Search to RefSeqHP
BLASTX 2.2.10 [Oct-19-2004]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20060611S-056818
(1110 letters)
Database: RefSeqHP
39,411 sequences; 17,774,539 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_949974.1| PREDICTED: similar to HLA class II histocompati... 199 9e-63
Alignment gi|XP_949973.1| PREDICTED: similar to HLA class II histocompati... 199 9e-63
Alignment gi|XP_949971.1| PREDICTED: similar to HLA class II histocompati... 199 9e-63
Alignment gi|XP_945969.1| PREDICTED: similar to HLA class II histocompati... 199 9e-63
Alignment gi|XP_949969.1| PREDICTED: similar to HLA class II histocompati... 199 9e-63
Alignment gi|NP_002113.2| major histocompatibility complex, class II, DQ ... 189 7e-59
Alignment gi|XP_941306.1| PREDICTED: similar to HLA class II histocompati... 186 3e-58
Alignment gi|XP_941305.1| PREDICTED: similar to HLA class II histocompati... 186 3e-58
Alignment gi|XP_941304.1| PREDICTED: similar to HLA class II histocompati... 186 3e-58
Alignment gi|XP_941255.1| PREDICTED: similar to HLA class II histocompati... 186 3e-58
>ref|XP_949974.1| PREDICTED: similar to HLA class II histocompatibility antigen,
DQ(1) alpha chain precursor (DC-4 alpha chain) isoform
10 [Homo sapiens]
Length = 255
Score = 199 bits (505), Expect(2) = 9e-63
Identities = 95/126 (75%), Positives = 107/126 (84%)
Frame = +2
Query: 257 MVPGRVLMWGALALTTVMSACGGEDIAADHVASYGLNVYQSYGPSGYFTHEFDGDEEFYV 436
M+ + LM GALALTTVMS CGGEDI ADHVASYG+N+YQSYGPSG ++HEFDGDEEFYV
Sbjct: 1 MILNKALMLGALALTTVMSPCGGEDIVADHVASYGVNLYQSYGPSGQYSHEFDGDEEFYV 60
Query: 437 DLDKKETVWRLPLFSEFTSFDPHGALRNIATLKHNLNIVTKRSNNTAADNQVPEVTVFSK 616
DL++KETVW+LPLF F FDP AL NIA LKHNLNIV KRSN+TAA N+VPEVTVFSK
Sbjct: 61 DLERKETVWQLPLFRRFRRFDPQFALTNIAVLKHNLNIVIKRSNSTAATNEVPEVTVFSK 120
Query: 617 SPLITG 634
SP+ G
Sbjct: 121 SPVTLG 126
Score = 60.8 bits (146), Expect(2) = 9e-63
Identities = 26/30 (86%), Positives = 27/30 (90%)
Frame = +3
Query: 630 LGQPNTLICHVDNIFPPVINITWLEKGHSV 719
LGQPNTLIC VDNIFPPV+NITWL GHSV
Sbjct: 125 LGQPNTLICLVDNIFPPVVNITWLSNGHSV 154
>ref|XP_949973.1| PREDICTED: similar to HLA class II histocompatibility antigen,
DQ(1) alpha chain precursor (DC-4 alpha chain) isoform 9
[Homo sapiens]
Length = 255
Score = 199 bits (505), Expect(2) = 9e-63
Identities = 95/126 (75%), Positives = 107/126 (84%)
Frame = +2
Query: 257 MVPGRVLMWGALALTTVMSACGGEDIAADHVASYGLNVYQSYGPSGYFTHEFDGDEEFYV 436
M+ + LM GALALTTVMS CGGEDI ADHVASYG+N+YQSYGPSG ++HEFDGDEEFYV
Sbjct: 1 MILNKALMLGALALTTVMSPCGGEDIVADHVASYGVNLYQSYGPSGQYSHEFDGDEEFYV 60
