Animal-Genome cDNA 20060611S-057267


Search to RefSeqSP

BLASTX 2.2.10 [Oct-19-2004]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20060611S-057267
         (1242 letters)

Database: RefSeqSP 
           1040 sequences; 434,620 total letters

Searching...done

 ***** No hits found ******

  Database: RefSeqSP
    Posted date:  Aug 1, 2006  7:14 PM
  Number of letters in database: 434,620
  Number of sequences in database:  1040
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,214,983
Number of Sequences: 1040
Number of extensions: 31509
Number of successful extensions: 70
Number of sequences better than 1.0e-05: 0
Number of HSP's better than  0.0 without gapping: 65
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 70
length of database: 434,620
effective HSP length: 79
effective length of database: 352,460
effective search space used: 117721640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

Search to RefSeqBP

BLASTX 2.2.10 [Oct-19-2004]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20060611S-057267
         (1242 letters)

Database: RefSeqBP 
           33,508 sequences; 16,112,626 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|XP_612082.2| PREDICTED: similar to LanC-like protein 1 (40 k...   256   2e-76
Alignment   gi|XP_614740.2| PREDICTED: similar to LanC-like protein 2 (Test...   130   3e-37

>ref|XP_612082.2| PREDICTED: similar to LanC-like protein 1 (40 kDa erythrocyte
           membrane protein) (p40) [Bos taurus]
          Length = 399

 Score =  256 bits (655), Expect(2) = 2e-76
 Identities = 144/269 (53%), Positives = 170/269 (63%), Gaps = 2/269 (0%)
 Frame = +1

Query: 25  MAHMAFPNAYVYCITSLPQSYFNSAAQAQSRDIATTRTLRSQTFFTKRRVGLQSSNPPYG 204
           MA  AFPN Y     SL + YF+SA +  + + +     + +    +   GL+S++P   
Sbjct: 1   MAQRAFPNPYADYNKSLAEGYFDSAGRL-TPEFSQRLNNKIRELLQQMERGLKSADPRDS 59

Query: 205 TCLPCMGKYXXXXXXXXXXXXXXXXXXXWPMAKQ--RQSPNCLTNRSITFLCGDAGPLPM 378
           T       +                     MA    +QS N L+  SITFLCGD GPL +
Sbjct: 60  TVYT---GWAGIAVLYLHLYDVFGDPNYLQMAHGYVKQSLNSLSKHSITFLCGDGGPLAV 116

Query: 379 AAVVHDPMNNAKQAEHCIARLIHLNKIDPHAPNEMLYGRMGYIYALPFVNMNFGVQKIPR 558
           AAVVH  MNN KQAE CI RLIHLNKIDPHAP+EMLYGRMGYI AL FVN NFG +KIP+
Sbjct: 117 AAVVHHKMNNEKQAEECITRLIHLNKIDPHAPSEMLYGRMGYISALLFVNKNFGEEKIPQ 176

Query: 559 SHIQHICETVLTSGENLARTIHFTE*TPLMYEWYL**YVGAAHGLSRIYYYLMQTILSMN 738
           SHIQ ICETVLTSGE+LAR   FT  TPLMYEWY   YVGAAHGL+ IYYYLMQ  L ++
Sbjct: 177 SHIQQICETVLTSGEDLARKRRFTGKTPLMYEWYQEYYVGAAHGLAGIYYYLMQPSLQVS 236

Query: 739 HAKFQSLVKPNADYVCQLKFPSR*LPSLI 825
           HAK  +LVKP+ DYVCQLKFPS   P  +
Sbjct: 237 HAKLHNLVKPSVDYVCQLKFPSGNYPPCV 265



 Score = 48.5 bits (114), Expect(2) = 2e-76
 Identities = 26/60 (43%), Positives = 37/60 (61%)
 Frame = +2

Query: 809 NYPP*LEQPQKLLIHWCHSSPGVIQLSLPAY*GVHMKKGISLYAYQCGLILF*KSGLSKK 988
           NYPP ++  + LLIHWCH +PGVI +   AY  V  ++     AYQC  +++ + GL KK
Sbjct: 260 NYPPCVDDSRDLLIHWCHGAPGVIYMLTQAY-KVFKEERYLNDAYQCADVIW-QYGLLKK 317


