Animal-Genome cDNA 20060611S-058412


Search to RefSeqSP

BLASTX 2.2.10 [Oct-19-2004]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20060611S-058412
         (1140 letters)

Database: RefSeqSP 
           1040 sequences; 434,620 total letters

Searching...done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_999238.1| 20-beta-hydroxysteroid dehydrogenase [Sus scrofa]    278   1e-76
Alignment   gi|NP_999184.1| carbonyl reductase/NADP-retinol dehydrogenase [...    46   2e-06

>ref|NP_999238.1| 20-beta-hydroxysteroid dehydrogenase [Sus scrofa]
          Length = 289

 Score =  278 bits (712), Expect = 1e-76
 Identities = 147/181 (81%), Positives = 157/181 (86%)
 Frame = +1

Query: 121 MSSNTRVALVTGANKGIGFAIVRDLCRQFAGDVVLTARDVARGQAAVKQLQAEGLSPRFH 300
           MSSNTRVALVTGANKGIGFAIVRDLCRQFAGDVVLTARDVARGQAAVKQLQAEGLSPRFH
Sbjct: 1   MSSNTRVALVTGANKGIGFAIVRDLCRQFAGDVVLTARDVARGQAAVKQLQAEGLSPRFH 60

Query: 301 QLDIIDLQSIRALCDFLRKEYGGLDVLVDNAAIAFQLDNPTPFHVQAELTMKTNFMGNRN 480
           QLDIIDLQSIRALCDFLRKEYGGLDVLV+NAAIAFQLDNPTPFH+QAELTMKTNFMG RN
Sbjct: 61  QLDIIDLQSIRALCDFLRKEYGGLDVLVNNAAIAFQLDNPTPFHIQAELTMKTNFMGTRN 120

Query: 481 VCTELLPLIKLQGKVVNVSNP*GVRTPLQVQP*ICTKIPKMKPPQRKTRGGLLNNFLEKT 660
           VCTELLPLIK QG+VVNVS+  GVR   +  P +  K  K +    +   GL+N F+E T
Sbjct: 121 VCTELLPLIKPQGRVVNVSSTEGVRALNECSPELQQKF-KSETITEEELVGLMNKFVEDT 179

Query: 661 K 663
           K
Sbjct: 180 K 180


>ref|NP_999184.1| carbonyl reductase/NADP-retinol dehydrogenase [Sus scrofa]
          Length = 260

 Score = 45.8 bits (107), Expect = 2e-06
 Identities = 32/88 (36%), Positives = 43/88 (48%)
 Frame = +1

Query: 136 RVALVTGANKGIGFAIVRDLCRQFAGDVVLTARDVARGQAAVKQLQAEGLSPRFHQLDII 315
           +VALVT +  GIG AI R L  Q    VV+++R        V  LQ EGLS       + 
Sbjct: 15  KVALVTASTDGIGLAIARRLA-QDGAHVVVSSRKQENVDRTVATLQGEGLSVTGTVCHVG 73

Query: 316 DLQSIRALCDFLRKEYGGLDVLVDNAAI 399
             +    L       +GG+D+LV NAA+
Sbjct: 74  KAEDRERLVAMAVNLHGGVDILVSNAAV 101


  Database: RefSeqSP
    Posted date:  Aug 1, 2006  7:14 PM
  Number of letters in database: 434,620
  Number of sequences in database:  1040
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,004,001
Number of Sequences: 1040
Number of extensions: 27774
Number of successful extensions: 126
Number of sequences better than 1.0e-05: 2
Number of HSP's better than  0.0 without gapping: 110
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 122
length of database: 434,620
effective HSP length: 78
effective length of database: 353,500
effective search space used: 106403500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

Search to RefSeqBP

BLASTX 2.2.10 [Oct-19-2004]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20060611S-058412
         (1140 letters)

Database: RefSeqBP 
           33,508 sequences; 16,112,626 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_001030258.1| 20-beta-hydroxysteroid dehydrogenase-like [B...   234   1e-61
Alignment   gi|XP_869745.1| PREDICTED: similar to carbonyl reductase 3 isof...   224   1e-58
Alignment   gi|NP_001029685.1| carbonyl reductase 1 [Bos taurus]                 222   5e-58
Alignment   gi|XP_874747.1| PREDICTED: similar to Carbonyl reductase [NADPH...   215   6e-56
Alignment   gi|XP_868956.1| PREDICTED: similar to Carbonyl reductase [NADPH...    74   2e-13
Alignment   gi|XP_584642.2| PREDICTED: similar to retinol dehydrogenase 11 ...    61   2e-09
Alignment   gi|NP_899207.1| double substrate-specificity short chain dehydr...    57   3e-08
Alignment   gi|XP_592820.2| PREDICTED: similar to retinol dehydrogenase 11 ...    56   5e-08
Alignment   gi|XP_584629.2| PREDICTED: similar to Retinol dehydrogenase 13,...    55   1e-07
Alignment   gi|NP_777126.1| short-chain dehydrogenase/reductase [Bos taurus]      54   2e-07

>ref|NP_001030258.1| 20-beta-hydroxysteroid dehydrogenase-like [Bos taurus]
          Length = 286

 Score =  234 bits (596), Expect = 1e-61
 Identities = 123/181 (67%), Positives = 147/181 (81%)
 Frame = +1

Query: 121 MSSNTRVALVTGANKGIGFAIVRDLCRQFAGDVVLTARDVARGQAAVKQLQAEGLSPRFH 300
           MSS+TRVALVTGANKG+GFAIVRDLCR+F GDVVLTARD ARG+AAV+QLQAEGLSPRFH
Sbjct: 1   MSSSTRVALVTGANKGLGFAIVRDLCRRFPGDVVLTARDEARGRAAVQQLQAEGLSPRFH 60

Query: 301 QLDIIDLQSIRALCDFLRKEYGGLDVLVDNAAIAFQLDNPTPFHVQAELTMKTNFMGNRN 480
           QLDI DLQSI AL DFLRKEYGGLDVLV+NAAIAFQL +PTP  ++AE+TMKTNF G R+
Sbjct: 61  QLDITDLQSIHALRDFLRKEYGGLDVLVNNAAIAFQLSDPTPTPIKAEMTMKTNFFGTRD 120

Query: 481 VCTELLPLIKLQGKVVNVSNP*GVRTPLQVQP*ICTKIPKMKPPQRKTRGGLLNNFLEKT 660
           +CTELLPL+K QG+VVN+S+  G +      P +  K+ + +    +   GL+N F+E T
Sbjct: 121 ICTELLPLMKPQGRVVNMSSGWGFKALESCSPELQQKL-RSETITEEELVGLMNKFVEDT 179

Query: 661 K 663
           K
Sbjct: 180 K 180


>ref|XP_869745.1| PREDICTED: similar to carbonyl reductase 3 isoform 2 [Bos taurus]
          Length = 277

 Score =  224 bits (571), Expect = 1e-58
 Identities = 113/143 (79%), Positives = 127/143 (88%)
 Frame = +1

Query: 121 MSSNTRVALVTGANKGIGFAIVRDLCRQFAGDVVLTARDVARGQAAVKQLQAEGLSPRFH 300
           MSS TRVALVTGANKGIGFAI RDLCR+F GDVVLTARD ARG+AAV+QLQAEGLSPRFH
Sbjct: 1   MSSYTRVALVTGANKGIGFAIARDLCREFPGDVVLTARDKARGRAAVQQLQAEGLSPRFH 60

Query: 301 QLDIIDLQSIRALCDFLRKEYGGLDVLVDNAAIAFQLDNPTPFHVQAELTMKTNFMGNRN 480
           QLDI DLQSIRAL DFLRKEYGGL+VLV+NA IAF+ D+PTPF +QAE+T+KTNF   RN
Sbjct: 61  QLDIDDLQSIRALRDFLRKEYGGLNVLVNNAGIAFKTDDPTPFDIQAEMTLKTNFFATRN 120

Query: 481 VCTELLPLIKLQGKVVNVSNP*G 549
           VCTELLP++K  G+VVNVS+  G
Sbjct: 121 VCTELLPIVKPHGRVVNVSSSQG 143


>ref|NP_001029685.1| carbonyl reductase 1 [Bos taurus]
          Length = 277

 Score =  222 bits (565), Expect = 5e-58
 Identities = 121/181 (66%), Positives = 142/181 (78%)
 Frame = +1