Query: 437 DLDKKETVWRLPLFSEFTSFDPHGALRNIATLKHNLNIVTKRSNNTAADNQVPEVTVFSK 616
DL++KETVW+LPLF F FDP AL NIA LKHNLNIV KRSN+TAA N+VPEVTVFSK
Sbjct: 61 DLERKETVWQLPLFRRFRRFDPQFALTNIAVLKHNLNIVIKRSNSTAATNEVPEVTVFSK 120
Query: 617 SPLITG 634
SP+ G
Sbjct: 121 SPVTLG 126
Score = 60.8 bits (146), Expect(2) = 9e-63
Identities = 26/30 (86%), Positives = 27/30 (90%)
Frame = +3
Query: 630 LGQPNTLICHVDNIFPPVINITWLEKGHSV 719
LGQPNTLIC VDNIFPPV+NITWL GHSV
Sbjct: 125 LGQPNTLICLVDNIFPPVVNITWLSNGHSV 154
>ref|XP_949971.1| PREDICTED: similar to HLA class II histocompatibility antigen,
DQ(1) alpha chain precursor (DC-4 alpha chain) isoform 8
[Homo sapiens]
Length = 255
Score = 199 bits (505), Expect(2) = 9e-63
Identities = 95/126 (75%), Positives = 107/126 (84%)
Frame = +2
Query: 257 MVPGRVLMWGALALTTVMSACGGEDIAADHVASYGLNVYQSYGPSGYFTHEFDGDEEFYV 436
M+ + LM GALALTTVMS CGGEDI ADHVASYG+N+YQSYGPSG ++HEFDGDEEFYV
Sbjct: 1 MILNKALMLGALALTTVMSPCGGEDIVADHVASYGVNLYQSYGPSGQYSHEFDGDEEFYV 60
Query: 437 DLDKKETVWRLPLFSEFTSFDPHGALRNIATLKHNLNIVTKRSNNTAADNQVPEVTVFSK 616
DL++KETVW+LPLF F FDP AL NIA LKHNLNIV KRSN+TAA N+VPEVTVFSK
Sbjct: 61 DLERKETVWQLPLFRRFRRFDPQFALTNIAVLKHNLNIVIKRSNSTAATNEVPEVTVFSK 120
Query: 617 SPLITG 634
SP+ G
Sbjct: 121 SPVTLG 126
Score = 60.8 bits (146), Expect(2) = 9e-63
Identities = 26/30 (86%), Positives = 27/30 (90%)
Frame = +3
Query: 630 LGQPNTLICHVDNIFPPVINITWLEKGHSV 719
LGQPNTLIC VDNIFPPV+NITWL GHSV
Sbjct: 125 LGQPNTLICLVDNIFPPVVNITWLSNGHSV 154
>ref|XP_945969.1| PREDICTED: similar to HLA class II histocompatibility antigen,
DQ(1) alpha chain precursor (DC-4 alpha chain) isoform 1
[Homo sapiens]
Length = 255
Score = 199 bits (505), Expect(2) = 9e-63
Identities = 95/126 (75%), Positives = 107/126 (84%)
Frame = +2
Query: 257 MVPGRVLMWGALALTTVMSACGGEDIAADHVASYGLNVYQSYGPSGYFTHEFDGDEEFYV 436
M+ + LM GALALTTVMS CGGEDI ADHVASYG+N+YQSYGPSG ++HEFDGDEEFYV
Sbjct: 1 MILNKALMLGALALTTVMSPCGGEDIVADHVASYGVNLYQSYGPSGQYSHEFDGDEEFYV 60
Query: 437 DLDKKETVWRLPLFSEFTSFDPHGALRNIATLKHNLNIVTKRSNNTAADNQVPEVTVFSK 616
DL++KETVW+LPLF F FDP AL NIA LKHNLNIV KRSN+TAA N+VPEVTVFSK
Sbjct: 61 DLERKETVWQLPLFRRFRRFDPQFALTNIAVLKHNLNIVIKRSNSTAATNEVPEVTVFSK 120
Query: 617 SPLITG 634
SP+ G
Sbjct: 121 SPVTLG 126
Score = 60.8 bits (146), Expect(2) = 9e-63
Identities = 26/30 (86%), Positives = 27/30 (90%)
Frame = +3
Query: 630 LGQPNTLICHVDNIFPPVINITWLEKGHSV 719
LGQPNTLIC VDNIFPPV+NITWL GHSV
Sbjct: 125 LGQPNTLICLVDNIFPPVVNITWLSNGHSV 154
>ref|XP_949969.1| PREDICTED: similar to HLA class II histocompatibility antigen,
