BLASTX 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= 20060611S-057267 (1242 letters) Database: RefSeqSP 1040 sequences; 434,620 total letters Searching...done ***** No hits found ****** Database: RefSeqSP Posted date: Aug 1, 2006 7:14 PM Number of letters in database: 434,620 Number of sequences in database: 1040 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 1,214,983 Number of Sequences: 1040 Number of extensions: 31509 Number of successful extensions: 70 Number of sequences better than 1.0e-05: 0 Number of HSP's better than 0.0 without gapping: 65 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 70 length of database: 434,620 effective HSP length: 79 effective length of database: 352,460 effective search space used: 117721640 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
Search to RefSeqBP
BLASTX 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= 20060611S-057267 (1242 letters) Database: RefSeqBP 33,508 sequences; 16,112,626 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Alignment gi|XP_612082.2| PREDICTED: similar to LanC-like protein 1 (40 k... 256 2e-76 Alignment gi|XP_614740.2| PREDICTED: similar to LanC-like protein 2 (Test... 130 3e-37 >ref|XP_612082.2| PREDICTED: similar to LanC-like protein 1 (40 kDa erythrocyte membrane protein) (p40) [Bos taurus] Length = 399 Score = 256 bits (655), Expect(2) = 2e-76 Identities = 144/269 (53%), Positives = 170/269 (63%), Gaps = 2/269 (0%) Frame = +1 Query: 25 MAHMAFPNAYVYCITSLPQSYFNSAAQAQSRDIATTRTLRSQTFFTKRRVGLQSSNPPYG 204 MA AFPN Y SL + YF+SA + + + + + + + GL+S++P Sbjct: 1 MAQRAFPNPYADYNKSLAEGYFDSAGRL-TPEFSQRLNNKIRELLQQMERGLKSADPRDS 59 Query: 205 TCLPCMGKYXXXXXXXXXXXXXXXXXXXWPMAKQ--RQSPNCLTNRSITFLCGDAGPLPM 378 T + MA +QS N L+ SITFLCGD GPL + Sbjct: 60 TVYT---GWAGIAVLYLHLYDVFGDPNYLQMAHGYVKQSLNSLSKHSITFLCGDGGPLAV 116 Query: 379 AAVVHDPMNNAKQAEHCIARLIHLNKIDPHAPNEMLYGRMGYIYALPFVNMNFGVQKIPR 558 AAVVH MNN KQAE CI RLIHLNKIDPHAP+EMLYGRMGYI AL FVN NFG +KIP+ Sbjct: 117 AAVVHHKMNNEKQAEECITRLIHLNKIDPHAPSEMLYGRMGYISALLFVNKNFGEEKIPQ 176 Query: 559 SHIQHICETVLTSGENLARTIHFTE*TPLMYEWYL**YVGAAHGLSRIYYYLMQTILSMN 738 SHIQ ICETVLTSGE+LAR FT TPLMYEWY YVGAAHGL+ IYYYLMQ L ++ Sbjct: 177 SHIQQICETVLTSGEDLARKRRFTGKTPLMYEWYQEYYVGAAHGLAGIYYYLMQPSLQVS 236 Query: 739 HAKFQSLVKPNADYVCQLKFPSR*LPSLI 825 HAK +LVKP+ DYVCQLKFPS P + Sbjct: 237 HAKLHNLVKPSVDYVCQLKFPSGNYPPCV 265 Score = 48.5 bits (114), Expect(2) = 2e-76 Identities = 26/60 (43%), Positives = 37/60 (61%) Frame = +2 Query: 809 NYPP*LEQPQKLLIHWCHSSPGVIQLSLPAY*GVHMKKGISLYAYQCGLILF*KSGLSKK 988 NYPP ++ + LLIHWCH +PGVI + AY V ++ AYQC +++ + GL KK Sbjct: 260 NYPPCVDDSRDLLIHWCHGAPGVIYMLTQAY-KVFKEERYLNDAYQCADVIW-QYGLLKK 317 >ref|XP_614740.2| PREDICTED: similar to LanC-like protein 2 (Testis-specific adriamycin sensitivity protein), partial [Bos taurus] Length = 331 Score = 130 bits (327), Expect(3) = 3e-37 Identities = 66/169 (39%), Positives = 100/169 (59%), Gaps = 4/169 (2%) Frame = +1 Query: 325 LTNRSITFLCGDAGPLPMAAVVHDPMNNAKQAEHCIARLIHLNKI----DPHAPNEMLYG 492 L R +TFLCGDAGPL + AVV+ + + +++ CI +L+ L + D P+E+LYG Sbjct: 135 LNGRRVTFLCGDAGPLAVGAVVYHKLKSDCESQECITKLLQLQRTIVCRDSDLPDELLYG 194 Query: 493 RMGYIYALPFVNMNFGVQKIPRSHIQHICETVLTSGENLARTIHFTE*TPLMYEWYL**Y 672 R GY+YAL +VN G + S I+ + ++ SG+ L++ E PL+Y+W+ Y Sbjct: 195 RAGYLYALLYVNTEIGPGAVCESAIKEVVNAIIESGKALSKEEKKVERCPLLYQWHRKQY 254 Query: 673 VGAAHGLSRIYYYLMQTILSMNHAKFQSLVKPNADYVCQLKFPSR*LPS 819 VGAAHG++ IYY LMQ ++ +VKP+ DY+ +F S PS Sbjct: 255 VGAAHGMAGIYYMLMQPAAKVDQETLTEMVKPSIDYMRHKRFRSGNYPS 303 Score = 37.4 bits (85), Expect(3) = 3e-37 Identities = 14/31 (45%), Positives = 19/31 (61%) Frame = +2 Query: 809 NYPP*LEQPQKLLIHWCHSSPGVIQLSLPAY 901 NYP L L+HWCH +PGVI + + A+ Sbjct: 300 NYPSSLSNETDRLVHWCHGAPGVIHVLMQAH 330 Score = 26.9 bits (58), Expect(3) = 3e-37 Identities = 10/16 (62%), Positives = 12/16 (75%) Frame = +2 Query: 209 AYPAWASIAVLYVQLY 256 AY W IA+LY+QLY Sbjct: 97 AYTGWTGIALLYLQLY 112 Database: RefSeqBP Posted date: Aug 1, 2006 7:14 PM Number of letters in database: 16,112,626 Number of sequences in database: 33,508 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 44,164,071 Number of Sequences: 33508 Number of extensions: 1143623 Number of successful extensions: 2447 Number of sequences better than 1.0e-05: 2 Number of HSP's better than 0.0 without gapping: 2266 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2446 length of database: 16,112,626 effective HSP length: 104 effective length of database: 12,627,794 effective search space used: 3901988346 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
Search to RefSeqCP