>ref|XP_614740.2| PREDICTED: similar to LanC-like protein 2 (Testis-specific
           adriamycin sensitivity protein), partial [Bos taurus]
          Length = 331

 Score =  130 bits (327), Expect(3) = 3e-37
 Identities = 66/169 (39%), Positives = 100/169 (59%), Gaps = 4/169 (2%)
 Frame = +1

Query: 325 LTNRSITFLCGDAGPLPMAAVVHDPMNNAKQAEHCIARLIHLNKI----DPHAPNEMLYG 492
           L  R +TFLCGDAGPL + AVV+  + +  +++ CI +L+ L +     D   P+E+LYG
Sbjct: 135 LNGRRVTFLCGDAGPLAVGAVVYHKLKSDCESQECITKLLQLQRTIVCRDSDLPDELLYG 194

Query: 493 RMGYIYALPFVNMNFGVQKIPRSHIQHICETVLTSGENLARTIHFTE*TPLMYEWYL**Y 672
           R GY+YAL +VN   G   +  S I+ +   ++ SG+ L++     E  PL+Y+W+   Y
Sbjct: 195 RAGYLYALLYVNTEIGPGAVCESAIKEVVNAIIESGKALSKEEKKVERCPLLYQWHRKQY 254

Query: 673 VGAAHGLSRIYYYLMQTILSMNHAKFQSLVKPNADYVCQLKFPSR*LPS 819
           VGAAHG++ IYY LMQ    ++      +VKP+ DY+   +F S   PS
Sbjct: 255 VGAAHGMAGIYYMLMQPAAKVDQETLTEMVKPSIDYMRHKRFRSGNYPS 303



 Score = 37.4 bits (85), Expect(3) = 3e-37
 Identities = 14/31 (45%), Positives = 19/31 (61%)
 Frame = +2

Query: 809 NYPP*LEQPQKLLIHWCHSSPGVIQLSLPAY 901
           NYP  L      L+HWCH +PGVI + + A+
Sbjct: 300 NYPSSLSNETDRLVHWCHGAPGVIHVLMQAH 330



 Score = 26.9 bits (58), Expect(3) = 3e-37
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = +2

Query: 209 AYPAWASIAVLYVQLY 256
           AY  W  IA+LY+QLY
Sbjct: 97  AYTGWTGIALLYLQLY 112


  Database: RefSeqBP
    Posted date:  Aug 1, 2006  7:14 PM
  Number of letters in database: 16,112,626
  Number of sequences in database:  33,508
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 44,164,071
Number of Sequences: 33508
Number of extensions: 1143623
Number of successful extensions: 2447
Number of sequences better than 1.0e-05: 2
Number of HSP's better than  0.0 without gapping: 2266
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2446
length of database: 16,112,626
effective HSP length: 104
effective length of database: 12,627,794
effective search space used: 3901988346
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

Search to RefSeqCP

BLASTX 2.2.10 [Oct-19-2004]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20060611S-057267
         (1242 letters)

Database: RefSeqCP 
           33,732 sequences; 19,266,565 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|XP_536055.1| PREDICTED: similar to LanC-like protein 1 (40 k...   256   2e-75
Alignment   gi|XP_540359.2| PREDICTED: similar to LanC-like protein 2 (Test...   131   5e-38
Alignment   gi|XP_548943.2| PREDICTED: similar to LanC lantibiotic syntheta...    50   4e-06

>ref|XP_536055.1| PREDICTED: similar to LanC-like protein 1 (40 kDa erythrocyte
           membrane protein) (p40) [Canis familiaris]
          Length = 399

 Score =  256 bits (653), Expect(2) = 2e-75
 Identities = 143/269 (53%), Positives = 170/269 (63%), Gaps = 2/269 (0%)
 Frame = +1

