Animal-Genome cDNA 20060611S-056818


Search to RefSeqSP

BLASTX 2.2.10 [Oct-19-2004]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20060611S-056818
         (1110 letters)

Database: RefSeqSP 
           1040 sequences; 434,620 total letters

Searching...done

 ***** No hits found ******

  Database: RefSeqSP
    Posted date:  Aug 1, 2006  7:14 PM
  Number of letters in database: 434,620
  Number of sequences in database:  1040
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,047,833
Number of Sequences: 1040
Number of extensions: 26692
Number of successful extensions: 57
Number of sequences better than 1.0e-05: 0
Number of HSP's better than  0.0 without gapping: 55
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 57
length of database: 434,620
effective HSP length: 78
effective length of database: 353,500
effective search space used: 102868500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

Search to RefSeqBP

BLASTX 2.2.10 [Oct-19-2004]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20060611S-056818
         (1110 letters)

Database: RefSeqBP 
           33,508 sequences; 16,112,626 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_001013619.2| histocompatibility complex, class II, DQ alp...   195   4e-63
Alignment   gi|NP_001012699.1| major histocompatibility complex, class II, ...   181   9e-59
Alignment   gi|NP_001012693.1| major histocompatibility complex, class II, ...   177   7e-58
Alignment   gi|NP_001012696.1| major histocompatibility complex, class II, ...   147   1e-45
Alignment   gi|XP_604082.2| PREDICTED: similar to HLA class II histocompati...   103   4e-32
Alignment   gi|XP_883292.1| PREDICTED: similar to HLA class II histocompati...   100   2e-31
Alignment   gi|NP_001012695.1| major histocompatibility complex, class II, ...    92   2e-26

>ref|NP_001013619.2| histocompatibility complex, class II, DQ alpha, type 1 [Bos taurus]
          Length = 255

 Score =  195 bits (496), Expect(2) = 4e-63
 Identities = 90/126 (71%), Positives = 109/126 (86%)
 Frame = +2

Query: 257 MVPGRVLMWGALALTTVMSACGGEDIAADHVASYGLNVYQSYGPSGYFTHEFDGDEEFYV 436
           MV  R L+ GALALTT+MS  G EDI ADH+ +YG+++Y +YGPSGY+THEFDGDEEFYV
Sbjct: 1   MVLNRALILGALALTTMMSPSGSEDIVADHIGTYGISIYHTYGPSGYYTHEFDGDEEFYV 60

Query: 437 DLDKKETVWRLPLFSEFTSFDPHGALRNIATLKHNLNIVTKRSNNTAADNQVPEVTVFSK 616
           DL+K+ETVWRLP+FS+F +FDP GALRNIAT KHNL IV +RSN+TAA N+VPEVTVFSK
Sbjct: 61  DLEKRETVWRLPVFSKFATFDPQGALRNIATTKHNLEIVIQRSNSTAATNKVPEVTVFSK 120

Query: 617 SPLITG 634
           SP++ G
Sbjct: 121 SPVMLG 126



 Score = 65.5 bits (158), Expect(2) = 4e-63
 Identities = 28/30 (93%), Positives = 28/30 (93%)
 Frame = +3

Query: 630 LGQPNTLICHVDNIFPPVINITWLEKGHSV 719
           LGQPNTLICHVDNIFPPVINITWL  GHSV
Sbjct: 125 LGQPNTLICHVDNIFPPVINITWLRNGHSV 154


>ref|NP_001012699.1| major histocompatibility complex, class II, DQ alpha 1 [Bos taurus]
          Length = 268

 Score =  181 bits (460), Expect(2) = 9e-59
 Identities = 87/126 (69%), Positives = 101/126 (80%)
 Frame = +2

Query: 257 MVPGRVLMWGALALTTVMSACGGEDIAADHVASYGLNVYQSYGPSGYFTHEFDGDEEFYV 436
           MV  R L+ GALALTT+MS+ GGEDI ADHV SYG  +YQS+GPSG +T EFDGDE FYV
Sbjct: 1   MVLNRALILGALALTTMMSSSGGEDIVADHVGSYGTEIYQSHGPSGQYTQEFDGDEMFYV 60

Query: 437 DLDKKETVWRLPLFSEFTSFDPHGALRNIATLKHNLNIVTKRSNNTAADNQVPEVTVFSK 616
           DL KKETVWRLP+FS+F  FDP  AL  IAT KHNL+++TKRSN T   N+VPEVTVFSK
Sbjct: 61  DLGKKETVWRLPMFSQFAGFDPQAALSEIATAKHNLDVLTKRSNFTPVINEVPEVTVFSK 120

Query: 617 SPLITG 634
           SP++ G
Sbjct: 121 SPVMLG 126



 Score = 64.7 bits (156), Expect(2) = 9e-59
 Identities = 27/30 (90%), Positives = 29/30 (96%)
 Frame = +3

Query: 630 LGQPNTLICHVDNIFPPVINITWLEKGHSV 719
           LGQPNTLICHVDNIFPPVINITWL+ GH+V
Sbjct: 125 LGQPNTLICHVDNIFPPVINITWLKNGHAV 154


>ref|NP_001012693.1| major histocompatibility complex, class II, DQ alpha [Bos taurus]
          Length = 255

 Score =  177 bits (450), Expect(2) = 7e-58
 Identities = 85/126 (67%), Positives = 103/126 (81%)
 Frame = +2

Query: 257 MVPGRVLMWGALALTTVMSACGGEDIAADHVASYGLNVYQSYGPSGYFTHEFDGDEEFYV 436
           MV  R L+ G LALTT+MS  GGEDI ADHV  YG+++YQSYGPSG +THEFDGDE+FYV
Sbjct: 1   MVLNRALILGTLALTTMMSPSGGEDIVADHVGIYGISIYQSYGPSGQYTHEFDGDEQFYV 60

