAAVQQLQAEGLSPRFH 60
Query: 294 HLDILYLQIIRALCDFMRKEYGGLDVLVYNAS 389
LDI LQ IRAL DF+RKEYGGL+VLV NA+
Sbjct: 61 QLDIDDLQSIRALRDFLRKEYGGLNVLVNNAA 92
Score = 94.0 bits (232), Expect(2) = 3e-52
Identities = 44/84 (52%), Positives = 58/84 (69%)
Frame = +1
Query: 388 AITFQLDNPTPFHIHAELTMITNFMGTLNECTKLLPLINPQGRVVNVSSTSCVIALNECS 567
A+ F+ D+P PF I AE+T+ TNF T N C +LLP++ P GRVVN+SS C+ A CS
Sbjct: 92 AVAFKSDDPMPFDIKAEMTLKTNFFATRNMCNELLPIMKPHGRVVNISSLQCLRAFENCS 151
Query: 568 PELQRMFNIETLT*NELVGLIKKF 639
+LQ F+ ETLT +LV L+KKF
Sbjct: 152 EDLQERFHSETLTEGDLVDLMKKF 175
Database: RefSeqHP
Posted date: Aug 2, 2006 12:57 AM
Number of letters in database: 17,774,539
Number of sequences in database: 39,411
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 50,869,210
Number of Sequences: 39411
Number of extensions: 1427234
Number of successful extensions: 4750
Number of sequences better than 1.0e-05: 2
Number of HSP's better than 0.0 without gapping: 3939
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4725
length of database: 17,774,539
effective HSP length: 105
effective length of database: 13,636,384
effective search space used: 4581825024
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
Search to RefSeqMP
BLASTX 2.2.10 [Oct-19-2004]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20060611S-056808
(1325 letters)
Database: RefSeqMP
45,328 sequences; 21,768,885 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_487442.1| PREDICTED: similar to Carbonyl reductase [NADPH... 118 4e-53
Alignment gi|XP_989090.1| PREDICTED: similar to Carbonyl reductase [NADPH... 118 4e-53
Alignment gi|NP_031646.1| carbonyl reductase 1 [Mus musculus] 124 4e-52
Alignment gi|NP_766635.1| carbonyl reductase 3 [Mus musculus] 129 8e-51
Alignment gi|XP_359206.3| PREDICTED: similar to Carbonyl reductase [NADPH... 124 4e-48
Alignment gi|NP_780581.1| retinol dehydrogenase 13 (all-trans and 9-cis) ... 50 7e-06
>ref|XP_487442.1| PREDICTED: similar to Carbonyl reductase [NADPH] 1 (NADPH-dependent
carbonyl reductase 1) [Mus musculus]
Length = 277
Score = 118 bits (296), Expect(2) = 4e-53
Identities = 64/91 (70%), Positives = 72/91 (79%)
Frame = +3
Query: 114 MSSNTPVALVTGANKGIGFAIVRDLCQQFAGDVVLTARDVARGLAAEKQLQAEGLSPRFS 293
MS + VALVTG NKGIGF I+RDLCQ+F+GDVVLTARD ARG AA ++LQAEGL+PRF
Sbjct: 1 MSPCSRVALVTGGNKGIGFEIIRDLCQKFSGDVVLTARDEARGCAAVQKLQAEGLNPRFH 60
Query: 294 HLDILYLQIIRALCDFMRKEYGGLDVLVYNA 386
LDI Q I AL DF+ KEY GLDVLV NA
Sbjct: 61 QLDIDDPQSIHALRDFLLKEYKGLDVLVNNA 91
Score = 109 bits (273), Expect(2) = 4e-53
Identities = 69/168 (41%), Positives = 95/168 (56%)
Frame = +1
Query: 391 ITFQLDNPTPFHIHAELTMITNFMGTLNECTKLLPLINPQGRVVNVSSTSCVIALNECSP 570
I F++D+PTPFHI E+TM TNF GT + C ++LPLI PQGRVVNVSS + AL +CSP
Sbjct: 93 IAFKVDDPTPFHIKGEVTMKTNFFGTRDVCKEMLPLIKPQGRVVNVSSMVSLSALKDCSP 152
Query: 571 ELQRMFNIETLT*NELVGLIKKFCGTH*HGVAKVRLMY*FELRNEQNLGPQVCKEFCPES 750
ELQ+ F ET+T ELVGL+ K+ GV V+ + +G V
Sbjct: 153 ELQQKFRSETITEEELVGLMNKYVEDAKKGV-YVKEDWPNSAYEVSKIGVTVLSRILARK 211