Query: 25  MAHMAFPNAYVYCITSLPQSYFNSAAQAQSRDIATTRTLRSQTFFTKRRVGLQSSNPPYG 204
           MA  AFPN Y     SL +SYF+ A +  + + +     + +    +   GL+S++P   
Sbjct: 1   MAQRAFPNPYADFNKSLAESYFDCAGRL-TPEFSQRLNNKIRELLQQMERGLKSADPRDS 59

Query: 205 TCLPCMGKYXXXXXXXXXXXXXXXXXXXWPMAKQ--RQSPNCLTNRSITFLCGDAGPLPM 378
           T       +                     MA    +QS N LT RSITFLCGDAGPL +
Sbjct: 60  TVYT---GWAGIALLYLHLYDVFGDPAYLQMAHGYVKQSLNSLTKRSITFLCGDAGPLAI 116

Query: 379 AAVVHDPMNNAKQAEHCIARLIHLNKIDPHAPNEMLYGRMGYIYALPFVNMNFGVQKIPR 558
            AVV+  MNN KQAE CI RLIHLNKID HAPNEMLYGRMGY+YAL FVN NFGV+KIP+
Sbjct: 117 GAVVYHKMNNEKQAEDCITRLIHLNKIDHHAPNEMLYGRMGYVYALLFVNKNFGVEKIPQ 176

Query: 559 SHIQHICETVLTSGENLARTIHFTE*TPLMYEWYL**YVGAAHGLSRIYYYLMQTILSMN 738
           SHIQ ICE VLTSGENLA+  +FT  TPLMYEWY   YVGAAHGL+ IYY LMQ  L ++
Sbjct: 177 SHIQQICEAVLTSGENLAQKRNFTAKTPLMYEWYQEYYVGAAHGLAGIYYLLMQPSLQVS 236

Query: 739 HAKFQSLVKPNADYVCQLKFPSR*LPSLI 825
           H K  +LVKP+ DYVCQLKFPS   P  +
Sbjct: 237 HVKLHNLVKPSVDYVCQLKFPSGNYPPCV 265



 Score = 46.6 bits (109), Expect(2) = 2e-75
 Identities = 23/60 (38%), Positives = 38/60 (63%)
 Frame = +2

Query: 809 NYPP*LEQPQKLLIHWCHSSPGVIQLSLPAY*GVHMKKGISLYAYQCGLILF*KSGLSKK 988
           NYPP ++  + LL+HWCH SPGVI + + AY     +  ++  A+QC  +++ + GL +K
Sbjct: 260 NYPPCVDDNRDLLVHWCHGSPGVIYMLIQAYKAFRGEHYLN-DAHQCADVIW-RYGLLRK 317


>ref|XP_540359.2| PREDICTED: similar to LanC-like protein 2 (Testis-specific
           adriamycin sensitivity protein) [Canis familiaris]
          Length = 452

 Score =  131 bits (329), Expect(3) = 5e-38
 Identities = 67/169 (39%), Positives = 100/169 (59%), Gaps = 4/169 (2%)
 Frame = +1

Query: 325 LTNRSITFLCGDAGPLPMAAVVHDPMNNAKQAEHCIARLIHLNKI----DPHAPNEMLYG 492
           L  R +TFLCGDAGPL + AVV+  + +  +++ CI +L+ L +     D   P+E+LYG
Sbjct: 139 LNGRRVTFLCGDAGPLAVGAVVYHKLKSDCESQECITKLLQLQRTIVCRDSDLPDELLYG 198

Query: 493 RMGYIYALPFVNMNFGVQKIPRSHIQHICETVLTSGENLARTIHFTE*TPLMYEWYL**Y 672
           R GY+YAL ++N   G   +  S I+ +   ++ SG+ L+R     E  PL+Y+W+   Y
Sbjct: 199 RAGYLYALLYLNTEIGPGTVCESAIKEVVCAIIESGKTLSREERKAERCPLLYQWHRKQY 258

Query: 673 VGAAHGLSRIYYYLMQTILSMNHAKFQSLVKPNADYVCQLKFPSR*LPS 819
           VGAAHG++ IYY LMQ    ++      +VKP+ DYV   +F S   PS
Sbjct: 259 VGAAHGMAGIYYMLMQPAAKVDQETLTEMVKPSIDYVRHKRFRSGNYPS 307



