Search to RefSeqHP
BLASTX 2.2.10 [Oct-19-2004]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20060611S-057497
(1147 letters)
Database: RefSeqHP
39,411 sequences; 17,774,539 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_005608.1| ribosomal protein S14 [Homo sapiens] 280 2e-75
Alignment gi|NP_001020241.1| ribosomal protein S14 [Homo sapiens] 280 2e-75
Alignment gi|NP_001020242.1| ribosomal protein S14 [Homo sapiens] 280 2e-75
Alignment gi|XP_935199.1| PREDICTED: similar to ribosomal protein S14 [Ho... 263 2e-70
Alignment gi|XP_947805.1| PREDICTED: similar to ribosomal protein S14 [Ho... 263 2e-70
Alignment gi|XP_940670.1| PREDICTED: similar to ribosomal protein S14 [Ho... 102 6e-22
Alignment gi|XP_935116.1| PREDICTED: similar to ribosomal protein S14 [Ho... 102 6e-22
Alignment gi|XP_943617.1| PREDICTED: similar to ribosomal protein S14 [Ho... 102 6e-22
>ref|NP_005608.1| ribosomal protein S14 [Homo sapiens]
Length = 151
Score = 280 bits (715), Expect = 2e-75
Identities = 140/140 (100%), Positives = 140/140 (100%)
Frame = +2
Query: 17 MAPRKGKEKKEEQVISLGPQVAEGENVFGVCHIFASFNDTFVHVTDLSGKETICRVTGGM 196
MAPRKGKEKKEEQVISLGPQVAEGENVFGVCHIFASFNDTFVHVTDLSGKETICRVTGGM
Sbjct: 1 MAPRKGKEKKEEQVISLGPQVAEGENVFGVCHIFASFNDTFVHVTDLSGKETICRVTGGM 60
Query: 197 KVKADRDESSPYAAMLAAQDVAQRCKELGITALHIKLRATGGNRTKTPGPGAQSALRALA 376
KVKADRDESSPYAAMLAAQDVAQRCKELGITALHIKLRATGGNRTKTPGPGAQSALRALA
Sbjct: 61 KVKADRDESSPYAAMLAAQDVAQRCKELGITALHIKLRATGGNRTKTPGPGAQSALRALA 120
Query: 377 RSGMKIGRIEDVTPIPSDST 436
RSGMKIGRIEDVTPIPSDST
Sbjct: 121 RSGMKIGRIEDVTPIPSDST 140
>ref|NP_001020241.1| ribosomal protein S14 [Homo sapiens]
Length = 151
Score = 280 bits (715), Expect = 2e-75
Identities = 140/140 (100%), Positives = 140/140 (100%)
Frame = +2
Query: 17 MAPRKGKEKKEEQVISLGPQVAEGENVFGVCHIFASFNDTFVHVTDLSGKETICRVTGGM 196
MAPRKGKEKKEEQVISLGPQVAEGENVFGVCHIFASFNDTFVHVTDLSGKETICRVTGGM
Sbjct: 1 MAPRKGKEKKEEQVISLGPQVAEGENVFGVCHIFASFNDTFVHVTDLSGKETICRVTGGM 60
Query: 197 KVKADRDESSPYAAMLAAQDVAQRCKELGITALHIKLRATGGNRTKTPGPGAQSALRALA 376
KVKADRDESSPYAAMLAAQDVAQRCKELGITALHIKLRATGGNRTKTPGPGAQSALRALA
Sbjct: 61 KVKADRDESSPYAAMLAAQDVAQRCKELGITALHIKLRATGGNRTKTPGPGAQSALRALA 120
Query: 377 RSGMKIGRIEDVTPIPSDST 436
RSGMKIGRIEDVTPIPSDST
Sbjct: 121 RSGMKIGRIEDVTPIPSDST 140
>ref|NP_001020242.1| ribosomal protein S14 [Homo sapiens]
