BLASTX 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= 20060611S-058035 (773 letters) Database: RefSeqSP 1040 sequences; 434,620 total letters Searching...done Score E Sequences producing significant alignments: (bits) Value Alignment gi|NP_999238.1| 20-beta-hydroxysteroid dehydrogenase [Sus scrofa] 413 e-117 Alignment gi|NP_999184.1| carbonyl reductase/NADP-retinol dehydrogenase [... 46 9e-07 Alignment gi|NP_999413.1| 11-beta hydroxysteroid dehydrogenase isoform 1 ... 44 6e-06 >ref|NP_999238.1| 20-beta-hydroxysteroid dehydrogenase [Sus scrofa] Length = 289 Score = 413 bits (1061), Expect = e-117 Identities = 208/218 (95%), Positives = 213/218 (97%) Frame = +2 Query: 116 MSSNTRVALVTGANKGIGFAIVRDLCRQFAGDVVLTARDVARGQAAVKQLQAEGLSPRFH 295 MSSNTRVALVTGANKGIGFAIVRDLCRQFAGDVVLTARDVARGQAAVKQLQAEGLSPRFH Sbjct: 1 MSSNTRVALVTGANKGIGFAIVRDLCRQFAGDVVLTARDVARGQAAVKQLQAEGLSPRFH 60 Query: 296 QLDIIDLQSIRALCDFLRKEYGGLDVLVNNAAIAFQLDNPTPFHIQAELTMKTNFMGTRN 475 QLDIIDLQSIRALCDFLRKEYGGLDVLVNNAAIAFQLDNPTPFHIQAELTMKTNFMGTRN Sbjct: 61 QLDIIDLQSIRALCDFLRKEYGGLDVLVNNAAIAFQLDNPTPFHIQAELTMKTNFMGTRN 120 Query: 476 VCTELLPLIKPQGRVVNVSSTEGVRALNECSPELQQKFKSETITEEELGGLMNKFVEDTK 655 VCTELLPLIKPQGRVVNVSSTEGVRALNECSPELQQKFKSETITEEEL GLMNKFVEDTK Sbjct: 121 VCTELLPLIKPQGRVVNVSSTEGVRALNECSPELQQKFKSETITEEELVGLMNKFVEDTK 180 Query: 656 NGVHRKEGWXDSTYGLTKIGVSVVVRIYARKLKKPKTG 769 NGVHRKEGW DSTYG+TKIGVSV+ RIYARKL++ + G Sbjct: 181 NGVHRKEGWSDSTYGVTKIGVSVLSRIYARKLREQRAG 218 >ref|NP_999184.1| carbonyl reductase/NADP-retinol dehydrogenase [Sus scrofa] Length = 260 Score = 46.2 bits (108), Expect = 9e-07 Identities = 32/88 (36%), Positives = 44/88 (50%) Frame = +2 Query: 131 RVALVTGANKGIGFAIVRDLCRQFAGDVVLTARDVARGQAAVKQLQAEGLSPRFHQLDII 310 +VALVT + GIG AI R L Q VV+++R V LQ EGLS + Sbjct: 15 KVALVTASTDGIGLAIARRLA-QDGAHVVVSSRKQENVDRTVATLQGEGLSVTGTVCHVG 73 Query: 311 DLQSIRALCDFLRKEYGGLDVLVNNAAI 394 + L +GG+D+LV+NAA+ Sbjct: 74 KAEDRERLVAMAVNLHGGVDILVSNAAV 101 >ref|NP_999413.1| 11-beta hydroxysteroid dehydrogenase isoform 1 [Sus scrofa] Length = 292 Score = 43.5 bits (101), Expect = 6e-06 Identities = 53/211 (25%), Positives = 82/211 (38%), Gaps = 2/211 (0%) Frame = +2 Query: 110 PAMSSNTRVALVTGANKGIGFAIVRDLCRQFAGDVVLTARDVARGQAAVKQLQAEGLSPR 289 P M +V +VTGA+KGIG + L R A VV + + L+ S Sbjct: 29 PEMLRGKKV-IVTGASKGIGREMAYHLARMGAHVVVTARSEETLKKVVSHSLELGASSAH 87 Query: 290 FHQLDIIDLQSIRALCDFLRKEYGGLDVLV-NNAAIAFQLDNPTPFHIQAELTMKTNFMG 466 + + D+ K GGLD+L+ N+ AF H+ +M+ NF+ Sbjct: 88 YVAGTMEDMTFAEQFVAKAGKLLGGLDMLILNHITQAFMTSVYDDIHL-VRRSMEVNFLS 146 Query: 467 TRNVCTELLPLIK-PQGRVVNVSSTEGVRALNECSPELQQKFKSETITEEELGGLMNKFV 643 + LP++K G +V VSS G A +P KF L G + Sbjct: 147 YVVLSVAALPMLKQSNGSIVVVSSQAGKMANPLVAPYSASKF--------ALDGFFSSIT 198 Query: 644 EDTKNGVHRKEGWXDSTYGLTKIGVSVVVRI 736 ++ Y +TK+ VS+ + I Sbjct: 199 KE---------------YSVTKVNVSITLCI 214 Database: RefSeqSP Posted date: Aug 1, 2006 7:14 PM Number of letters in database: 434,620 Number of sequences in database: 1040 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 779,866 Number of Sequences: 1040 Number of extensions: 21024 Number of successful extensions: 104 Number of sequences better than 1.0e-05: 3 Number of HSP's better than 0.0 without gapping: 90 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 99 length of database: 434,620 effective HSP length: 75 effective length of database: 356,620 effective search space used: 64904840 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
Search to RefSeqBP
BLASTX 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= 20060611S-058035 (773 letters) Database: RefSeqBP 33,508 sequences; 16,112,626 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Alignment gi|NP_001029685.1| carbonyl reductase 1 [Bos taurus] 338 3e-93 Alignment gi|NP_001030258.1| 20-beta-hydroxysteroid dehydrogenase-like [B... 338 3e-93 Alignment gi|XP_874747.1| PREDICTED: similar to Carbonyl reductase [NADPH... 330 6e-91 Alignment gi|XP_869745.1| PREDICTED: similar to carbonyl reductase 3 isof... 323 7e-89 Alignment gi|XP_868956.1| PREDICTED: similar to Carbonyl reductase [NADPH... 189 2e-48 Alignment gi|XP_878838.1| PREDICTED: similar to carbonyl reductase 3 isof... 147 9e-36 Alignment gi|XP_594165.2| PREDICTED: similar to carbonyl reductase 3 isof... 147 9e-36 Alignment gi|XP_584642.2| PREDICTED: similar to retinol dehydrogenase 11 ... 66 3e-11 Alignment gi|NP_899207.1| double substrate-specificity short chain dehydr... 61 1e-09 Alignment gi|XP_592820.2| PREDICTED: similar to retinol dehydrogenase 11 ... 60 2e-09 >ref|NP_001029685.1| carbonyl reductase 1 [Bos taurus] Length = 277 Score = 338 bits (867), Expect = 3e-93 Identities = 173/218 (79%), Positives = 192/218 (88%) Frame = +2 Query: 116 MSSNTRVALVTGANKGIGFAIVRDLCRQFAGDVVLTARDVARGQAAVKQLQAEGLSPRFH 295 MSS+ VALVTGANKGIGF IVRDLCR+F+GDVVLTARD ARG+AAV+QLQAEGLSP FH Sbjct: 1 MSSSNCVALVTGANKGIGFVIVRDLCRRFSGDVVLTARDEARGRAAVQQLQAEGLSPLFH 60 Query: 296 QLDIIDLQSIRALCDFLRKEYGGLDVLVNNAAIAFQLDNPTPFHIQAELTMKTNFMGTRN 475 QLDI D QSIRAL DFLRKEYGGLDVLVNNA IAF+ + TPFHIQAE+TMKTNF GTR+ Sbjct: 61 QLDIDDRQSIRALRDFLRKEYGGLDVLVNNAGIAFKTADTTPFHIQAEVTMKTNFFGTRD 120 Query: 476 VCTELLPLIKPQGRVVNVSSTEGVRALNECSPELQQKFKSETITEEELGGLMNKFVEDTK 655 VCTELLPLIKPQGRVVNVSS V +L +CS ELQQKF+SETITEEEL GLMNKFVEDTK Sbjct: 121 VCTELLPLIKPQGRVVNVSSFVSVNSLKKCSRELQQKFRSETITEEELVGLMNKFVEDTK 