Query: 437 DLDKKETVWRLPLFSEFTSFDPHGALRNIATLKHNLNIVTKRSNNTAADNQVPEVTVFSK 616
           DL+KKET W+LPLFS   SFDP  ALRNIA +K +++ +TK SN+TAA N+VPEVTVFSK
Sbjct: 61  DLEKKETAWQLPLFSRMLSFDPQLALRNIAIMKLHVDFLTKFSNSTAATNKVPEVTVFSK 120

Query: 617 SPLITG 634
           SP++ G
Sbjct: 121 SPVMLG 126



 Score = 65.5 bits (158), Expect(2) = 7e-58
 Identities = 28/30 (93%), Positives = 28/30 (93%)
 Frame = +3

Query: 630 LGQPNTLICHVDNIFPPVINITWLEKGHSV 719
           LGQPNTLICHVDNIFPPVINITWL  GHSV
Sbjct: 125 LGQPNTLICHVDNIFPPVINITWLRNGHSV 154


>ref|NP_001012696.1| major histocompatibility complex, class II, DY alpha [Bos taurus]
          Length = 253

 Score =  147 bits (371), Expect(2) = 1e-45
 Identities = 73/122 (59%), Positives = 87/122 (71%)
 Frame = +2

Query: 269 RVLMWGALALTTVMSACGGEDIAADHVASYGLNVYQSYGPSGYFTHEFDGDEEFYVDLDK 448
           + L+  AL L T+MS  GGEDI ADHV +YG NVYQ+YG SG FT EFDGDE FYVDL K
Sbjct: 3   KALILRALTLATMMSPYGGEDIVADHVGTYGTNVYQTYGASGQFTFEFDGDELFYVDLGK 62

Query: 449 KETVWRLPLFSEFTSFDPHGALRNIATLKHNLNIVTKRSNNTAADNQVPEVTVFSKSPLI 628
           KETVWRLP FS  T F+   ALRNI   K NL+I+ K S+ T A +++PEV VF KS ++
Sbjct: 63  KETVWRLPEFSNITKFEVQSALRNIVMSKRNLDILIKNSSFTPATSEIPEVAVFPKSSVV 122

Query: 629 TG 634
            G
Sbjct: 123 LG 124



 Score = 55.1 bits (131), Expect(2) = 1e-45
 Identities = 26/37 (70%), Positives = 26/37 (70%)
 Frame = +3

Query: 609 FPSLL**LGQPNTLICHVDNIFPPVINITWLEKGHSV 719
           FP     LG PNTLIC VDNIFPPVINITW   GH V
Sbjct: 116 FPKSSVVLGIPNTLICQVDNIFPPVINITWFYNGHFV 152


>ref|XP_604082.2| PREDICTED: similar to HLA class II histocompatibility antigen, DO
           alpha chain precursor (MHC class II antigen DOA) (MHC DZ
           alpha) (MHC DN-alpha) isoform 1 [Bos taurus]
          Length = 250

 Score =  103 bits (256), Expect(2) = 4e-32
 Identities = 56/120 (46%), Positives = 71/120 (59%)
 Frame = +2

Query: 275 LMWGALALTTVMSACGGEDIAADHVASYGLNVYQSYGPSGYFTHEFDGDEEFYVDLDKKE 454
           L+ G   L T++S      I ADH+ SYG   YQSY  +G FT++FDG++ F VDL K+E
Sbjct: 7   LVLGLHTLMTLLSLQEVGAIKADHMGSYGPAFYQSYDGAGQFTYDFDGEQLFSVDLKKRE 66

Query: 455 TVWRLPLFSEFTSFDPHGALRNIATLKHNLNIVTKRSNNTAADNQVPEVTVFSKSPLITG 634
            VWRLP F  F  FDP   L +IA +K +L  + KRSN T A N  P V V  KS +  G
Sbjct: 67  AVWRLPEFGNFAYFDPQSGLVSIAMIKAHLEDLVKRSNGTRAPNVSPRVAVLPKSHVQLG 126



 Score = 53.9 bits (128), Expect(2) = 4e-32
 Identities = 23/30 (76%), Positives = 24/30 (80%)
 Frame = +3

Query: 630 LGQPNTLICHVDNIFPPVINITWLEKGHSV 719
           LG+PN LIC VD IFPPVINITWL  GH V
Sbjct: 125 LGEPNVLICIVDKIFPPVINITWLRNGHPV 154


>ref|XP_883292.1| PREDICTED: similar to HLA class II histocompatibility antigen, DO
           alpha chain precursor (MHC class II antigen DOA) (MHC DZ
           alpha) (MHC DN-alpha) isoform 2 [Bos taurus]
          Length = 251

 Score =  100 bits (250), Expect(2) = 2e-31
 Identities = 56/121 (46%), Positives = 72/121 (59%), Gaps = 1/121 (0%)
 Frame = +2

Query: 275 LMWGALALTTVMSACGGEDIAADHVASYGLNVYQSYGPSGYFTHEFDGDEEFYVDLDKKE 454
           L+ G   L T++S      I ADH+ SYG   YQSY  +G FT++FDG++ F VDL K+E
Sbjct: 7   LVLGLHTLMTLLSLQEVGAIKADHMGSYGPAFYQSYDGAGQFTYDFDGEQLFSVDLKKRE 66

Query: 455 TVWRLPLFSEFTSFDPHGALRNIATLKHNLNIVTKRSNNTAADN-QVPEVTVFSKSPLIT 631
            VWRLP F  F  FDP   L +IA +K +L  + KRSN T A N   P+V V  KS +  
Sbjct: 67  AVWRLPEFGNFAYFDPQSGLVSIAMIKAHLEDLVKRSNGTRAPNGSTPQVAVLPKSHVQL 126

