BLASTX 2.2.10 [Oct-19-2004]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20060611S-058261
(1301 letters)
Database: RefSeqSP
1040 sequences; 434,620 total letters
Searching...done
***** No hits found ******
Database: RefSeqSP
Posted date: Aug 1, 2006 7:14 PM
Number of letters in database: 434,620
Number of sequences in database: 1040
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,311,123
Number of Sequences: 1040
Number of extensions: 39774
Number of successful extensions: 231
Number of sequences better than 1.0e-05: 0
Number of HSP's better than 0.0 without gapping: 121
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 216
length of database: 434,620
effective HSP length: 79
effective length of database: 352,460
effective search space used: 124770840
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
Search to RefSeqBP
BLASTX 2.2.10 [Oct-19-2004]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20060611S-058261
(1301 letters)
Database: RefSeqBP
33,508 sequences; 16,112,626 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_613518.2| PREDICTED: similar to Cytochrome P450 26B1 (P45... 87 3e-17
Alignment gi|XP_584485.2| PREDICTED: similar to cytochrome P450, family 2... 50 7e-10
>ref|XP_613518.2| PREDICTED: similar to Cytochrome P450 26B1 (P450 26A2) (P450
retinoic acid-inactivating 2) (P450RAI-2) (Retinoic-acid
metabolizing cytochrome) [Bos taurus]
Length = 512
Score = 87.0 bits (214), Expect = 3e-17
Identities = 40/41 (97%), Positives = 41/41 (100%)
Frame = -2
Query: 532 KILMGEHHLVSTEWPRSTRMLLGPNTVANSIGDIHRNKRKV 410
KILMGEHHLVSTEWPRSTRMLLGPNTV+NSIGDIHRNKRKV
Sbjct: 104 KILMGEHHLVSTEWPRSTRMLLGPNTVSNSIGDIHRNKRKV 144
>ref|XP_584485.2| PREDICTED: similar to cytochrome P450, family 26, subfamily C,
polypeptide 1 [Bos taurus]
Length = 611
Score = 50.4 bits (119), Expect(2) = 7e-10
Identities = 18/40 (45%), Positives = 31/40 (77%)
Frame = -2
Query: 529 ILMGEHHLVSTEWPRSTRMLLGPNTVANSIGDIHRNKRKV 410
+L+GEH LV ++WP+S +LLG +T+ ++G+ HR +RK+
Sbjct: 193 VLLGEHRLVRSQWPQSAHILLGSHTLLGAVGESHRQRRKI 232
Score = 32.0 bits (71), Expect(2) = 7e-10
Identities = 14/16 (87%), Positives = 16/16 (100%)
Frame = -1
Query: 581 LLGRPLIRVTGAENVR 534
LLGRP+IRV+GAENVR
Sbjct: 176 LLGRPVIRVSGAENVR 191
Database: RefSeqBP
Posted date: Aug 1, 2006 7:14 PM
Number of letters in database: 16,112,626
Number of sequences in database: 33,508
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 52,018,224
Number of Sequences: 33508
Number of extensions: 1747891
Number of successful extensions: 11084
Number of sequences better than 1.0e-05: 2
Number of HSP's better than 0.0 without gapping: 5673
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10145
length of database: 16,112,626
effective HSP length: 104
effective length of database: 12,627,794
effective search space used: 4154544226
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
Search to RefSeqCP
BLASTX 2.2.10 [Oct-19-2004]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20060611S-058261
(1301 letters)
Database: RefSeqCP
33,732 sequences; 19,266,565 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_540236.2| PREDICTED: similar to Cytochrome P450 26B1 (P45... 88 2e-17
Alignment gi|XP_850267.1| PREDICTED: similar to cytochrome P450, family 2... 51 6e-10
>ref|XP_540236.2| PREDICTED: similar to Cytochrome P450 26B1 (P450 26A2) (P450
retinoic acid-inactivating 2) (P450RAI-2) (Retinoic-acid
metabolizing cytochrome) [Canis familiaris]