180 Query: 656 NGVHRKEGWXDSTYGLTKIGVSVVVRIYARKLKKPKTG 769 NGVHRKEGW D+ YG+TKIGV+V+ RI+ARKL + + G Sbjct: 181 NGVHRKEGWPDTAYGVTKIGVTVLSRIHARKLSEQRGG 218 >ref|NP_001030258.1| 20-beta-hydroxysteroid dehydrogenase-like [Bos taurus] Length = 286 Score = 338 bits (867), Expect = 3e-93 Identities = 172/219 (78%), Positives = 193/219 (88%), Gaps = 1/219 (0%) Frame = +2 Query: 116 MSSNTRVALVTGANKGIGFAIVRDLCRQFAGDVVLTARDVARGQAAVKQLQAEGLSPRFH 295 MSS+TRVALVTGANKG+GFAIVRDLCR+F GDVVLTARD ARG+AAV+QLQAEGLSPRFH Sbjct: 1 MSSSTRVALVTGANKGLGFAIVRDLCRRFPGDVVLTARDEARGRAAVQQLQAEGLSPRFH 60 Query: 296 QLDIIDLQSIRALCDFLRKEYGGLDVLVNNAAIAFQLDNPTPFHIQAELTMKTNFMGTRN 475 QLDI DLQSI AL DFLRKEYGGLDVLVNNAAIAFQL +PTP I+AE+TMKTNF GTR+ Sbjct: 61 QLDITDLQSIHALRDFLRKEYGGLDVLVNNAAIAFQLSDPTPTPIKAEMTMKTNFFGTRD 120 Query: 476 VCTELLPLIKPQGRVVNVSSTEGVRALNECSPELQQKFKSETITEEELGGLMNKFVEDTK 655 +CTELLPL+KPQGRVVN+SS G +AL CSPELQQK +SETITEEEL GLMNKFVEDTK Sbjct: 121 ICTELLPLMKPQGRVVNMSSGWGFKALESCSPELQQKLRSETITEEELVGLMNKFVEDTK 180 Query: 656 NGVHRKEGWXDST-YGLTKIGVSVVVRIYARKLKKPKTG 769 NGVHRKEGW D+ YG+ KIG++ + RI ARKL + + G Sbjct: 181 NGVHRKEGWPDNNIYGVAKIGITALSRIQARKLSEQRGG 219 >ref|XP_874747.1| PREDICTED: similar to Carbonyl reductase [NADPH] 1 (NADPH-dependent carbonyl reductase 1) (Prostaglandin-E(2) 9-reductase) (Prostaglandin 9-ketoreductase) (15-hydroxyprostaglandin dehydrogenase [NADP+]) [Bos taurus] Length = 277 Score = 330 bits (847), Expect = 6e-91 Identities = 169/218 (77%), Positives = 191/218 (87%) Frame = +2 Query: 116 MSSNTRVALVTGANKGIGFAIVRDLCRQFAGDVVLTARDVARGQAAVKQLQAEGLSPRFH 295 MSS+TRVALVTGANKG+GFAIVR L F GDVVLTA D A+G+AAV+QLQA+GLSP FH Sbjct: 1 MSSSTRVALVTGANKGLGFAIVRALAGGFQGDVVLTAPDEAQGRAAVQQLQAQGLSPLFH 60 Query: 296 QLDIIDLQSIRALCDFLRKEYGGLDVLVNNAAIAFQLDNPTPFHIQAELTMKTNFMGTRN 475 QLDI D QSIRAL DFLRKEYGGLDVLVNNA IAF+ + TPFHIQAE+TMKTNF GTR+ Sbjct: 61 QLDIDDRQSIRALRDFLRKEYGGLDVLVNNAGIAFKTADTTPFHIQAEVTMKTNFFGTRD 120 Query: 476 VCTELLPLIKPQGRVVNVSSTEGVRALNECSPELQQKFKSETITEEELGGLMNKFVEDTK 655 VCTELLPLIKPQGRVVNVSS+ V +L +CSPELQQKF+SETITEEEL GLMNKFVEDTK Sbjct: 121 VCTELLPLIKPQGRVVNVSSSVSVSSLKKCSPELQQKFQSETITEEELVGLMNKFVEDTK 180 Query: 656 NGVHRKEGWXDSTYGLTKIGVSVVVRIYARKLKKPKTG 769 NGVHRKEGW D+ YG+TKIGV+V+ RI+ARK+ + + G Sbjct: 181 NGVHRKEGWPDTAYGVTKIGVTVLSRIHARKMSEQRGG 218 >ref|XP_869745.1| PREDICTED: similar to carbonyl reductase 3 isoform 2 [Bos taurus] Length = 277 Score = 323 bits (829), Expect = 7e-89 Identities = 160/216 (74%), Positives = 189/216 (87%) Frame = +2 Query: 116 MSSNTRVALVTGANKGIGFAIVRDLCRQFAGDVVLTARDVARGQAAVKQLQAEGLSPRFH 295 MSS TRVALVTGANKGIGFAI RDLCR+F GDVVLTARD ARG+AAV+QLQAEGLSPRFH Sbjct: 1 MSSYTRVALVTGANKGIGFAIARDLCREFPGDVVLTARDKARGRAAVQQLQAEGLSPRFH 60 Query: 296 QLDIIDLQSIRALCDFLRKEYGGLDVLVNNAAIAFQLDNPTPFHIQAELTMKTNFMGTRN 475 QLDI DLQSIRAL DFLRKEYGGL+VLVNNA IAF+ D+PTPF IQAE+T+KTNF TRN Sbjct: 61 QLDIDDLQSIRALRDFLRKEYGGLNVLVNNAGIAFKTDDPTPFDIQAEMTLKTNFFATRN 120 Query: 476 VCTELLPLIKPQGRVVNVSSTEGVRALNECSPELQQKFKSETITEEELGGLMNKFVEDTK 655 VCTELLP++KP GRVVNVSS++G +AL CS +LQ+KF+ ET+TEE+L LM KFVEDTK Sbjct: 121 VCTELLPIVKPHGRVVNVSSSQGSQALENCSEDLQEKFRCETLTEEDLVDLMKKFVEDTK 180 Query: 656 NGVHRKEGWXDSTYGLTKIGVSVVVRIYARKLKKPK 763 N VH +EGW +S YG++K+GV+V+ RI AR+L++ + Sbjct: 181 NEVHEREGWPNSAYGVSKLGVTVLSRILARRLEEKR 216 >ref|XP_868956.1| PREDICTED: similar to Carbonyl reductase [NADPH] 1 (NADPH-dependent carbonyl reductase 1) (Prostaglandin-E(2) 9-reductase) (Prostaglandin 9-ketoreductase) (15-hydroxyprostaglandin dehydrogenase [NADP+]) [Bos taurus] Length = 327 Score = 189 bits (480), Expect = 2e-48 Identities = 112/212 (52%), Positives = 135/212 (63%) Frame = +2 Query: 134 VALVTGANKGIGFAIVRDLCRQFAGDVVLTARDVARGQAAVKQLQAEGLSPRFHQLDIID 313 +ALVTGANKGIG A++ G R +AA + FH+ + Sbjct: 1 MALVTGANKGIGLAVL------LLGGAGTGDRGCIHIRAAPRGSARRPPPLSFHEWRPLG 54 Query: 314 LQSIRALCDFLRKEYGGLDVLVNNAAIAFQLDNPTPFHIQAELTMKTNFMGTRNVCTELL 493 G+ +AA + TPF IQAE+TMKTNF GTR VCTELL Sbjct: 55 -----------GSPAAGISTHWISAA------DTTPFPIQAEVTMKTNFFGTRVVCTELL 97 Query: 494 PLIKPQGRVVNVSSTEGVRALNECSPELQQKFKSETITEEELGGLMNKFVEDTKNGVHRK 673 PL+KPQGRVVNVSS+ V +L +CSPELQQKF+SETITEEEL GLMNKFVEDTKNGVHRK Sbjct: 98 PLLKPQGRVVNVSSSVSVTSLKKCSPELQQKFQSETITEEELVGLMNKFVEDTKNGVHRK 157 Query: 674 EGWXDSTYGLTKIGVSVVVRIYARKLKKPKTG 769 EGW D+ YG+TKIGV+V+ RI+ARKL + + G Sbjct: 158 EGWRDTAYGVTKIGVTVLFRIHARKLSEQRGG 189 >ref|XP_878838.1| PREDICTED: similar to carbonyl reductase 3 isoform 3 [Bos taurus] Length = 169 Score = 147 bits (371), Expect = 9e-36 Identities = 67/108 (62%), Positives = 90/108 (83%) Frame = +2 Query: 440 LTMKTNFMGTRNVCTELLPLIKPQGRVVNVSSTEGVRALNECSPELQQKFKSETITEEEL 619 +T+KTNF TRNVCTELLP++KP GRVVNVSS++G +AL CS +LQ+KF+ ET+TEE+L Sbjct: 1 MTLKTNFFATRNVCTELLPIVKPHGRVVNVSSSQGSQALENCSEDLQEKFRCETLTEEDL 60 Query: 620 GGLMNKFVEDTKNGVHRKEGWXDSTYGLTKIGVSVVVRIYARKLKKPK 763 LM KFVEDTKN VH +EGW +S YG++K+GV+V+ RI AR+L++ + Sbjct: 61 VDLMKKFVEDTKNEVHEREGWPNSAYGVSKLGVTVLSRILARRLEEKR 108 >ref|XP_594165.2| PREDICTED: similar to carbonyl reductase 3 isoform 1 [Bos taurus] Length = 169 Score = 147 bits (371), Expect = 9e-36 Identities = 67/108 (62%), Positives = 90/108 (83%) Frame = +2 Query: 440 LTMKTNFMGTRNVCTELLPLIKPQGRVVNVSSTEGVRALNECSPELQQKFKSETITEEEL 619 +T+KTNF TRNVCTELLP++KP GRVVNVSS++G +AL CS +LQ+KF+ ET+TEE+L Sbjct: 1 MTLKTNFFATRNVCTELLPIVKPHGRVVNVSSSQGSQALENCSEDLQEKFRCETLTEEDL 60 Query: 620 