 Score = 39.7 bits (91), Expect(3) = 5e-38
 Identities = 15/31 (48%), Positives = 19/31 (61%)
 Frame = +2

Query: 809 NYPP*LEQPQKLLIHWCHSSPGVIQLSLPAY 901
           NYP  L      L+HWCH +PGVI + + AY
Sbjct: 304 NYPSSLSNETDRLVHWCHGAPGVIHMLMQAY 334



 Score = 26.9 bits (58), Expect(3) = 5e-38
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = +2

Query: 209 AYPAWASIAVLYVQLY 256
           AY  W  IA+LY+QLY
Sbjct: 101 AYTGWTGIALLYLQLY 116


>ref|XP_548943.2| PREDICTED: similar to LanC lantibiotic synthetase component C-like
           3 [Canis familiaris]
          Length = 420

 Score = 50.4 bits (119), Expect = 4e-06
 Identities = 43/156 (27%), Positives = 73/156 (46%), Gaps = 8/156 (5%)
 Frame = +1

Query: 346 FLCGDAGPLPMAAVVHDPMNNAKQAE-----HCIARLIHLNKIDPHAPNEMLYGRMGYIY 510
           FL G AG   +A +V+  +  +   +       +  +           +E+  GR GY+ 
Sbjct: 120 FLLGGAGVYAVATLVYHALGRSDYVQPLGKFRALCAVCAPVSFLECGSDELFVGRAGYLC 179

Query: 511 ALPFVNMNFGVQKIPRSHIQHICETVLTSGENLARTIHFTE*TPLMYEWYL**YVGAAHG 690
           A   +      + +  + I+ IC+ +L SG+  A  +   +  PLMY +Y   Y+GAAHG
Sbjct: 180 AALVLKQKLAQEVLTPAQIKSICQAILDSGKQYA--MKKRKPFPLMYSYYGTEYLGAAHG 237

Query: 691 LSRIYYYLMQTILSMN-HAK--FQSLVKPNADYVCQ 789
           LS I    +Q +LS + H K   Q LV  + D++ +
Sbjct: 238 LSSI----LQMLLSYHEHLKPSDQELVWQSVDFLME 269


  Database: RefSeqCP
    Posted date:  Aug 1, 2006  9:25 PM
  Number of letters in database: 19,266,565
  Number of sequences in database:  33,732
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 51,827,983
Number of Sequences: 33732
Number of extensions: 1334050
Number of successful extensions: 2726
Number of sequences better than 1.0e-05: 3
Number of HSP's better than  0.0 without gapping: 2512
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2724
length of database: 19,266,565
effective HSP length: 105
effective length of database: 15,724,705
effective search space used: 4843209140
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

Search to RefSeqHP

BLASTX 2.2.10 [Oct-19-2004]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20060611S-057267
         (1242 letters)

Database: RefSeqHP 
           39,411 sequences; 17,774,539 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_006046.1| lanthionine synthetase C-like protein 1 [Homo s...   269   4e-80
Alignment   gi|NP_061167.1| LanC lantibiotic synthetase component C-like 2 ...   133   1e-38
Alignment   gi|NP_940913.1| LanC lantibiotic synthetase component C-like 3 ...    51   2e-06

>ref|NP_006046.1| lanthionine synthetase C-like protein 1 [Homo sapiens]
          Length = 399

 Score =  269 bits (688), Expect(2) = 4e-80
 Identities = 147/268 (54%), Positives = 174/268 (64%)
 Frame = +1

Query: 25  MAHMAFPNAYVYCITSLPQSYFNSAAQAQSRDIATTRTLRSQTFFTKRRVGLQSSNPPYG 204
           MA  AFPN Y     SL + YF++A +  + + +   T + +    +   GL+S++P  G
Sbjct: 1   MAQRAFPNPYADYNKSLAEGYFDAAGRL-TPEFSQRLTNKIRELLQQMERGLKSADPRDG 59