DQ(1) alpha chain precursor (DC-4 alpha chain) isoform 7
[Homo sapiens]
Length = 208
Score = 199 bits (505), Expect(2) = 9e-63
Identities = 95/126 (75%), Positives = 107/126 (84%)
Frame = +2
Query: 257 MVPGRVLMWGALALTTVMSACGGEDIAADHVASYGLNVYQSYGPSGYFTHEFDGDEEFYV 436
M+ + LM GALALTTVMS CGGEDI ADHVASYG+N+YQSYGPSG ++HEFDGDEEFYV
Sbjct: 1 MILNKALMLGALALTTVMSPCGGEDIVADHVASYGVNLYQSYGPSGQYSHEFDGDEEFYV 60
Query: 437 DLDKKETVWRLPLFSEFTSFDPHGALRNIATLKHNLNIVTKRSNNTAADNQVPEVTVFSK 616
DL++KETVW+LPLF F FDP AL NIA LKHNLNIV KRSN+TAA N+VPEVTVFSK
Sbjct: 61 DLERKETVWQLPLFRRFRRFDPQFALTNIAVLKHNLNIVIKRSNSTAATNEVPEVTVFSK 120
Query: 617 SPLITG 634
SP+ G
Sbjct: 121 SPVTLG 126
Score = 60.8 bits (146), Expect(2) = 9e-63
Identities = 26/30 (86%), Positives = 27/30 (90%)
Frame = +3
Query: 630 LGQPNTLICHVDNIFPPVINITWLEKGHSV 719
LGQPNTLIC VDNIFPPV+NITWL GHSV
Sbjct: 125 LGQPNTLICLVDNIFPPVVNITWLSNGHSV 154
>ref|NP_002113.2| major histocompatibility complex, class II, DQ alpha 1 precursor
[Homo sapiens]
Length = 255
Score = 189 bits (479), Expect(2) = 7e-59
Identities = 89/126 (70%), Positives = 104/126 (82%)
Frame = +2
Query: 257 MVPGRVLMWGALALTTVMSACGGEDIAADHVASYGLNVYQSYGPSGYFTHEFDGDEEFYV 436
M+ + L+ GALALTTVMS CGGEDI ADHVAS G+N+YQ YGPSG +THEFDGDE+FYV
Sbjct: 1 MILNKALLLGALALTTVMSPCGGEDIVADHVASCGVNLYQFYGPSGQYTHEFDGDEQFYV 60
Query: 437 DLDKKETVWRLPLFSEFTSFDPHGALRNIATLKHNLNIVTKRSNNTAADNQVPEVTVFSK 616
DL++KET WR P FS+F FDP GALRN+A KHNLNI+ KR N+TAA N+VPEVTVFSK
Sbjct: 61 DLERKETAWRWPEFSKFGGFDPQGALRNMAVAKHNLNIMIKRYNSTAATNEVPEVTVFSK 120
Query: 617 SPLITG 634
SP+ G
Sbjct: 121 SPVTLG 126
Score = 57.8 bits (138), Expect(2) = 7e-59
Identities = 25/30 (83%), Positives = 26/30 (86%)
Frame = +3
Query: 630 LGQPNTLICHVDNIFPPVINITWLEKGHSV 719
LGQPNTLIC VDNIFPPV+NITWL G SV
Sbjct: 125 LGQPNTLICLVDNIFPPVVNITWLSNGQSV 154
>ref|XP_941306.1| PREDICTED: similar to HLA class II histocompatibility antigen,
DQ(3) alpha chain precursor (DC-alpha) (HLA-DCA)
(HLA-DQA1*05011) (HLA-DQA1*0502) isoform 10 [Homo
sapiens]
Length = 254
Score = 186 bits (472), Expect(2) = 3e-58
Identities = 91/126 (72%), Positives = 104/126 (82%)
Frame = +2
Query: 257 MVPGRVLMWGALALTTVMSACGGEDIAADHVASYGLNVYQSYGPSGYFTHEFDGDEEFYV 436
M+ + LM GALALTTVMS CGGEDI ADHVASYG+N+YQSYGPSG +THEFDGDE+FYV
Sbjct: 1 MILNKALMLGALALTTVMSPCGGEDIVADHVASYGVNLYQSYGPSGQYTHEFDGDEQFYV 60
Query: 437 DLDKKETVWRLPLFSEFTSFDPHGALRNIATLKHNLNIVTKRSNNTAADNQVPEVTVFSK 616
DL +KETVW LP+ +F FDP AL NIA LKHNLN + KRSN+TAA N+VPEVTVFSK
Sbjct: 61 DLGRKETVWCLPVLRQF-RFDPQFALTNIAVLKHNLNSLIKRSNSTAATNEVPEVTVFSK 119