GGLMNKFVEDTKNGVHRKEGWXDSTYGLTKIGVSVVVRIYARKLKKPK 763 LM KFVEDTKN VH +EGW +S YG++K+GV+V+ RI AR+L++ + Sbjct: 61 VDLMKKFVEDTKNEVHEREGWPNSAYGVSKLGVTVLSRILARRLEEKR 108 >ref|XP_584642.2| PREDICTED: similar to retinol dehydrogenase 11 (predicted) [Bos taurus] Length = 330 Score = 65.9 bits (159), Expect = 3e-11 Identities = 51/139 (36%), Positives = 76/139 (54%), Gaps = 4/139 (2%) Frame = +2 Query: 131 RVALVTGANKGIGFAIVRDLCRQFAGDVVLTARDVARGQAAVKQLQAEGLSPR--FHQLD 304 + A+VTGAN GIG A+ ++L + A V+L R RGQ A+ ++QA S R ++D Sbjct: 50 KTAVVTGANSGIGKAVSQELAHRGA-RVILACRSRERGQQALAEIQATSKSNRLLLGEVD 108 Query: 305 IIDLQSIRALCDFLRKEYGGLDVLVNNAAIAFQLDNPTPFHIQAELTMKTNFMGTRNVCT 484 + + SIR+ L +E + +LVNNAA+ TP + +LT TN+ G + Sbjct: 109 LSSMASIRSFAQRLLQECPEIHLLVNNAAVCGFPTTLTPEGL--DLTFATNYTGPFLLTN 166 Query: 485 ELLPLIKPQG--RVVNVSS 535 L ++ G RVVNVSS Sbjct: 167 LLQGALQRAGSARVVNVSS 185 >ref|NP_899207.1| double substrate-specificity short chain dehydrogenase/reductase 2 [Bos taurus] Length = 316 Score = 60.8 bits (146), Expect = 1e-09 Identities = 46/139 (33%), Positives = 74/139 (53%), Gaps = 4/139 (2%) Frame = +2 Query: 131 RVALVTGANKGIGFAIVRDLCRQFAGDVVLTARDVARGQAAVKQLQAEGLSPRF--HQLD 304 +V ++TGAN GIG R+L R+ A V + RDV +G++A ++QA+ + + +LD Sbjct: 40 KVVVITGANTGIGKETARELARRGAR-VYIACRDVLKGESAASEIQADTKNSQVLVRKLD 98 Query: 305 IIDLQSIRALCDFLRKEYGGLDVLVNNAAIAFQLDNPTPFHIQAELTMKTNFMGTRNVCT 484 + D +SIRA + E L +L+NNA + + T + L + N +G + Sbjct: 99 LSDTKSIRAFAEGFLAEEKQLHILINNAGVMLCPYSKTADGFETHLAV--NHLGHFLLTH 156 Query: 485 ELLPLIKPQ--GRVVNVSS 535 LL +K RVVN+SS Sbjct: 157 LLLGRLKESAPARVVNLSS 175 >ref|XP_592820.2| PREDICTED: similar to retinol dehydrogenase 11 (predicted) [Bos taurus] Length = 377 Score = 59.7 bits (143), Expect = 2e-09 Identities = 51/139 (36%), Positives = 69/139 (49%), Gaps = 4/139 (2%) Frame = +2 Query: 131 RVALVTGANKGIGFAIVRDLCRQFAGDVVLTARDVARGQAAVKQLQAEGLSPR--FHQLD 304 R A+VTGAN GIG +L R+ A VVL R RG+AA L+ E + F LD Sbjct: 37 RTAVVTGANSGIGKMTALELARRGAR-VVLACRSRERGEAAAFDLRQESGNNEVIFMALD 95 Query: 305 IIDLQSIRALCDFLRKEYGGLDVLVNNAAIAFQLDNPTPFHIQAELTMKTNFMGTRNVCT 484 + L S+RA LD+L++NA I+ PF+ L ++ N +G + Sbjct: 96 LASLASVRAFATAFLSSEPRLDILIHNAGISSCGRTREPFN----LLLRVNHIGPFLLTH 151 Query: 485 ELLPLIKPQ--GRVVNVSS 535 LLP +K RVV VSS Sbjct: 152 LLLPRLKTSAPSRVVVVSS 170 Database: RefSeqBP Posted date: Aug 1, 2006 7:14 PM Number of letters in database: 16,112,626 Number of sequences in database: 33,508 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 29,120,030 Number of Sequences: 33508 Number of extensions: 823871 Number of successful extensions: 4452 Number of sequences better than 1.0e-05: 10 Number of HSP's better than 0.0 without gapping: 3710 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4385 length of database: 16,112,626 effective HSP length: 99 effective length of database: 12,795,334 effective search space used: 2021662772 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
Search to RefSeqCP
BLASTX 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= 20060611S-058035 (773 letters) Database: RefSeqCP 33,732 sequences; 19,266,565 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Alignment gi|XP_852675.1| PREDICTED: similar to Carbonyl reductase [NADPH... 344 6e-95 Alignment gi|XP_544873.2| PREDICTED: similar to carbonyl reductase 3 [Can... 317 1e-86 Alignment gi|XP_537903.1| PREDICTED: similar to Carbonyl reductase [NADPH... 309 2e-84 Alignment gi|XP_535589.2| PREDICTED: similar to Carbonyl reductase [NADPH... 309 2e-84 Alignment gi|XP_533000.2| PREDICTED: similar to Retinol dehydrogenase 12 ... 73 3e-13 Alignment gi|XP_548293.2| PREDICTED: similar to retinol dehydrogenase 11 ... 59 4e-09 Alignment gi|XP_547866.2| PREDICTED: similar to retinol dehydrogenase 12 ... 59 5e-09 Alignment gi|XP_854127.1| PREDICTED: similar to Retinol dehydrogenase 13 ... 58 1e-08 Alignment gi|XP_547738.2| PREDICTED: similar to dehydrogenase/reductase (... 57 2e-08 Alignment gi|XP_540096.2| PREDICTED: similar to retinol dehydrogenase 14 ... 55 6e-08 >ref|XP_852675.1| PREDICTED: similar to Carbonyl reductase [NADPH] 1 (NADPH-dependent carbonyl reductase 1) (Prostaglandin-E(2) 9-reductase) (Prostaglandin 9-ketoreductase) (15-hydroxyprostaglandin dehydrogenase [NADP+]) [Canis familiaris] Length = 277 Score = 344 bits (882), Expect = 6e-95 Identities = 173/216 (80%), Positives = 193/216 (89%) Frame = +2 Query: 116 MSSNTRVALVTGANKGIGFAIVRDLCRQFAGDVVLTARDVARGQAAVKQLQAEGLSPRFH 295 MS+ +RVALVTGANKGIGFAI R+LCRQF+GDVVLTARD ARG+AAV+QLQAEGLSPRFH Sbjct: 1 MSAASRVALVTGANKGIGFAIARELCRQFSGDVVLTARDEARGRAAVQQLQAEGLSPRFH 60 Query: 296 QLDIIDLQSIRALCDFLRKEYGGLDVLVNNAAIAFQLDNPTPFHIQAELTMKTNFMGTRN 475 LDI DLQSIRAL DFLRKEYGGLDVLVNNA IAF+ ++PTPFHIQAE+TMKTNF GTR+ Sbjct: 61 LLDIDDLQSIRALRDFLRKEYGGLDVLVNNAGIAFKTNDPTPFHIQAEVTMKTNFFGTRD 120 Query: 476 VCTELLPLIKPQGRVVNVSSTEGVRALNECSPELQQKFKSETITEEELGGLMNKFVEDTK 655 VCTELLPL+KPQGRVVNVSS VRAL CSPELQQKF+SE ITEEEL GLMNKFVEDTK Sbjct: 121 VCTELLPLMKPQGRVVNVSSVVSVRALKSCSPELQQKFRSEAITEEELVGLMNKFVEDTK 180 Query: 656 NGVHRKEGWXDSTYGLTKIGVSVVVRIYARKLKKPK 763 GVHR EGW D+ YG+TKIGV+V+ RI+ARKL + + Sbjct: 181 KGVHRNEGWPDNAYGVTKIGVTVLSRIHARKLSEQR 216 >ref|XP_544873.2| PREDICTED: similar to carbonyl reductase 3 [Canis familiaris] Length = 484 Score = 317 bits (811), Expect = 1e-86 Identities = 160/227 (70%), Positives = 189/227 (83%) Frame = +2 