Query: 121 MSSNTRVALVTGANKGIGFAIVRDLCRQFAGDVVLTARDVARGQAAVKQLQAEGLSPRFH 300
           MSS+  VALVTGANKGIGF IVRDLCR+F+GDVVLTARD ARG+AAV+QLQAEGLSP FH
Sbjct: 1   MSSSNCVALVTGANKGIGFVIVRDLCRRFSGDVVLTARDEARGRAAVQQLQAEGLSPLFH 60

Query: 301 QLDIIDLQSIRALCDFLRKEYGGLDVLVDNAAIAFQLDNPTPFHVQAELTMKTNFMGNRN 480
           QLDI D QSIRAL DFLRKEYGGLDVLV+NA IAF+  + TPFH+QAE+TMKTNF G R+
Sbjct: 61  QLDIDDRQSIRALRDFLRKEYGGLDVLVNNAGIAFKTADTTPFHIQAEVTMKTNFFGTRD 120

Query: 481 VCTELLPLIKLQGKVVNVSNP*GVRTPLQVQP*ICTKIPKMKPPQRKTRGGLLNNFLEKT 660
           VCTELLPLIK QG+VVNVS+   V +  +    +  K  + +    +   GL+N F+E T
Sbjct: 121 VCTELLPLIKPQGRVVNVSSFVSVNSLKKCSRELQQKF-RSETITEEELVGLMNKFVEDT 179

Query: 661 K 663
           K
Sbjct: 180 K 180


>ref|XP_874747.1| PREDICTED: similar to Carbonyl reductase [NADPH] 1 (NADPH-dependent
           carbonyl reductase 1) (Prostaglandin-E(2) 9-reductase)
           (Prostaglandin 9-ketoreductase) (15-hydroxyprostaglandin
           dehydrogenase [NADP+]) [Bos taurus]
          Length = 277

 Score =  215 bits (547), Expect = 6e-56
 Identities = 118/181 (65%), Positives = 140/181 (77%)
 Frame = +1

Query: 121 MSSNTRVALVTGANKGIGFAIVRDLCRQFAGDVVLTARDVARGQAAVKQLQAEGLSPRFH 300
           MSS+TRVALVTGANKG+GFAIVR L   F GDVVLTA D A+G+AAV+QLQA+GLSP FH
Sbjct: 1   MSSSTRVALVTGANKGLGFAIVRALAGGFQGDVVLTAPDEAQGRAAVQQLQAQGLSPLFH 60

Query: 301 QLDIIDLQSIRALCDFLRKEYGGLDVLVDNAAIAFQLDNPTPFHVQAELTMKTNFMGNRN 480
           QLDI D QSIRAL DFLRKEYGGLDVLV+NA IAF+  + TPFH+QAE+TMKTNF G R+
Sbjct: 61  QLDIDDRQSIRALRDFLRKEYGGLDVLVNNAGIAFKTADTTPFHIQAEVTMKTNFFGTRD 120

Query: 481 VCTELLPLIKLQGKVVNVSNP*GVRTPLQVQP*ICTKIPKMKPPQRKTRGGLLNNFLEKT 660
           VCTELLPLIK QG+VVNVS+   V +  +  P +  K  + +    +   GL+N F+E T
Sbjct: 121 VCTELLPLIKPQGRVVNVSSSVSVSSLKKCSPELQQKF-QSETITEEELVGLMNKFVEDT 179

Query: 661 K 663
           K
Sbjct: 180 K 180


>ref|XP_868956.1| PREDICTED: similar to Carbonyl reductase [NADPH] 1 (NADPH-dependent
           carbonyl reductase 1) (Prostaglandin-E(2) 9-reductase)
           (Prostaglandin 9-ketoreductase) (15-hydroxyprostaglandin
           dehydrogenase [NADP+]) [Bos taurus]
          Length = 327

 Score = 74.3 bits (181), Expect = 2e-13
 Identities = 61/175 (34%), Positives = 84/175 (48%)
 Frame = +1

Query: 139 VALVTGANKGIGFAIVRDLCRQFAGDVVLTARDVARGQAAVKQLQAEGLSPRFHQLDIID 318
           +ALVTGANKGIG A++        G      R     +AA +          FH+   + 
Sbjct: 1   MALVTGANKGIGLAVL------LLGGAGTGDRGCIHIRAAPRGSARRPPPLSFHEWRPLG 54

Query: 319 LQSIRALCDFLRKEYGGLDVLVDNAAIAFQLDNPTPFHVQAELTMKTNFMGNRNVCTELL 498
                           G+     +AA      + TPF +QAE+TMKTNF G R VCTELL
Sbjct: 55  -----------GSPAAGISTHWISAA------DTTPFPIQAEVTMKTNFFGTRVVCTELL 97

Query: 499 PLIKLQGKVVNVSNP*GVRTPLQVQP*ICTKIPKMKPPQRKTRGGLLNNFLEKTK 663
           PL+K QG+VVNVS+   V +  +  P +  K  + +    +   GL+N F+E TK
Sbjct: 98  PLLKPQGRVVNVSSSVSVTSLKKCSPELQQKF-QSETITEEELVGLMNKFVEDTK 151


>ref|XP_584642.2| PREDICTED: similar to retinol dehydrogenase 11 (predicted) [Bos
           taurus]
          Length = 330

 Score = 60.8 bits (146), Expect = 2e-09
 Identities = 48/139 (34%), Positives = 76/139 (54%), Gaps = 4/139 (2%)
 Frame = +1

Query: 136 RVALVTGANKGIGFAIVRDLCRQFAGDVVLTARDVARGQAAVKQLQAEGLSPR--FHQLD 309
           + A+VTGAN GIG A+ ++L  + A  V+L  R   RGQ A+ ++QA   S R    ++D
Sbjct: 50  KTAVVTGANSGIGKAVSQELAHRGA-RVILACRSRERGQQALAEIQATSKSNRLLLGEVD 108

Query: 310 IIDLQSIRALCDFLRKEYGGLDVLVDNAAIAFQLDNPTPFHVQAELTMKTNFMGNRNVCT 489
           +  + SIR+    L +E   + +LV+NAA+       TP  +  +LT  TN+ G   +  
Sbjct: 109 LSSMASIRSFAQRLLQECPEIHLLVNNAAVCGFPTTLTPEGL--DLTFATNYTGPFLLTN 166

Query: 490 ELLPLIKLQG--KVVNVSN 540
            L   ++  G  +VVNVS+
Sbjct: 167 LLQGALQRAGSARVVNVSS 185


>ref|NP_899207.1| double substrate-specificity short chain dehydrogenase/reductase 2
           [Bos taurus]
          Length = 316

 Score = 57.0 bits (136), Expect = 3e-08
 Identities = 43/139 (30%), Positives = 75/139 (53%), Gaps = 4/139 (2%)
 Frame = +1

Query: 136 RVALVTGANKGIGFAIVRDLCRQFAGDVVLTARDVARGQAAVKQLQAEGLSPR--FHQLD 309
           +V ++TGAN GIG    R+L R+ A  V +  RDV +G++A  ++QA+  + +    +LD
Sbjct: 40  KVVVITGANTGIGKETARELARRGA-RVYIACRDVLKGESAASEIQADTKNSQVLVRKLD 98

Query: 310 IIDLQSIRALCDFLRKEYGGLDVLVDNAAIAFQLDNPTPFHVQAELTMKTNFMGNRNVCT 489
           + D +SIRA  +    E   L +L++NA +     + T    +  L +  N +G+  +  
Sbjct: 99  LSDTKSIRAFAEGFLAEEKQLHILINNAGVMLCPYSKTADGFETHLAV--NHLGHFLLTH 156

Query: 490 ELLPLIK--LQGKVVNVSN 540
            LL  +K     +VVN+S+
Sbjct: 157 LLLGRLKESAPARVVNLSS 175


>ref|XP_592820.2| PREDICTED: similar to retinol dehydrogenase 11 (predicted) [Bos
           taurus]
          Length = 377

 Score = 56.2 bits (134), Expect = 5e-08
 Identities = 49/139 (35%), Positives = 68/139 (48%), Gaps = 4/139 (2%)
 Frame = +1

Query: 136 RVALVTGANKGIGFAIVRDLCRQFAGDVVLTARDVARGQAAVKQLQAEGLSPR--FHQLD 309
           R A+VTGAN GIG     +L R+ A  VVL  R   RG+AA   L+ E  +    F  LD
Sbjct: 37  RTAVVTGANSGIGKMTALELARRGAR-VVLACRSRERGEAAAFDLRQESGNNEVIFMALD 95