Query: 632 G 634
           G
Sbjct: 127 G 127



 Score = 53.9 bits (128), Expect(2) = 2e-31
 Identities = 23/30 (76%), Positives = 24/30 (80%)
 Frame = +3

Query: 630 LGQPNTLICHVDNIFPPVINITWLEKGHSV 719
           LG+PN LIC VD IFPPVINITWL  GH V
Sbjct: 126 LGEPNVLICIVDKIFPPVINITWLRNGHPV 155


>ref|NP_001012695.1| major histocompatibility complex, class II, DR alpha [Bos taurus]
          Length = 253

 Score = 92.4 bits (228), Expect(2) = 2e-26
 Identities = 45/82 (54%), Positives = 55/82 (67%)
 Frame = +2

Query: 389 SGYFTHEFDGDEEFYVDLDKKETVWRLPLFSEFTSFDPHGALRNIATLKHNLNIVTKRSN 568
           S  F  +FDGDE F+VD+ KKETVWRLP F  F SF+  GAL N+A +K NL+I+ KRSN
Sbjct: 43  SAEFMFDFDGDEIFHVDMGKKETVWRLPEFGHFASFEAQGALANMAVMKANLDIMIKRSN 102

Query: 569 NTAADNQVPEVTVFSKSPLITG 634
           NT   N  PEVT+    P+  G
Sbjct: 103 NTPNTNVPPEVTLLPNKPVELG 124



 Score = 45.8 bits (107), Expect(2) = 2e-26
 Identities = 18/30 (60%), Positives = 22/30 (73%)
 Frame = +3

Query: 630 LGQPNTLICHVDNIFPPVINITWLEKGHSV 719
           LG+PNTLIC +D   PPVI++TWL  G  V
Sbjct: 123 LGEPNTLICFIDKFSPPVISVTWLRNGKPV 152


  Database: RefSeqBP
    Posted date:  Aug 1, 2006  7:14 PM
  Number of letters in database: 16,112,626
  Number of sequences in database:  33,508
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 38,775,157
Number of Sequences: 33508
Number of extensions: 1009296
Number of successful extensions: 2541
Number of sequences better than 1.0e-05: 7
Number of HSP's better than  0.0 without gapping: 2330
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2540
length of database: 16,112,626
effective HSP length: 103
effective length of database: 12,661,302
effective search space used: 3367906332
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

Search to RefSeqCP

BLASTX 2.2.10 [Oct-19-2004]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20060611S-056818
         (1110 letters)

Database: RefSeqCP 
           33,732 sequences; 19,266,565 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_001011726.1| MHC class II DLA DQalpha chain [Canis famili...   197   2e-61
Alignment   gi|NP_001011723.1| MHC class II DR alpha chain [Canis familiaris]     95   3e-27
Alignment   gi|XP_532104.2| PREDICTED: similar to HLA class II histocompati...    97   2e-20
Alignment   gi|XP_850803.1| PREDICTED: similar to HLA class II histocompati...    87   2e-17

>ref|NP_001011726.1| MHC class II DLA DQalpha chain [Canis familiaris]
          Length = 255

 Score =  197 bits (500), Expect(2) = 2e-61
 Identities = 93/126 (73%), Positives = 108/126 (85%)
 Frame = +2

Query: 257 MVPGRVLMWGALALTTVMSACGGEDIAADHVASYGLNVYQSYGPSGYFTHEFDGDEEFYV 436
           M+  RVL+ G L LT +MS  GGE+I ADHVA+YG+NVYQSYGPSG +THEFDGDEEFYV
Sbjct: 1   MILNRVLILGTLILTIMMSPSGGEEIVADHVANYGINVYQSYGPSGQYTHEFDGDEEFYV 60

Query: 437 DLDKKETVWRLPLFSEFTSFDPHGALRNIATLKHNLNIVTKRSNNTAADNQVPEVTVFSK 616
           DL+KKETVWRLP+FS F SFDP GALRN+A +K NLNI+TKRSN TAA N+VPEVTVFSK
Sbjct: 61  DLEKKETVWRLPVFSTFRSFDPQGALRNLAIIKQNLNIMTKRSNQTAATNEVPEVTVFSK 120

Query: 617 SPLITG 634
           SP++ G
Sbjct: 121 SPVMLG 126



 Score = 58.2 bits (139), Expect(2) = 2e-61
 Identities = 25/30 (83%), Positives = 27/30 (90%)
 Frame = +3

Query: 630 LGQPNTLICHVDNIFPPVINITWLEKGHSV 719
           LGQPNTLIC VDNIFPPVIN+TWL+  HSV
Sbjct: 125 LGQPNTLICLVDNIFPPVINVTWLKNRHSV 154


>ref|NP_001011723.1| MHC class II DR alpha chain [Canis familiaris]
          Length = 254

 Score = 94.7 bits (234), Expect(2) = 3e-27
 Identities = 48/88 (54%), Positives = 59/88 (67%)
 Frame = +2

Query: 371 YQSYGPSGYFTHEFDGDEEFYVDLDKKETVWRLPLFSEFTSFDPHGALRNIATLKHNLNI 550
           Y +  PSG F  +FDGDE F+VD++KKETVWRL  F  F SF+  GAL NIA  K NL+ 
Sbjct: 38  YLTPDPSGEFMFDFDGDEIFHVDMEKKETVWRLEEFGRFASFEAQGALANIAVDKANLDT 97

Query: 551 VTKRSNNTAADNQVPEVTVFSKSPLITG 634
           + KRSN+T   N  PEVTV S +P+  G
Sbjct: 98  MIKRSNHTPNTNVPPEVTVLSNTPVELG 125



 Score = 46.2 bits (108), Expect(2) = 3e-27
 Identities = 18/30 (60%), Positives = 22/30 (73%)
 Frame = +3