Query: 83 SPRQSTYTTPAMSSNTRVALVTGANKGIGFAIVRDLCRQFAGDVVLTARDVARGQAAVKQ 262 SPR PAMSS +RVALVTGAN+GIGFAI R+LCRQF+GDVVLTARD ARG+AAV+Q Sbjct: 197 SPRAPGPPLPAMSSCSRVALVTGANRGIGFAIARELCRQFSGDVVLTARDEARGRAAVQQ 256 Query: 263 LQAEGLSPRFHQLDIIDLQSIRALCDFLRKEYGGLDVLVNNAAIAFQLDNPTPFHIQAEL 442 LQAEGLSPRFH LDI DLQSIRAL DFLRKEYGGL+VLVNNA IAF+ D+PTPF IQAE+ Sbjct: 257 LQAEGLSPRFHLLDIDDLQSIRALRDFLRKEYGGLNVLVNNAGIAFKPDDPTPFDIQAEI 316 Query: 443 TMKTNFMGTRNVCTELLPLIKPQGRVVNVSSTEGVRALNECSPELQQKFKSETITEEELG 622 T+KTNF TRNVC ELLP+IKP GRVVN+SS EG +AL CS +LQ+KF+ ET+TEE+L Sbjct: 317 TLKTNFFATRNVCNELLPIIKPHGRVVNISSLEGSKALENCSADLQKKFQCETLTEEDLV 376 Query: 623 GLMNKFVEDTKNGVHRKEGWXDSTYGLTKIGVSVVVRIYARKLKKPK 763 LM KFVEDT N VH +EGW +S YG++K+GV+V+ RI A +L + + Sbjct: 377 DLMKKFVEDTSNEVHEREGWPNSAYGVSKLGVTVLSRILAWRLDEKR 423 >ref|XP_537903.1| PREDICTED: similar to Carbonyl reductase [NADPH] 1 (NADPH-dependent carbonyl reductase 1) (Prostaglandin-E(2) 9-reductase) (Prostaglandin 9-ketoreductase) (15-hydroxyprostaglandin dehydrogenase [NADP+]) [Canis familiaris] Length = 296 Score = 309 bits (792), Expect = 2e-84 Identities = 156/219 (71%), Positives = 183/219 (83%), Gaps = 3/219 (1%) Frame = +2 Query: 116 MSSNTRVALVTGANKGIGFAIVRDLCRQFAGDVVLTARDVARGQAAVKQLQAEGLSPRFH 295 MS RVA+VTGANKG+GFAI RDLCR F GDV+LT+RD ARG+AAV+ L+AEGLSPRFH Sbjct: 1 MSLALRVAVVTGANKGLGFAITRDLCRNFPGDVILTSRDEARGRAAVQHLKAEGLSPRFH 60 Query: 296 QLDIIDLQSIRALCDFLRKEYGGLDVLVNNAAIAFQLDNPTPFHIQAELTMKTNFMGTRN 475 LDI +LQSIRAL DFL +EYGGLDVLVNNA I F D+PTP HIQAE+T+KTNF GTR+ Sbjct: 61 LLDIDNLQSIRALRDFLWEEYGGLDVLVNNAGIVFTPDDPTPLHIQAEVTLKTNFFGTRD 120 Query: 476 VCTELLPLIKPQGRVVNVSSTEGVRALNECSPELQQKFKSETITEEELGGLMNKFVEDTK 655 +CTELLPL+KPQGRVVNVSS AL +CSPELQQKF SETITEEELG LMNKF+ED K Sbjct: 121 ICTELLPLVKPQGRVVNVSSIMSFLALKQCSPELQQKFTSETITEEELGMLMNKFLEDVK 180 Query: 656 NGVHRKEGWXD---STYGLTKIGVSVVVRIYARKLKKPK 763 NGVH+KEGW D + Y ++K+GV+V+ RI+ARKL + + Sbjct: 181 NGVHKKEGWPDIKIAAYSVSKMGVTVLSRIHARKLSEQR 219 >ref|XP_535589.2| PREDICTED: similar to Carbonyl reductase [NADPH] 1 (NADPH-dependent carbonyl reductase 1) (Prostaglandin-E(2) 9-reductase) (Prostaglandin 9-ketoreductase) (15-hydroxyprostaglandin dehydrogenase [NADP+]) [Canis familiaris] Length = 292 Score = 309 bits (791), Expect = 2e-84 Identities = 158/221 (71%), Positives = 182/221 (82%), Gaps = 3/221 (1%) Frame = +2 Query: 116 MSSNTRVALVTGANKGIGFAIVRDLCRQFAGDVVLTARDVARGQAAVKQLQAEGLSPRFH 295 MSS RVA+VTGANKG+GFAI+RDLCR F+GDVVLTARD ARG+AAV+QLQ++GLSPRFH Sbjct: 1 MSSAPRVAVVTGANKGLGFAIMRDLCRNFSGDVVLTARDEARGRAAVQQLQSKGLSPRFH 60 Query: 296 QLDIIDLQSIRALCDFLRKEYGGLDVLVNNAAIAFQLDNPTPFHIQAELTMKTNFMGTRN 475 LDI DLQSI L DFL KEY GLDVLVNNA I F +PTP IQAE+T+KTNF GTRN Sbjct: 61 LLDIDDLQSICTLRDFLCKEYRGLDVLVNNAGINFDTGDPTPLPIQAEVTLKTNFFGTRN 120 Query: 476 VCTELLPLIKPQGRVVNVSSTEGVRALNECSPELQQKFKSETITEEELGGLMNKFVEDTK 655 VC ELLPL+KPQGRVVNVSS G L +CSPELQQKF SE ITEEELG LMNKFVED K Sbjct: 121 VCRELLPLMKPQGRVVNVSSVMGFVTLKQCSPELQQKFTSEAITEEELGMLMNKFVEDVK 180 Query: 656 NGVHRKEGWXDS---TYGLTKIGVSVVVRIYARKLKKPKTG 769 NGVH+KEGW D TYG++K+G++++ RI+ARKL + + G Sbjct: 181 NGVHKKEGWPDMKLVTYGISKMGITILSRIHARKLSEQRRG 221 >ref|XP_533000.2| PREDICTED: similar to Retinol dehydrogenase 12 [Canis familiaris] Length = 596 Score = 72.8 bits (177), Expect = 3e-13 Identities = 53/139 (38%), Positives = 82/139 (58%), Gaps = 4/139 (2%) Frame = +2 Query: 131 RVALVTGANKGIGFAIVRDLCRQFAGDVVLTARDVARGQAAVKQLQ--AEGLSPRFHQLD 304 + A+VTGAN GIG A+ ++L R+ A V+L R+ RGQ A+ ++Q ++G Q+D Sbjct: 316 KTAVVTGANSGIGKAVCQELARRGAR-VILACRNWERGQKALAEIQVASKGTCLLLGQVD 374 Query: 305 IIDLQSIRALCDFLRKEYGGLDVLVNNAAIAFQLDNPTPFHIQAELTMKTNFMGTRNVCT 484 + + SIR+ +L +EY + +LVNNAAI+ TP + +LT TN++G + Sbjct: 375 LSSMASIRSFARWLLQEYPEIHLLVNNAAISGFPKTLTPEGL--DLTFATNYVGPFLLTN 432 Query: 485 ELLPLIKPQG--RVVNVSS 535 L ++ G RVVNVSS Sbjct: 433 LLQGALQRAGSARVVNVSS 451 >ref|XP_548293.2| PREDICTED: similar to retinol dehydrogenase 11 (predicted) [Canis familiaris] Length = 377 Score = 59.3 bits (142), Expect = 4e-09 Identities = 51/139 (36%), Positives = 69/139 (49%), Gaps = 4/139 (2%) Frame = +2 Query: 131 RVALVTGANKGIGFAIVRDLCRQFAGDVVLTARDVARGQAAVKQLQAEGLSPR--FHQLD 304 R A+VTGAN GIG +L R+ A VVL R RG+AA L+ E + F LD Sbjct: 37 RTAVVTGANSGIGKMTALELARRGAR-VVLACRSRERGEAAAFDLRQESGNNEVIFMALD 95 Query: 305 IIDLQSIRALCDFLRKEYGGLDVLVNNAAIAFQLDNPTPFHIQAELTMKTNFMGTRNVCT 484 + L S+RA LD+L++NA I+ PF+ L ++ N +G + Sbjct: 96 LASLASVRAFATAFLSSEPRLDILIHNAGISSCGRTHKPFN----LLLRVNHIGPFLLTH 151 Query: 485 ELLPLIK--PQGRVVNVSS 535 LLP +K RVV VSS Sbjct: 152 LLLPRLKTCAPSRVVVVSS 170 >ref|XP_547866.2| PREDICTED: similar to retinol dehydrogenase 12 (all-trans and 9-cis) [Canis familiaris] Length = 303 Score = 58.9 bits (141), Expect = 5e-09 Identities = 45/139 (32%), Positives = 74/139 (53%), Gaps = 4/139 (2%) Frame = +2 Query: 131 RVALVTGANKGIGFAIVRDLCRQFAGDVVLTARDVARGQAAVKQLQAEGLSPRF--HQLD 304 +V ++TGAN GIG R+L R+ A V + RDV +G++A +++A+ + + +LD Sbjct: 27 KVVVITGANTGIGKETARELARRGAR-VYIACRDVLKGESAASEIRADTKNSQVLVRKLD 85 Query: 305 IIDLQSIRALCDFLRKEYGGLDVLVNNAAIAFQLDNPTPFHIQAELTMKTNFMGTRNVCT 484 + D +SIRA + E L +L+NNA + + T + L + N +G + Sbjct: 86 LSDTKSIRAFAEGFLAEEKQLHILINNAGVMMCPYSKTADGFETHLGV--NHLGHFLLTH 143 Query: 485 ELLPLIKPQ--GRVVNVSS 535 LL +K RVVN+SS Sbjct: 144 LLLERLKESTPARVVNLSS 162 >ref|XP_854127.1| PREDICTED: similar to Retinol dehydrogenase 13 [Canis