Query: 617 SPLITG 634
SP+ G
Sbjct: 120 SPVTLG 125
Score = 58.5 bits (140), Expect(2) = 3e-58
Identities = 25/30 (83%), Positives = 26/30 (86%)
Frame = +3
Query: 630 LGQPNTLICHVDNIFPPVINITWLEKGHSV 719
LGQPN LIC VDNIFPPV+NITWL GHSV
Sbjct: 124 LGQPNILICLVDNIFPPVVNITWLSNGHSV 153
>ref|XP_941305.1| PREDICTED: similar to HLA class II histocompatibility antigen,
DQ(3) alpha chain precursor (DC-alpha) (HLA-DCA)
(HLA-DQA1*05011) (HLA-DQA1*0502) isoform 9 [Homo
sapiens]
Length = 254
Score = 186 bits (472), Expect(2) = 3e-58
Identities = 91/126 (72%), Positives = 104/126 (82%)
Frame = +2
Query: 257 MVPGRVLMWGALALTTVMSACGGEDIAADHVASYGLNVYQSYGPSGYFTHEFDGDEEFYV 436
M+ + LM GALALTTVMS CGGEDI ADHVASYG+N+YQSYGPSG +THEFDGDE+FYV
Sbjct: 1 MILNKALMLGALALTTVMSPCGGEDIVADHVASYGVNLYQSYGPSGQYTHEFDGDEQFYV 60
Query: 437 DLDKKETVWRLPLFSEFTSFDPHGALRNIATLKHNLNIVTKRSNNTAADNQVPEVTVFSK 616
DL +KETVW LP+ +F FDP AL NIA LKHNLN + KRSN+TAA N+VPEVTVFSK
Sbjct: 61 DLGRKETVWCLPVLRQF-RFDPQFALTNIAVLKHNLNSLIKRSNSTAATNEVPEVTVFSK 119
Query: 617 SPLITG 634
SP+ G
Sbjct: 120 SPVTLG 125
Score = 58.5 bits (140), Expect(2) = 3e-58
Identities = 25/30 (83%), Positives = 26/30 (86%)
Frame = +3
Query: 630 LGQPNTLICHVDNIFPPVINITWLEKGHSV 719
LGQPN LIC VDNIFPPV+NITWL GHSV
Sbjct: 124 LGQPNILICLVDNIFPPVVNITWLSNGHSV 153
>ref|XP_941304.1| PREDICTED: similar to HLA class II histocompatibility antigen,
DQ(3) alpha chain precursor (DC-alpha) (HLA-DCA)
(HLA-DQA1*05011) (HLA-DQA1*0502) isoform 8 [Homo
sapiens]
Length = 254
Score = 186 bits (472), Expect(2) = 3e-58
Identities = 91/126 (72%), Positives = 104/126 (82%)
Frame = +2
Query: 257 MVPGRVLMWGALALTTVMSACGGEDIAADHVASYGLNVYQSYGPSGYFTHEFDGDEEFYV 436
M+ + LM GALALTTVMS CGGEDI ADHVASYG+N+YQSYGPSG +THEFDGDE+FYV
Sbjct: 1 MILNKALMLGALALTTVMSPCGGEDIVADHVASYGVNLYQSYGPSGQYTHEFDGDEQFYV 60
Query: 437 DLDKKETVWRLPLFSEFTSFDPHGALRNIATLKHNLNIVTKRSNNTAADNQVPEVTVFSK 616
DL +KETVW LP+ +F FDP AL NIA LKHNLN + KRSN+TAA N+VPEVTVFSK
Sbjct: 61 DLGRKETVWCLPVLRQF-RFDPQFALTNIAVLKHNLNSLIKRSNSTAATNEVPEVTVFSK 119
Query: 617 SPLITG 634
SP+ G
Sbjct: 120 SPVTLG 125
Score = 58.5 bits (140), Expect(2) = 3e-58
Identities = 25/30 (83%), Positives = 26/30 (86%)
Frame = +3
Query: 630 LGQPNTLICHVDNIFPPVINITWLEKGHSV 719
LGQPN LIC VDNIFPPV+NITWL GHSV
Sbjct: 124 LGQPNILICLVDNIFPPVVNITWLSNGHSV 153
>ref|XP_941255.1| PREDICTED: similar to HLA class II histocompatibility antigen,
DQ(3) alpha chain precursor (DC-alpha) (HLA-DCA)
(HLA-DQA1*05011) (HLA-DQA1*0502) isoform 1 [Homo
sapiens]
Length = 254