Query: 310 IIDLQSIRALCDFLRKEYGGLDVLVDNAAIAFQLDNPTPFHVQAELTMKTNFMGNRNVCT 489
           +  L S+RA           LD+L+ NA I+       PF+    L ++ N +G   +  
Sbjct: 96  LASLASVRAFATAFLSSEPRLDILIHNAGISSCGRTREPFN----LLLRVNHIGPFLLTH 151

Query: 490 ELLPLIKLQ--GKVVNVSN 540
            LLP +K     +VV VS+
Sbjct: 152 LLLPRLKTSAPSRVVVVSS 170


>ref|XP_584629.2| PREDICTED: similar to Retinol dehydrogenase 13, partial [Bos
           taurus]
          Length = 148

 Score = 54.7 bits (130), Expect = 1e-07
 Identities = 30/90 (33%), Positives = 55/90 (61%), Gaps = 2/90 (2%)
 Frame = +1

Query: 136 RVALVTGANKGIGFAIVRDLCRQFAGDVVLTARDVARGQAAVKQLQAEGLSPRFH--QLD 309
           +  +VTGAN GIG     +L ++  G+++L  RD+ + +AA K+++ E L+ R +   LD
Sbjct: 39  KTVIVTGANTGIGKQTALELAKR-GGNIILACRDMEKCEAAAKEIRGETLNHRVNARHLD 97

Query: 310 IIDLQSIRALCDFLRKEYGGLDVLVDNAAI 399
           +  L+SIR     + +E   + +L++NAA+
Sbjct: 98  LASLKSIREFAAKVTEEEEHVHILINNAAV 127


>ref|NP_777126.1| short-chain dehydrogenase/reductase [Bos taurus]
          Length = 270

 Score = 53.9 bits (128), Expect = 2e-07
 Identities = 46/154 (29%), Positives = 70/154 (45%), Gaps = 2/154 (1%)
 Frame = +1

Query: 136 RVALVTGANKGIGFAIVRDLCRQFAGDVVLTARDVARGQAAVKQLQAEGLSPRFHQLDII 315
           +V +VTG  +GIG  IVR      A  VV+  +D ARG+A  ++L        F   D+ 
Sbjct: 10  KVVIVTGGGRGIGAGIVRAFVESGA-QVVICDKDEARGRAVERELP----GTVFLLCDVT 64

Query: 316 DLQSIRALCDFLRKEYGGLDVLVDNAAIAFQLDNPTPFHVQA-ELTMKTNFMGNRNVCTE 492
             + +R L     + +G LD +V+NA        P     Q     ++ N +G   +   
Sbjct: 65  REEDVRTLVSETIRRFGRLDCIVNNAGYHPPPQWPEETSAQGFRQLLELNLLGTYTLTKL 124

Query: 493 LLP-LIKLQGKVVNVSNP*GVRTPLQVQP*ICTK 591
            LP L K +G V+N+S+  G     Q  P + TK
Sbjct: 125 ALPHLRKSRGNVINISSLVGAIGQSQAVPYVATK 158


  Database: RefSeqBP
    Posted date:  Aug 1, 2006  7:14 PM
  Number of letters in database: 16,112,626
  Number of sequences in database:  33,508
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 38,086,471
Number of Sequences: 33508
Number of extensions: 1109701
Number of successful extensions: 5668
Number of sequences better than 1.0e-05: 10
Number of HSP's better than  0.0 without gapping: 4432
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5597
length of database: 16,112,626
effective HSP length: 103
effective length of database: 12,661,302
effective search space used: 3494519352
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

Search to RefSeqCP

BLASTX 2.2.10 [Oct-19-2004]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20060611S-058412
         (1140 letters)

Database: RefSeqCP 
           33,732 sequences; 19,266,565 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|XP_852675.1| PREDICTED: similar to Carbonyl reductase [NADPH...   236   4e-62
Alignment   gi|XP_544873.2| PREDICTED: similar to carbonyl reductase 3 [Can...   223   9e-59
Alignment   gi|XP_537903.1| PREDICTED: similar to Carbonyl reductase [NADPH...   209   4e-54
Alignment   gi|XP_535589.2| PREDICTED: similar to Carbonyl reductase [NADPH...   207   2e-53
Alignment   gi|XP_533000.2| PREDICTED: similar to Retinol dehydrogenase 12 ...    68   2e-11
Alignment   gi|XP_547738.2| PREDICTED: similar to dehydrogenase/reductase (...    57   4e-08
Alignment   gi|XP_548293.2| PREDICTED: similar to retinol dehydrogenase 11 ...    56   7e-08
Alignment   gi|XP_854127.1| PREDICTED: similar to Retinol dehydrogenase 13 ...    55   1e-07
Alignment   gi|XP_547866.2| PREDICTED: similar to retinol dehydrogenase 12 ...    55   1e-07
Alignment   gi|XP_540096.2| PREDICTED: similar to retinol dehydrogenase 14 ...    52   8e-07

>ref|XP_852675.1| PREDICTED: similar to Carbonyl reductase [NADPH] 1 (NADPH-dependent
           carbonyl reductase 1) (Prostaglandin-E(2) 9-reductase)
           (Prostaglandin 9-ketoreductase) (15-hydroxyprostaglandin
           dehydrogenase [NADP+]) [Canis familiaris]
          Length = 277

 Score =  236 bits (601), Expect = 4e-62
 Identities = 125/182 (68%), Positives = 147/182 (80%)
 Frame = +1

Query: 121 MSSNTRVALVTGANKGIGFAIVRDLCRQFAGDVVLTARDVARGQAAVKQLQAEGLSPRFH 300
           MS+ +RVALVTGANKGIGFAI R+LCRQF+GDVVLTARD ARG+AAV+QLQAEGLSPRFH
Sbjct: 1   MSAASRVALVTGANKGIGFAIARELCRQFSGDVVLTARDEARGRAAVQQLQAEGLSPRFH 60

Query: 301 QLDIIDLQSIRALCDFLRKEYGGLDVLVDNAAIAFQLDNPTPFHVQAELTMKTNFMGNRN 480
            LDI DLQSIRAL DFLRKEYGGLDVLV+NA IAF+ ++PTPFH+QAE+TMKTNF G R+
Sbjct: 61  LLDIDDLQSIRALRDFLRKEYGGLDVLVNNAGIAFKTNDPTPFHIQAEVTMKTNFFGTRD 120

Query: 481 VCTELLPLIKLQGKVVNVSNP*GVRTPLQVQP*ICTKIPKMKPPQRKTRGGLLNNFLEKT 660
           VCTELLPL+K QG+VVNVS+   VR      P +  K  + +    +   GL+N F+E T
Sbjct: 121 VCTELLPLMKPQGRVVNVSSVVSVRALKSCSPELQQKF-RSEAITEEELVGLMNKFVEDT 179

Query: 661 KK 666
           KK
Sbjct: 180 KK 181


>ref|XP_544873.2| PREDICTED: similar to carbonyl reductase 3 [Canis familiaris]
          Length = 484

 Score =  223 bits (567), Expect(2) = 9e-59
 Identities = 113/151 (74%), Positives = 130/151 (86%)
 Frame = +1

Query: 88  SPRQSTYTTPAMSSNTRVALVTGANKGIGFAIVRDLCRQFAGDVVLTARDVARGQAAVKQ 267
           SPR      PAMSS +RVALVTGAN+GIGFAI R+LCRQF+GDVVLTARD ARG+AAV+Q
Sbjct: 197 SPRAPGPPLPAMSSCSRVALVTGANRGIGFAIARELCRQFSGDVVLTARDEARGRAAVQQ 256

Query: 268 LQAEGLSPRFHQLDIIDLQSIRALCDFLRKEYGGLDVLVDNAAIAFQLDNPTPFHVQAEL 447
           LQAEGLSPRFH LDI DLQSIRAL DFLRKEYGGL+VLV+NA IAF+ D+PTPF +QAE+
Sbjct: 257 LQAEGLSPRFHLLDIDDLQSIRALRDFLRKEYGGLNVLVNNAGIAFKPDDPTPFDIQAEI 316

Query: 448 TMKTNFMGNRNVCTELLPLIKLQGKVVNVSN 540
           T+KTNF   RNVC ELLP+IK  G+VVN+S+
Sbjct: 317 TLKTNFFATRNVCNELLPIIKPHGRVVNISS 347