Query: 205 TCLPCMGKYXXXXXXXXXXXXXXXXXXXWPMAKQRQSPNCLTNRSITFLCGDAGPLPMAA 384
           T                                 +QS NCLT RSITFLCGDAGPL +AA
Sbjct: 60  TGYTGWAGIAVLYLHLYDVFGDPAYLQL-AHGYVKQSLNCLTKRSITFLCGDAGPLAVAA 118

Query: 385 VVHDPMNNAKQAEHCIARLIHLNKIDPHAPNEMLYGRMGYIYALPFVNMNFGVQKIPRSH 564
           V++  MNN KQAE CI RLIHLNKIDPHAPNEMLYGR+GYIYAL FVN NFGV+KIP+SH
Sbjct: 119 VLYHKMNNEKQAEDCITRLIHLNKIDPHAPNEMLYGRIGYIYALLFVNKNFGVEKIPQSH 178

Query: 565 IQHICETVLTSGENLARTIHFTE*TPLMYEWYL**YVGAAHGLSRIYYYLMQTILSMNHA 744
           IQ ICET+LTSGENLAR  +FT  +PLMYEWY   YVGAAHGL+ IYYYLMQ  L ++  
Sbjct: 179 IQQICETILTSGENLARKRNFTAKSPLMYEWYQEYYVGAAHGLAGIYYYLMQPSLQVSQG 238

Query: 745 KFQSLVKPNADYVCQLKFPSR*LPSLIG 828
           K  SLVKP+ DYVCQLKFPS   P  IG
Sbjct: 239 KLHSLVKPSVDYVCQLKFPSGNYPPCIG 266



 Score = 48.5 bits (114), Expect(2) = 4e-80
 Identities = 25/60 (41%), Positives = 37/60 (61%)
 Frame = +2

Query: 809 NYPP*LEQPQKLLIHWCHSSPGVIQLSLPAY*GVHMKKGISLYAYQCGLILF*KSGLSKK 988
           NYPP +   + LL+HWCH +PGVI + + AY  V  ++     AYQC  +++ + GL KK
Sbjct: 260 NYPPCIGDNRDLLVHWCHGAPGVIYMLIQAY-KVFREEKYLCDAYQCADVIW-QYGLLKK 317


>ref|NP_061167.1| LanC lantibiotic synthetase component C-like 2 [Homo sapiens]
          Length = 450

 Score =  133 bits (334), Expect(3) = 1e-38
 Identities = 66/169 (39%), Positives = 101/169 (59%), Gaps = 4/169 (2%)
 Frame = +1

Query: 325 LTNRSITFLCGDAGPLPMAAVVHDPMNNAKQAEHCIARLIHLNKI----DPHAPNEMLYG 492
           L  R +TFLCGDAGPL + AV++  + +  +++ C+ +L+ L +     +   P+E+LYG
Sbjct: 140 LNGRRVTFLCGDAGPLAVGAVIYHKLRSDCESQECVTKLLQLQRSVVCQESDLPDELLYG 199

Query: 493 RMGYIYALPFVNMNFGVQKIPRSHIQHICETVLTSGENLARTIHFTE*TPLMYEWYL**Y 672
           R GY+YAL ++N   G   +  S I+ +   ++ SG+ L+R    TE  PL+Y+W+   Y
Sbjct: 200 RAGYLYALLYLNTEIGPGTVCESAIKEVVNAIIESGKTLSREERKTERCPLLYQWHRKQY 259

Query: 673 VGAAHGLSRIYYYLMQTILSMNHAKFQSLVKPNADYVCQLKFPSR*LPS 819
           VGAAHG++ IYY LMQ    ++      +VKP+ DYV   KF S   PS
Sbjct: 260 VGAAHGMAGIYYMLMQPAAKVDQETLTEMVKPSIDYVRHKKFRSGNYPS 308



 Score = 39.7 bits (91), Expect(3) = 1e-38
 Identities = 15/31 (48%), Positives = 19/31 (61%)
 Frame = +2

Query: 809 NYPP*LEQPQKLLIHWCHSSPGVIQLSLPAY 901
           NYP  L      L+HWCH +PGVI + + AY
Sbjct: 305 NYPSSLSNETDRLVHWCHGAPGVIHMLMQAY 335



 Score = 26.9 bits (58), Expect(3) = 1e-38
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = +2

