BLASTX 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= 20060611S-058412 (1140 letters) Database: RefSeqSP 1040 sequences; 434,620 total letters Searching...done Score E Sequences producing significant alignments: (bits) Value Alignment gi|NP_999238.1| 20-beta-hydroxysteroid dehydrogenase [Sus scrofa] 278 1e-76 Alignment gi|NP_999184.1| carbonyl reductase/NADP-retinol dehydrogenase [... 46 2e-06 >ref|NP_999238.1| 20-beta-hydroxysteroid dehydrogenase [Sus scrofa] Length = 289 Score = 278 bits (712), Expect = 1e-76 Identities = 147/181 (81%), Positives = 157/181 (86%) Frame = +1 Query: 121 MSSNTRVALVTGANKGIGFAIVRDLCRQFAGDVVLTARDVARGQAAVKQLQAEGLSPRFH 300 MSSNTRVALVTGANKGIGFAIVRDLCRQFAGDVVLTARDVARGQAAVKQLQAEGLSPRFH Sbjct: 1 MSSNTRVALVTGANKGIGFAIVRDLCRQFAGDVVLTARDVARGQAAVKQLQAEGLSPRFH 60 Query: 301 QLDIIDLQSIRALCDFLRKEYGGLDVLVDNAAIAFQLDNPTPFHVQAELTMKTNFMGNRN 480 QLDIIDLQSIRALCDFLRKEYGGLDVLV+NAAIAFQLDNPTPFH+QAELTMKTNFMG RN Sbjct: 61 QLDIIDLQSIRALCDFLRKEYGGLDVLVNNAAIAFQLDNPTPFHIQAELTMKTNFMGTRN 120 Query: 481 VCTELLPLIKLQGKVVNVSNP*GVRTPLQVQP*ICTKIPKMKPPQRKTRGGLLNNFLEKT 660 VCTELLPLIK QG+VVNVS+ GVR + P + K K + + GL+N F+E T Sbjct: 121 VCTELLPLIKPQGRVVNVSSTEGVRALNECSPELQQKF-KSETITEEELVGLMNKFVEDT 179 Query: 661 K 663 K Sbjct: 180 K 180 >ref|NP_999184.1| carbonyl reductase/NADP-retinol dehydrogenase [Sus scrofa] Length = 260 Score = 45.8 bits (107), Expect = 2e-06 Identities = 32/88 (36%), Positives = 43/88 (48%) Frame = +1 Query: 136 RVALVTGANKGIGFAIVRDLCRQFAGDVVLTARDVARGQAAVKQLQAEGLSPRFHQLDII 315 +VALVT + GIG AI R L Q VV+++R V LQ EGLS + Sbjct: 15 KVALVTASTDGIGLAIARRLA-QDGAHVVVSSRKQENVDRTVATLQGEGLSVTGTVCHVG 73 Query: 316 DLQSIRALCDFLRKEYGGLDVLVDNAAI 399 + L +GG+D+LV NAA+ Sbjct: 74 KAEDRERLVAMAVNLHGGVDILVSNAAV 101 Database: RefSeqSP Posted date: Aug 1, 2006 7:14 PM Number of letters in database: 434,620 Number of sequences in database: 1040 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 1,004,001 Number of Sequences: 1040 Number of extensions: 27774 Number of successful extensions: 126 Number of sequences better than 1.0e-05: 2 Number of HSP's better than 0.0 without gapping: 110 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 122 length of database: 434,620 effective HSP length: 78 effective length of database: 353,500 effective search space used: 106403500 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
Search to RefSeqBP