 Score = 23.9 bits (50), Expect(2) = 9e-59
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = +2

Query: 539 TLKGSEPLYKCSPEFAQKFQK*NLPKE 619
           +L+GS+ L  CS +  +KFQ   L +E
Sbjct: 347 SLEGSKALENCSADLQKKFQCETLTEE 373


>ref|XP_537903.1| PREDICTED: similar to Carbonyl reductase [NADPH] 1 (NADPH-dependent
           carbonyl reductase 1) (Prostaglandin-E(2) 9-reductase)
           (Prostaglandin 9-ketoreductase) (15-hydroxyprostaglandin
           dehydrogenase [NADP+]) [Canis familiaris]
          Length = 296

 Score =  209 bits (532), Expect = 4e-54
 Identities = 113/189 (59%), Positives = 136/189 (71%)
 Frame = +1

Query: 121 MSSNTRVALVTGANKGIGFAIVRDLCRQFAGDVVLTARDVARGQAAVKQLQAEGLSPRFH 300
           MS   RVA+VTGANKG+GFAI RDLCR F GDV+LT+RD ARG+AAV+ L+AEGLSPRFH
Sbjct: 1   MSLALRVAVVTGANKGLGFAITRDLCRNFPGDVILTSRDEARGRAAVQHLKAEGLSPRFH 60

Query: 301 QLDIIDLQSIRALCDFLRKEYGGLDVLVDNAAIAFQLDNPTPFHVQAELTMKTNFMGNRN 480
            LDI +LQSIRAL DFL +EYGGLDVLV+NA I F  D+PTP H+QAE+T+KTNF G R+
Sbjct: 61  LLDIDNLQSIRALRDFLWEEYGGLDVLVNNAGIVFTPDDPTPLHIQAEVTLKTNFFGTRD 120

Query: 481 VCTELLPLIKLQGKVVNVSNP*GVRTPLQVQP*ICTKIPKMKPPQRKTRGGLLNNFLEKT 660
           +CTELLPL+K QG+VVNVS+        Q  P +  K       + +  G L+N FLE  
Sbjct: 121 ICTELLPLVKPQGRVVNVSSIMSFLALKQCSPELQQKFTSETITEEEL-GMLMNKFLEDV 179

Query: 661 KKRGAPKGG 687
           K     K G
Sbjct: 180 KNGVHKKEG 188


>ref|XP_535589.2| PREDICTED: similar to Carbonyl reductase [NADPH] 1 (NADPH-dependent
           carbonyl reductase 1) (Prostaglandin-E(2) 9-reductase)
           (Prostaglandin 9-ketoreductase) (15-hydroxyprostaglandin
           dehydrogenase [NADP+]) [Canis familiaris]
          Length = 292

 Score =  207 bits (526), Expect = 2e-53
 Identities = 115/189 (60%), Positives = 136/189 (71%)
 Frame = +1

Query: 121 MSSNTRVALVTGANKGIGFAIVRDLCRQFAGDVVLTARDVARGQAAVKQLQAEGLSPRFH 300
           MSS  RVA+VTGANKG+GFAI+RDLCR F+GDVVLTARD ARG+AAV+QLQ++GLSPRFH
Sbjct: 1   MSSAPRVAVVTGANKGLGFAIMRDLCRNFSGDVVLTARDEARGRAAVQQLQSKGLSPRFH 60

Query: 301 QLDIIDLQSIRALCDFLRKEYGGLDVLVDNAAIAFQLDNPTPFHVQAELTMKTNFMGNRN 480
            LDI DLQSI  L DFL KEY GLDVLV+NA I F   +PTP  +QAE+T+KTNF G RN
Sbjct: 61  LLDIDDLQSICTLRDFLCKEYRGLDVLVNNAGINFDTGDPTPLPIQAEVTLKTNFFGTRN 120

Query: 481 VCTELLPLIKLQGKVVNVSNP*GVRTPLQVQP*ICTKIPKMKPPQRKTRGGLLNNFLEKT 660
           VC ELLPL+K QG+VVNVS+  G  T  Q  P +  K       + +  G L+N F+E  
Sbjct: 121 VCRELLPLMKPQGRVVNVSSVMGFVTLKQCSPELQQKFTSEAITEEEL-GMLMNKFVEDV 179

Query: 661 KKRGAPKGG 687
           K     K G
Sbjct: 180 KNGVHKKEG 188


>ref|XP_533000.2| PREDICTED: similar to Retinol dehydrogenase 12 [Canis familiaris]
          Length = 596

 Score = 67.8 bits (164), Expect = 2e-11
 Identities = 50/139 (35%), Positives = 82/139 (58%), Gaps = 4/139 (2%)
 Frame = +1

Query: 136 RVALVTGANKGIGFAIVRDLCRQFAGDVVLTARDVARGQAAVKQLQ--AEGLSPRFHQLD 309
           + A+VTGAN GIG A+ ++L R+ A  V+L  R+  RGQ A+ ++Q  ++G      Q+D
Sbjct: 316 KTAVVTGANSGIGKAVCQELARRGAR-VILACRNWERGQKALAEIQVASKGTCLLLGQVD 374

Query: 310 IIDLQSIRALCDFLRKEYGGLDVLVDNAAIAFQLDNPTPFHVQAELTMKTNFMGNRNVCT 489
           +  + SIR+   +L +EY  + +LV+NAAI+      TP  +  +LT  TN++G   +  
Sbjct: 375 LSSMASIRSFARWLLQEYPEIHLLVNNAAISGFPKTLTPEGL--DLTFATNYVGPFLLTN 432

Query: 490 ELLPLIKLQG--KVVNVSN 540
            L   ++  G  +VVNVS+
Sbjct: 433 LLQGALQRAGSARVVNVSS 451


>ref|XP_547738.2| PREDICTED: similar to dehydrogenase/reductase (SDR family) member 2
           isoform 2 [Canis familiaris]
          Length = 370

 Score = 56.6 bits (135), Expect = 4e-08
 Identities = 39/88 (44%), Positives = 48/88 (54%)
 Frame = +1

Query: 136 RVALVTGANKGIGFAIVRDLCRQFAGDVVLTARDVARGQAAVKQLQAEGLSPRFHQLDII 315
           RVA+VTGA  GIGFAI R L R  A  VV+++R       AV  LQ EGLS       + 
Sbjct: 126 RVAVVTGATDGIGFAIARRLARDGA-HVVVSSRKQHNVDRAVAALQGEGLSVTGTVCHVG 184

Query: 316 DLQSIRALCDFLRKEYGGLDVLVDNAAI 399
             +    L   + + YGGLD LV NAA+
Sbjct: 185 KAEDRERLVATVLEHYGGLDFLVCNAAV 212


>ref|XP_548293.2| PREDICTED: similar to retinol dehydrogenase 11 (predicted) [Canis
           familiaris]
          Length = 377

 Score = 55.8 bits (133), Expect = 7e-08
 Identities = 49/139 (35%), Positives = 68/139 (48%), Gaps = 4/139 (2%)
 Frame = +1

Query: 136 RVALVTGANKGIGFAIVRDLCRQFAGDVVLTARDVARGQAAVKQLQAEGLSPR--FHQLD 309
           R A+VTGAN GIG     +L R+ A  VVL  R   RG+AA   L+ E  +    F  LD
Sbjct: 37  RTAVVTGANSGIGKMTALELARRGAR-VVLACRSRERGEAAAFDLRQESGNNEVIFMALD 95

Query: 310 IIDLQSIRALCDFLRKEYGGLDVLVDNAAIAFQLDNPTPFHVQAELTMKTNFMGNRNVCT 489
           +  L S+RA           LD+L+ NA I+       PF+    L ++ N +G   +  
Sbjct: 96  LASLASVRAFATAFLSSEPRLDILIHNAGISSCGRTHKPFN----LLLRVNHIGPFLLTH 151

Query: 490 ELLPLIK--LQGKVVNVSN 540
            LLP +K     +VV VS+
Sbjct: 152 LLLPRLKTCAPSRVVVVSS 170


>ref|XP_854127.1| PREDICTED: similar to Retinol dehydrogenase 13 [Canis familiaris]
          Length = 334

 Score = 55.1 bits (131), Expect = 1e-07
 Identities = 32/90 (35%), Positives = 54/90 (60%), Gaps = 2/90 (2%)
 Frame = +1