Query: 209 AYPAWASIAVLYVQLY 256
           AY  W  IA+LY+QLY
Sbjct: 102 AYTGWTGIALLYLQLY 117


>ref|NP_940913.1| LanC lantibiotic synthetase component C-like 3 [Homo sapiens]
          Length = 388

 Score = 51.2 bits (121), Expect = 2e-06
 Identities = 50/179 (27%), Positives = 82/179 (45%), Gaps = 8/179 (4%)
 Frame = +1

Query: 346 FLCGDAGPLPMAAVVHDPMNNAKQAE-----HCIARLIHLNKIDPHAPNEMLYGRMGYIY 510
           FL G AG   +A +V+  +  +   +       +  +           +E+  GR GY+ 
Sbjct: 120 FLLGGAGVYAVATLVYHALGRSDYVQPLGKFRALCAVCAPVSFLECGSDELFVGRAGYLC 179

Query: 511 ALPFVNMNFGVQKIPRSHIQHICETVLTSGENLARTIHFTE*TPLMYEWYL**YVGAAHG 690
           A   +      + +  + I+ IC+ +L SG+  A  I   +  PLMY +Y   Y+GAAHG
Sbjct: 180 AALVLKQKLAQEVLTPAQIKSICQAILDSGKQYA--IKKRKPFPLMYSYYGTEYLGAAHG 237

Query: 691 LSRIYYYLMQTILSMN-HAK--FQSLVKPNADYVCQLKFPSR*LPSLIGTTSKIANPLV 858
           LS I    +Q +LS + H K   + LV  + D++ + +      P L G T +  N LV
Sbjct: 238 LSSI----LQMLLSYHEHLKPSDRELVWQSVDFLMEQEQNCNWPPEL-GETIERENELV 291


  Database: RefSeqHP
    Posted date:  Aug 2, 2006 12:57 AM
  Number of letters in database: 17,774,539
  Number of sequences in database:  39,411
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 49,578,605
Number of Sequences: 39411
Number of extensions: 1301299
Number of successful extensions: 2936
Number of sequences better than 1.0e-05: 3
Number of HSP's better than  0.0 without gapping: 2691
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2931
length of database: 17,774,539
effective HSP length: 104
effective length of database: 13,675,795
effective search space used: 4225820655
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

Search to RefSeqMP

BLASTX 2.2.10 [Oct-19-2004]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20060611S-057267
         (1242 letters)

Database: RefSeqMP 
           45,328 sequences; 21,768,885 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_067270.1| LanC (bacterial lantibiotic synthetase componen...   252   1e-74
Alignment   gi|NP_598498.1| LanC (bacterial lantibiotic synthetase componen...   132   3e-38
Alignment   gi|XP_984245.1| PREDICTED: similar to LanC (bacterial lantibiot...   132   3e-38
Alignment   gi|NP_775590.1| LanC lantibiotic synthetase component C-like 3 ...    52   2e-06

>ref|NP_067270.1| LanC (bacterial lantibiotic synthetase component C)-like 1 [Mus
           musculus]
          Length = 399

 Score =  252 bits (643), Expect(2) = 1e-74
 Identities = 138/272 (50%), Positives = 172/272 (63%), Gaps = 2/272 (0%)
 Frame = +1

Query: 25  MAHMAFPNAYVYCITSLPQSYFNSAAQAQSRDIATTRTLRSQTFFTKRRVGLQSSNPPYG 204
           MA  AFPN Y     SL ++YF+S  +  + + +   T + +    +   GL+S++P  G
Sbjct: 1   MAQRAFPNPYADYNKSLAENYFDSTGRL-TPEFSHRLTNKIRELLQQMERGLKSADPRDG 59

Query: 205 TCLPCMGKYXXXXXXXXXXXXXXXXXXXWPMAKQ--RQSPNCLTNRSITFLCGDAGPLPM 378
           T       +                     MA    +QS NCL+ RSITFLCGDAGPL +
Sbjct: 60  TGYT---GWAGIAVLYLHLHNVFGDPAYLQMAHSYVKQSLNCLSRRSITFLCGDAGPLAV 116