Length = 512
Score = 88.2 bits (217), Expect = 2e-17
Identities = 41/41 (100%), Positives = 41/41 (100%)
Frame = -2
Query: 532 KILMGEHHLVSTEWPRSTRMLLGPNTVANSIGDIHRNKRKV 410
KILMGEHHLVSTEWPRSTRMLLGPNTVANSIGDIHRNKRKV
Sbjct: 104 KILMGEHHLVSTEWPRSTRMLLGPNTVANSIGDIHRNKRKV 144
>ref|XP_850267.1| PREDICTED: similar to cytochrome P450, family 26, subfamily C,
polypeptide 1 [Canis familiaris]
Length = 822
Score = 50.8 bits (120), Expect(2) = 6e-10
Identities = 20/40 (50%), Positives = 31/40 (77%)
Frame = -2
Query: 529 ILMGEHHLVSTEWPRSTRMLLGPNTVANSIGDIHRNKRKV 410
IL+GEH LV ++WP+S +LLG +T+ ++G+ HR +RKV
Sbjct: 399 ILLGEHRLVRSQWPQSAHILLGSHTLLGAVGEPHRRRRKV 438
Score = 32.0 bits (71), Expect(2) = 6e-10
Identities = 14/16 (87%), Positives = 16/16 (100%)
Frame = -1
Query: 581 LLGRPLIRVTGAENVR 534
LLGRP+IRV+GAENVR
Sbjct: 382 LLGRPVIRVSGAENVR 397
Database: RefSeqCP
Posted date: Aug 1, 2006 9:25 PM
Number of letters in database: 19,266,565
Number of sequences in database: 33,732
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 61,478,000
Number of Sequences: 33732
Number of extensions: 2096538
Number of successful extensions: 14248
Number of sequences better than 1.0e-05: 2
Number of HSP's better than 0.0 without gapping: 6711
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12859
length of database: 19,266,565
effective HSP length: 106
effective length of database: 15,690,973
effective search space used: 5130948171
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
Search to RefSeqHP
BLASTX 2.2.10 [Oct-19-2004]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20060611S-058261
(1301 letters)
Database: RefSeqHP
39,411 sequences; 17,774,539 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_063938.1| cytochrome P450, family 26, subfamily b, polype... 87 3e-17
Alignment gi|NP_899230.2| cytochrome P450, family 26, subfamily C, polype... 51 6e-10
>ref|NP_063938.1| cytochrome P450, family 26, subfamily b, polypeptide 1 [Homo
sapiens]
Length = 512
Score = 87.0 bits (214), Expect = 3e-17
Identities = 40/41 (97%), Positives = 41/41 (100%)
Frame = -2
Query: 532 KILMGEHHLVSTEWPRSTRMLLGPNTVANSIGDIHRNKRKV 410
KILMGEHHLVSTEWPRSTRMLLGPNTV+NSIGDIHRNKRKV
Sbjct: 104 KILMGEHHLVSTEWPRSTRMLLGPNTVSNSIGDIHRNKRKV 144
>ref|NP_899230.2| cytochrome P450, family 26, subfamily C, polypeptide 1 [Homo
sapiens]
Length = 522
Score = 50.8 bits (120), Expect(2) = 6e-10
Identities = 20/40 (50%), Positives = 31/40 (77%)
Frame = -2
Query: 529 ILMGEHHLVSTEWPRSTRMLLGPNTVANSIGDIHRNKRKV 410
IL+GEH LV ++WP+S +LLG +T+ ++G+ HR +RKV
Sbjct: 105 ILLGEHRLVRSQWPQSAHILLGSHTLLGAVGEPHRRRRKV 144
Score = 32.0 bits (71), Expect(2) = 6e-10
Identities = 14/16 (87%), Positives = 16/16 (100%)
Frame = -1
Query: 581 LLGRPLIRVTGAENVR 534
LLGRP+IRV+GAENVR
Sbjct: 88 LLGRPVIRVSGAENVR 103
Database: RefSeqHP
Posted date: Aug 2, 2006 12:57 AM
Number of letters in database: 17,774,539
Number of sequences in database: 39,411
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 59,619,995
Number of Sequences: 39411
Number of extensions: 2124516
Number of successful extensions: 15394
Number of sequences better than 1.0e-05: 2
Number of HSP's better than 0.0 without gapping: 6578
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13355
length of database: 17,774,539
effective HSP length: 105
effective length of database: 13,636,384
effective search space used: 4472733952
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