Query: 136 RVALVTGANKGIGFAIVRDLCRQFAGDVVLTARDVARGQAAVKQLQAEGLSPRFH--QLD 309
           +  +VTGAN GIG     +L R+  G+++L  RD+ + +AA K+++ E L+ R     LD
Sbjct: 39  KTVIVTGANTGIGKQTALELARR-GGNIILACRDMEKCEAAAKEIRGETLNHRVSAWHLD 97

Query: 310 IIDLQSIRALCDFLRKEYGGLDVLVDNAAI 399
           +  L+SIR     + +E   + +LV+NAA+
Sbjct: 98  LASLKSIREFAAKIIEEEEQVHILVNNAAV 127


>ref|XP_547866.2| PREDICTED: similar to retinol dehydrogenase 12 (all-trans and
           9-cis) [Canis familiaris]
          Length = 303

 Score = 55.1 bits (131), Expect = 1e-07
 Identities = 43/142 (30%), Positives = 75/142 (52%), Gaps = 7/142 (4%)
 Frame = +1

Query: 136 RVALVTGANKGIGFAIVRDLCRQFAGDVVLTARDVARGQAAVKQLQAEGLSPR--FHQLD 309
           +V ++TGAN GIG    R+L R+ A  V +  RDV +G++A  +++A+  + +    +LD
Sbjct: 27  KVVVITGANTGIGKETARELARRGA-RVYIACRDVLKGESAASEIRADTKNSQVLVRKLD 85

Query: 310 IIDLQSIRALCDFLRKEYGGLDVLVDNAAIAFQLDNPTPFHVQA---ELTMKTNFMGNRN 480
           + D +SIRA  +    E   L +L++NA +        P+   A   E  +  N +G+  
Sbjct: 86  LSDTKSIRAFAEGFLAEEKQLHILINNAGVMM-----CPYSKTADGFETHLGVNHLGHFL 140

Query: 481 VCTELLPLIK--LQGKVVNVSN 540
           +   LL  +K     +VVN+S+
Sbjct: 141 LTHLLLERLKESTPARVVNLSS 162


>ref|XP_540096.2| PREDICTED: similar to retinol dehydrogenase 14 (all-trans and
           9-cis) isoform 1 [Canis familiaris]
          Length = 336

 Score = 52.4 bits (124), Expect = 8e-07
 Identities = 37/103 (35%), Positives = 51/103 (49%), Gaps = 15/103 (14%)
 Frame = +1

Query: 136 RVALVTGANKGIGFAIVRDLCRQFAGDVVLTARDVARGQAAVKQL-----QAEGLSPR-- 294
           +  L+TGAN G+G A    L R     V++  RD AR + A  QL     QA G  P   
Sbjct: 44  KTVLITGANSGLGRATAAALLR-LGARVIMGCRDRARAEEAAGQLRRELRQAGGREPGSD 102

Query: 295 --------FHQLDIIDLQSIRALCDFLRKEYGGLDVLVDNAAI 399
                     +LD+  L+S+RA C  + +E   LDVL++NA I
Sbjct: 103 VGAAGELVVRELDLASLRSVRAFCQEVLQEEPRLDVLINNAGI 145


  Database: RefSeqCP
    Posted date:  Aug 1, 2006  9:25 PM
  Number of letters in database: 19,266,565
  Number of sequences in database:  33,732
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 44,717,371
Number of Sequences: 33732
Number of extensions: 1303205
Number of successful extensions: 6617
Number of sequences better than 1.0e-05: 10
Number of HSP's better than  0.0 without gapping: 5167
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6544
length of database: 19,266,565
effective HSP length: 105
effective length of database: 15,724,705
effective search space used: 4308569170
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

Search to RefSeqHP

BLASTX 2.2.10 [Oct-19-2004]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20060611S-058412
         (1140 letters)

Database: RefSeqHP 
           39,411 sequences; 17,774,539 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_001748.1| carbonyl reductase 1 [Homo sapiens]                  237   1e-62
Alignment   gi|NP_001227.1| carbonyl reductase 3 [Homo sapiens]                  215   5e-56
Alignment   gi|XP_371503.3| PREDICTED: similar to short-chain dehydrogenase...    56   6e-08
Alignment   gi|XP_947127.1| PREDICTED: similar to short-chain dehydrogenase...    56   6e-08
Alignment   gi|XP_950347.1| PREDICTED: similar to dehydrogenase/reductase (...    55   1e-07
Alignment   gi|NP_689656.1| retinol dehydrogenase 12 (all-trans and 9-cis) ...    54   3e-07
Alignment   gi|NP_065956.1| retinol dehydrogenase 14 (all-trans and 9-cis) ...    53   4e-07
Alignment   gi|NP_057110.2| androgen-regulated short-chain dehydrogenase/re...    52   9e-07
Alignment   gi|NP_932349.1| dehydrogenase/reductase (SDR family) member 4 l...    52   9e-07
Alignment   gi|XP_950350.1| PREDICTED: similar to dehydrogenase/reductase (...    52   9e-07

>ref|NP_001748.1| carbonyl reductase 1 [Homo sapiens]
          Length = 277

 Score =  237 bits (605), Expect = 1e-62
 Identities = 129/189 (68%), Positives = 146/189 (77%)
 Frame = +1

Query: 121 MSSNTRVALVTGANKGIGFAIVRDLCRQFAGDVVLTARDVARGQAAVKQLQAEGLSPRFH 300
           MSS   VALVTG NKGIG AIVRDLCR F+GDVVLTARDV RGQAAV+QLQAEGLSPRFH
Sbjct: 1   MSSGIHVALVTGGNKGIGLAIVRDLCRLFSGDVVLTARDVTRGQAAVQQLQAEGLSPRFH 60

Query: 301 QLDIIDLQSIRALCDFLRKEYGGLDVLVDNAAIAFQLDNPTPFHVQAELTMKTNFMGNRN 480
           QLDI DLQSIRAL DFLRKEYGGLDVLV+NA IAF++ +PTPFH+QAE+TMKTNF G R+
Sbjct: 61  QLDIDDLQSIRALRDFLRKEYGGLDVLVNNAGIAFKVADPTPFHIQAEVTMKTNFFGTRD 120

Query: 481 VCTELLPLIKLQGKVVNVSNP*GVRTPLQVQP*ICTKIPKMKPPQRKTRGGLLNNFLEKT 660
           VCTELLPLIK QG+VVNVS+   VR      P +  K  + +    +   GL+N F+E T
Sbjct: 121 VCTELLPLIKPQGRVVNVSSIMSVRALKSCSPELQQKF-RSETITEEELVGLMNKFVEDT 179

Query: 661 KKRGAPKGG 687
           KK    K G
Sbjct: 180 KKGVHQKEG 188


>ref|NP_001227.1| carbonyl reductase 3 [Homo sapiens]
          Length = 277

 Score =  215 bits (548), Expect = 5e-56
 Identities = 106/140 (75%), Positives = 126/140 (90%)
 Frame = +1

Query: 121 MSSNTRVALVTGANKGIGFAIVRDLCRQFAGDVVLTARDVARGQAAVKQLQAEGLSPRFH 300
           MSS +RVALVTGAN+GIG AI R+LCRQF+GDVVLTARDVARGQAAV+QLQAEGLSPRFH
Sbjct: 1   MSSCSRVALVTGANRGIGLAIARELCRQFSGDVVLTARDVARGQAAVQQLQAEGLSPRFH 60

Query: 301 QLDIIDLQSIRALCDFLRKEYGGLDVLVDNAAIAFQLDNPTPFHVQAELTMKTNFMGNRN 480
           QLDI DLQSIRAL DFLRKEYGGL+VLV+NAA+AF+ D+P PF ++AE+T+KTNF   RN
Sbjct: 61  QLDIDDLQSIRALRDFLRKEYGGLNVLVNNAAVAFKSDDPMPFDIKAEMTLKTNFFATRN 120

Query: 481 VCTELLPLIKLQGKVVNVSN 540
           +C ELLP++K  G+VVN+S+
Sbjct: 121 MCNELLPIMKPHGRVVNISS 140


>ref|XP_371503.3| PREDICTED: similar to short-chain dehydrogenase/reductase 1 [Homo
           sapiens]
          Length = 891

 Score = 55.8 bits (133), Expect = 6e-08
 Identities = 39/115 (33%), Positives = 65/115 (56%), Gaps = 3/115 (2%)
 Frame = +1