BLASTX 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= 20060611S-057267 (1242 letters) Database: RefSeqCP 33,732 sequences; 19,266,565 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Alignment gi|XP_536055.1| PREDICTED: similar to LanC-like protein 1 (40 k... 256 2e-75 Alignment gi|XP_540359.2| PREDICTED: similar to LanC-like protein 2 (Test... 131 5e-38 Alignment gi|XP_548943.2| PREDICTED: similar to LanC lantibiotic syntheta... 50 4e-06 >ref|XP_536055.1| PREDICTED: similar to LanC-like protein 1 (40 kDa erythrocyte membrane protein) (p40) [Canis familiaris] Length = 399 Score = 256 bits (653), Expect(2) = 2e-75 Identities = 143/269 (53%), Positives = 170/269 (63%), Gaps = 2/269 (0%) Frame = +1 Query: 25 MAHMAFPNAYVYCITSLPQSYFNSAAQAQSRDIATTRTLRSQTFFTKRRVGLQSSNPPYG 204 MA AFPN Y SL +SYF+ A + + + + + + + GL+S++P Sbjct: 1 MAQRAFPNPYADFNKSLAESYFDCAGRL-TPEFSQRLNNKIRELLQQMERGLKSADPRDS 59 Query: 205 TCLPCMGKYXXXXXXXXXXXXXXXXXXXWPMAKQ--RQSPNCLTNRSITFLCGDAGPLPM 378 T + MA +QS N LT RSITFLCGDAGPL + Sbjct: 60 TVYT---GWAGIALLYLHLYDVFGDPAYLQMAHGYVKQSLNSLTKRSITFLCGDAGPLAI 116 Query: 379 AAVVHDPMNNAKQAEHCIARLIHLNKIDPHAPNEMLYGRMGYIYALPFVNMNFGVQKIPR 558 AVV+ MNN KQAE CI RLIHLNKID HAPNEMLYGRMGY+YAL FVN NFGV+KIP+ Sbjct: 117 GAVVYHKMNNEKQAEDCITRLIHLNKIDHHAPNEMLYGRMGYVYALLFVNKNFGVEKIPQ 176 Query: 559 SHIQHICETVLTSGENLARTIHFTE*TPLMYEWYL**YVGAAHGLSRIYYYLMQTILSMN 738 SHIQ ICE VLTSGENLA+ +FT TPLMYEWY YVGAAHGL+ IYY LMQ L ++ Sbjct: 177 SHIQQICEAVLTSGENLAQKRNFTAKTPLMYEWYQEYYVGAAHGLAGIYYLLMQPSLQVS 236 Query: 739 HAKFQSLVKPNADYVCQLKFPSR*LPSLI 825 H K +LVKP+ DYVCQLKFPS P + Sbjct: 237 HVKLHNLVKPSVDYVCQLKFPSGNYPPCV 265 Score = 46.6 bits (109), Expect(2) = 2e-75 Identities = 23/60 (38%), Positives = 38/60 (63%) Frame = +2 Query: 809 NYPP*LEQPQKLLIHWCHSSPGVIQLSLPAY*GVHMKKGISLYAYQCGLILF*KSGLSKK 988 NYPP ++ + LL+HWCH SPGVI + + AY + ++ A+QC +++ + GL +K Sbjct: 260 NYPPCVDDNRDLLVHWCHGSPGVIYMLIQAYKAFRGEHYLN-DAHQCADVIW-RYGLLRK 317 >ref|XP_540359.2| PREDICTED: similar to LanC-like protein 2 (Testis-specific adriamycin sensitivity protein) [Canis familiaris] Length = 452 Score = 131 bits (329), Expect(3) = 5e-38 Identities = 67/169 (39%), Positives = 100/169 (59%), Gaps = 4/169 (2%) Frame = +1 Query: 325 LTNRSITFLCGDAGPLPMAAVVHDPMNNAKQAEHCIARLIHLNKI----DPHAPNEMLYG 492 L R +TFLCGDAGPL + AVV+ + + +++ CI +L+ L + D P+E+LYG Sbjct: 139 LNGRRVTFLCGDAGPLAVGAVVYHKLKSDCESQECITKLLQLQRTIVCRDSDLPDELLYG 198 Query: 493 RMGYIYALPFVNMNFGVQKIPRSHIQHICETVLTSGENLARTIHFTE*TPLMYEWYL**Y 672 R GY+YAL ++N G + S I+ + ++ SG+ L+R E PL+Y+W+ Y Sbjct: 199 RAGYLYALLYLNTEIGPGTVCESAIKEVVCAIIESGKTLSREERKAERCPLLYQWHRKQY 258 Query: 673 VGAAHGLSRIYYYLMQTILSMNHAKFQSLVKPNADYVCQLKFPSR*LPS 819 VGAAHG++ IYY LMQ ++ +VKP+ DYV +F S PS Sbjct: 