Query: 379 AAVVHDPMNNAKQAEHCIARLIHLNKIDPHAPNEMLYGRMGYIYALPFVNMNFGVQKIPR 558
           AAV++  MN+ KQAE CI RLIHLNKIDPH PNEMLYGR+GYI+AL FVN NFG +KIP+
Sbjct: 117 AAVLYHKMNSEKQAEECITRLIHLNKIDPHVPNEMLYGRIGYIFALLFVNKNFGEEKIPQ 176

Query: 559 SHIQHICETVLTSGENLARTIHFTE*TPLMYEWYL**YVGAAHGLSRIYYYLMQTILSMN 738
           SHIQ ICE +LTSGENL+R  +    +PLMYEWY   YVGAAHGL+ IYYYLMQ  L +N
Sbjct: 177 SHIQQICENILTSGENLSRKRNLAAKSPLMYEWYQEYYVGAAHGLAGIYYYLMQPSLQVN 236

Query: 739 HAKFQSLVKPNADYVCQLKFPSR*LPSLIGTT 834
             K  SLVKP+ D+VC+LKFPS   P  +  T
Sbjct: 237 QGKLHSLVKPSVDFVCRLKFPSGNYPPCLDDT 268



 Score = 48.1 bits (113), Expect(2) = 1e-74
 Identities = 25/60 (41%), Positives = 37/60 (61%)
 Frame = +2

Query: 809 NYPP*LEQPQKLLIHWCHSSPGVIQLSLPAY*GVHMKKGISLYAYQCGLILF*KSGLSKK 988
           NYPP L+  + LL+HWCH +PGVI + + AY  V  ++     A QC  +++ + GL KK
Sbjct: 260 NYPPCLDDTRDLLVHWCHGAPGVIYMLIQAY-KVFKEERYLCDAQQCADVIW-QYGLLKK 317


>ref|NP_598498.1| LanC (bacterial lantibiotic synthetase component C)-like 2 [Mus
           musculus]
          Length = 450

 Score =  132 bits (331), Expect(3) = 3e-38
 Identities = 64/169 (37%), Positives = 104/169 (61%), Gaps = 4/169 (2%)
 Frame = +1

Query: 325 LTNRSITFLCGDAGPLPMAAVVHDPMNNAKQAEHCIARLIHLNKI----DPHAPNEMLYG 492
           L+ R +TFLCGDAGPL + AV++  + +  +++ CI +L+ +++     +   P+E+LYG
Sbjct: 140 LSGRRVTFLCGDAGPLAVGAVIYHKLKSECESQECITKLLQMHRTIVCQESELPDELLYG 199

Query: 493 RMGYIYALPFVNMNFGVQKIPRSHIQHICETVLTSGENLARTIHFTE*TPLMYEWYL**Y 672
           R GY+YAL ++N   G   +  + I+ +   ++ SG++L+R    +E  PL+Y+W+   Y
Sbjct: 200 RAGYLYALLYLNTEIGPGTVGETAIKEVVSAIIESGKSLSREERKSERCPLLYQWHRKQY 259

Query: 673 VGAAHGLSRIYYYLMQTILSMNHAKFQSLVKPNADYVCQLKFPSR*LPS 819
           VGAAHG++ IYY LMQ    ++      +VKP+ DYV   KF S   PS
Sbjct: 260 VGAAHGMAGIYYMLMQPEAKVDQETLTEMVKPSIDYVRHKKFRSGNYPS 308



 Score = 40.0 bits (92), Expect(3) = 3e-38
 Identities = 16/31 (51%), Positives = 19/31 (61%)
 Frame = +2

Query: 809 NYPP*LEQPQKLLIHWCHSSPGVIQLSLPAY 901
           NYP  L      L+HWCH +PGVI + L AY
Sbjct: 305 NYPSSLSNETDRLVHWCHGAPGVIHVLLQAY 335



 Score = 26.9 bits (58), Expect(3) = 3e-38
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = +2

Query: 209 AYPAWASIAVLYVQLY 256
           AY  W  IA+LY+QLY
Sbjct: 102 AYTGWTGIALLYLQLY 117


>ref|XP_984245.1| PREDICTED: similar to LanC (bacterial lantibiotic synthetase
           component C)-like 2 [Mus musculus]
          Length = 390