Query: 136 RVALVTGANKGIGFAIVRDLCRQFAGDVVLTARDVARGQAAVKQLQAEGLSPR--FHQLD 309
           ++A+VTGAN GIG  + +DL R     V+LT +    GQ A+ ++QA   S R    ++D
Sbjct: 603 KIAIVTGANSGIGKVVSQDLAR-CGAQVILTCQSRECGQQALAEIQAASNSNRLLLGEVD 661

Query: 310 IIDLQSIRALCDFLRKEYGGLDVLVDNAAIAFQLDNP-TPFHVQAELTMKTNFMG 471
           +  + SIR+    L +E   + +LV+NA ++  +    TP  +  +LT  TN++G
Sbjct: 662 LSSMTSIRSFARRLLQENPEIHLLVNNAGVSGMIPKTLTPGGL--DLTFVTNYVG 714


>ref|XP_947127.1| PREDICTED: similar to short-chain dehydrogenase/reductase 1 [Homo
           sapiens]
          Length = 916

 Score = 55.8 bits (133), Expect = 6e-08
 Identities = 39/115 (33%), Positives = 65/115 (56%), Gaps = 3/115 (2%)
 Frame = +1

Query: 136 RVALVTGANKGIGFAIVRDLCRQFAGDVVLTARDVARGQAAVKQLQAEGLSPR--FHQLD 309
           ++A+VTGAN GIG  + +DL R     V+LT +    GQ A+ ++QA   S R    ++D
Sbjct: 628 KIAIVTGANSGIGKVVSQDLAR-CGAQVILTCQSRECGQQALAEIQAASNSNRLLLGEVD 686

Query: 310 IIDLQSIRALCDFLRKEYGGLDVLVDNAAIAFQLDNP-TPFHVQAELTMKTNFMG 471
           +  + SIR+    L +E   + +LV+NA ++  +    TP  +  +LT  TN++G
Sbjct: 687 LSSMTSIRSFARRLLQENPEIHLLVNNAGVSGMIPKTLTPGGL--DLTFVTNYVG 739


>ref|XP_950347.1| PREDICTED: similar to dehydrogenase/reductase (SDR family) member 4
           like 2 isoform 12 [Homo sapiens]
          Length = 186

 Score = 55.1 bits (131), Expect = 1e-07
 Identities = 46/132 (34%), Positives = 63/132 (47%), Gaps = 3/132 (2%)
 Frame = +1

Query: 136 RVALVTGANKGIGFAIVRDLCRQFAGDVVLTARDVARGQAAVKQLQAEGLSPRFHQLDII 315
           +VALVT +  GIGFAI R L +  A  VV+++R       AV  LQ EGLS       + 
Sbjct: 31  KVALVTASTDGIGFAIARRLAQDRA-HVVVSSRKQQNVDQAVATLQGEGLSVTGTVCHVG 89

Query: 316 DLQSIRALCDFLRKEYGGLDVLVDNAAIAFQLDNP---TPFHVQAELTMKTNFMGNRNVC 486
             +    L     K +GG+D+LV NAA+     NP   +   V  E+  K  F G   +C
Sbjct: 90  KAEDRERLVAMAVKLHGGIDILVSNAAV-----NPFFGSLMDVTEEVWDKGWFSGVPGLC 144

Query: 487 TELLPLIKLQGK 522
           + L     L G+
Sbjct: 145 SSLQATSSLDGQ 156


>ref|NP_689656.1| retinol dehydrogenase 12 (all-trans and 9-cis) [Homo sapiens]
          Length = 316

 Score = 53.5 bits (127), Expect = 3e-07
 Identities = 42/142 (29%), Positives = 74/142 (52%), Gaps = 7/142 (4%)
 Frame = +1

Query: 136 RVALVTGANKGIGFAIVRDLCRQFAGDVVLTARDVARGQAAVKQLQAEGLSPRF--HQLD 309
           +V ++TGAN GIG    R+L  + A  V +  RDV +G++A  +++ +  + +    +LD
Sbjct: 40  KVVVITGANTGIGKETARELASRGAR-VYIACRDVLKGESAASEIRVDTKNSQVLVRKLD 98

Query: 310 IIDLQSIRALCDFLRKEYGGLDVLVDNAAIAFQLDNPTPFHVQA---ELTMKTNFMGNRN 480
           + D +SIRA  +    E   L +L++NA +        P+   A   E  +  N +G+  
Sbjct: 99  LSDTKSIRAFAEGFLAEEKQLHILINNAGVMM-----CPYSKTADGFETHLGVNHLGHFL 153

Query: 481 VCTELLPLIKLQ--GKVVNVSN 540
           +   LL  +K+    +VVNVS+
Sbjct: 154 LTYLLLEQLKVSAPARVVNVSS 175


>ref|NP_065956.1| retinol dehydrogenase 14 (all-trans and 9-cis) [Homo sapiens]
          Length = 336

 Score = 53.1 bits (126), Expect = 4e-07
 Identities = 36/103 (34%), Positives = 52/103 (50%), Gaps = 15/103 (14%)
 Frame = +1

Query: 136 RVALVTGANKGIGFAIVRDLCRQFAGDVVLTARDVARGQAAVKQLQAE-------GLSPR 294
           +  L+TGAN G+G A   +L R     V++  RD AR + A  QL+ E       G  P 
Sbjct: 44  KTVLITGANSGLGRATAAELLR-LGARVIMGCRDRARAEEAAGQLRRELRQAAECGPEPG 102

Query: 295 F--------HQLDIIDLQSIRALCDFLRKEYGGLDVLVDNAAI 399
                     +LD+  L+S+RA C  + +E   LDVL++NA I
Sbjct: 103 VSGVGELIVRELDLASLRSVRAFCQEMLQEEPRLDVLINNAGI 145


>ref|NP_057110.2| androgen-regulated short-chain dehydrogenase/reductase 1 [Homo
           sapiens]
          Length = 318

 Score = 52.0 bits (123), Expect = 9e-07
 Identities = 44/142 (30%), Positives = 72/142 (50%), Gaps = 7/142 (4%)
 Frame = +1

Query: 136 RVALVTGANKGIGFAIVRDLCRQFAGDVVLTARDVARGQAAVKQLQAEGLSPRF--HQLD 309
           +V +VTGAN GIG    ++L ++ A  V L  RDV +G+   K++Q    + +    +LD
Sbjct: 42  KVVVVTGANTGIGKETAKELAQRGAR-VYLACRDVEKGELVAKEIQTTTGNQQVLVRKLD 100

Query: 310 IIDLQSIRALCDFLRKEYGGLDVLVDNAAIAFQLDNPTPFHVQA---ELTMKTNFMGNRN 480
           + D +SIRA       E   L VL++NA +        P+   A   E+ +  N +G+  
Sbjct: 101 LSDTKSIRAFAKGFLAEEKHLHVLINNAGVMM-----CPYSKTADGFEMHIGVNHLGHFL 155

Query: 481 VCTELLPLIK--LQGKVVNVSN 540
           +   LL  +K     ++VNVS+
Sbjct: 156 LTHLLLEKLKESAPSRIVNVSS 177


>ref|NP_932349.1| dehydrogenase/reductase (SDR family) member 4 like 2 [Homo sapiens]
          Length = 230

 Score = 52.0 bits (123), Expect = 9e-07
 Identities = 35/88 (39%), Positives = 47/88 (53%)
 Frame = +1

Query: 136 RVALVTGANKGIGFAIVRDLCRQFAGDVVLTARDVARGQAAVKQLQAEGLSPRFHQLDII 315
           +VALVT +  GIGFAI R L +  A  VV+++R       AV  LQ EGLS       + 
Sbjct: 31  KVALVTASTDGIGFAIARRLAQDRA-HVVVSSRKQQNVDQAVATLQGEGLSVTGTVCHVG 89

Query: 316 DLQSIRALCDFLRKEYGGLDVLVDNAAI 399
             +    L     K +GG+D+LV NAA+
Sbjct: 90  KAEDRERLVAMAVKLHGGIDILVSNAAV 117


>ref|XP_950350.1| PREDICTED: similar to dehydrogenase/reductase (SDR family) member 4
           like 2 isoform 14 [Homo sapiens]
          Length = 190

 Score = 52.0 bits (123), Expect = 9e-07
 Identities = 35/88 (39%), Positives = 47/88 (53%)
 Frame = +1