Query: 751 EITE*HRNIIPLIAFFPWRVTSNLGGNIASQSHNL*AKNPTFLSLLSP 894
+ + I L A P V +++ G A++S A+ P +L+LL P
Sbjct: 212 LNEQRRGDKILLNACCPGWVRTDMTGPQATKSPEEGAETPVYLALLPP 259
>ref|XP_989090.1| PREDICTED: similar to Carbonyl reductase [NADPH] 1 (NADPH-dependent
carbonyl reductase 1) [Mus musculus]
Length = 277
Score = 118 bits (296), Expect(2) = 4e-53
Identities = 64/91 (70%), Positives = 72/91 (79%)
Frame = +3
Query: 114 MSSNTPVALVTGANKGIGFAIVRDLCQQFAGDVVLTARDVARGLAAEKQLQAEGLSPRFS 293
MS + VALVTG NKGIGF I+RDLCQ+F+GDVVLTARD ARG AA ++LQAEGL+PRF
Sbjct: 1 MSPCSRVALVTGGNKGIGFEIIRDLCQKFSGDVVLTARDEARGCAAVQKLQAEGLNPRFH 60
Query: 294 HLDILYLQIIRALCDFMRKEYGGLDVLVYNA 386
LDI Q I AL DF+ KEY GLDVLV NA
Sbjct: 61 QLDIDDPQSIHALRDFLLKEYKGLDVLVNNA 91
Score = 109 bits (273), Expect(2) = 4e-53
Identities = 69/168 (41%), Positives = 95/168 (56%)
Frame = +1
Query: 391 ITFQLDNPTPFHIHAELTMITNFMGTLNECTKLLPLINPQGRVVNVSSTSCVIALNECSP 570
I F++D+PTPFHI E+TM TNF GT + C ++LPLI PQGRVVNVSS + AL +CSP
Sbjct: 93 IAFKVDDPTPFHIKGEVTMKTNFFGTRDVCKEMLPLIKPQGRVVNVSSMVSLSALKDCSP 152
Query: 571 ELQRMFNIETLT*NELVGLIKKFCGTH*HGVAKVRLMY*FELRNEQNLGPQVCKEFCPES 750
ELQ+ F ET+T ELVGL+ K+ GV V+ + +G V
Sbjct: 153 ELQQKFRSETITEEELVGLMNKYVEDAKKGV-YVKEDWPNSAYEVSKIGVTVLSRILARK 211
Query: 751 EITE*HRNIIPLIAFFPWRVTSNLGGNIASQSHNL*AKNPTFLSLLSP 894
+ + I L A P V +++ G A++S A+ P +L+LL P
Sbjct: 212 LNEQRRGDKILLNACCPGWVRTDMTGPQATKSPEEGAETPVYLALLPP 259
>ref|NP_031646.1| carbonyl reductase 1 [Mus musculus]
Length = 277
Score = 124 bits (310), Expect(2) = 4e-52
Identities = 66/91 (72%), Positives = 73/91 (80%)
Frame = +3
Query: 114 MSSNTPVALVTGANKGIGFAIVRDLCQQFAGDVVLTARDVARGLAAEKQLQAEGLSPRFS 293
MSS+ PVALVTGANKGIGFAI RDLC++F+GDVVL ARD RG A ++LQAEGLSPRF
Sbjct: 1 MSSSRPVALVTGANKGIGFAITRDLCRKFSGDVVLAARDEERGQTAVQKLQAEGLSPRFH 60
Query: 294 HLDILYLQIIRALCDFMRKEYGGLDVLVYNA 386
LDI Q IRAL DF+ KEYGGLDVLV A
Sbjct: 61 QLDIDNPQSIRALRDFLLKEYGGLDVLVNKA 91
Score = 100 bits (250), Expect(2) = 4e-52
Identities = 67/168 (39%), Positives = 90/168 (53%)
Frame = +1
Query: 391 ITFQLDNPTPFHIHAELTMITNFMGTLNECTKLLPLINPQGRVVNVSSTSCVIALNECSP 570
I F++++ TPFHI AE+TM TNF GT + C +LLPLI PQGRVVNVSS + AL C
Sbjct: 93 IAFKVNDDTPFHIQAEVTMETNFFGTRDVCKELLPLIKPQGRVVNVSSMVSLRALKNCRL 152
Query: 571 ELQRMFNIETLT*NELVGLIKKFCGTH*HGVAKVRLMY*FELRNEQNLGPQVCKEFCPES 750
ELQ+ F ET+T ELVGL+ KF GV + +G V
Sbjct: 153 ELQQKFRSETITEEELVGLMNKFVEDTKKGV-HAEEGWPNSAYGVTKIGVTVLSRILARK 211
Query: 751 EITE*HRNIIPLIAFFPWRVTSNLGGNIASQSHNL*AKNPTFLSLLSP 894
+ + I L A P V +++ G A++S A+ P +L+LL P
Sbjct: 212 LNEQRREDKILLNACCPGWVRTDMAGPKATKSPEEGAETPVYLALLPP 259
>ref|NP_766635.1| carbonyl reductase 3 [Mus musculus]
Length = 277
Score = 129 bits (324), Expect(2) = 8e-51
Identities = 70/91 (76%), Positives = 77/91 (84%)
Frame = +3
Query: 114 MSSNTPVALVTGANKGIGFAIVRDLCQQFAGDVVLTARDVARGLAAEKQLQAEGLSPRFS 293
MSS + VALVTGANKGIGFAI RDLC++F+GDVVLTARD ARG AA +QLQAEGLSPRF
Sbjct: 1 MSSCSRVALVTGANKGIGFAITRDLCRKFSGDVVLTARDEARGRAAVQQLQAEGLSPRFH 60