259 VGAAHGMAGIYYMLMQPAAKVDQETLTEMVKPSIDYVRHKRFRSGNYPS 307 Score = 39.7 bits (91), Expect(3) = 5e-38 Identities = 15/31 (48%), Positives = 19/31 (61%) Frame = +2 Query: 809 NYPP*LEQPQKLLIHWCHSSPGVIQLSLPAY 901 NYP L L+HWCH +PGVI + + AY Sbjct: 304 NYPSSLSNETDRLVHWCHGAPGVIHMLMQAY 334 Score = 26.9 bits (58), Expect(3) = 5e-38 Identities = 10/16 (62%), Positives = 12/16 (75%) Frame = +2 Query: 209 AYPAWASIAVLYVQLY 256 AY W IA+LY+QLY Sbjct: 101 AYTGWTGIALLYLQLY 116 >ref|XP_548943.2| PREDICTED: similar to LanC lantibiotic synthetase component C-like 3 [Canis familiaris] Length = 420 Score = 50.4 bits (119), Expect = 4e-06 Identities = 43/156 (27%), Positives = 73/156 (46%), Gaps = 8/156 (5%) Frame = +1 Query: 346 FLCGDAGPLPMAAVVHDPMNNAKQAE-----HCIARLIHLNKIDPHAPNEMLYGRMGYIY 510 FL G AG +A +V+ + + + + + +E+ GR GY+ Sbjct: 120 FLLGGAGVYAVATLVYHALGRSDYVQPLGKFRALCAVCAPVSFLECGSDELFVGRAGYLC 179 Query: 511 ALPFVNMNFGVQKIPRSHIQHICETVLTSGENLARTIHFTE*TPLMYEWYL**YVGAAHG 690 A + + + + I+ IC+ +L SG+ A + + PLMY +Y Y+GAAHG Sbjct: 180 AALVLKQKLAQEVLTPAQIKSICQAILDSGKQYA--MKKRKPFPLMYSYYGTEYLGAAHG 237 Query: 691 LSRIYYYLMQTILSMN-HAK--FQSLVKPNADYVCQ 789 LS I +Q +LS + H K Q LV + D++ + Sbjct: 238 LSSI----LQMLLSYHEHLKPSDQELVWQSVDFLME 269 Database: RefSeqCP Posted date: Aug 1, 2006 9:25 PM Number of letters in database: 19,266,565 Number of sequences in database: 33,732 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 51,827,983 Number of Sequences: 33732 Number of extensions: 1334050 Number of successful extensions: 2726 Number of sequences better than 1.0e-05: 3 Number of HSP's better than 0.0 without gapping: 2512 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2724 length of database: 19,266,565 effective HSP length: 105 effective length of database: 15,724,705 effective search space used: 4843209140 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
Search to RefSeqHP
BLASTX 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= 20060611S-057267 (1242 letters) Database: RefSeqHP 39,411 sequences; 17,774,539 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Alignment gi|NP_006046.1| lanthionine synthetase C-like protein 1 [Homo s... 269 4e-80 Alignment gi|NP_061167.1| LanC lantibiotic synthetase component C-like 2 ... 133 1e-38 Alignment gi|NP_940913.1| LanC lantibiotic synthetase component C-like 3 ... 