BLASTX 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= 20060611S-058412 (1140 letters) Database: RefSeqBP 33,508 sequences; 16,112,626 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Alignment gi|NP_001030258.1| 20-beta-hydroxysteroid dehydrogenase-like [B... 234 1e-61 Alignment gi|XP_869745.1| PREDICTED: similar to carbonyl reductase 3 isof... 224 1e-58 Alignment gi|NP_001029685.1| carbonyl reductase 1 [Bos taurus] 222 5e-58 Alignment gi|XP_874747.1| PREDICTED: similar to Carbonyl reductase [NADPH... 215 6e-56 Alignment gi|XP_868956.1| PREDICTED: similar to Carbonyl reductase [NADPH... 74 2e-13 Alignment gi|XP_584642.2| PREDICTED: similar to retinol dehydrogenase 11 ... 61 2e-09 Alignment gi|NP_899207.1| double substrate-specificity short chain dehydr... 57 3e-08 Alignment gi|XP_592820.2| PREDICTED: similar to retinol dehydrogenase 11 ... 56 5e-08 Alignment gi|XP_584629.2| PREDICTED: similar to Retinol dehydrogenase 13,... 55 1e-07 Alignment gi|NP_777126.1| short-chain dehydrogenase/reductase [Bos taurus] 54 2e-07 >ref|NP_001030258.1| 20-beta-hydroxysteroid dehydrogenase-like [Bos taurus] Length = 286 Score = 234 bits (596), Expect = 1e-61 Identities = 123/181 (67%), Positives = 147/181 (81%) Frame = +1 Query: 121 MSSNTRVALVTGANKGIGFAIVRDLCRQFAGDVVLTARDVARGQAAVKQLQAEGLSPRFH 300 MSS+TRVALVTGANKG+GFAIVRDLCR+F GDVVLTARD ARG+AAV+QLQAEGLSPRFH Sbjct: 1 MSSSTRVALVTGANKGLGFAIVRDLCRRFPGDVVLTARDEARGRAAVQQLQAEGLSPRFH 60 Query: 301 QLDIIDLQSIRALCDFLRKEYGGLDVLVDNAAIAFQLDNPTPFHVQAELTMKTNFMGNRN 480 QLDI DLQSI AL DFLRKEYGGLDVLV+NAAIAFQL +PTP ++AE+TMKTNF G R+ Sbjct: 61 QLDITDLQSIHALRDFLRKEYGGLDVLVNNAAIAFQLSDPTPTPIKAEMTMKTNFFGTRD 120 Query: 481 VCTELLPLIKLQGKVVNVSNP*GVRTPLQVQP*ICTKIPKMKPPQRKTRGGLLNNFLEKT 660 +CTELLPL+K QG+VVN+S+ G + P + K+ + + + GL+N F+E T Sbjct: 121 ICTELLPLMKPQGRVVNMSSGWGFKALESCSPELQQKL-RSETITEEELVGLMNKFVEDT 179 Query: 661 K 663 K Sbjct: 180 K 180 >ref|XP_869745.1| PREDICTED: similar to carbonyl reductase 3 isoform 2 [Bos taurus] Length = 277 Score = 224 bits (571), Expect = 1e-58 Identities = 113/143 (79%), Positives = 127/143 (88%) Frame = +1 Query: 121 MSSNTRVALVTGANKGIGFAIVRDLCRQFAGDVVLTARDVARGQAAVKQLQAEGLSPRFH 300 MSS TRVALVTGANKGIGFAI RDLCR+F GDVVLTARD ARG+AAV+QLQAEGLSPRFH Sbjct: 1 MSSYTRVALVTGANKGIGFAIARDLCREFPGDVVLTARDKARGRAAVQQLQAEGLSPRFH 60 Query: 301 QLDIIDLQSIRALCDFLRKEYGGLDVLVDNAAIAFQLDNPTPFHVQAELTMKTNFMGNRN 480 QLDI DLQSIRAL DFLRKEYGGL+VLV+NA