Length = 151
Score = 280 bits (715), Expect = 2e-75
Identities = 140/140 (100%), Positives = 140/140 (100%)
Frame = +2
Query: 17 MAPRKGKEKKEEQVISLGPQVAEGENVFGVCHIFASFNDTFVHVTDLSGKETICRVTGGM 196
MAPRKGKEKKEEQVISLGPQVAEGENVFGVCHIFASFNDTFVHVTDLSGKETICRVTGGM
Sbjct: 1 MAPRKGKEKKEEQVISLGPQVAEGENVFGVCHIFASFNDTFVHVTDLSGKETICRVTGGM 60
Query: 197 KVKADRDESSPYAAMLAAQDVAQRCKELGITALHIKLRATGGNRTKTPGPGAQSALRALA 376
KVKADRDESSPYAAMLAAQDVAQRCKELGITALHIKLRATGGNRTKTPGPGAQSALRALA
Sbjct: 61 KVKADRDESSPYAAMLAAQDVAQRCKELGITALHIKLRATGGNRTKTPGPGAQSALRALA 120
Query: 377 RSGMKIGRIEDVTPIPSDST 436
RSGMKIGRIEDVTPIPSDST
Sbjct: 121 RSGMKIGRIEDVTPIPSDST 140
>ref|XP_935199.1| PREDICTED: similar to ribosomal protein S14 [Homo sapiens]
Length = 170
Score = 263 bits (672), Expect = 2e-70
Identities = 135/165 (81%), Positives = 139/165 (84%)
Frame = +2
Query: 17 MAPRKGKEKKEEQVISLGPQVAEGENVFGVCHIFASFNDTFVHVTDLSGKETICRVTGGM 196
MAP KGKEKKEEQVI+LGPQVAEGENVFGVCHIFASFNDTFVHVTDLSGK+TICRVTGGM
Sbjct: 1 MAPGKGKEKKEEQVINLGPQVAEGENVFGVCHIFASFNDTFVHVTDLSGKQTICRVTGGM 60
Query: 197 KVKADRDESSPYAAMLAAQDVAQRCKELGITALHIKLRATGGNRTKTPGPGAQSALRALA 376
KVKADRDESSPYAAML QDVAQRCKELGI ALHI+LRATGGNRTKT GPGAQSALRALA
Sbjct: 61 KVKADRDESSPYAAMLTTQDVAQRCKELGIIALHIQLRATGGNRTKTLGPGAQSALRALA 120
Query: 377 RSGMKIGRIEDVTPIPSDSTXXXXXXXXXXXXXXXXXXXSVINCL 511
SGMKIGRIEDVTPIPSDST +INCL
Sbjct: 121 CSGMKIGRIEDVTPIPSDSTLRKGVTVVAVCEQDSSKYFLLINCL 165
>ref|XP_947805.1| PREDICTED: similar to ribosomal protein S14 [Homo sapiens]
Length = 170
Score = 263 bits (672), Expect = 2e-70
Identities = 135/165 (81%), Positives = 139/165 (84%)
Frame = +2
Query: 17 MAPRKGKEKKEEQVISLGPQVAEGENVFGVCHIFASFNDTFVHVTDLSGKETICRVTGGM 196
MAP KGKEKKEEQVI+LGPQVAEGENVFGVCHIFASFNDTFVHVTDLSGK+TICRVTGGM
Sbjct: 1 MAPGKGKEKKEEQVINLGPQVAEGENVFGVCHIFASFNDTFVHVTDLSGKQTICRVTGGM 60
Query: 197 KVKADRDESSPYAAMLAAQDVAQRCKELGITALHIKLRATGGNRTKTPGPGAQSALRALA 376
KVKADRDESSPYAAML QDVAQRCKELGI ALHI+LRATGGNRTKT GPGAQSALRALA
Sbjct: 61 KVKADRDESSPYAAMLTTQDVAQRCKELGIIALHIQLRATGGNRTKTLGPGAQSALRALA 120
Query: 377 RSGMKIGRIEDVTPIPSDSTXXXXXXXXXXXXXXXXXXXSVINCL 511
SGMKIGRIEDVTPIPSDST +INCL
Sbjct: 121 CSGMKIGRIEDVTPIPSDSTLRKGVTVVAVCEQDSSKYFLLINCL 165
>ref|XP_940670.1| PREDICTED: similar to ribosomal protein S14 [Homo sapiens]
Length = 68
Score = 102 bits (254), Expect = 6e-22
Identities = 52/66 (78%), Positives = 55/66 (83%)