51 2e-06 >ref|NP_006046.1| lanthionine synthetase C-like protein 1 [Homo sapiens] Length = 399 Score = 269 bits (688), Expect(2) = 4e-80 Identities = 147/268 (54%), Positives = 174/268 (64%) Frame = +1 Query: 25 MAHMAFPNAYVYCITSLPQSYFNSAAQAQSRDIATTRTLRSQTFFTKRRVGLQSSNPPYG 204 MA AFPN Y SL + YF++A + + + + T + + + GL+S++P G Sbjct: 1 MAQRAFPNPYADYNKSLAEGYFDAAGRL-TPEFSQRLTNKIRELLQQMERGLKSADPRDG 59 Query: 205 TCLPCMGKYXXXXXXXXXXXXXXXXXXXWPMAKQRQSPNCLTNRSITFLCGDAGPLPMAA 384 T +QS NCLT RSITFLCGDAGPL +AA Sbjct: 60 TGYTGWAGIAVLYLHLYDVFGDPAYLQL-AHGYVKQSLNCLTKRSITFLCGDAGPLAVAA 118 Query: 385 VVHDPMNNAKQAEHCIARLIHLNKIDPHAPNEMLYGRMGYIYALPFVNMNFGVQKIPRSH 564 V++ MNN KQAE CI RLIHLNKIDPHAPNEMLYGR+GYIYAL FVN NFGV+KIP+SH Sbjct: 119 VLYHKMNNEKQAEDCITRLIHLNKIDPHAPNEMLYGRIGYIYALLFVNKNFGVEKIPQSH 178 Query: 565 IQHICETVLTSGENLARTIHFTE*TPLMYEWYL**YVGAAHGLSRIYYYLMQTILSMNHA 744 IQ ICET+LTSGENLAR +FT +PLMYEWY YVGAAHGL+ IYYYLMQ L ++ Sbjct: 179 IQQICETILTSGENLARKRNFTAKSPLMYEWYQEYYVGAAHGLAGIYYYLMQPSLQVSQG 238 Query: 745 KFQSLVKPNADYVCQLKFPSR*LPSLIG 828 K SLVKP+ DYVCQLKFPS P IG Sbjct: 239 KLHSLVKPSVDYVCQLKFPSGNYPPCIG 266 Score = 48.5 bits (114), Expect(2) = 4e-80 Identities = 25/60 (41%), Positives = 37/60 (61%) Frame = +2 Query: 809 NYPP*LEQPQKLLIHWCHSSPGVIQLSLPAY*GVHMKKGISLYAYQCGLILF*KSGLSKK 988 NYPP + + LL+HWCH +PGVI + + AY V ++ AYQC +++ + GL KK Sbjct: 260 NYPPCIGDNRDLLVHWCHGAPGVIYMLIQAY-KVFREEKYLCDAYQCADVIW-QYGLLKK 317 >ref|NP_061167.1| LanC lantibiotic synthetase component C-like 2 [Homo sapiens] Length = 450 Score = 133 bits (334), Expect(3) = 1e-38 Identities = 66/169 (39%), Positives = 101/169 (59%), Gaps = 4/169 (2%) Frame = +1 Query: 325 LTNRSITFLCGDAGPLPMAAVVHDPMNNAKQAEHCIARLIHLNKI----DPHAPNEMLYG 492 L R +TFLCGDAGPL + AV++ + + +++ C+ +L+ L + + P+E+LYG Sbjct: 140 LNGRRVTFLCGDAGPLAVGAVIYHKLRSDCESQECVTKLLQLQRSVVCQESDLPDELLYG 199 Query: 493 RMGYIYALPFVNMNFGVQKIPRSHIQHICETVLTSGENLARTIHFTE*TPLMYEWYL**Y 672 R GY+YAL ++N G + S I+ + ++ SG+ L+R TE PL+Y+W+ Y Sbjct: 200 RAGYLYALLYLNTEIGPGTVCESAIKEVVNAIIESGKTLSREERKTERCPLLYQWHRKQY 259 Query: 673 VGAAHGLSRIYYYLMQTILSMNHAKFQSLVKPNADYVCQLKFPSR*LPS 819 VGAAHG++ IYY LMQ ++ +VKP+ DYV KF S PS Sbjct: 260 VGAAHGMAGIYYMLMQPAAKVDQETLTEMVKPSIDYVRHKKFRSGNYPS 308 Score = 39.7 bits (91), Expect(3) = 1e-38 Identities = 15/31 (48%), Positives = 19/31 (61%) Frame = +2 Query: 809 NYPP*LEQPQKLLIHWCHSSPGVIQLSLPAY 901 NYP L L+HWCH +PGVI + + AY Sbjct: 305 NYPSSLSNETDRLVHWCHGAPGVIHMLMQAY 335 Score = 26.9 bits (58), Expect(3) = 1e-38 Identities = 10/16 (62%), Positives = 12/16 (75%) Frame = +2 