IAF+ D+PTPF +QAE+T+KTNF RN Sbjct: 61 QLDIDDLQSIRALRDFLRKEYGGLNVLVNNAGIAFKTDDPTPFDIQAEMTLKTNFFATRN 120 Query: 481 VCTELLPLIKLQGKVVNVSNP*G 549 VCTELLP++K G+VVNVS+ G Sbjct: 121 VCTELLPIVKPHGRVVNVSSSQG 143 >ref|NP_001029685.1| carbonyl reductase 1 [Bos taurus] Length = 277 Score = 222 bits (565), Expect = 5e-58 Identities = 121/181 (66%), Positives = 142/181 (78%) Frame = +1 Query: 121 MSSNTRVALVTGANKGIGFAIVRDLCRQFAGDVVLTARDVARGQAAVKQLQAEGLSPRFH 300 MSS+ VALVTGANKGIGF IVRDLCR+F+GDVVLTARD ARG+AAV+QLQAEGLSP FH Sbjct: 1 MSSSNCVALVTGANKGIGFVIVRDLCRRFSGDVVLTARDEARGRAAVQQLQAEGLSPLFH 60 Query: 301 QLDIIDLQSIRALCDFLRKEYGGLDVLVDNAAIAFQLDNPTPFHVQAELTMKTNFMGNRN 480 QLDI D QSIRAL DFLRKEYGGLDVLV+NA IAF+ + TPFH+QAE+TMKTNF G R+ Sbjct: 61 QLDIDDRQSIRALRDFLRKEYGGLDVLVNNAGIAFKTADTTPFHIQAEVTMKTNFFGTRD 120 Query: 481 VCTELLPLIKLQGKVVNVSNP*GVRTPLQVQP*ICTKIPKMKPPQRKTRGGLLNNFLEKT 660 VCTELLPLIK QG+VVNVS+ V + + + K + + + GL+N F+E T Sbjct: 121 VCTELLPLIKPQGRVVNVSSFVSVNSLKKCSRELQQKF-RSETITEEELVGLMNKFVEDT 179 Query: 661 K 663 K Sbjct: 180 K 180 >ref|XP_874747.1| PREDICTED: similar to Carbonyl reductase [NADPH] 1 (NADPH-dependent carbonyl reductase 1) (Prostaglandin-E(2) 9-reductase) (Prostaglandin 9-ketoreductase) (15-hydroxyprostaglandin dehydrogenase [NADP+]) [Bos taurus] Length = 277 Score = 215 bits (547), Expect = 6e-56 Identities = 118/181 (65%), Positives = 140/181 (77%) Frame = +1 Query: 121 MSSNTRVALVTGANKGIGFAIVRDLCRQFAGDVVLTARDVARGQAAVKQLQAEGLSPRFH 300 MSS+TRVALVTGANKG+GFAIVR L F GDVVLTA D A+G+AAV+QLQA+GLSP FH Sbjct: 1 MSSSTRVALVTGANKGLGFAIVRALAGGFQGDVVLTAPDEAQGRAAVQQLQAQGLSPLFH 60 Query: 301 QLDIIDLQSIRALCDFLRKEYGGLDVLVDNAAIAFQLDNPTPFHVQAELTMKTNFMGNRN 480 QLDI D QSIRAL DFLRKEYGGLDVLV+NA IAF+ + TPFH+QAE+TMKTNF G R+ Sbjct: 61 QLDIDDRQSIRALRDFLRKEYGGLDVLVNNAGIAFKTADTTPFHIQAEVTMKTNFFGTRD 120 Query: 481 VCTELLPLIKLQGKVVNVSNP*GVRTPLQVQP*ICTKIPKMKPPQRKTRGGLLNNFLEKT 660 VCTELLPLIK QG+VVNVS+ V + + P + K + + + GL+N F+E T Sbjct: 121 VCTELLPLIKPQGRVVNVSSSVSVSSLKKCSPELQQKF-QSETITEEELVGLMNKFVEDT 179 Query: 661 K 663 K Sbjct: 180 K 180 >ref|XP_868956.1| PREDICTED: similar to Carbonyl reductase [NADPH] 1 (NADPH-dependent carbonyl reductase 1) (Prostaglandin-E(2) 9-reductase) (Prostaglandin 9-ketoreductase) (15-hydroxyprostaglandin dehydrogenase [NADP+]) [Bos taurus] Length = 327 Score = 74.3 bits (181), Expect = 2e-13 Identities = 61/175 (34%), Positives = 84/175 (48%) Frame = +1 Query: 139 VALVTGANKGIGFAIVRDLCRQFAGDVVLTARDVARGQAAVKQLQAEGLSPRFHQLDIID 318 +ALVTGANKGIG A++ G R +AA + FH+ + Sbjct: 1 MALVTGANKGIGLAVL------LLGGAGTGDRGCIHIRAAPRGSARRPPPLSFHEWRPLG 54 Query: 319 LQSIRALCDFLRKEYGGLDVLVDNAAIAFQLDNPTPFHVQAELTMKTNFMGNRNVCTELL 498 G+ +AA + TPF +QAE+TMKTNF G R VCTELL Sbjct: 55 -----------GSPAAGISTHWISAA------DTTPFPIQAEVTMKTNFFGTRVVCTELL 97 Query: 499 PLIKLQGKVVNVSNP*GVRTPLQVQP*ICTKIPKMKPPQRKTRGGLLNNFLEKTK 663 PL+K QG+VVNVS+ V + + P + K + + + GL+N F+E TK Sbjct: 98 PLLKPQGRVVNVSSSVSVTSLKKCSPELQQKF-QSETITEEELVGLMNKFVEDTK 151 >ref|XP_584642.2| PREDICTED: similar to retinol dehydrogenase 11 (predicted) [Bos taurus] Length = 330 Score = 60.8 bits (146), Expect = 2e-09 Identities = 48/139 (34%), Positives = 76/139 (54%), Gaps = 4/139 (2%) Frame = +1 Query: 136 RVALVTGANKGIGFAIVRDLCRQFAGDVVLTARDVARGQAAVKQLQAEGLSPR--FHQLD 309 + A+VTGAN GIG A+ ++L + A V+L R RGQ A+ ++QA S R ++D Sbjct: 50 KTAVVTGANSGIGKAVSQELAHRGA-RVILACRSRERGQQALAEIQATSKSNRLLLGEVD 108 Query: 310 IIDLQSIRALCDFLRKEYGGLDVLVDNAAIAFQLDNPTPFHVQAELTMKTNFMGNRNVCT 489 + + SIR+ L +E + +LV+NAA+ TP + +LT TN+ G + Sbjct: 109 LSSMASIRSFAQRLLQECPEIHLLVNNAAVCGFPTTLTPEGL--DLTFATNYTGPFLLTN 166 Query: 490 ELLPLIKLQG--KVVNVSN 540 L ++ G +VVNVS+ Sbjct: 167 LLQGALQRAGSARVVNVSS 185 >ref|NP_899207.1| double substrate-specificity short chain dehydrogenase/reductase 2 [Bos taurus] Length = 316 Score = 57.0 bits (136), Expect = 3e-08 Identities = 43/139 (30%), Positives = 75/139 (53%), Gaps = 4/139 (2%) Frame = +1 Query: 136 RVALVTGANKGIGFAIVRDLCRQFAGDVVLTARDVARGQAAVKQLQAEGLSPR--FHQLD 309 +V ++TGAN GIG R+L R+ A V + RDV +G++A ++QA+ + + +LD Sbjct: 40 KVVVITGANTGIGKETARELARRGA-RVYIACRDVLKGESAASEIQADTKNSQVLVRKLD 98 Query: 310 IIDLQSIRALCDFLRKEYGGLDVLVDNAAIAFQLDNPTPFHVQAELTMKTNFMGNRNVCT 489 + D +SIRA + E L +L++NA + + T + L + N +G+ + Sbjct: 99 LSDTKSIRAFAEGFLAEEKQLHILINNAGVMLCPYSKTADGFETHLAV--NHLGHFLLTH 156 Query: 490 ELLPLIK--LQGKVVNVSN 540 LL +K +VVN+S+ Sbjct: 157 LLLGRLKESAPARVVNLSS 175 >ref|XP_592820.2| PREDICTED: similar to retinol dehydrogenase 11 (predicted) [Bos taurus] Length = 377 Score = 56.2 bits (134), Expect = 5e-08 Identities = 49/139 (35%), Positives = 68/139 (48%), Gaps = 4/139 (2%) Frame = +1 Query: 136 RVALVTGANKGIGFAIVRDLCRQFAGDVVLTARDVARGQAAVKQLQAEGLSPR--FHQLD 309 R A+VTGAN GIG +L R+ A VVL R RG+AA L+ E + F LD Sbjct: 37 RTAVVTGANSGIGKMTALELARRGAR-VVLACRSRERGEAAAFDLRQESGNNEVIFMALD 