Query: 630 LGQPNTLICHVDNIFPPVINITWLEKGHSV 719
           LG+PN LIC +D   PPVIN+TWL  G+ V
Sbjct: 124 LGEPNILICFIDKFSPPVINVTWLRNGNPV 153


>ref|XP_532104.2| PREDICTED: similar to HLA class II histocompatibility antigen, DO
           alpha chain precursor (MHC class II antigen DOA) (MHC DZ
           alpha) (MHC DN-alpha) isoform 10 [Canis familiaris]
          Length = 142

 Score = 97.4 bits (241), Expect = 2e-20
 Identities = 46/92 (50%), Positives = 62/92 (67%)
 Frame = +2

Query: 332 IAADHVASYGLNVYQSYGPSGYFTHEFDGDEEFYVDLDKKETVWRLPLFSEFTSFDPHGA 511
           I ADH+ SYG   YQSYG SG F HEFDG++ F V+L K++ VWRLP F     FDP   
Sbjct: 12  IEADHMGSYGPAFYQSYGSSGQFAHEFDGEQLFSVELKKRQAVWRLPEFGNLAHFDPQNG 71

Query: 512 LRNIATLKHNLNIVTKRSNNTAADNQVPEVTV 607
           L +IA +K +L+++ +RSN T A N+ P+V +
Sbjct: 72  LASIAVIKAHLDVLVERSNRTRAINE-PQVPI 102


>ref|XP_850803.1| PREDICTED: similar to HLA class II histocompatibility antigen, DO
           alpha chain precursor (MHC class II antigen DOA) (MHC DZ
           alpha) (MHC DN-alpha) isoform 11 [Canis familiaris]
          Length = 227

 Score = 87.4 bits (215), Expect = 2e-17
 Identities = 40/80 (50%), Positives = 53/80 (66%)
 Frame = +2

Query: 347 VASYGLNVYQSYGPSGYFTHEFDGDEEFYVDLDKKETVWRLPLFSEFTSFDPHGALRNIA 526
           + SYG   YQSYG SG F HEFDG++ F V+L K++ VWRLP F     FDP   L +IA
Sbjct: 1   MGSYGPAFYQSYGSSGQFAHEFDGEQLFSVELKKRQAVWRLPEFGNLAHFDPQNGLASIA 60

Query: 527 TLKHNLNIVTKRSNNTAADN 586
            +K +L+++ +RSN T A N
Sbjct: 61  VIKAHLDVLVERSNRTRAIN 80



 Score = 56.2 bits (134), Expect = 6e-08
 Identities = 28/57 (49%), Positives = 34/57 (59%)
 Frame = +3

Query: 555 LNAPTTPRLTIKFLK*LCFPSLL**LGQPNTLICHVDNIFPPVINITWLEKGHSVQK 725
           L++P  PR+ +        P     LGQPN LIC VDNIFPPVINITWL  G  + +
Sbjct: 84  LSSPLPPRVAV-------LPKFRVELGQPNVLICIVDNIFPPVINITWLRNGQIISE 133


  Database: RefSeqCP
    Posted date:  Aug 1, 2006  9:25 PM
  Number of letters in database: 19,266,565
  Number of sequences in database:  33,732
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 45,633,979
Number of Sequences: 33732
Number of extensions: 1185856
Number of successful extensions: 3106
Number of sequences better than 1.0e-05: 4
Number of HSP's better than  0.0 without gapping: 2838
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3102
length of database: 19,266,565
effective HSP length: 104
effective length of database: 15,758,437
effective search space used: 4175985805
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

Search to RefSeqHP

BLASTX 2.2.10 [Oct-19-2004]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20060611S-056818
         (1110 letters)

Database: RefSeqHP 
           39,411 sequences; 17,774,539 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|XP_949974.1| PREDICTED: similar to HLA class II histocompati...   199   9e-63
Alignment   gi|XP_949973.1| PREDICTED: similar to HLA class II histocompati...   199   9e-63
Alignment   gi|XP_949971.1| PREDICTED: similar to HLA class II histocompati...   199   9e-63
Alignment   gi|XP_945969.1| PREDICTED: similar to HLA class II histocompati...   199   9e-63
Alignment   gi|XP_949969.1| PREDICTED: similar to HLA class II histocompati...   199   9e-63
Alignment   gi|NP_002113.2| major histocompatibility complex, class II, DQ ...   189   7e-59
Alignment   gi|XP_941306.1| PREDICTED: similar to HLA class II histocompati...   186   3e-58
Alignment   gi|XP_941305.1| PREDICTED: similar to HLA class II histocompati...   186   3e-58
Alignment   gi|XP_941304.1| PREDICTED: similar to HLA class II histocompati...   186   3e-58
Alignment   gi|XP_941255.1| PREDICTED: similar to HLA class II histocompati...   186   3e-58

>ref|XP_949974.1| PREDICTED: similar to HLA class II histocompatibility antigen,
           DQ(1) alpha chain precursor (DC-4 alpha chain) isoform
           10 [Homo sapiens]
          Length = 255

 Score =  199 bits (505), Expect(2) = 9e-63
 Identities = 95/126 (75%), Positives = 107/126 (84%)
 Frame = +2

Query: 257 MVPGRVLMWGALALTTVMSACGGEDIAADHVASYGLNVYQSYGPSGYFTHEFDGDEEFYV 436
           M+  + LM GALALTTVMS CGGEDI ADHVASYG+N+YQSYGPSG ++HEFDGDEEFYV
Sbjct: 1   MILNKALMLGALALTTVMSPCGGEDIVADHVASYGVNLYQSYGPSGQYSHEFDGDEEFYV 60

Query: 437 DLDKKETVWRLPLFSEFTSFDPHGALRNIATLKHNLNIVTKRSNNTAADNQVPEVTVFSK 616
           DL++KETVW+LPLF  F  FDP  AL NIA LKHNLNIV KRSN+TAA N+VPEVTVFSK
Sbjct: 61  DLERKETVWQLPLFRRFRRFDPQFALTNIAVLKHNLNIVIKRSNSTAATNEVPEVTVFSK 120