familiaris] Length = 334 Score = 57.8 bits (138), Expect = 1e-08 Identities = 44/139 (31%), Positives = 74/139 (53%), Gaps = 4/139 (2%) Frame = +2 Query: 131 RVALVTGANKGIGFAIVRDLCRQFAGDVVLTARDVARGQAAVKQLQAEGLSPRFH--QLD 304 + +VTGAN GIG +L R+ G+++L RD+ + +AA K+++ E L+ R LD Sbjct: 39 KTVIVTGANTGIGKQTALELARR-GGNIILACRDMEKCEAAAKEIRGETLNHRVSAWHLD 97 Query: 305 IIDLQSIRALCDFLRKEYGGLDVLVNNAAI--AFQLDNPTPFHIQAELTMKTNFMGTRNV 478 + L+SIR + +E + +LVNNAA+ F +Q + +F+ T N+ Sbjct: 98 LASLKSIREFAAKIIEEEEQVHILVNNAAVMRCPHWTTKDGFEMQFGVNHLGHFLLT-NL 156 Query: 479 CTELLPLIKPQGRVVNVSS 535 + L P R++N+SS Sbjct: 157 LLDKLKASAP-SRIINLSS 174 >ref|XP_547738.2| PREDICTED: similar to dehydrogenase/reductase (SDR family) member 2 isoform 2 [Canis familiaris] Length = 370 Score = 56.6 bits (135), Expect = 2e-08 Identities = 39/88 (44%), Positives = 48/88 (54%) Frame = +2 Query: 131 RVALVTGANKGIGFAIVRDLCRQFAGDVVLTARDVARGQAAVKQLQAEGLSPRFHQLDII 310 RVA+VTGA GIGFAI R L R A VV+++R AV LQ EGLS + Sbjct: 126 RVAVVTGATDGIGFAIARRLARDGA-HVVVSSRKQHNVDRAVAALQGEGLSVTGTVCHVG 184 Query: 311 DLQSIRALCDFLRKEYGGLDVLVNNAAI 394 + L + + YGGLD LV NAA+ Sbjct: 185 KAEDRERLVATVLEHYGGLDFLVCNAAV 212 >ref|XP_540096.2| PREDICTED: similar to retinol dehydrogenase 14 (all-trans and 9-cis) isoform 1 [Canis familiaris] Length = 336 Score = 55.5 bits (132), Expect = 6e-08 Identities = 53/153 (34%), Positives = 73/153 (47%), Gaps = 18/153 (11%) Frame = +2 Query: 131 RVALVTGANKGIGFAIVRDLCRQFAGDVVLTARDVARGQAAVKQL-----QAEGLSPR-- 289 + L+TGAN G+G A L R V++ RD AR + A QL QA G P Sbjct: 44 KTVLITGANSGLGRATAAALLR-LGARVIMGCRDRARAEEAAGQLRRELRQAGGREPGSD 102 Query: 290 --------FHQLDIIDLQSIRALCDFLRKEYGGLDVLVNNAAIAFQ---LDNPTPFHIQA 436 +LD+ L+S+RA C + +E LDVL+NNA I FQ + F +Q Sbjct: 103 VGAAGELVVRELDLASLRSVRAFCQEVLQEEPRLDVLINNAGI-FQCPYMKTEDGFEMQF 161 Query: 437 ELTMKTNFMGTRNVCTELLPLIKPQGRVVNVSS 535 + +F+ T N+ LL P R+V VSS Sbjct: 162 GVNHLGHFLLT-NLLLGLLKNSAP-SRIVVVSS 192 Database: RefSeqCP Posted date: Aug 1, 2006 9:25 PM Number of letters in database: 19,266,565 Number of sequences in database: 33,732 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 34,037,001 Number of Sequences: 33732 Number of extensions: 956315 Number of successful extensions: 5081 Number of sequences better than 1.0e-05: 10 Number of HSP's better than 0.0 without gapping: 4138 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5015 length of database: 19,266,565 effective HSP length: 101 effective length of database: 15,859,633 effective search space used: 2474102748 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
Search to RefSeqHP
BLASTX 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= 20060611S-058035 (773 letters) Database: RefSeqHP 39,411 sequences; 17,774,539 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Alignment gi|NP_001748.1| carbonyl reductase 1 [Homo sapiens] 348 3e-96 Alignment gi|NP_001227.1| carbonyl reductase 3 [Homo sapiens] 308 4e-84 Alignment gi|XP_371503.3| PREDICTED: similar to short-chain dehydrogenase... 58 8e-09 Alignment gi|XP_947127.1| PREDICTED: similar to short-chain dehydrogenase... 58 8e-09 Alignment gi|NP_065956.1| retinol dehydrogenase 14 (all-trans and 9-cis) ... 57 2e-08 Alignment gi|NP_689656.1| retinol dehydrogenase 12 (all-trans and 9-cis) ... 56 4e-08 Alignment gi|NP_057110.2| androgen-regulated short-chain dehydrogenase/re... 55 6e-08 Alignment gi|XP_950347.1| PREDICTED: similar to dehydrogenase/reductase (... 54 1e-07 Alignment gi|NP_932349.1| dehydrogenase/reductase (SDR family) member 4 l... 52 4e-07 Alignment gi|XP_950350.1| PREDICTED: similar to dehydrogenase/reductase (... 52 4e-07 >ref|NP_001748.1| carbonyl reductase 1 [Homo sapiens] Length = 277 Score = 348 bits (893), Expect = 3e-96 Identities = 177/218 (81%), Positives = 192/218 (88%) Frame = +2 Query: 116 MSSNTRVALVTGANKGIGFAIVRDLCRQFAGDVVLTARDVARGQAAVKQLQAEGLSPRFH 295 MSS VALVTG NKGIG AIVRDLCR F+GDVVLTARDV RGQAAV+QLQAEGLSPRFH Sbjct: 1 MSSGIHVALVTGGNKGIGLAIVRDLCRLFSGDVVLTARDVTRGQAAVQQLQAEGLSPRFH 60 Query: 296 QLDIIDLQSIRALCDFLRKEYGGLDVLVNNAAIAFQLDNPTPFHIQAELTMKTNFMGTRN 475 QLDI DLQSIRAL DFLRKEYGGLDVLVNNA IAF++ +PTPFHIQAE+TMKTNF GTR+ Sbjct: 61 QLDIDDLQSIRALRDFLRKEYGGLDVLVNNAGIAFKVADPTPFHIQAEVTMKTNFFGTRD 120 Query: 476 VCTELLPLIKPQGRVVNVSSTEGVRALNECSPELQQKFKSETITEEELGGLMNKFVEDTK 655 VCTELLPLIKPQGRVVNVSS VRAL CSPELQQKF+SETITEEEL GLMNKFVEDTK Sbjct: 121 VCTELLPLIKPQGRVVNVSSIMSVRALKSCSPELQQKFRSETITEEELVGLMNKFVEDTK 180 Query: 656 NGVHRKEGWXDSTYGLTKIGVSVVVRIYARKLKKPKTG 769 GVH+KEGW S YG+TKIGV+V+ RI+ARKL + + G Sbjct: 181 KGVHQKEGWPSSAYGVTKIGVTVLSRIHARKLSEQRKG 218 >ref|NP_001227.1| carbonyl reductase 3 [Homo sapiens] Length = 277 Score = 308 bits (788), Expect = 4e-84 Identities = 152/216 (70%), Positives = 185/216 (85%) Frame = +2 Query: 116 MSSNTRVALVTGANKGIGFAIVRDLCRQFAGDVVLTARDVARGQAAVKQLQAEGLSPRFH 295 MSS +RVALVTGAN+GIG AI R+LCRQF+GDVVLTARDVARGQAAV+QLQAEGLSPRFH Sbjct: 1 MSSCSRVALVTGANRGIGLAIARELCRQFSGDVVLTARDVARGQAAVQQLQAEGLSPRFH 60 Query: 296 QLDIIDLQSIRALCDFLRKEYGGLDVLVNNAAIAFQLDNPTPFHIQAELTMKTNFMGTRN 475 QLDI DLQSIRAL DFLRKEYGGL+VLVNNAA+AF+ D+P PF I+AE+T+KTNF TRN Sbjct: 61 QLDIDDLQSIRALRDFLRKEYGGLNVLVNNAAVAFKSDDPMPFDIKAEMTLKTNFFATRN 120 Query: 476 VCTELLPLIKPQGRVVNVSSTEGVRALNECSPELQQKFKSETITEEELGGLMNKFVEDTK 655 +C ELLP++KP GRVVN+SS + +RA CS +LQ++F SET+TE +L LM KFVEDTK Sbjct: 121 MCNELLPIMKPHGRVVNISSLQCLRAFENCSEDLQERFHSETLTEGDLVDLMKKFVEDTK 