Score = 186 bits (472), Expect(2) = 3e-58
Identities = 91/126 (72%), Positives = 104/126 (82%)
Frame = +2
Query: 257 MVPGRVLMWGALALTTVMSACGGEDIAADHVASYGLNVYQSYGPSGYFTHEFDGDEEFYV 436
M+ + LM GALALTTVMS CGGEDI ADHVASYG+N+YQSYGPSG +THEFDGDE+FYV
Sbjct: 1 MILNKALMLGALALTTVMSPCGGEDIVADHVASYGVNLYQSYGPSGQYTHEFDGDEQFYV 60
Query: 437 DLDKKETVWRLPLFSEFTSFDPHGALRNIATLKHNLNIVTKRSNNTAADNQVPEVTVFSK 616
DL +KETVW LP+ +F FDP AL NIA LKHNLN + KRSN+TAA N+VPEVTVFSK
Sbjct: 61 DLGRKETVWCLPVLRQF-RFDPQFALTNIAVLKHNLNSLIKRSNSTAATNEVPEVTVFSK 119
Query: 617 SPLITG 634
SP+ G
Sbjct: 120 SPVTLG 125
Score = 58.5 bits (140), Expect(2) = 3e-58
Identities = 25/30 (83%), Positives = 26/30 (86%)
Frame = +3
Query: 630 LGQPNTLICHVDNIFPPVINITWLEKGHSV 719
LGQPN LIC VDNIFPPV+NITWL GHSV
Sbjct: 124 LGQPNILICLVDNIFPPVVNITWLSNGHSV 153
Database: RefSeqHP
Posted date: Aug 2, 2006 12:57 AM
Number of letters in database: 17,774,539
Number of sequences in database: 39,411
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 43,848,320
Number of Sequences: 39411
Number of extensions: 1172653
Number of successful extensions: 3066
Number of sequences better than 1.0e-05: 10
Number of HSP's better than 0.0 without gapping: 2685
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3054
length of database: 17,774,539
effective HSP length: 103
effective length of database: 13,715,206
effective search space used: 3648244796
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
Search to RefSeqMP
BLASTX 2.2.10 [Oct-19-2004]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20060611S-056818
(1110 letters)
Database: RefSeqMP
45,328 sequences; 21,768,885 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_034508.2| histocompatibility 2, class II antigen A, alpha... 164 6e-51
Alignment gi|NP_032232.1| histocompatibility 2, O region alpha locus [Mus... 99 2e-29
Alignment gi|NP_034511.2| histocompatibility 2, class II antigen E alpha ... 92 9e-26
>ref|NP_034508.2| histocompatibility 2, class II antigen A, alpha [Mus musculus]
Length = 256
Score = 164 bits (415), Expect(2) = 6e-51
Identities = 79/127 (62%), Positives = 96/127 (75%), Gaps = 1/127 (0%)
Frame = +2
Query: 257 MVPGRVLMWGALALTTVMSACGGED-IAADHVASYGLNVYQSYGPSGYFTHEFDGDEEFY 433
M R L+ G LALTT++S CGGED I ADHV +YG++VYQS G G +T EFDGDE FY
Sbjct: 1 MPRSRALILGVLALTTMLSLCGGEDDIEADHVGTYGISVYQSPGDIGQYTFEFDGDELFY 60
Query: 434 VDLDKKETVWRLPLFSEFTSFDPHGALRNIATLKHNLNIVTKRSNNTAADNQVPEVTVFS 613
VDLDKKETVW LP F + SFDP G L+NIA +KHNL ++TKRSN+T A N+ P+ TVF