Query: 294 HLDILYLQIIRALCDFMRKEYGGLDVLVYNA 386
LDI Q IRAL DF+RKEYGGL+VLV NA
Sbjct: 61 QLDIDDPQSIRALRDFLRKEYGGLNVLVNNA 91
Score = 91.3 bits (225), Expect(2) = 8e-51
Identities = 44/83 (53%), Positives = 58/83 (69%)
Frame = +1
Query: 391 ITFQLDNPTPFHIHAELTMITNFMGTLNECTKLLPLINPQGRVVNVSSTSCVIALNECSP 570
I F++D+PTPF I AE+T+ TNF T N CT+LLP++ P GRVVN+SS + AL C
Sbjct: 93 IAFRMDDPTPFDIQAEVTLKTNFFATRNVCTELLPIMKPHGRVVNISSLQGLKALENCRE 152
Query: 571 ELQRMFNIETLT*NELVGLIKKF 639
+LQ F +TLT +LV L+KKF
Sbjct: 153 DLQEKFRCDTLTEVDLVDLMKKF 175
>ref|XP_359206.3| PREDICTED: similar to Carbonyl reductase [NADPH] 1 (NADPH-dependent
carbonyl reductase 1) [Mus musculus]
Length = 277
Score = 124 bits (311), Expect(2) = 4e-48
Identities = 67/91 (73%), Positives = 74/91 (81%)
Frame = +3
Query: 114 MSSNTPVALVTGANKGIGFAIVRDLCQQFAGDVVLTARDVARGLAAEKQLQAEGLSPRFS 293
M S + +ALVTGANKGIGFAI RDLCQQF+GDVVLTARD ARGLAA ++LQAEGL PRF
Sbjct: 1 MPSCSRIALVTGANKGIGFAITRDLCQQFSGDVVLTARDEARGLAAVQKLQAEGLIPRFH 60
Query: 294 HLDILYLQIIRALCDFMRKEYGGLDVLVYNA 386
LDI Q I AL +F+ KEYGGLDVLV NA
Sbjct: 61 QLDINDPQSIHALRNFLLKEYGGLDVLVNNA 91
Score = 87.0 bits (214), Expect(2) = 4e-48
Identities = 63/168 (37%), Positives = 85/168 (50%)
Frame = +1
Query: 391 ITFQLDNPTPFHIHAELTMITNFMGTLNECTKLLPLINPQGRVVNVSSTSCVIALNECSP 570
I ++ + T FHI E M TNF GT CT+LLPLI QGRVVN+SS + AL CS
Sbjct: 93 IAYKGTDLTHFHILREAAMKTNFFGTQAVCTELLPLIKTQGRVVNISSLISLEALKNCSL 152
Query: 571 ELQRMFNIETLT*NELVGLIKKFCGTH*HGVAKVRLMY*FELRNEQNLGPQVCKEFCPES 750
ELQ+ F ET+T ELVGL+ KF GV + + +G V
Sbjct: 153 ELQQKFRSETITEEELVGLMNKFVEDTKKGV-HAKEGWPNSAYGVSKIGVTVLSRILARK 211
Query: 751 EITE*HRNIIPLIAFFPWRVTSNLGGNIASQSHNL*AKNPTFLSLLSP 894
+ + I L A P V +++ G A++S A+ P +L+LL P
Sbjct: 212 LNEQRRGDKILLNACCPGWVRTDMAGPQATKSPEEGAETPVYLALLPP 259
>ref|NP_780581.1| retinol dehydrogenase 13 (all-trans and 9-cis) [Mus musculus]
Length = 334
Score = 49.7 bits (117), Expect = 7e-06
Identities = 32/86 (37%), Positives = 49/86 (56%), Gaps = 2/86 (2%)
Frame = +3
Query: 138 LVTGANKGIGFAIVRDLCQQFAGDVVLTARDVARGLAAEKQLQAEGLSPRF--SHLDILY 311
+VTGAN GIG +L ++ G+V+L RD+ + A K ++ E L+PR LD+
Sbjct: 42 IVTGANTGIGKQTALELAKR-GGNVILACRDMEKCEVAAKDIRGETLNPRVRAERLDLAS 100
Query: 312 LQIIRALCDFMRKEYGGLDVLVYNAS 389
L+ IR + KE +D+LV NA+
Sbjct: 101 LKSIREFARKVIKEEERVDILVNNAA 126
Database: RefSeqMP
Posted date: Aug 2, 2006 12:58 AM
Number of letters in database: 21,768,885
Number of sequences in database: 45,328
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 61,221,905
Number of Sequences: 45328
Number of extensions: 1673054
Number of successful extensions: 5334
Number of sequences better than 1.0e-05: 6
Number of HSP's better than 0.0 without gapping: 4532
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5318
length of database: 21,768,885
effective HSP length: 107
effective length of database: 16,918,789
effective search space used: 5650875526
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)