180 Query: 656 NGVHRKEGWXDSTYGLTKIGVSVVVRIYARKLKKPK 763 N VH +EGW +S YG++K+GV+V+ RI AR+L + + Sbjct: 181 NEVHEREGWPNSPYGVSKLGVTVLSRILARRLDEKR 216 >ref|XP_371503.3| PREDICTED: similar to short-chain dehydrogenase/reductase 1 [Homo sapiens] Length = 891 Score = 58.2 bits (139), Expect = 8e-09 Identities = 40/115 (34%), Positives = 65/115 (56%), Gaps = 3/115 (2%) Frame = +2 Query: 131 RVALVTGANKGIGFAIVRDLCRQFAGDVVLTARDVARGQAAVKQLQAEGLSPR--FHQLD 304 ++A+VTGAN GIG + +DL R V+LT + GQ A+ ++QA S R ++D Sbjct: 603 KIAIVTGANSGIGKVVSQDLAR-CGAQVILTCQSRECGQQALAEIQAASNSNRLLLGEVD 661 Query: 305 IIDLQSIRALCDFLRKEYGGLDVLVNNAAIAFQLDNP-TPFHIQAELTMKTNFMG 466 + + SIR+ L +E + +LVNNA ++ + TP + +LT TN++G Sbjct: 662 LSSMTSIRSFARRLLQENPEIHLLVNNAGVSGMIPKTLTPGGL--DLTFVTNYVG 714 >ref|XP_947127.1| PREDICTED: similar to short-chain dehydrogenase/reductase 1 [Homo sapiens] Length = 916 Score = 58.2 bits (139), Expect = 8e-09 Identities = 40/115 (34%), Positives = 65/115 (56%), Gaps = 3/115 (2%) Frame = +2 Query: 131 RVALVTGANKGIGFAIVRDLCRQFAGDVVLTARDVARGQAAVKQLQAEGLSPR--FHQLD 304 ++A+VTGAN GIG + +DL R V+LT + GQ A+ ++QA S R ++D Sbjct: 628 KIAIVTGANSGIGKVVSQDLAR-CGAQVILTCQSRECGQQALAEIQAASNSNRLLLGEVD 686 Query: 305 IIDLQSIRALCDFLRKEYGGLDVLVNNAAIAFQLDNP-TPFHIQAELTMKTNFMG 466 + + SIR+ L +E + +LVNNA ++ + TP + +LT TN++G Sbjct: 687 LSSMTSIRSFARRLLQENPEIHLLVNNAGVSGMIPKTLTPGGL--DLTFVTNYVG 739 >ref|NP_065956.1| retinol dehydrogenase 14 (all-trans and 9-cis) [Homo sapiens] Length = 336 Score = 56.6 bits (135), Expect = 2e-08 Identities = 52/153 (33%), Positives = 74/153 (48%), Gaps = 18/153 (11%) Frame = +2 Query: 131 RVALVTGANKGIGFAIVRDLCRQFAGDVVLTARDVARGQAAVKQLQAE-------GLSPR 289 + L+TGAN G+G A +L R V++ RD AR + A QL+ E G P Sbjct: 44 KTVLITGANSGLGRATAAELLR-LGARVIMGCRDRARAEEAAGQLRRELRQAAECGPEPG 102 Query: 290 F--------HQLDIIDLQSIRALCDFLRKEYGGLDVLVNNAAIAFQ---LDNPTPFHIQA 436 +LD+ L+S+RA C + +E LDVL+NNA I FQ + F +Q Sbjct: 103 VSGVGELIVRELDLASLRSVRAFCQEMLQEEPRLDVLINNAGI-FQCPYMKTEDGFEMQF 161 Query: 437 ELTMKTNFMGTRNVCTELLPLIKPQGRVVNVSS 535 + +F+ T N+ LL P R+V VSS Sbjct: 162 GVNHLGHFLLT-NLLLGLLKSSAP-SRIVVVSS 192 >ref|NP_689656.1| retinol dehydrogenase 12 (all-trans and 9-cis) [Homo sapiens] Length = 316 Score = 55.8 bits (133), Expect = 4e-08 Identities = 44/139 (31%), Positives = 72/139 (51%), Gaps = 4/139 (2%) Frame = +2 Query: 131 RVALVTGANKGIGFAIVRDLCRQFAGDVVLTARDVARGQAAVKQLQAEGLSPRF--HQLD 304 +V ++TGAN GIG R+L + A V + RDV +G++A +++ + + + +LD Sbjct: 40 KVVVITGANTGIGKETARELASRGAR-VYIACRDVLKGESAASEIRVDTKNSQVLVRKLD 98 Query: 305 IIDLQSIRALCDFLRKEYGGLDVLVNNAAIAFQLDNPTPFHIQAELTMKTNFMGTRNVCT 484 + D +SIRA + E L +L+NNA + + T + L + N +G + Sbjct: 99 LSDTKSIRAFAEGFLAEEKQLHILINNAGVMMCPYSKTADGFETHLGV--NHLGHFLLTY 156 Query: 485 ELLPLIK--PQGRVVNVSS 535 LL +K RVVNVSS Sbjct: 157 LLLEQLKVSAPARVVNVSS 175 >ref|NP_057110.2| androgen-regulated short-chain dehydrogenase/reductase 1 [Homo sapiens] Length = 318 Score = 55.1 bits (131), Expect = 6e-08 Identities = 47/142 (33%), Positives = 71/142 (50%), Gaps = 7/142 (4%) Frame = +2 Query: 131 RVALVTGANKGIGFAIVRDLCRQFAGDVVLTARDVARGQAAVKQLQAEGLSPRF--HQLD 304 +V +VTGAN GIG ++L ++ A V L RDV +G+ K++Q + + +LD Sbjct: 42 KVVVVTGANTGIGKETAKELAQRGAR-VYLACRDVEKGELVAKEIQTTTGNQQVLVRKLD 100 Query: 305 IIDLQSIRALCDFLRKEYGGLDVLVNNAAIAFQLDNPTPFHIQA---ELTMKTNFMGTRN 475 + D +SIRA E L VL+NNA + P+ A E+ + N +G Sbjct: 101 LSDTKSIRAFAKGFLAEEKHLHVLINNAGVMM-----CPYSKTADGFEMHIGVNHLGHFL 155 Query: 476 VCTELLPLIKPQ--GRVVNVSS 535 + LL +K R+VNVSS Sbjct: 156 LTHLLLEKLKESAPSRIVNVSS 177 >ref|XP_950347.1| PREDICTED: similar to dehydrogenase/reductase (SDR family) member 4 like 2 isoform 12 [Homo sapiens] Length = 186 Score = 54.3 bits (129), Expect = 1e-07 Identities = 43/123 (34%), Positives = 61/123 (49%), Gaps = 3/123 (2%) Frame = +2 Query: 131 RVALVTGANKGIGFAIVRDLCRQFAGDVVLTARDVARGQAAVKQLQAEGLSPRFHQLDII 310 +VALVT + GIGFAI R L + A VV+++R AV LQ EGLS + Sbjct: 31 KVALVTASTDGIGFAIARRLAQDRA-HVVVSSRKQQNVDQAVATLQGEGLSVTGTVCHVG 89 Query: 311 DLQSIRALCDFLRKEYGGLDVLVNNAAIAFQLDNP---TPFHIQAELTMKTNFMGTRNVC 481 + L K +GG+D+LV+NAA+ NP + + E+ K F G +C Sbjct: 90 KAEDRERLVAMAVKLHGGIDILVSNAAV-----NPFFGSLMDVTEEVWDKGWFSGVPGLC 144 Query: 482 TEL 490 + L Sbjct: 145 SSL 147 >ref|NP_932349.1| dehydrogenase/reductase (SDR family) member 4 like 2 [Homo sapiens] Length = 230 Score = 52.4 bits (124), Expect = 4e-07 Identities = 35/88 (39%), Positives = 48/88 (54%) Frame = +2 Query: 131 RVALVTGANKGIGFAIVRDLCRQFAGDVVLTARDVARGQAAVKQLQAEGLSPRFHQLDII 310 +VALVT + GIGFAI R L + A VV+++R AV LQ EGLS + Sbjct: 31 KVALVTASTDGIGFAIARRLAQDRA-HVVVSSRKQQNVDQAVATLQGEGLSVTGTVCHVG 89 Query: 311 DLQSIRALCDFLRKEYGGLDVLVNNAAI 394 + L K +GG+D+LV+NAA+ Sbjct: 90 KAEDRERLVAMAVKLHGGIDILVSNAAV 117 >ref|XP_950350.1| PREDICTED: similar to dehydrogenase/reductase (SDR family) member 4 like 2 isoform 14 [Homo sapiens] Length = 190 Score = 52.4 bits (124), Expect = 4e-07 Identities = 35/88 (39%), Positives = 48/88 (54%) Frame = +2 Query: 131 RVALVTGANKGIGFAIVRDLCRQFAGDVVLTARDVARGQAAVKQLQAEGLSPRFHQLDII 310 +VALVT + GIGFAI R L + A VV+++R AV LQ EGLS + Sbjct: 31 KVALVTASTDGIGFAIARRLAQDRA-HVVVSSRKQQNVDQAVATLQGEGLSVTGTVCHVG 89 Query: 311 DLQSIRALCDFLRKEYGGLDVLVNNAAI 394 + L K +GG+D+LV+NAA+ Sbjct: 90 KAEDRERLVAMAVKLHGGIDILVSNAAV 117 Database: RefSeqHP Posted date: Aug 2, 2006 12:57 AM Number of letters in database: 17,774,539 Number of sequences in database: 39,411 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 33,159,979 Number of Sequences: 39411 Number of extensions: 977458 Number of successful extensions: 5647 Number of sequences better than 1.0e-05: 10 Number of HSP's better than 0.0 without gapping: 4381 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5566 length of database: 17,774,539 effective HSP length: 100 effective length of database: 13,833,439 effective search space used: 2171849923 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