Query: 136 RVALVTGANKGIGFAIVRDLCRQFAGDVVLTARDVARGQAAVKQLQAEGLSPRFHQLDII 315
           +VALVT +  GIGFAI R L +  A  VV+++R       AV  LQ EGLS       + 
Sbjct: 31  KVALVTASTDGIGFAIARRLAQDRA-HVVVSSRKQQNVDQAVATLQGEGLSVTGTVCHVG 89

Query: 316 DLQSIRALCDFLRKEYGGLDVLVDNAAI 399
             +    L     K +GG+D+LV NAA+
Sbjct: 90  KAEDRERLVAMAVKLHGGIDILVSNAAV 117


  Database: RefSeqHP
    Posted date:  Aug 2, 2006 12:57 AM
  Number of letters in database: 17,774,539
  Number of sequences in database:  39,411
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 43,422,045
Number of Sequences: 39411
Number of extensions: 1319565
Number of successful extensions: 7246
Number of sequences better than 1.0e-05: 10
Number of HSP's better than  0.0 without gapping: 5169
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7139
length of database: 17,774,539
effective HSP length: 104
effective length of database: 13,675,795
effective search space used: 3760843625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

Search to RefSeqMP

BLASTX 2.2.10 [Oct-19-2004]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20060611S-058412
         (1140 letters)

Database: RefSeqMP 
           45,328 sequences; 21,768,885 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_766635.1| carbonyl reductase 3 [Mus musculus]                  220   2e-57
Alignment   gi|NP_031646.1| carbonyl reductase 1 [Mus musculus]                  213   4e-55
Alignment   gi|XP_487442.1| PREDICTED: similar to Carbonyl reductase [NADPH...   210   3e-54
Alignment   gi|XP_989090.1| PREDICTED: similar to Carbonyl reductase [NADPH...   210   3e-54
Alignment   gi|XP_359206.3| PREDICTED: similar to Carbonyl reductase [NADPH...   197   2e-50
Alignment   gi|NP_780581.1| retinol dehydrogenase 13 (all-trans and 9-cis) ...    60   4e-09
Alignment   gi|NP_067532.2| short-chain dehydrogenase/reductase 1 [Mus musc...    57   4e-08
Alignment   gi|NP_076186.1| alcohol dehydrogenase PAN2 [Mus musculus]             56   8e-08
Alignment   gi|NP_084293.1| retinol dehydrogenase 12 [Mus musculus]               54   2e-07
Alignment   gi|NP_001028498.1| dehydrogenase/reductase (SDR family) X chrom...    54   3e-07

>ref|NP_766635.1| carbonyl reductase 3 [Mus musculus]
          Length = 277

 Score =  220 bits (560), Expect = 2e-57
 Identities = 110/145 (75%), Positives = 130/145 (89%)
 Frame = +1

Query: 121 MSSNTRVALVTGANKGIGFAIVRDLCRQFAGDVVLTARDVARGQAAVKQLQAEGLSPRFH 300
           MSS +RVALVTGANKGIGFAI RDLCR+F+GDVVLTARD ARG+AAV+QLQAEGLSPRFH
Sbjct: 1   MSSCSRVALVTGANKGIGFAITRDLCRKFSGDVVLTARDEARGRAAVQQLQAEGLSPRFH 60

Query: 301 QLDIIDLQSIRALCDFLRKEYGGLDVLVDNAAIAFQLDNPTPFHVQAELTMKTNFMGNRN 480
           QLDI D QSIRAL DFLRKEYGGL+VLV+NA IAF++D+PTPF +QAE+T+KTNF   RN
Sbjct: 61  QLDIDDPQSIRALRDFLRKEYGGLNVLVNNAGIAFRMDDPTPFDIQAEVTLKTNFFATRN 120

Query: 481 VCTELLPLIKLQGKVVNVSNP*GVR 555
           VCTELLP++K  G+VVN+S+  G++
Sbjct: 121 VCTELLPIMKPHGRVVNISSLQGLK 145


>ref|NP_031646.1| carbonyl reductase 1 [Mus musculus]
          Length = 277

 Score =  213 bits (541), Expect = 4e-55
 Identities = 115/182 (63%), Positives = 140/182 (76%)
 Frame = +1

Query: 121 MSSNTRVALVTGANKGIGFAIVRDLCRQFAGDVVLTARDVARGQAAVKQLQAEGLSPRFH 300
           MSS+  VALVTGANKGIGFAI RDLCR+F+GDVVL ARD  RGQ AV++LQAEGLSPRFH
Sbjct: 1   MSSSRPVALVTGANKGIGFAITRDLCRKFSGDVVLAARDEERGQTAVQKLQAEGLSPRFH 60

Query: 301 QLDIIDLQSIRALCDFLRKEYGGLDVLVDNAAIAFQLDNPTPFHVQAELTMKTNFMGNRN 480
           QLDI + QSIRAL DFL KEYGGLDVLV+ A IAF++++ TPFH+QAE+TM+TNF G R+
Sbjct: 61  QLDIDNPQSIRALRDFLLKEYGGLDVLVNKAGIAFKVNDDTPFHIQAEVTMETNFFGTRD 120

Query: 481 VCTELLPLIKLQGKVVNVSNP*GVRTPLQVQP*ICTKIPKMKPPQRKTRGGLLNNFLEKT 660
           VC ELLPLIK QG+VVNVS+   +R     +  +  K  + +    +   GL+N F+E T
Sbjct: 121 VCKELLPLIKPQGRVVNVSSMVSLRALKNCRLELQQKF-RSETITEEELVGLMNKFVEDT 179

Query: 661 KK 666
           KK
Sbjct: 180 KK 181


>ref|XP_487442.1| PREDICTED: similar to Carbonyl reductase [NADPH] 1 (NADPH-dependent
           carbonyl reductase 1) [Mus musculus]
          Length = 277

 Score =  210 bits (534), Expect = 3e-54
 Identities = 111/182 (60%), Positives = 138/182 (75%)
 Frame = +1

Query: 121 MSSNTRVALVTGANKGIGFAIVRDLCRQFAGDVVLTARDVARGQAAVKQLQAEGLSPRFH 300
           MS  +RVALVTG NKGIGF I+RDLC++F+GDVVLTARD ARG AAV++LQAEGL+PRFH
Sbjct: 1   MSPCSRVALVTGGNKGIGFEIIRDLCQKFSGDVVLTARDEARGCAAVQKLQAEGLNPRFH 60

Query: 301 QLDIIDLQSIRALCDFLRKEYGGLDVLVDNAAIAFQLDNPTPFHVQAELTMKTNFMGNRN 480
           QLDI D QSI AL DFL KEY GLDVLV+NA IAF++D+PTPFH++ E+TMKTNF G R+
Sbjct: 61  QLDIDDPQSIHALRDFLLKEYKGLDVLVNNAGIAFKVDDPTPFHIKGEVTMKTNFFGTRD 120

Query: 481 VCTELLPLIKLQGKVVNVSNP*GVRTPLQVQP*ICTKIPKMKPPQRKTRGGLLNNFLEKT 660
           VC E+LPLIK QG+VVNVS+   +       P +  K  + +    +   GL+N ++E  
Sbjct: 121 VCKEMLPLIKPQGRVVNVSSMVSLSALKDCSPELQQKF-RSETITEEELVGLMNKYVEDA 179

Query: 661 KK 666
           KK
Sbjct: 180 KK 181


>ref|XP_989090.1| PREDICTED: similar to Carbonyl reductase [NADPH] 1 (NADPH-dependent
           carbonyl reductase 1) [Mus musculus]
          Length = 277

 Score =  210 bits (534), Expect = 3e-54
 Identities = 111/182 (60%), Positives = 138/182 (75%)
 Frame = +1

Query: 121 MSSNTRVALVTGANKGIGFAIVRDLCRQFAGDVVLTARDVARGQAAVKQLQAEGLSPRFH 300
           MS  +RVALVTG NKGIGF I+RDLC++F+GDVVLTARD ARG AAV++LQAEGL+PRFH
Sbjct: 1   MSPCSRVALVTGGNKGIGFEIIRDLCQKFSGDVVLTARDEARGCAAVQKLQAEGLNPRFH 60

Query: 301 QLDIIDLQSIRALCDFLRKEYGGLDVLVDNAAIAFQLDNPTPFHVQAELTMKTNFMGNRN 480
           QLDI D QSI AL DFL KEY GLDVLV+NA IAF++D+PTPFH++ E+TMKTNF G R+
Sbjct: 61  QLDIDDPQSIHALRDFLLKEYKGLDVLVNNAGIAFKVDDPTPFHIKGEVTMKTNFFGTRD 120