95 Query: 310 IIDLQSIRALCDFLRKEYGGLDVLVDNAAIAFQLDNPTPFHVQAELTMKTNFMGNRNVCT 489 + L S+RA LD+L+ NA I+ PF+ L ++ N +G + Sbjct: 96 LASLASVRAFATAFLSSEPRLDILIHNAGISSCGRTREPFN----LLLRVNHIGPFLLTH 151 Query: 490 ELLPLIKLQ--GKVVNVSN 540 LLP +K +VV VS+ Sbjct: 152 LLLPRLKTSAPSRVVVVSS 170 >ref|XP_584629.2| PREDICTED: similar to Retinol dehydrogenase 13, partial [Bos taurus] Length = 148 Score = 54.7 bits (130), Expect = 1e-07 Identities = 30/90 (33%), Positives = 55/90 (61%), Gaps = 2/90 (2%) Frame = +1 Query: 136 RVALVTGANKGIGFAIVRDLCRQFAGDVVLTARDVARGQAAVKQLQAEGLSPRFH--QLD 309 + +VTGAN GIG +L ++ G+++L RD+ + +AA K+++ E L+ R + LD Sbjct: 39 KTVIVTGANTGIGKQTALELAKR-GGNIILACRDMEKCEAAAKEIRGETLNHRVNARHLD 97 Query: 310 IIDLQSIRALCDFLRKEYGGLDVLVDNAAI 399 + L+SIR + +E + +L++NAA+ Sbjct: 98 LASLKSIREFAAKVTEEEEHVHILINNAAV 127 >ref|NP_777126.1| short-chain dehydrogenase/reductase [Bos taurus] Length = 270 Score = 53.9 bits (128), Expect = 2e-07 Identities = 46/154 (29%), Positives = 70/154 (45%), Gaps = 2/154 (1%) Frame = +1 Query: 136 RVALVTGANKGIGFAIVRDLCRQFAGDVVLTARDVARGQAAVKQLQAEGLSPRFHQLDII 315 +V +VTG +GIG IVR A VV+ +D ARG+A ++L F D+ Sbjct: 10 KVVIVTGGGRGIGAGIVRAFVESGA-QVVICDKDEARGRAVERELP----GTVFLLCDVT 64 Query: 316 DLQSIRALCDFLRKEYGGLDVLVDNAAIAFQLDNPTPFHVQA-ELTMKTNFMGNRNVCTE 492 + +R L + +G LD +V+NA P Q ++ N +G + Sbjct: 65 REEDVRTLVSETIRRFGRLDCIVNNAGYHPPPQWPEETSAQGFRQLLELNLLGTYTLTKL 124 Query: 493 LLP-LIKLQGKVVNVSNP*GVRTPLQVQP*ICTK 591 LP L K +G V+N+S+ G Q P + TK Sbjct: 125 ALPHLRKSRGNVINISSLVGAIGQSQAVPYVATK 158 Database: RefSeqBP Posted date: Aug 1, 2006 7:14 PM Number of letters in database: 16,112,626 Number of sequences in database: 33,508 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 38,086,471 Number of Sequences: 33508 Number of extensions: 1109701 Number of successful extensions: 5668 Number of sequences better than 1.0e-05: 10 Number of HSP's better than 0.0 without gapping: 4432 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5597 length of database: 16,112,626 effective HSP length: 103 effective length of database: 12,661,302 effective search space used: 3494519352 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
Search to RefSeqCP