Sbjct: 61 VDLDKKETVWMLPEFGQLASFDPQGGLQNIAVVKHNLGVLTKRSNSTPATNEAPQATVFP 120
Query: 614 KSPLITG 634
KSP++ G
Sbjct: 121 KSPVLLG 127
Score = 56.2 bits (134), Expect(2) = 6e-51
Identities = 25/30 (83%), Positives = 25/30 (83%)
Frame = +3
Query: 630 LGQPNTLICHVDNIFPPVINITWLEKGHSV 719
LGQPNTLIC VDNIFPPVINITWL SV
Sbjct: 126 LGQPNTLICFVDNIFPPVINITWLRNSKSV 155
>ref|NP_032232.1| histocompatibility 2, O region alpha locus [Mus musculus]
Length = 250
Score = 99.0 bits (245), Expect(2) = 2e-29
Identities = 52/115 (45%), Positives = 70/115 (60%)
Frame = +2
Query: 290 LALTTVMSACGGEDIAADHVASYGLNVYQSYGPSGYFTHEFDGDEEFYVDLDKKETVWRL 469
L + + +S G I ADH+ SYG YQSY SG FTHEFDG++ F VDL +E VWRL
Sbjct: 12 LTVMSFLSPRGVRAIKADHMGSYGPAFYQSYDASGQFTHEFDGEQIFSVDLKNEEVVWRL 71
Query: 470 PLFSEFTSFDPHGALRNIATLKHNLNIVTKRSNNTAADNQVPEVTVFSKSPLITG 634
P F +F D L +I+ +K +L+I+ +RSN T A + P VTV K+ + G
Sbjct: 72 PEFGDFAHSDFQSGLMSISMIKAHLDILVERSNRTRAVSVPPRVTVLPKTRVELG 126
Score = 49.3 bits (116), Expect(2) = 2e-29
Identities = 20/32 (62%), Positives = 24/32 (75%)
Frame = +3
Query: 630 LGQPNTLICHVDNIFPPVINITWLEKGHSVQK 725
LG+PN LIC VD+IFPPVIN+TWL + K
Sbjct: 125 LGKPNVLICIVDDIFPPVINVTWLRNSQPITK 156
>ref|NP_034511.2| histocompatibility 2, class II antigen E alpha [Mus musculus]
Length = 255
Score = 92.4 bits (228), Expect(2) = 9e-26
Identities = 44/81 (54%), Positives = 58/81 (71%)
Frame = +2
Query: 392 GYFTHEFDGDEEFYVDLDKKETVWRLPLFSEFTSFDPHGALRNIATLKHNLNIVTKRSNN 571
G F +FDGDE F+VD++K ET+WRL F++F SF+ GAL NIA K NL+++ +RSNN
Sbjct: 45 GEFMFDFDGDEIFHVDIEKSETIWRLEEFAKFASFEAQGALANIAVDKANLDVMKERSNN 104
Query: 572 TAADNQVPEVTVFSKSPLITG 634
T N PEVTV S+SP+ G
Sbjct: 105 TPDANVAPEVTVLSRSPVNLG 125
Score = 43.9 bits (102), Expect(2) = 9e-26
Identities = 16/30 (53%), Positives = 20/30 (66%)
Frame = +3
Query: 630 LGQPNTLICHVDNIFPPVINITWLEKGHSV 719
LG+PN LIC +D PPV+N+TW G V
Sbjct: 124 LGEPNILICFIDKFSPPVVNVTWFRNGRPV 153
Database: RefSeqMP
Posted date: Aug 2, 2006 12:58 AM
Number of letters in database: 21,768,885
Number of sequences in database: 45,328
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 51,895,256
Number of Sequences: 45328
Number of extensions: 1338823
Number of successful extensions: 3624
Number of sequences better than 1.0e-05: 3
Number of HSP's better than 0.0 without gapping: 3239
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3622
length of database: 21,768,885
effective HSP length: 105
effective length of database: 17,009,445
effective search space used: 4490493480
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)