Query: 481 VCTELLPLIKLQGKVVNVSNP*GVRTPLQVQP*ICTKIPKMKPPQRKTRGGLLNNFLEKT 660
           VC E+LPLIK QG+VVNVS+   +       P +  K  + +    +   GL+N ++E  
Sbjct: 121 VCKEMLPLIKPQGRVVNVSSMVSLSALKDCSPELQQKF-RSETITEEELVGLMNKYVEDA 179

Query: 661 KK 666
           KK
Sbjct: 180 KK 181


>ref|XP_359206.3| PREDICTED: similar to Carbonyl reductase [NADPH] 1 (NADPH-dependent
           carbonyl reductase 1) [Mus musculus]
          Length = 277

 Score =  197 bits (500), Expect = 2e-50
 Identities = 111/189 (58%), Positives = 134/189 (70%)
 Frame = +1

Query: 121 MSSNTRVALVTGANKGIGFAIVRDLCRQFAGDVVLTARDVARGQAAVKQLQAEGLSPRFH 300
           M S +R+ALVTGANKGIGFAI RDLC+QF+GDVVLTARD ARG AAV++LQAEGL PRFH
Sbjct: 1   MPSCSRIALVTGANKGIGFAITRDLCQQFSGDVVLTARDEARGLAAVQKLQAEGLIPRFH 60

Query: 301 QLDIIDLQSIRALCDFLRKEYGGLDVLVDNAAIAFQLDNPTPFHVQAELTMKTNFMGNRN 480
           QLDI D QSI AL +FL KEYGGLDVLV+NA IA++  + T FH+  E  MKTNF G + 
Sbjct: 61  QLDINDPQSIHALRNFLLKEYGGLDVLVNNAGIAYKGTDLTHFHILREAAMKTNFFGTQA 120

Query: 481 VCTELLPLIKLQGKVVNVSNP*GVRTPLQVQP*ICTKIPKMKPPQRKTRGGLLNNFLEKT 660
           VCTELLPLIK QG+VVN+S+   +         +  K  + +    +   GL+N F+E T
Sbjct: 121 VCTELLPLIKTQGRVVNISSLISLEALKNCSLELQQKF-RSETITEEELVGLMNKFVEDT 179

Query: 661 KKRGAPKGG 687
           KK    K G
Sbjct: 180 KKGVHAKEG 188


>ref|NP_780581.1| retinol dehydrogenase 13 (all-trans and 9-cis) [Mus musculus]
          Length = 334

 Score = 60.1 bits (144), Expect = 4e-09
 Identities = 34/90 (37%), Positives = 55/90 (61%), Gaps = 2/90 (2%)
 Frame = +1

Query: 136 RVALVTGANKGIGFAIVRDLCRQFAGDVVLTARDVARGQAAVKQLQAEGLSPRFH--QLD 309
           +  +VTGAN GIG     +L ++  G+V+L  RD+ + + A K ++ E L+PR    +LD
Sbjct: 39  KTVIVTGANTGIGKQTALELAKR-GGNVILACRDMEKCEVAAKDIRGETLNPRVRAERLD 97

Query: 310 IIDLQSIRALCDFLRKEYGGLDVLVDNAAI 399
           +  L+SIR     + KE   +D+LV+NAA+
Sbjct: 98  LASLKSIREFARKVIKEEERVDILVNNAAV 127


>ref|NP_067532.2| short-chain dehydrogenase/reductase 1 [Mus musculus]
          Length = 316

 Score = 57.0 bits (136), Expect = 4e-08
 Identities = 51/143 (35%), Positives = 80/143 (55%), Gaps = 8/143 (5%)
 Frame = +1

Query: 136 RVALVTGANKGIGFAIVRDLCRQFAGDVVLTARDVARGQAAVKQLQA-EGLSPRF-HQLD 309
           +VA+VTGAN GIG    +DL ++ A  V L  RDV +G+ A +++QA  G S  F  +LD
Sbjct: 39  KVAIVTGANTGIGKETAKDLAQRGA-RVYLACRDVDKGELAAREIQAVTGNSQVFVRKLD 97

Query: 310 IIDLQSIRALC-DFLRKEYGGLDVLVDNAAIAFQLDNPTPFHVQA---ELTMKTNFMGNR 477
           + D +SIRA   DFL +E   L +L++NA +        P+   A   E+ +  N +G+ 
Sbjct: 98  LADTKSIRAFAKDFLAEE-KHLHLLINNAGVMM-----CPYSKTADGFEMHIGVNHLGHF 151

Query: 478 NVCTELLPLIK--LQGKVVNVSN 540
            +   LL  +K     ++VN+S+
Sbjct: 152 LLTHLLLEKLKESAPSRIVNLSS 174


>ref|NP_076186.1| alcohol dehydrogenase PAN2 [Mus musculus]
          Length = 334

 Score = 55.8 bits (133), Expect = 8e-08
 Identities = 37/100 (37%), Positives = 52/100 (52%), Gaps = 12/100 (12%)
 Frame = +1

Query: 136 RVALVTGANKGIGFAIVRDLCRQFAGDVVLTARDVARGQAAVKQL-----QAEGLSPR-- 294
           +  L+TGAN G+G A   +L R     V++  RD AR + A  QL     QA G  P   
Sbjct: 45  KTVLITGANSGLGRATAAELLR-LGARVIMGCRDRARAEEAAGQLRQELCQAGGAGPDGT 103

Query: 295 -----FHQLDIIDLQSIRALCDFLRKEYGGLDVLVDNAAI 399
                  +LD+  L+S+RA C  L +E   LDVL++NA +
Sbjct: 104 DGQLVVKELDLASLRSVRAFCQELLQEEPRLDVLINNAGV 143


>ref|NP_084293.1| retinol dehydrogenase 12 [Mus musculus]
          Length = 316

 Score = 54.3 bits (129), Expect = 2e-07
 Identities = 31/90 (34%), Positives = 54/90 (60%), Gaps = 2/90 (2%)
 Frame = +1

Query: 136 RVALVTGANKGIGFAIVRDLCRQFAGDVVLTARDVARGQAAVKQLQAEGLSPR--FHQLD 309
           +V ++TGAN GIG    R+L R+ A  V +  RDV +G++A  +++A+  + +    +LD
Sbjct: 40  KVVVITGANTGIGKETARELARRGA-RVYIACRDVLKGESAASEIRADTKNSQVLVRKLD 98

Query: 310 IIDLQSIRALCDFLRKEYGGLDVLVDNAAI 399
           + D +SIRA  +    E   L +L++NA +
Sbjct: 99  LSDTKSIRAFAERFLAEEKKLHILINNAGV 128


>ref|NP_001028498.1| dehydrogenase/reductase (SDR family) X chromosome [Mus musculus]
          Length = 335

 Score = 53.9 bits (128), Expect = 3e-07
 Identities = 44/130 (33%), Positives = 63/130 (48%), Gaps = 2/130 (1%)
 Frame = +1

Query: 136 RVALVTGANKGIGFAIVRDLCRQFAGDVVLTARDVARGQAAVKQLQAEGLSPRFH--QLD 309
           RVA+VTGA  GIG +  R L R     VV+   D  RGQ  V  ++AE  S R H   LD
Sbjct: 44  RVAIVTGATAGIGRSTARQLAR-LGMCVVVAGNDEHRGQEVVSSIRAEMGSDRAHFLPLD 102

Query: 310 IIDLQSIRALCDFLRKEYGGLDVLVDNAAIAFQLDNPTPFHVQAELTMKTNFMGNRNVCT 489
           +  L S+R      +     L +LV+NA +  +    T    +  L +  NF+G+  +  
Sbjct: 103 LASLASVRGFARDFQALGLPLHLLVNNAGVMLEPRAETEDGFERHLGV--NFLGHFLLTL 160

Query: 490 ELLPLIKLQG 519
            LLP ++  G
Sbjct: 161 LLLPALRASG 170


  Database: RefSeqMP
    Posted date:  Aug 2, 2006 12:58 AM
  Number of letters in database: 21,768,885
  Number of sequences in database:  45,328
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 50,796,012
Number of Sequences: 45328
Number of extensions: 1461324
Number of successful extensions: 7539
Number of sequences better than 1.0e-05: 10
Number of HSP's better than  0.0 without gapping: 5697
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7436
length of database: 21,768,885
effective HSP length: 105
effective length of database: 17,009,445
effective search space used: 4660587930
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)