Frame = +2
Query: 194 MKVKADRDESSPYAAMLAAQDVAQRCKELGITALHIKLRATGGNRTKTPGPGAQSALRAL 373
MK +AD+DESSP AML AQDV QRCKELGITALHIKL ATGGNRTKTPGPG + RAL
Sbjct: 1 MKEQADQDESSPCTAMLTAQDVVQRCKELGITALHIKLLATGGNRTKTPGPGVRLVPRAL 60
Query: 374 ARSGMK 391
A SGMK
Sbjct: 61 ACSGMK 66
>ref|XP_935116.1| PREDICTED: similar to ribosomal protein S14 [Homo sapiens]
Length = 68
Score = 102 bits (254), Expect = 6e-22
Identities = 52/66 (78%), Positives = 55/66 (83%)
Frame = +2
Query: 194 MKVKADRDESSPYAAMLAAQDVAQRCKELGITALHIKLRATGGNRTKTPGPGAQSALRAL 373
MK +AD+DESSP AML AQDV QRCKELGITALHIKL ATGGNRTKTPGPG + RAL
Sbjct: 1 MKEQADQDESSPCTAMLTAQDVVQRCKELGITALHIKLLATGGNRTKTPGPGVRLVPRAL 60
Query: 374 ARSGMK 391
A SGMK
Sbjct: 61 ACSGMK 66
>ref|XP_943617.1| PREDICTED: similar to ribosomal protein S14 [Homo sapiens]
Length = 68
Score = 102 bits (254), Expect = 6e-22
Identities = 52/66 (78%), Positives = 55/66 (83%)
Frame = +2
Query: 194 MKVKADRDESSPYAAMLAAQDVAQRCKELGITALHIKLRATGGNRTKTPGPGAQSALRAL 373
MK +AD+DESSP AML AQDV QRCKELGITALHIKL ATGGNRTKTPGPG + RAL
Sbjct: 1 MKEQADQDESSPCTAMLTAQDVVQRCKELGITALHIKLLATGGNRTKTPGPGVRLVPRAL 60
Query: 374 ARSGMK 391
A SGMK
Sbjct: 61 ACSGMK 66
Database: RefSeqHP
Posted date: Aug 2, 2006 12:57 AM
Number of letters in database: 17,774,539
Number of sequences in database: 39,411
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 22,514,309
Number of Sequences: 39411
Number of extensions: 650489
Number of successful extensions: 4065
Number of sequences better than 1.0e-05: 8
Number of HSP's better than 0.0 without gapping: 3099
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4015
length of database: 17,774,539
effective HSP length: 104
effective length of database: 13,675,795
effective search space used: 3788195215
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
Search to RefSeqMP
BLASTX 2.2.10 [Oct-19-2004]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20060611S-057497
(1147 letters)
Database: RefSeqMP
45,328 sequences; 21,768,885 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_065625.2| ribosomal protein S14 [Mus musculus] 280 3e-75
Alignment gi|XP_913463.1| PREDICTED: similar to ribosomal protein S14 iso... 271 9e-73
Alignment gi|XP_001001619.1| PREDICTED: similar to ribosomal protein S14 ... 267 2e-71
Alignment gi|XP_619341.1| PREDICTED: similar to ribosomal protein S14 iso... 267 2e-71