Query: 209 AYPAWASIAVLYVQLY 256 AY W IA+LY+QLY Sbjct: 102 AYTGWTGIALLYLQLY 117 >ref|NP_940913.1| LanC lantibiotic synthetase component C-like 3 [Homo sapiens] Length = 388 Score = 51.2 bits (121), Expect = 2e-06 Identities = 50/179 (27%), Positives = 82/179 (45%), Gaps = 8/179 (4%) Frame = +1 Query: 346 FLCGDAGPLPMAAVVHDPMNNAKQAE-----HCIARLIHLNKIDPHAPNEMLYGRMGYIY 510 FL G AG +A +V+ + + + + + +E+ GR GY+ Sbjct: 120 FLLGGAGVYAVATLVYHALGRSDYVQPLGKFRALCAVCAPVSFLECGSDELFVGRAGYLC 179 Query: 511 ALPFVNMNFGVQKIPRSHIQHICETVLTSGENLARTIHFTE*TPLMYEWYL**YVGAAHG 690 A + + + + I+ IC+ +L SG+ A I + PLMY +Y Y+GAAHG Sbjct: 180 AALVLKQKLAQEVLTPAQIKSICQAILDSGKQYA--IKKRKPFPLMYSYYGTEYLGAAHG 237 Query: 691 LSRIYYYLMQTILSMN-HAK--FQSLVKPNADYVCQLKFPSR*LPSLIGTTSKIANPLV 858 LS I +Q +LS + H K + LV + D++ + + P L G T + N LV Sbjct: 238 LSSI----LQMLLSYHEHLKPSDRELVWQSVDFLMEQEQNCNWPPEL-GETIERENELV 291 Database: RefSeqHP Posted date: Aug 2, 2006 12:57 AM Number of letters in database: 17,774,539 Number of sequences in database: 39,411 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 49,578,605 Number of Sequences: 39411 Number of extensions: 1301299 Number of successful extensions: 2936 Number of sequences better than 1.0e-05: 3 Number of HSP's better than 0.0 without gapping: 2691 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2931 length of database: 17,774,539 effective HSP length: 104 effective length of database: 13,675,795 effective search space used: 4225820655 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
Search to RefSeqMP
BLASTX 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= 20060611S-057267 (1242 letters) Database: RefSeqMP 45,328 sequences; 21,768,885 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Alignment gi|NP_067270.1| LanC (bacterial lantibiotic synthetase componen... 252 1e-74 Alignment gi|NP_598498.1| LanC (bacterial lantibiotic synthetase componen... 132 3e-38 Alignment gi|XP_984245.1| PREDICTED: similar to LanC (bacterial lantibiot... 132 3e-38 Alignment gi|NP_775590.1| LanC lantibiotic synthetase component C-like 3 ... 