Query: 617 SPLITG 634
           SP+  G
Sbjct: 121 SPVTLG 126



 Score = 60.8 bits (146), Expect(2) = 9e-63
 Identities = 26/30 (86%), Positives = 27/30 (90%)
 Frame = +3

Query: 630 LGQPNTLICHVDNIFPPVINITWLEKGHSV 719
           LGQPNTLIC VDNIFPPV+NITWL  GHSV
Sbjct: 125 LGQPNTLICLVDNIFPPVVNITWLSNGHSV 154


>ref|XP_949973.1| PREDICTED: similar to HLA class II histocompatibility antigen,
           DQ(1) alpha chain precursor (DC-4 alpha chain) isoform 9
           [Homo sapiens]
          Length = 255

 Score =  199 bits (505), Expect(2) = 9e-63
 Identities = 95/126 (75%), Positives = 107/126 (84%)
 Frame = +2

Query: 257 MVPGRVLMWGALALTTVMSACGGEDIAADHVASYGLNVYQSYGPSGYFTHEFDGDEEFYV 436
           M+  + LM GALALTTVMS CGGEDI ADHVASYG+N+YQSYGPSG ++HEFDGDEEFYV
Sbjct: 1   MILNKALMLGALALTTVMSPCGGEDIVADHVASYGVNLYQSYGPSGQYSHEFDGDEEFYV 60

Query: 437 DLDKKETVWRLPLFSEFTSFDPHGALRNIATLKHNLNIVTKRSNNTAADNQVPEVTVFSK 616
           DL++KETVW+LPLF  F  FDP  AL NIA LKHNLNIV KRSN+TAA N+VPEVTVFSK
Sbjct: 61  DLERKETVWQLPLFRRFRRFDPQFALTNIAVLKHNLNIVIKRSNSTAATNEVPEVTVFSK 120

Query: 617 SPLITG 634
           SP+  G
Sbjct: 121 SPVTLG 126



 Score = 60.8 bits (146), Expect(2) = 9e-63
 Identities = 26/30 (86%), Positives = 27/30 (90%)
 Frame = +3

Query: 630 LGQPNTLICHVDNIFPPVINITWLEKGHSV 719
           LGQPNTLIC VDNIFPPV+NITWL  GHSV
Sbjct: 125 LGQPNTLICLVDNIFPPVVNITWLSNGHSV 154


>ref|XP_949971.1| PREDICTED: similar to HLA class II histocompatibility antigen,
           DQ(1) alpha chain precursor (DC-4 alpha chain) isoform 8
           [Homo sapiens]
          Length = 255

 Score =  199 bits (505), Expect(2) = 9e-63
 Identities = 95/126 (75%), Positives = 107/126 (84%)
 Frame = +2

Query: 257 MVPGRVLMWGALALTTVMSACGGEDIAADHVASYGLNVYQSYGPSGYFTHEFDGDEEFYV 436
           M+  + LM GALALTTVMS CGGEDI ADHVASYG+N+YQSYGPSG ++HEFDGDEEFYV
Sbjct: 1   MILNKALMLGALALTTVMSPCGGEDIVADHVASYGVNLYQSYGPSGQYSHEFDGDEEFYV 60

Query: 437 DLDKKETVWRLPLFSEFTSFDPHGALRNIATLKHNLNIVTKRSNNTAADNQVPEVTVFSK 616
           DL++KETVW+LPLF  F  FDP  AL NIA LKHNLNIV KRSN+TAA N+VPEVTVFSK
Sbjct: 61  DLERKETVWQLPLFRRFRRFDPQFALTNIAVLKHNLNIVIKRSNSTAATNEVPEVTVFSK 120

Query: 617 SPLITG 634
           SP+  G
Sbjct: 121 SPVTLG 126



 Score = 60.8 bits (146), Expect(2) = 9e-63
 Identities = 26/30 (86%), Positives = 27/30 (90%)
 Frame = +3

Query: 630 LGQPNTLICHVDNIFPPVINITWLEKGHSV 719
           LGQPNTLIC VDNIFPPV+NITWL  GHSV
Sbjct: 125 LGQPNTLICLVDNIFPPVVNITWLSNGHSV 154


>ref|XP_945969.1| PREDICTED: similar to HLA class II histocompatibility antigen,
           DQ(1) alpha chain precursor (DC-4 alpha chain) isoform 1
           [Homo sapiens]
          Length = 255

 Score =  199 bits (505), Expect(2) = 9e-63
 Identities = 95/126 (75%), Positives = 107/126 (84%)
 Frame = +2

Query: 257 MVPGRVLMWGALALTTVMSACGGEDIAADHVASYGLNVYQSYGPSGYFTHEFDGDEEFYV 436
           M+  + LM GALALTTVMS CGGEDI ADHVASYG+N+YQSYGPSG ++HEFDGDEEFYV
Sbjct: 1   MILNKALMLGALALTTVMSPCGGEDIVADHVASYGVNLYQSYGPSGQYSHEFDGDEEFYV 60

Query: 437 DLDKKETVWRLPLFSEFTSFDPHGALRNIATLKHNLNIVTKRSNNTAADNQVPEVTVFSK 616
           DL++KETVW+LPLF  F  FDP  AL NIA LKHNLNIV KRSN+TAA N+VPEVTVFSK
Sbjct: 61  DLERKETVWQLPLFRRFRRFDPQFALTNIAVLKHNLNIVIKRSNSTAATNEVPEVTVFSK 120

Query: 617 SPLITG 634
           SP+  G
Sbjct: 121 SPVTLG 126



 Score = 60.8 bits (146), Expect(2) = 9e-63
 Identities = 26/30 (86%), Positives = 27/30 (90%)
 Frame = +3