Alignment gi|XP_922266.1| PREDICTED: similar to ribosomal protein S14 [Mu... 130 2e-30
Alignment gi|XP_899377.1| PREDICTED: similar to ribosomal protein S14 [Mu... 130 2e-30
>ref|NP_065625.2| ribosomal protein S14 [Mus musculus]
Length = 151
Score = 280 bits (715), Expect = 3e-75
Identities = 140/140 (100%), Positives = 140/140 (100%)
Frame = +2
Query: 17 MAPRKGKEKKEEQVISLGPQVAEGENVFGVCHIFASFNDTFVHVTDLSGKETICRVTGGM 196
MAPRKGKEKKEEQVISLGPQVAEGENVFGVCHIFASFNDTFVHVTDLSGKETICRVTGGM
Sbjct: 1 MAPRKGKEKKEEQVISLGPQVAEGENVFGVCHIFASFNDTFVHVTDLSGKETICRVTGGM 60
Query: 197 KVKADRDESSPYAAMLAAQDVAQRCKELGITALHIKLRATGGNRTKTPGPGAQSALRALA 376
KVKADRDESSPYAAMLAAQDVAQRCKELGITALHIKLRATGGNRTKTPGPGAQSALRALA
Sbjct: 61 KVKADRDESSPYAAMLAAQDVAQRCKELGITALHIKLRATGGNRTKTPGPGAQSALRALA 120
Query: 377 RSGMKIGRIEDVTPIPSDST 436
RSGMKIGRIEDVTPIPSDST
Sbjct: 121 RSGMKIGRIEDVTPIPSDST 140
>ref|XP_913463.1| PREDICTED: similar to ribosomal protein S14 isoform 1 [Mus
musculus]
Length = 151
Score = 271 bits (693), Expect = 9e-73
Identities = 137/140 (97%), Positives = 138/140 (98%)
Frame = +2
Query: 17 MAPRKGKEKKEEQVISLGPQVAEGENVFGVCHIFASFNDTFVHVTDLSGKETICRVTGGM 196
MAPRKGKEKKEEQVISLGPQVAEGENVFGVCHIFASFNDTFVHVTDLSGK+TICRVTG M
Sbjct: 1 MAPRKGKEKKEEQVISLGPQVAEGENVFGVCHIFASFNDTFVHVTDLSGKKTICRVTGRM 60
Query: 197 KVKADRDESSPYAAMLAAQDVAQRCKELGITALHIKLRATGGNRTKTPGPGAQSALRALA 376
KVKADRDESS YAAMLAAQDVAQRCKELGITALHIKLRATGGNRTKTPGPGAQSALRALA
Sbjct: 61 KVKADRDESSLYAAMLAAQDVAQRCKELGITALHIKLRATGGNRTKTPGPGAQSALRALA 120
Query: 377 RSGMKIGRIEDVTPIPSDST 436
RSGMKIGRIEDVTPIPSDST
Sbjct: 121 RSGMKIGRIEDVTPIPSDST 140
>ref|XP_001001619.1| PREDICTED: similar to ribosomal protein S14 [Mus musculus]
Length = 151
Score = 267 bits (682), Expect = 2e-71
Identities = 135/140 (96%), Positives = 137/140 (97%)
Frame = +2
Query: 17 MAPRKGKEKKEEQVISLGPQVAEGENVFGVCHIFASFNDTFVHVTDLSGKETICRVTGGM 196
MAPRKGKEKKEEQVISLGPQVAEGENVFGVCHIFASFNDTFVHVTDLSGK+TICRVTG M
Sbjct: 1 MAPRKGKEKKEEQVISLGPQVAEGENVFGVCHIFASFNDTFVHVTDLSGKKTICRVTGRM 60
Query: 197 KVKADRDESSPYAAMLAAQDVAQRCKELGITALHIKLRATGGNRTKTPGPGAQSALRALA 376
KVKADRDESS YAAMLAAQDVAQRCKELGITA+HIKLRATGGNRTKTPGPGAQSALRALA
Sbjct: 61 KVKADRDESSLYAAMLAAQDVAQRCKELGITAVHIKLRATGGNRTKTPGPGAQSALRALA 120
Query: 377 RSGMKIGRIEDVTPIPSDST 436
SGMKIGRIEDVTPIPSDST
Sbjct: 121 CSGMKIGRIEDVTPIPSDST 140