52 2e-06 >ref|NP_067270.1| LanC (bacterial lantibiotic synthetase component C)-like 1 [Mus musculus] Length = 399 Score = 252 bits (643), Expect(2) = 1e-74 Identities = 138/272 (50%), Positives = 172/272 (63%), Gaps = 2/272 (0%) Frame = +1 Query: 25 MAHMAFPNAYVYCITSLPQSYFNSAAQAQSRDIATTRTLRSQTFFTKRRVGLQSSNPPYG 204 MA AFPN Y SL ++YF+S + + + + T + + + GL+S++P G Sbjct: 1 MAQRAFPNPYADYNKSLAENYFDSTGRL-TPEFSHRLTNKIRELLQQMERGLKSADPRDG 59 Query: 205 TCLPCMGKYXXXXXXXXXXXXXXXXXXXWPMAKQ--RQSPNCLTNRSITFLCGDAGPLPM 378 T + MA +QS NCL+ RSITFLCGDAGPL + Sbjct: 60 TGYT---GWAGIAVLYLHLHNVFGDPAYLQMAHSYVKQSLNCLSRRSITFLCGDAGPLAV 116 Query: 379 AAVVHDPMNNAKQAEHCIARLIHLNKIDPHAPNEMLYGRMGYIYALPFVNMNFGVQKIPR 558 AAV++ MN+ KQAE CI RLIHLNKIDPH PNEMLYGR+GYI+AL FVN NFG +KIP+ Sbjct: 117 AAVLYHKMNSEKQAEECITRLIHLNKIDPHVPNEMLYGRIGYIFALLFVNKNFGEEKIPQ 176 Query: 559 SHIQHICETVLTSGENLARTIHFTE*TPLMYEWYL**YVGAAHGLSRIYYYLMQTILSMN 738 SHIQ ICE +LTSGENL+R + +PLMYEWY YVGAAHGL+ IYYYLMQ L +N Sbjct: 177 SHIQQICENILTSGENLSRKRNLAAKSPLMYEWYQEYYVGAAHGLAGIYYYLMQPSLQVN 236 Query: 739 HAKFQSLVKPNADYVCQLKFPSR*LPSLIGTT 834 K SLVKP+ D+VC+LKFPS P + T Sbjct: 237 QGKLHSLVKPSVDFVCRLKFPSGNYPPCLDDT 268 Score = 48.1 bits (113), Expect(2) = 1e-74 Identities = 25/60 (41%), Positives = 37/60 (61%) Frame = +2 Query: 809 NYPP*LEQPQKLLIHWCHSSPGVIQLSLPAY*GVHMKKGISLYAYQCGLILF*KSGLSKK 988 NYPP L+ + LL+HWCH +PGVI + + AY V ++ A QC +++ + GL KK Sbjct: 260 NYPPCLDDTRDLLVHWCHGAPGVIYMLIQAY-KVFKEERYLCDAQQCADVIW-QYGLLKK 317 >ref|NP_598498.1| LanC (bacterial lantibiotic synthetase component C)-like 2 [Mus musculus] Length = 450 Score = 132 bits (331), Expect(3) = 3e-38 Identities = 64/169 (37%), Positives = 104/169 (61%), Gaps = 4/169 (2%) Frame = +1 Query: 325 LTNRSITFLCGDAGPLPMAAVVHDPMNNAKQAEHCIARLIHLNKI----DPHAPNEMLYG 492 L+ R +TFLCGDAGPL + AV++ + + +++ CI +L+ +++ + P+E+LYG Sbjct: 140 LSGRRVTFLCGDAGPLAVGAVIYHKLKSECESQECITKLLQMHRTIVCQESELPDELLYG 199 Query: 493 RMGYIYALPFVNMNFGVQKIPRSHIQHICETVLTSGENLARTIHFTE*TPLMYEWYL**Y 672 R GY+YAL ++N G + + I+ + ++ SG++L+R +E PL+Y+W+ Y Sbjct: 200 RAGYLYALLYLNTEIGPGTVGETAIKEVVSAIIESGKSLSREERKSERCPLLYQWHRKQY 259 Query: 673 VGAAHGLSRIYYYLMQTILSMNHAKFQSLVKPNADYVCQLKFPSR*LPS 819 VGAAHG++ IYY LMQ ++ +VKP+ DYV KF S PS Sbjct: 260 VGAAHGMAGIYYMLMQPEAKVDQETLTEMVKPSIDYVRHKKFRSGNYPS 308 Score = 40.0 bits (92), Expect(3) = 3e-38 Identities = 16/31 (51%), Positives = 19/31 (61%) Frame = +2 Query: 809 NYPP*LEQPQKLLIHWCHSSPGVIQLSLPAY 901 NYP L L+HWCH +PGVI + L AY Sbjct: 305 NYPSSLSNETDRLVHWCHGAPGVIHVLLQAY 335 Score = 26.9 bits (58), Expect(3) = 3e-38 Identities = 10/16 (62%), Positives = 12/16 (75%) Frame = +2 Query: 209 AYPAWASIAVLYVQLY 256 AY W IA+LY+QLY Sbjct: 102 AYTGWTGIALLYLQLY 117 >ref|XP_984245.1| PREDICTED: similar to LanC (bacterial lantibiotic synthetase component C)-like 2 [Mus musculus] Length = 390 Score = 132 bits (331), Expect(3) = 3e-38 Identities = 64/169 (37%), Positives = 104/169 (61%), Gaps = 4/169 (2%) Frame = +1 Query: 325 LTNRSITFLCGDAGPLPMAAVVHDPMNNAKQAEHCIARLIHLNKI----DPHAPNEMLYG 492 L+ R +TFLCGDAGPL + AV++ + + +++ CI +L+ +++ + P+E+LYG Sbjct: 140 LSGRRVTFLCGDAGPLAVGAVIYHKLKSECESQECITKLLQMHRTIVCQESELPDELLYG 199 Query: 493 RMGYIYALPFVNMNFGVQKIPRSHIQHICETVLTSGENLARTIHFTE*TPLMYEWYL**Y 672 R GY+YAL ++N G + + I+ + ++ SG++L+R +E PL+Y+W+ Y Sbjct: 200 RAGYLYALLYLNTEIGPGTVGETAIKEVVSAIIESGKSLSREERKSERCPLLYQWHRKQY 259 Query: 673 VGAAHGLSRIYYYLMQTILSMNHAKFQSLVKPNADYVCQLKFPSR*LPS 819 VGAAHG++ IYY LMQ ++ +VKP+ DYV KF S PS Sbjct: 260 VGAAHGMAGIYYMLMQPEAKVDQETLTEMVKPSIDYVRHKKFRSGNYPS 308 Score = 40.0 bits (92), Expect(3) = 3e-38 Identities = 16/31 (51%), Positives = 19/31 (61%) Frame = +2 Query: 809 NYPP*LEQPQKLLIHWCHSSPGVIQLSLPAY 901 NYP L L+HWCH +PGVI + L AY Sbjct: 305 NYPSSLSNETDRLVHWCHGAPGVIHVLLQAY 335 Score = 26.9 bits (58), Expect(3) = 3e-38 Identities = 10/16 (62%), Positives = 12/16 (75%) Frame = +2 Query: 209 AYPAWASIAVLYVQLY 256 AY W IA+LY+QLY Sbjct: 102 AYTGWTGIALLYLQLY 117 >ref|NP_775590.1| LanC lantibiotic synthetase component C-like 3 [Mus musculus] Length = 420 Score = 51.6 bits (122), Expect = 2e-06 Identities = 42/131 (32%), Positives = 67/131 (51%), Gaps = 3/131 (2%) Frame = +1 Query: 475 NEMLYGRMGYIYALPFVNMNFGVQKIPRSHIQHICETVLTSGENLARTIHFTE*TPLMYE 654 +E+ GR GY+ A + + + + I+ IC+ +L SG+ A + + PLMY Sbjct: 168 DELFVGRAGYLCAALVLKQKLAQEVLTPTQIKAICQAILDSGKQYA--LKKRKPFPLMYS 225 Query: 655 WYL**YVGAAHGLSRIYYYLMQTILS-MNHAK--FQSLVKPNADYVCQLKFPSR*LPSLI 825 +Y Y+GAAHGLS I +Q +LS H K + LV+ + D++ + + P L Sbjct: 226 YYGTEYLGAAHGLSSI----LQMLLSYQEHLKPSDRELVRQSVDFLMEQEQNCNWPPEL- 280 Query: 826 GTTSKIANPLV 858 G T + N LV Sbjct: 281 GETIERENELV 291 Database: RefSeqMP Posted date: Aug 2, 2006 12:58 AM Number of letters in database: 21,768,885 Number of sequences in database: 45,328 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 59,670,087 Number of Sequences: 45328 Number of extensions: 1542332 Number of successful extensions: 3232 Number of sequences better than 1.0e-05: 4 Number of HSP's better than 0.0 without gapping: 2963 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3228 length of database: 21,768,885 effective HSP length: 106 effective length of database: 16,964,117 effective search space used: 5207983919 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)