Query: 630 LGQPNTLICHVDNIFPPVINITWLEKGHSV 719
           LGQPNTLIC VDNIFPPV+NITWL  GHSV
Sbjct: 125 LGQPNTLICLVDNIFPPVVNITWLSNGHSV 154


>ref|XP_949969.1| PREDICTED: similar to HLA class II histocompatibility antigen,
           DQ(1) alpha chain precursor (DC-4 alpha chain) isoform 7
           [Homo sapiens]
          Length = 208

 Score =  199 bits (505), Expect(2) = 9e-63
 Identities = 95/126 (75%), Positives = 107/126 (84%)
 Frame = +2

Query: 257 MVPGRVLMWGALALTTVMSACGGEDIAADHVASYGLNVYQSYGPSGYFTHEFDGDEEFYV 436
           M+  + LM GALALTTVMS CGGEDI ADHVASYG+N+YQSYGPSG ++HEFDGDEEFYV
Sbjct: 1   MILNKALMLGALALTTVMSPCGGEDIVADHVASYGVNLYQSYGPSGQYSHEFDGDEEFYV 60

Query: 437 DLDKKETVWRLPLFSEFTSFDPHGALRNIATLKHNLNIVTKRSNNTAADNQVPEVTVFSK 616
           DL++KETVW+LPLF  F  FDP  AL NIA LKHNLNIV KRSN+TAA N+VPEVTVFSK
Sbjct: 61  DLERKETVWQLPLFRRFRRFDPQFALTNIAVLKHNLNIVIKRSNSTAATNEVPEVTVFSK 120

Query: 617 SPLITG 634
           SP+  G
Sbjct: 121 SPVTLG 126



 Score = 60.8 bits (146), Expect(2) = 9e-63
 Identities = 26/30 (86%), Positives = 27/30 (90%)
 Frame = +3

Query: 630 LGQPNTLICHVDNIFPPVINITWLEKGHSV 719
           LGQPNTLIC VDNIFPPV+NITWL  GHSV
Sbjct: 125 LGQPNTLICLVDNIFPPVVNITWLSNGHSV 154


>ref|NP_002113.2| major histocompatibility complex, class II, DQ alpha 1 precursor
           [Homo sapiens]
          Length = 255

 Score =  189 bits (479), Expect(2) = 7e-59
 Identities = 89/126 (70%), Positives = 104/126 (82%)
 Frame = +2

Query: 257 MVPGRVLMWGALALTTVMSACGGEDIAADHVASYGLNVYQSYGPSGYFTHEFDGDEEFYV 436
           M+  + L+ GALALTTVMS CGGEDI ADHVAS G+N+YQ YGPSG +THEFDGDE+FYV
Sbjct: 1   MILNKALLLGALALTTVMSPCGGEDIVADHVASCGVNLYQFYGPSGQYTHEFDGDEQFYV 60

Query: 437 DLDKKETVWRLPLFSEFTSFDPHGALRNIATLKHNLNIVTKRSNNTAADNQVPEVTVFSK 616
           DL++KET WR P FS+F  FDP GALRN+A  KHNLNI+ KR N+TAA N+VPEVTVFSK
Sbjct: 61  DLERKETAWRWPEFSKFGGFDPQGALRNMAVAKHNLNIMIKRYNSTAATNEVPEVTVFSK 120

Query: 617 SPLITG 634
           SP+  G
Sbjct: 121 SPVTLG 126



 Score = 57.8 bits (138), Expect(2) = 7e-59
 Identities = 25/30 (83%), Positives = 26/30 (86%)
 Frame = +3

Query: 630 LGQPNTLICHVDNIFPPVINITWLEKGHSV 719
           LGQPNTLIC VDNIFPPV+NITWL  G SV
Sbjct: 125 LGQPNTLICLVDNIFPPVVNITWLSNGQSV 154


>ref|XP_941306.1| PREDICTED: similar to HLA class II histocompatibility antigen,
           DQ(3) alpha chain precursor (DC-alpha) (HLA-DCA)
           (HLA-DQA1*05011) (HLA-DQA1*0502) isoform 10 [Homo
           sapiens]
          Length = 254

 Score =  186 bits (472), Expect(2) = 3e-58
 Identities = 91/126 (72%), Positives = 104/126 (82%)
 Frame = +2

Query: 257 MVPGRVLMWGALALTTVMSACGGEDIAADHVASYGLNVYQSYGPSGYFTHEFDGDEEFYV 436
           M+  + LM GALALTTVMS CGGEDI ADHVASYG+N+YQSYGPSG +THEFDGDE+FYV
Sbjct: 1   MILNKALMLGALALTTVMSPCGGEDIVADHVASYGVNLYQSYGPSGQYTHEFDGDEQFYV 60

Query: 437 DLDKKETVWRLPLFSEFTSFDPHGALRNIATLKHNLNIVTKRSNNTAADNQVPEVTVFSK 616
           DL +KETVW LP+  +F  FDP  AL NIA LKHNLN + KRSN+TAA N+VPEVTVFSK
Sbjct: 61  DLGRKETVWCLPVLRQF-RFDPQFALTNIAVLKHNLNSLIKRSNSTAATNEVPEVTVFSK 119

Query: 617 SPLITG 634
           SP+  G
Sbjct: 120 SPVTLG 125



 Score = 58.5 bits (140), Expect(2) = 3e-58
 Identities = 25/30 (83%), Positives = 26/30 (86%)
 Frame = +3

Query: 630 LGQPNTLICHVDNIFPPVINITWLEKGHSV 719
           LGQPN LIC VDNIFPPV+NITWL  GHSV
Sbjct: 124 LGQPNILICLVDNIFPPVVNITWLSNGHSV 153