 Score =  132 bits (331), Expect(3) = 3e-38
 Identities = 64/169 (37%), Positives = 104/169 (61%), Gaps = 4/169 (2%)
 Frame = +1

Query: 325 LTNRSITFLCGDAGPLPMAAVVHDPMNNAKQAEHCIARLIHLNKI----DPHAPNEMLYG 492
           L+ R +TFLCGDAGPL + AV++  + +  +++ CI +L+ +++     +   P+E+LYG
Sbjct: 140 LSGRRVTFLCGDAGPLAVGAVIYHKLKSECESQECITKLLQMHRTIVCQESELPDELLYG 199

Query: 493 RMGYIYALPFVNMNFGVQKIPRSHIQHICETVLTSGENLARTIHFTE*TPLMYEWYL**Y 672
           R GY+YAL ++N   G   +  + I+ +   ++ SG++L+R    +E  PL+Y+W+   Y
Sbjct: 200 RAGYLYALLYLNTEIGPGTVGETAIKEVVSAIIESGKSLSREERKSERCPLLYQWHRKQY 259

Query: 673 VGAAHGLSRIYYYLMQTILSMNHAKFQSLVKPNADYVCQLKFPSR*LPS 819
           VGAAHG++ IYY LMQ    ++      +VKP+ DYV   KF S   PS
Sbjct: 260 VGAAHGMAGIYYMLMQPEAKVDQETLTEMVKPSIDYVRHKKFRSGNYPS 308



 Score = 40.0 bits (92), Expect(3) = 3e-38
 Identities = 16/31 (51%), Positives = 19/31 (61%)
 Frame = +2

Query: 809 NYPP*LEQPQKLLIHWCHSSPGVIQLSLPAY 901
           NYP  L      L+HWCH +PGVI + L AY
Sbjct: 305 NYPSSLSNETDRLVHWCHGAPGVIHVLLQAY 335



 Score = 26.9 bits (58), Expect(3) = 3e-38
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = +2

Query: 209 AYPAWASIAVLYVQLY 256
           AY  W  IA+LY+QLY
Sbjct: 102 AYTGWTGIALLYLQLY 117


>ref|NP_775590.1| LanC lantibiotic synthetase component C-like 3 [Mus musculus]
          Length = 420

 Score = 51.6 bits (122), Expect = 2e-06
 Identities = 42/131 (32%), Positives = 67/131 (51%), Gaps = 3/131 (2%)
 Frame = +1

Query: 475 NEMLYGRMGYIYALPFVNMNFGVQKIPRSHIQHICETVLTSGENLARTIHFTE*TPLMYE 654
           +E+  GR GY+ A   +      + +  + I+ IC+ +L SG+  A  +   +  PLMY 
Sbjct: 168 DELFVGRAGYLCAALVLKQKLAQEVLTPTQIKAICQAILDSGKQYA--LKKRKPFPLMYS 225

Query: 655 WYL**YVGAAHGLSRIYYYLMQTILS-MNHAK--FQSLVKPNADYVCQLKFPSR*LPSLI 825
           +Y   Y+GAAHGLS I    +Q +LS   H K   + LV+ + D++ + +      P L 
Sbjct: 226 YYGTEYLGAAHGLSSI----LQMLLSYQEHLKPSDRELVRQSVDFLMEQEQNCNWPPEL- 280

Query: 826 GTTSKIANPLV 858
           G T +  N LV
Sbjct: 281 GETIERENELV 291


  Database: RefSeqMP
    Posted date:  Aug 2, 2006 12:58 AM
  Number of letters in database: 21,768,885
  Number of sequences in database:  45,328
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 59,670,087
Number of Sequences: 45328
Number of extensions: 1542332
Number of successful extensions: 3232
Number of sequences better than 1.0e-05: 4
Number of HSP's better than  0.0 without gapping: 2963
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3228
length of database: 21,768,885
effective HSP length: 106
effective length of database: 16,964,117
effective search space used: 5207983919
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)