Search to RefSeqMP
BLASTX 2.2.10 [Oct-19-2004]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20060611S-058261
(1301 letters)
Database: RefSeqMP
45,328 sequences; 21,768,885 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_780684.1| cytochrome P450, family 26, subfamily b, polype... 80 5e-20
Alignment gi|XP_621503.2| PREDICTED: similar to cytochrome P450, family 2... 51 7e-10
Alignment gi|XP_980081.1| PREDICTED: similar to cytochrome P450, family 2... 51 7e-10
Alignment gi|XP_920032.1| PREDICTED: similar to cytochrome P450, family 2... 51 7e-10
>ref|NP_780684.1| cytochrome P450, family 26, subfamily b, polypeptide 1 [Mus
musculus]
Length = 512
Score = 80.5 bits (197), Expect(2) = 5e-20
Identities = 37/41 (90%), Positives = 39/41 (95%)
Frame = -2
Query: 532 KILMGEHHLVSTEWPRSTRMLLGPNTVANSIGDIHRNKRKV 410
KIL+GEH LVSTEWPRS R+LLGPNTVANSIGDIHRNKRKV
Sbjct: 104 KILLGEHQLVSTEWPRSARVLLGPNTVANSIGDIHRNKRKV 144
Score = 36.6 bits (83), Expect(2) = 5e-20
Identities = 17/17 (100%), Positives = 17/17 (100%)
Frame = -1
Query: 581 LLGRPLIRVTGAENVRK 531
LLGRPLIRVTGAENVRK
Sbjct: 88 LLGRPLIRVTGAENVRK 104
>ref|XP_621503.2| PREDICTED: similar to cytochrome P450, family 26, subfamily C,
polypeptide 1 [Mus musculus]
Length = 518
Score = 50.8 bits (120), Expect(2) = 7e-10
Identities = 20/40 (50%), Positives = 31/40 (77%)
Frame = -2
Query: 529 ILMGEHHLVSTEWPRSTRMLLGPNTVANSIGDIHRNKRKV 410
IL+GEH LV ++WP+S +LLG +T+ ++G+ HR +RKV
Sbjct: 105 ILLGEHRLVRSQWPQSAHILLGSHTLLGAVGEPHRQRRKV 144
Score = 32.0 bits (71), Expect(2) = 7e-10
Identities = 14/16 (87%), Positives = 16/16 (100%)
Frame = -1
Query: 581 LLGRPLIRVTGAENVR 534
LLGRP+IRV+GAENVR
Sbjct: 88 LLGRPVIRVSGAENVR 103
>ref|XP_980081.1| PREDICTED: similar to cytochrome P450, family 26, subfamily C,
polypeptide 1 [Mus musculus]
Length = 518
Score = 50.8 bits (120), Expect(2) = 7e-10
Identities = 20/40 (50%), Positives = 31/40 (77%)
Frame = -2
Query: 529 ILMGEHHLVSTEWPRSTRMLLGPNTVANSIGDIHRNKRKV 410
IL+GEH LV ++WP+S +LLG +T+ ++G+ HR +RKV
Sbjct: 105 ILLGEHRLVRSQWPQSAHILLGSHTLLGAVGEPHRQRRKV 144
Score = 32.0 bits (71), Expect(2) = 7e-10
Identities = 14/16 (87%), Positives = 16/16 (100%)
Frame = -1
Query: 581 LLGRPLIRVTGAENVR 534
LLGRP+IRV+GAENVR
Sbjct: 88 LLGRPVIRVSGAENVR 103
>ref|XP_920032.1| PREDICTED: similar to cytochrome P450, family 26, subfamily C,
polypeptide 1 [Mus musculus]
Length = 518
Score = 50.8 bits (120), Expect(2) = 7e-10
Identities = 20/40 (50%), Positives = 31/40 (77%)
Frame = -2
Query: 529 ILMGEHHLVSTEWPRSTRMLLGPNTVANSIGDIHRNKRKV 410
IL+GEH LV ++WP+S +LLG +T+ ++G+ HR +RKV
Sbjct: 105 ILLGEHRLVRSQWPQSAHILLGSHTLLGAVGEPHRQRRKV 144
Score = 32.0 bits (71), Expect(2) = 7e-10
Identities = 14/16 (87%), Positives = 16/16 (100%)
Frame = -1
Query: 581 LLGRPLIRVTGAENVR 534
LLGRP+IRV+GAENVR
Sbjct: 88 LLGRPVIRVSGAENVR 103
Database: RefSeqMP
Posted date: Aug 2, 2006 12:58 AM
Number of letters in database: 21,768,885
Number of sequences in database: 45,328
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 68,265,458
Number of Sequences: 45328
Number of extensions: 2254203
Number of successful extensions: 14346
Number of sequences better than 1.0e-05: 4
Number of HSP's better than 0.0 without gapping: 6956
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12514
length of database: 21,768,885
effective HSP length: 106
effective length of database: 16,964,117
effective search space used: 5547266259
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)