>ref|XP_619341.1| PREDICTED: similar to ribosomal protein S14 isoform 1 [Mus
musculus]
Length = 151
Score = 267 bits (682), Expect = 2e-71
Identities = 135/140 (96%), Positives = 137/140 (97%)
Frame = +2
Query: 17 MAPRKGKEKKEEQVISLGPQVAEGENVFGVCHIFASFNDTFVHVTDLSGKETICRVTGGM 196
MAPRKGKEKKEEQVISLGPQVAEGENVFGVCHIFASFNDTFVHVTDLSGK+TICRVTG M
Sbjct: 1 MAPRKGKEKKEEQVISLGPQVAEGENVFGVCHIFASFNDTFVHVTDLSGKKTICRVTGRM 60
Query: 197 KVKADRDESSPYAAMLAAQDVAQRCKELGITALHIKLRATGGNRTKTPGPGAQSALRALA 376
KVKADRDESS YAAMLAAQDVAQRCKELGITA+HIKLRATGGNRTKTPGPGAQSALRALA
Sbjct: 61 KVKADRDESSLYAAMLAAQDVAQRCKELGITAVHIKLRATGGNRTKTPGPGAQSALRALA 120
Query: 377 RSGMKIGRIEDVTPIPSDST 436
SGMKIGRIEDVTPIPSDST
Sbjct: 121 CSGMKIGRIEDVTPIPSDST 140
>ref|XP_922266.1| PREDICTED: similar to ribosomal protein S14 [Mus musculus]
Length = 75
Score = 130 bits (328), Expect = 2e-30
Identities = 66/75 (88%), Positives = 68/75 (90%)
Frame = +2
Query: 200 VKADRDESSPYAAMLAAQDVAQRCKELGITALHIKLRATGGNRTKTPGPGAQSALRALAR 379
+KADRDESSPYAAMLAAQDVAQRCKELGITALHIKLRATGGNRTKTPGPGAQ ALR LAR
Sbjct: 1 MKADRDESSPYAAMLAAQDVAQRCKELGITALHIKLRATGGNRTKTPGPGAQPALRDLAR 60
Query: 380 SGMKIGRIEDVTPIP 424
SGMK +IE TP P
Sbjct: 61 SGMKTRQIEHATPSP 75
>ref|XP_899377.1| PREDICTED: similar to ribosomal protein S14 [Mus musculus]
Length = 75
Score = 130 bits (328), Expect = 2e-30
Identities = 66/75 (88%), Positives = 68/75 (90%)
Frame = +2
Query: 200 VKADRDESSPYAAMLAAQDVAQRCKELGITALHIKLRATGGNRTKTPGPGAQSALRALAR 379
+KADRDESSPYAAMLAAQDVAQRCKELGITALHIKLRATGGNRTKTPGPGAQ ALR LAR
Sbjct: 1 MKADRDESSPYAAMLAAQDVAQRCKELGITALHIKLRATGGNRTKTPGPGAQPALRDLAR 60
Query: 380 SGMKIGRIEDVTPIP 424
SGMK +IE TP P
Sbjct: 61 SGMKTRQIEHATPSP 75
Database: RefSeqMP
Posted date: Aug 2, 2006 12:58 AM
Number of letters in database: 21,768,885
Number of sequences in database: 45,328
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 25,971,344
Number of Sequences: 45328
Number of extensions: 691715
Number of successful extensions: 3947
Number of sequences better than 1.0e-05: 6
Number of HSP's better than 0.0 without gapping: 3196
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3877
length of database: 21,768,885
effective HSP length: 105
effective length of database: 17,009,445
effective search space used: 4694606820
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)