>ref|XP_941305.1| PREDICTED: similar to HLA class II histocompatibility antigen,
           DQ(3) alpha chain precursor (DC-alpha) (HLA-DCA)
           (HLA-DQA1*05011) (HLA-DQA1*0502) isoform 9 [Homo
           sapiens]
          Length = 254

 Score =  186 bits (472), Expect(2) = 3e-58
 Identities = 91/126 (72%), Positives = 104/126 (82%)
 Frame = +2

Query: 257 MVPGRVLMWGALALTTVMSACGGEDIAADHVASYGLNVYQSYGPSGYFTHEFDGDEEFYV 436
           M+  + LM GALALTTVMS CGGEDI ADHVASYG+N+YQSYGPSG +THEFDGDE+FYV
Sbjct: 1   MILNKALMLGALALTTVMSPCGGEDIVADHVASYGVNLYQSYGPSGQYTHEFDGDEQFYV 60

Query: 437 DLDKKETVWRLPLFSEFTSFDPHGALRNIATLKHNLNIVTKRSNNTAADNQVPEVTVFSK 616
           DL +KETVW LP+  +F  FDP  AL NIA LKHNLN + KRSN+TAA N+VPEVTVFSK
Sbjct: 61  DLGRKETVWCLPVLRQF-RFDPQFALTNIAVLKHNLNSLIKRSNSTAATNEVPEVTVFSK 119

Query: 617 SPLITG 634
           SP+  G
Sbjct: 120 SPVTLG 125



 Score = 58.5 bits (140), Expect(2) = 3e-58
 Identities = 25/30 (83%), Positives = 26/30 (86%)
 Frame = +3

Query: 630 LGQPNTLICHVDNIFPPVINITWLEKGHSV 719
           LGQPN LIC VDNIFPPV+NITWL  GHSV
Sbjct: 124 LGQPNILICLVDNIFPPVVNITWLSNGHSV 153


>ref|XP_941304.1| PREDICTED: similar to HLA class II histocompatibility antigen,
           DQ(3) alpha chain precursor (DC-alpha) (HLA-DCA)
           (HLA-DQA1*05011) (HLA-DQA1*0502) isoform 8 [Homo
           sapiens]
          Length = 254

 Score =  186 bits (472), Expect(2) = 3e-58
 Identities = 91/126 (72%), Positives = 104/126 (82%)
 Frame = +2

Query: 257 MVPGRVLMWGALALTTVMSACGGEDIAADHVASYGLNVYQSYGPSGYFTHEFDGDEEFYV 436
           M+  + LM GALALTTVMS CGGEDI ADHVASYG+N+YQSYGPSG +THEFDGDE+FYV
Sbjct: 1   MILNKALMLGALALTTVMSPCGGEDIVADHVASYGVNLYQSYGPSGQYTHEFDGDEQFYV 60

Query: 437 DLDKKETVWRLPLFSEFTSFDPHGALRNIATLKHNLNIVTKRSNNTAADNQVPEVTVFSK 616
           DL +KETVW LP+  +F  FDP  AL NIA LKHNLN + KRSN+TAA N+VPEVTVFSK
Sbjct: 61  DLGRKETVWCLPVLRQF-RFDPQFALTNIAVLKHNLNSLIKRSNSTAATNEVPEVTVFSK 119

Query: 617 SPLITG 634
           SP+  G
Sbjct: 120 SPVTLG 125



 Score = 58.5 bits (140), Expect(2) = 3e-58
 Identities = 25/30 (83%), Positives = 26/30 (86%)
 Frame = +3

Query: 630 LGQPNTLICHVDNIFPPVINITWLEKGHSV 719
           LGQPN LIC VDNIFPPV+NITWL  GHSV
Sbjct: 124 LGQPNILICLVDNIFPPVVNITWLSNGHSV 153


>ref|XP_941255.1| PREDICTED: similar to HLA class II histocompatibility antigen,
           DQ(3) alpha chain precursor (DC-alpha) (HLA-DCA)
           (HLA-DQA1*05011) (HLA-DQA1*0502) isoform 1 [Homo
           sapiens]
          Length = 254

 Score =  186 bits (472), Expect(2) = 3e-58
 Identities = 91/126 (72%), Positives = 104/126 (82%)
 Frame = +2

Query: 257 MVPGRVLMWGALALTTVMSACGGEDIAADHVASYGLNVYQSYGPSGYFTHEFDGDEEFYV 436
           M+  + LM GALALTTVMS CGGEDI ADHVASYG+N+YQSYGPSG +THEFDGDE+FYV
Sbjct: 1   MILNKALMLGALALTTVMSPCGGEDIVADHVASYGVNLYQSYGPSGQYTHEFDGDEQFYV 60

Query: 437 DLDKKETVWRLPLFSEFTSFDPHGALRNIATLKHNLNIVTKRSNNTAADNQVPEVTVFSK 616
           DL +KETVW LP+  +F  FDP  AL NIA LKHNLN + KRSN+TAA N+VPEVTVFSK
Sbjct: 61  DLGRKETVWCLPVLRQF-RFDPQFALTNIAVLKHNLNSLIKRSNSTAATNEVPEVTVFSK 119

Query: 617 SPLITG 634
           SP+  G
Sbjct: 120 SPVTLG 125



 Score = 58.5 bits (140), Expect(2) = 3e-58
 Identities = 25/30 (83%), Positives = 26/30 (86%)
 Frame = +3

Query: 630 LGQPNTLICHVDNIFPPVINITWLEKGHSV 719
           LGQPN LIC VDNIFPPV+NITWL  GHSV
Sbjct: 124 LGQPNILICLVDNIFPPVVNITWLSNGHSV 153


  Database: RefSeqHP
    Posted date:  Aug 2, 2006 12:57 AM
  Number of letters in database: 17,774,539
  Number of sequences in database:  39,411
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 43,848,320
Number of Sequences: 39411
Number of extensions: 1172653
Number of successful extensions: 3066
Number of sequences better than 1.0e-05: 10
Number of HSP's better than  0.0 without gapping: 2685
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3054
length of database: 17,774,539
effective HSP length: 103
effective length of database: 13,715,206
effective search space used: 3648244796
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