Search to RefSeqMP
BLASTX 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= 20060611S-058035 (773 letters) Database: RefSeqMP 45,328 sequences; 21,768,885 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Alignment gi|NP_031646.1| carbonyl reductase 1 [Mus musculus] 316 1e-86 Alignment gi|NP_766635.1| carbonyl reductase 3 [Mus musculus] 315 2e-86 Alignment gi|XP_487442.1| PREDICTED: similar to Carbonyl reductase [NADPH... 310 1e-84 Alignment gi|XP_989090.1| PREDICTED: similar to Carbonyl reductase [NADPH... 310 1e-84 Alignment gi|XP_359206.3| PREDICTED: similar to Carbonyl reductase [NADPH... 300 8e-82 Alignment gi|NP_780581.1| retinol dehydrogenase 13 (all-trans and 9-cis) ... 64 2e-10 Alignment gi|NP_067532.2| short-chain dehydrogenase/reductase 1 [Mus musc... 60 2e-09 Alignment gi|NP_076186.1| alcohol dehydrogenase PAN2 [Mus musculus] 59 5e-09 Alignment gi|NP_084293.1| retinol dehydrogenase 12 [Mus musculus] 57 2e-08 Alignment gi|NP_001028498.1| dehydrogenase/reductase (SDR family) X chrom... 57 3e-08 >ref|NP_031646.1| carbonyl reductase 1 [Mus musculus] Length = 277 Score = 316 bits (810), Expect = 1e-86 Identities = 162/216 (75%), Positives = 184/216 (85%) Frame = +2 Query: 116 MSSNTRVALVTGANKGIGFAIVRDLCRQFAGDVVLTARDVARGQAAVKQLQAEGLSPRFH 295 MSS+ VALVTGANKGIGFAI RDLCR+F+GDVVL ARD RGQ AV++LQAEGLSPRFH Sbjct: 1 MSSSRPVALVTGANKGIGFAITRDLCRKFSGDVVLAARDEERGQTAVQKLQAEGLSPRFH 60 Query: 296 QLDIIDLQSIRALCDFLRKEYGGLDVLVNNAAIAFQLDNPTPFHIQAELTMKTNFMGTRN 475 QLDI + QSIRAL DFL KEYGGLDVLVN A IAF++++ TPFHIQAE+TM+TNF GTR+ Sbjct: 61 QLDIDNPQSIRALRDFLLKEYGGLDVLVNKAGIAFKVNDDTPFHIQAEVTMETNFFGTRD 120 Query: 476 VCTELLPLIKPQGRVVNVSSTEGVRALNECSPELQQKFKSETITEEELGGLMNKFVEDTK 655 VC ELLPLIKPQGRVVNVSS +RAL C ELQQKF+SETITEEEL GLMNKFVEDTK Sbjct: 121 VCKELLPLIKPQGRVVNVSSMVSLRALKNCRLELQQKFRSETITEEELVGLMNKFVEDTK 180 Query: 656 NGVHRKEGWXDSTYGLTKIGVSVVVRIYARKLKKPK 763 GVH +EGW +S YG+TKIGV+V+ RI ARKL + + Sbjct: 181 KGVHAEEGWPNSAYGVTKIGVTVLSRILARKLNEQR 216 >ref|NP_766635.1| carbonyl reductase 3 [Mus musculus] Length = 277 Score = 315 bits (808), Expect = 2e-86 Identities = 155/216 (71%), Positives = 187/216 (86%) Frame = +2 Query: 116 MSSNTRVALVTGANKGIGFAIVRDLCRQFAGDVVLTARDVARGQAAVKQLQAEGLSPRFH 295 MSS +RVALVTGANKGIGFAI RDLCR+F+GDVVLTARD ARG+AAV+QLQAEGLSPRFH Sbjct: 1 MSSCSRVALVTGANKGIGFAITRDLCRKFSGDVVLTARDEARGRAAVQQLQAEGLSPRFH 60 Query: 296 QLDIIDLQSIRALCDFLRKEYGGLDVLVNNAAIAFQLDNPTPFHIQAELTMKTNFMGTRN 475 QLDI D QSIRAL DFLRKEYGGL+VLVNNA IAF++D+PTPF IQAE+T+KTNF TRN Sbjct: 61 QLDIDDPQSIRALRDFLRKEYGGLNVLVNNAGIAFRMDDPTPFDIQAEVTLKTNFFATRN 120 Query: 476 VCTELLPLIKPQGRVVNVSSTEGVRALNECSPELQQKFKSETITEEELGGLMNKFVEDTK 655 VCTELLP++KP GRVVN+SS +G++AL C +LQ+KF+ +T+TE +L LM KFVEDTK Sbjct: 121 VCTELLPIMKPHGRVVNISSLQGLKALENCREDLQEKFRCDTLTEVDLVDLMKKFVEDTK 180 Query: 656 NGVHRKEGWXDSTYGLTKIGVSVVVRIYARKLKKPK 763 N VH +EGW DS YG++K+GV+V+ RI AR+L + + Sbjct: 181 NEVHEREGWPDSAYGVSKLGVTVLTRILARQLDEKR 216 >ref|XP_487442.1| PREDICTED: similar to Carbonyl reductase [NADPH] 1 (NADPH-dependent carbonyl reductase 1) [Mus musculus] Length = 277 Score = 310 bits (793), Expect = 1e-84 Identities = 157/218 (72%), Positives = 184/218 (84%) Frame = +2 Query: 116 MSSNTRVALVTGANKGIGFAIVRDLCRQFAGDVVLTARDVARGQAAVKQLQAEGLSPRFH 295 MS +RVALVTG NKGIGF I+RDLC++F+GDVVLTARD ARG AAV++LQAEGL+PRFH Sbjct: 1 MSPCSRVALVTGGNKGIGFEIIRDLCQKFSGDVVLTARDEARGCAAVQKLQAEGLNPRFH 60 Query: 296 QLDIIDLQSIRALCDFLRKEYGGLDVLVNNAAIAFQLDNPTPFHIQAELTMKTNFMGTRN 475 QLDI D QSI AL DFL KEY GLDVLVNNA IAF++D+PTPFHI+ E+TMKTNF GTR+ Sbjct: 61 QLDIDDPQSIHALRDFLLKEYKGLDVLVNNAGIAFKVDDPTPFHIKGEVTMKTNFFGTRD 120 Query: 476 VCTELLPLIKPQGRVVNVSSTEGVRALNECSPELQQKFKSETITEEELGGLMNKFVEDTK 655 VC E+LPLIKPQGRVVNVSS + AL +CSPELQQKF+SETITEEEL GLMNK+VED K Sbjct: 121 VCKEMLPLIKPQGRVVNVSSMVSLSALKDCSPELQQKFRSETITEEELVGLMNKYVEDAK 180 Query: 656 NGVHRKEGWXDSTYGLTKIGVSVVVRIYARKLKKPKTG 769 GV+ KE W +S Y ++KIGV+V+ RI ARKL + + G Sbjct: 181 KGVYVKEDWPNSAYEVSKIGVTVLSRILARKLNEQRRG 218 >ref|XP_989090.1| PREDICTED: similar to Carbonyl reductase [NADPH] 1 (NADPH-dependent carbonyl reductase 1) [Mus musculus] Length = 277 Score = 310 bits (793), Expect = 1e-84 Identities = 157/218 (72%), Positives = 184/218 (84%) Frame = +2 Query: 116 MSSNTRVALVTGANKGIGFAIVRDLCRQFAGDVVLTARDVARGQAAVKQLQAEGLSPRFH 295 MS +RVALVTG NKGIGF I+RDLC++F+GDVVLTARD ARG AAV++LQAEGL+PRFH Sbjct: 1 MSPCSRVALVTGGNKGIGFEIIRDLCQKFSGDVVLTARDEARGCAAVQKLQAEGLNPRFH 60 Query: 296 QLDIIDLQSIRALCDFLRKEYGGLDVLVNNAAIAFQLDNPTPFHIQAELTMKTNFMGTRN 475 QLDI D QSI AL DFL KEY GLDVLVNNA IAF++D+PTPFHI+ E+TMKTNF GTR+ Sbjct: 61 QLDIDDPQSIHALRDFLLKEYKGLDVLVNNAGIAFKVDDPTPFHIKGEVTMKTNFFGTRD 120 Query: 476 VCTELLPLIKPQGRVVNVSSTEGVRALNECSPELQQKFKSETITEEELGGLMNKFVEDTK 655 VC E+LPLIKPQGRVVNVSS + AL +CSPELQQKF+SETITEEEL GLMNK+VED K Sbjct: 121 