Search to RefSeqMP

BLASTX 2.2.10 [Oct-19-2004]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20060611S-056818
         (1110 letters)

Database: RefSeqMP 
           45,328 sequences; 21,768,885 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_034508.2| histocompatibility 2, class II antigen A, alpha...   164   6e-51
Alignment   gi|NP_032232.1| histocompatibility 2, O region alpha locus [Mus...    99   2e-29
Alignment   gi|NP_034511.2| histocompatibility 2, class II antigen E alpha ...    92   9e-26

>ref|NP_034508.2| histocompatibility 2, class II antigen A, alpha [Mus musculus]
          Length = 256

 Score =  164 bits (415), Expect(2) = 6e-51
 Identities = 79/127 (62%), Positives = 96/127 (75%), Gaps = 1/127 (0%)
 Frame = +2

Query: 257 MVPGRVLMWGALALTTVMSACGGED-IAADHVASYGLNVYQSYGPSGYFTHEFDGDEEFY 433
           M   R L+ G LALTT++S CGGED I ADHV +YG++VYQS G  G +T EFDGDE FY
Sbjct: 1   MPRSRALILGVLALTTMLSLCGGEDDIEADHVGTYGISVYQSPGDIGQYTFEFDGDELFY 60

Query: 434 VDLDKKETVWRLPLFSEFTSFDPHGALRNIATLKHNLNIVTKRSNNTAADNQVPEVTVFS 613
           VDLDKKETVW LP F +  SFDP G L+NIA +KHNL ++TKRSN+T A N+ P+ TVF 
Sbjct: 61  VDLDKKETVWMLPEFGQLASFDPQGGLQNIAVVKHNLGVLTKRSNSTPATNEAPQATVFP 120

Query: 614 KSPLITG 634
           KSP++ G
Sbjct: 121 KSPVLLG 127



 Score = 56.2 bits (134), Expect(2) = 6e-51
 Identities = 25/30 (83%), Positives = 25/30 (83%)
 Frame = +3

Query: 630 LGQPNTLICHVDNIFPPVINITWLEKGHSV 719
           LGQPNTLIC VDNIFPPVINITWL    SV
Sbjct: 126 LGQPNTLICFVDNIFPPVINITWLRNSKSV 155


>ref|NP_032232.1| histocompatibility 2, O region alpha locus [Mus musculus]
          Length = 250

 Score = 99.0 bits (245), Expect(2) = 2e-29
 Identities = 52/115 (45%), Positives = 70/115 (60%)
 Frame = +2

Query: 290 LALTTVMSACGGEDIAADHVASYGLNVYQSYGPSGYFTHEFDGDEEFYVDLDKKETVWRL 469
           L + + +S  G   I ADH+ SYG   YQSY  SG FTHEFDG++ F VDL  +E VWRL
Sbjct: 12  LTVMSFLSPRGVRAIKADHMGSYGPAFYQSYDASGQFTHEFDGEQIFSVDLKNEEVVWRL 71

Query: 470 PLFSEFTSFDPHGALRNIATLKHNLNIVTKRSNNTAADNQVPEVTVFSKSPLITG 634
           P F +F   D    L +I+ +K +L+I+ +RSN T A +  P VTV  K+ +  G
Sbjct: 72  PEFGDFAHSDFQSGLMSISMIKAHLDILVERSNRTRAVSVPPRVTVLPKTRVELG 126



 Score = 49.3 bits (116), Expect(2) = 2e-29
 Identities = 20/32 (62%), Positives = 24/32 (75%)
 Frame = +3

Query: 630 LGQPNTLICHVDNIFPPVINITWLEKGHSVQK 725
           LG+PN LIC VD+IFPPVIN+TWL     + K
Sbjct: 125 LGKPNVLICIVDDIFPPVINVTWLRNSQPITK 156


>ref|NP_034511.2| histocompatibility 2, class II antigen E alpha [Mus musculus]
          Length = 255

 Score = 92.4 bits (228), Expect(2) = 9e-26
 Identities = 44/81 (54%), Positives = 58/81 (71%)
 Frame = +2

Query: 392 GYFTHEFDGDEEFYVDLDKKETVWRLPLFSEFTSFDPHGALRNIATLKHNLNIVTKRSNN 571
           G F  +FDGDE F+VD++K ET+WRL  F++F SF+  GAL NIA  K NL+++ +RSNN
Sbjct: 45  GEFMFDFDGDEIFHVDIEKSETIWRLEEFAKFASFEAQGALANIAVDKANLDVMKERSNN 104

Query: 572 TAADNQVPEVTVFSKSPLITG 634
           T   N  PEVTV S+SP+  G
Sbjct: 105 TPDANVAPEVTVLSRSPVNLG 125



 Score = 43.9 bits (102), Expect(2) = 9e-26
 Identities = 16/30 (53%), Positives = 20/30 (66%)
 Frame = +3

Query: 630 LGQPNTLICHVDNIFPPVINITWLEKGHSV 719
           LG+PN LIC +D   PPV+N+TW   G  V
Sbjct: 124 LGEPNILICFIDKFSPPVVNVTWFRNGRPV 153


  Database: RefSeqMP
    Posted date:  Aug 2, 2006 12:58 AM
  Number of letters in database: 21,768,885
  Number of sequences in database:  45,328
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 51,895,256
Number of Sequences: 45328
Number of extensions: 1338823
Number of successful extensions: 3624
Number of sequences better than 1.0e-05: 3
Number of HSP's better than  0.0 without gapping: 3239
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3622
length of database: 21,768,885
effective HSP length: 105
effective length of database: 17,009,445
effective search space used: 4490493480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)