VCKEMLPLIKPQGRVVNVSSMVSLSALKDCSPELQQKFRSETITEEELVGLMNKYVEDAK 180 Query: 656 NGVHRKEGWXDSTYGLTKIGVSVVVRIYARKLKKPKTG 769 GV+ KE W +S Y ++KIGV+V+ RI ARKL + + G Sbjct: 181 KGVYVKEDWPNSAYEVSKIGVTVLSRILARKLNEQRRG 218 >ref|XP_359206.3| PREDICTED: similar to Carbonyl reductase [NADPH] 1 (NADPH-dependent carbonyl reductase 1) [Mus musculus] Length = 277 Score = 300 bits (769), Expect = 8e-82 Identities = 157/218 (72%), Positives = 178/218 (81%) Frame = +2 Query: 116 MSSNTRVALVTGANKGIGFAIVRDLCRQFAGDVVLTARDVARGQAAVKQLQAEGLSPRFH 295 M S +R+ALVTGANKGIGFAI RDLC+QF+GDVVLTARD ARG AAV++LQAEGL PRFH Sbjct: 1 MPSCSRIALVTGANKGIGFAITRDLCQQFSGDVVLTARDEARGLAAVQKLQAEGLIPRFH 60 Query: 296 QLDIIDLQSIRALCDFLRKEYGGLDVLVNNAAIAFQLDNPTPFHIQAELTMKTNFMGTRN 475 QLDI D QSI AL +FL KEYGGLDVLVNNA IA++ + T FHI E MKTNF GT+ Sbjct: 61 QLDINDPQSIHALRNFLLKEYGGLDVLVNNAGIAYKGTDLTHFHILREAAMKTNFFGTQA 120 Query: 476 VCTELLPLIKPQGRVVNVSSTEGVRALNECSPELQQKFKSETITEEELGGLMNKFVEDTK 655 VCTELLPLIK QGRVVN+SS + AL CS ELQQKF+SETITEEEL GLMNKFVEDTK Sbjct: 121 VCTELLPLIKTQGRVVNISSLISLEALKNCSLELQQKFRSETITEEELVGLMNKFVEDTK 180 Query: 656 NGVHRKEGWXDSTYGLTKIGVSVVVRIYARKLKKPKTG 769 GVH KEGW +S YG++KIGV+V+ RI ARKL + + G Sbjct: 181 KGVHAKEGWPNSAYGVSKIGVTVLSRILARKLNEQRRG 218 >ref|NP_780581.1| retinol dehydrogenase 13 (all-trans and 9-cis) [Mus musculus] Length = 334 Score = 63.5 bits (153), Expect = 2e-10 Identities = 46/139 (33%), Positives = 74/139 (53%), Gaps = 4/139 (2%) Frame = +2 Query: 131 RVALVTGANKGIGFAIVRDLCRQFAGDVVLTARDVARGQAAVKQLQAEGLSPRFH--QLD 304 + +VTGAN GIG +L ++ G+V+L RD+ + + A K ++ E L+PR +LD Sbjct: 39 KTVIVTGANTGIGKQTALELAKR-GGNVILACRDMEKCEVAAKDIRGETLNPRVRAERLD 97 Query: 305 IIDLQSIRALCDFLRKEYGGLDVLVNNAAIAFQLDNPTPFHIQAELTMKTNFMGTRNVCT 484 + L+SIR + KE +D+LVNNAA+ T E+ N++G + Sbjct: 98 LASLKSIREFARKVIKEEERVDILVNNAAVMRCPHWTTEDGF--EMQFGVNYLGHFLLTN 155 Query: 485 ELLPLIKPQ--GRVVNVSS 535 LL +K R++N+SS Sbjct: 156 LLLDKLKASAPSRIINLSS 174 >ref|NP_067532.2| short-chain dehydrogenase/reductase 1 [Mus musculus] Length = 316 Score = 60.1 bits (144), Expect = 2e-09 Identities = 54/143 (37%), Positives = 79/143 (55%), Gaps = 8/143 (5%) Frame = +2 Query: 131 RVALVTGANKGIGFAIVRDLCRQFAGDVVLTARDVARGQAAVKQLQA-EGLSPRF-HQLD 304 +VA+VTGAN GIG +DL ++ A V L RDV +G+ A +++QA G S F +LD Sbjct: 39 KVAIVTGANTGIGKETAKDLAQRGA-RVYLACRDVDKGELAAREIQAVTGNSQVFVRKLD 97 Query: 305 IIDLQSIRALC-DFLRKEYGGLDVLVNNAAIAFQLDNPTPFHIQA---ELTMKTNFMGTR 472 + D +SIRA DFL +E L +L+NNA + P+ A E+ + N +G Sbjct: 98 LADTKSIRAFAKDFLAEE-KHLHLLINNAGVMM-----CPYSKTADGFEMHIGVNHLGHF 151 Query: 473 NVCTELLPLIKPQ--GRVVNVSS 535 + LL +K R+VN+SS Sbjct: 152 LLTHLLLEKLKESAPSRIVNLSS 174 >ref|NP_076186.1| alcohol dehydrogenase PAN2 [Mus musculus] Length = 334 Score = 58.9 bits (141), Expect = 5e-09 Identities = 52/149 (34%), Positives = 71/149 (47%), Gaps = 14/149 (9%) Frame = +2 Query: 131 RVALVTGANKGIGFAIVRDLCRQFAGDVVLTARDVARGQAAVKQL-----QAEGLSPR-- 289 + L+TGAN G+G A +L R V++ RD AR + A QL QA G P Sbjct: 45 KTVLITGANSGLGRATAAELLR-LGARVIMGCRDRARAEEAAGQLRQELCQAGGAGPDGT 103 Query: 290 -----FHQLDIIDLQSIRALCDFLRKEYGGLDVLVNNAAIAFQLDNPTPFHIQAELTMKT 454 +LD+ L+S+RA C L +E LDVL+NNA + F T E+ Sbjct: 104 DGQLVVKELDLASLRSVRAFCQELLQEEPRLDVLINNAGV-FHCPY-TKTEDGFEMQFGV 161 Query: 455 NFMGTRNVCTELLPLIKPQ--GRVVNVSS 535 N +G + LL L+K R+V VSS Sbjct: 162 NHLGHFLLTNLLLGLLKSSAPSRIVVVSS 190 >ref|NP_084293.1| retinol dehydrogenase 12 [Mus musculus] Length = 316 Score = 57.4 bits (137), Expect = 2e-08 Identities = 44/139 (31%), Positives = 73/139 (52%), Gaps = 4/139 (2%) Frame = +2 Query: 131 RVALVTGANKGIGFAIVRDLCRQFAGDVVLTARDVARGQAAVKQLQAEGLSPRF--HQLD 304 +V ++TGAN GIG R+L R+ A V + RDV +G++A +++A+ + + +LD Sbjct: 40 KVVVITGANTGIGKETARELARRGAR-VYIACRDVLKGESAASEIRADTKNSQVLVRKLD 98 Query: 305 IIDLQSIRALCDFLRKEYGGLDVLVNNAAIAFQLDNPTPFHIQAELTMKTNFMGTRNVCT 484 + D +SIRA + E L +L+NNA + + T + + N +G + Sbjct: 99 LSDTKSIRAFAERFLAEEKKLHILINNAGVMMCPYSKTTDGFETHFGV--NHLGHFLLTY 156 Query: 485 ELLPLIKPQ--GRVVNVSS 535 LL +K RVVN+SS Sbjct: 157 LLLERLKESAPARVVNLSS 175 >ref|NP_001028498.1| dehydrogenase/reductase (SDR family) X chromosome [Mus musculus] Length = 335 Score = 56.6 bits (135), Expect = 3e-08 Identities = 50/143 (34%), Positives = 67/143 (46%), Gaps = 8/143 (5%) Frame = +2 Query: 131 RVALVTGANKGIGFAIVRDLCRQFAGDVVLTARDVARGQAAVKQLQAEGLSPRFH--QLD 304 RVA+VTGA GIG + R L R VV+ D RGQ V ++AE S R H LD Sbjct: 44 RVAIVTGATAGIGRSTARQLAR-LGMCVVVAGNDEHRGQEVVSSIRAEMGSDRAHFLPLD 102 Query: 305 IIDLQSIRALCDFLRKEYGGLDVLVNNAAIAFQLDNPTPFHIQAELTMKTNFMGTRNVCT 484 + L S+R + L +LVNNA + + T + L + NF+G + Sbjct: 103 LASLASVRGFARDFQALGLPLHLLVNNAGVMLEPRAETEDGFERHLGV--NFLGHFLLTL 160 Query: 485 ELLPLIKPQG------RVVNVSS 535 LLP ++ G RVV V S Sbjct: 161 LLLPALRASGAEGRGSRVVTVGS 183 Database: RefSeqMP Posted date: Aug 2, 2006 12:58 AM Number of letters in database: 21,768,885 Number of sequences in database: 45,328 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 39,322,020 Number of Sequences: 45328 Number of extensions: 1109606 Number of successful extensions: 5948 Number of sequences better than 1.0e-05: 10 Number of HSP's better than 0.0 without gapping: 4810 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5883 length of database: 21,768,885 effective HSP length: 101 effective length of database: 17,190,757 effective search space used: 2681758092 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)