BLASTX 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= 20060611S-058412 (1140 letters) Database: RefSeqCP 33,732 sequences; 19,266,565 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Alignment gi|XP_852675.1| PREDICTED: similar to Carbonyl reductase [NADPH... 236 4e-62 Alignment gi|XP_544873.2| PREDICTED: similar to carbonyl reductase 3 [Can... 223 9e-59 Alignment gi|XP_537903.1| PREDICTED: similar to Carbonyl reductase [NADPH... 209 4e-54 Alignment gi|XP_535589.2| PREDICTED: similar to Carbonyl reductase [NADPH... 207 2e-53 Alignment gi|XP_533000.2| PREDICTED: similar to Retinol dehydrogenase 12 ... 68 2e-11 Alignment gi|XP_547738.2| PREDICTED: similar to dehydrogenase/reductase (... 57 4e-08 Alignment gi|XP_548293.2| PREDICTED: similar to retinol dehydrogenase 11 ... 56 7e-08 Alignment gi|XP_854127.1| PREDICTED: similar to Retinol dehydrogenase 13 ... 55 1e-07 Alignment gi|XP_547866.2| PREDICTED: similar to retinol dehydrogenase 12 ... 55 1e-07 Alignment gi|XP_540096.2| PREDICTED: similar to retinol dehydrogenase 14 ... 52 8e-07 >ref|XP_852675.1| PREDICTED: similar to Carbonyl reductase [NADPH] 1 (NADPH-dependent carbonyl reductase 1) (Prostaglandin-E(2) 9-reductase) (Prostaglandin 9-ketoreductase) (15-hydroxyprostaglandin dehydrogenase [NADP+]) [Canis familiaris] Length = 277 Score = 236 bits (601), Expect = 4e-62 Identities = 125/182 (68%), Positives = 147/182 (80%) Frame = +1 Query: 121 MSSNTRVALVTGANKGIGFAIVRDLCRQFAGDVVLTARDVARGQAAVKQLQAEGLSPRFH 300 MS+ +RVALVTGANKGIGFAI R+LCRQF+GDVVLTARD ARG+AAV+QLQAEGLSPRFH Sbjct: 1 MSAASRVALVTGANKGIGFAIARELCRQFSGDVVLTARDEARGRAAVQQLQAEGLSPRFH 60 Query: 301 QLDIIDLQSIRALCDFLRKEYGGLDVLVDNAAIAFQLDNPTPFHVQAELTMKTNFMGNRN 480 LDI DLQSIRAL DFLRKEYGGLDVLV+NA IAF+ ++PTPFH+QAE+TMKTNF G R+ Sbjct: 61 LLDIDDLQSIRALRDFLRKEYGGLDVLVNNAGIAFKTNDPTPFHIQAEVTMKTNFFGTRD 120 Query: 481 VCTELLPLIKLQGKVVNVSNP*GVRTPLQVQP*ICTKIPKMKPPQRKTRGGLLNNFLEKT 660 VCTELLPL+K QG+VVNVS+ VR P + K + + + GL+N F+E T Sbjct: 121 VCTELLPLMKPQGRVVNVSSVVSVRALKSCSPELQQKF-RSEAITEEELVGLMNKFVEDT 179 Query: 661 KK 666 KK Sbjct: 180 KK 181 >ref|XP_544873.2| PREDICTED: similar to carbonyl reductase 3 [Canis familiaris] Length = 484 Score = 223 bits (567), Expect(2) = 9e-59 Identities = 113/151 (74%), Positives = 130/151 (86%) Frame = +1 Query: 88 SPRQSTYTTPAMSSNTRVALVTGANKGIGFAIVRDLCRQFAGDVVLTARDVARGQAAVKQ 267 SPR PAMSS +RVALVTGAN+GIGFAI R+LCRQF+GDVVLTARD ARG+AAV+Q Sbjct: 197 SPRAPGPPLPAMSSCSRVALVTGANRGIGFAIARELCRQFSGDVVLTARDEARGRAAVQQ 256 Query: 268 LQAEGLSPRFHQLDIIDLQSIRALCDFLRKEYGGLDVLVDNAAIAFQLDNPTPFHVQAEL 447 LQAEGLSPRFH LDI DLQSIRAL DFLRKEYGGL+VLV+NA IAF+ D+PTPF +QAE+ Sbjct: 257 LQAEGLSPRFHLLDIDDLQSIRALRDFLRKEYGGLNVLVNNAGIAFKPDDPTPFDIQAEI 316 Query: 448 TMKTNFMGNRNVCTELLPLIKLQGKVVNVSN 540 T+KTNF RNVC ELLP+IK G+VVN+S+ Sbjct: 317 TLKTNFFATRNVCNELLPIIKPHGRVVNISS 347 Score = 23.9 bits (50), Expect(2) = 9e-59 Identities = 11/27 (40%), Positives = 17/27 (62%) Frame = +2 Query: 539 TLKGSEPLYKCSPEFAQKFQK*NLPKE 619 +L+GS+ L CS + +KFQ L +E Sbjct: 347 SLEGSKALENCSADLQKKFQCETLTEE 373 >ref|XP_537903.1| PREDICTED: similar to Carbonyl reductase [NADPH] 1 (NADPH-dependent carbonyl reductase 1) (Prostaglandin-E(2) 9-reductase) (Prostaglandin 9-ketoreductase) (15-hydroxyprostaglandin dehydrogenase [NADP+]) [Canis familiaris] Length = 296 Score = 209 bits (532), Expect = 4e-54 Identities = 113/189 (59%), Positives = 136/189 (71%) Frame = +1 Query: 121 MSSNTRVALVTGANKGIGFAIVRDLCRQFAGDVVLTARDVARGQAAVKQLQAEGLSPRFH 300 MS RVA+VTGANKG+GFAI RDLCR F GDV+LT+RD ARG+AAV+ L+AEGLSPRFH Sbjct: 1 MSLALRVAVVTGANKGLGFAITRDLCRNFPGDVILTSRDEARGRAAVQHLKAEGLSPRFH 60 Query: 301 QLDIIDLQSIRALCDFLRKEYGGLDVLVDNAAIAFQLDNPTPFHVQAELTMKTNFMGNRN 480 LDI +LQSIRAL DFL +EYGGLDVLV+NA I F D+PTP H+QAE+T+KTNF G R+ Sbjct: 61 LLDIDNLQSIRALRDFLWEEYGGLDVLVNNAGIVFTPDDPTPLHIQAEVTLKTNFFGTRD 120 Query: 481 VCTELLPLIKLQGKVVNVSNP*GVRTPLQVQP*ICTKIPKMKPPQRKTRGGLLNNFLEKT 660 +CTELLPL+K QG+VVNVS+ Q P + K + + G L+N FLE Sbjct: 121 ICTELLPLVKPQGRVVNVSSIMSFLALKQCSPELQQKFTSETITEEEL-GMLMNKFLEDV 179 Query: 661 KKRGAPKGG 687 K K G Sbjct: 180 KNGVHKKEG 188 >ref|XP_535589.2| PREDICTED: similar to Carbonyl reductase [NADPH] 1 (NADPH-dependent carbonyl reductase 1) (Prostaglandin-E(2) 9-reductase) (Prostaglandin 9-ketoreductase) (15-hydroxyprostaglandin dehydrogenase [NADP+]) [Canis familiaris] Length = 292 Score = 207 bits (526), Expect = 2e-53 Identities = 115/189 (60%), Positives = 136/189 (71%) Frame = +1 Query: 121 MSSNTRVALVTGANKGIGFAIVRDLCRQFAGDVVLTARDVARGQAAVKQLQAEGLSPRFH 300 MSS RVA+VTGANKG+GFAI+RDLCR F+GDVVLTARD ARG+AAV+QLQ++GLSPRFH Sbjct: 1 MSSAPRVAVVTGANKGLGFAIMRDLCRNFSGDVVLTARDEARGRAAVQQLQSKGLSPRFH 60 Query: 301 QLDIIDLQSIRALCDFLRKEYGGLDVLVDNAAIAFQLDNPTPFHVQAELTMKTNFMGNRN 480 LDI DLQSI L DFL KEY GLDVLV+NA I F +PTP +QAE+T+KTNF G RN Sbjct: 61 LLDIDDLQSICTLRDFLCKEYRGLDVLVNNAGINFDTGDPTPLPIQAEVTLKTNFFGTRN 120 Query: 481 VCTELLPLIKLQGKVVNVSNP*GVRTPLQVQP*ICTKIPKMKPPQRKTRGGLLNNFLEKT 660 VC ELLPL+K QG+VVNVS+ G T Q P + K + + G L+N F+E Sbjct: 121 VCRELLPLMKPQGRVVNVSSVMGFVTLKQCSPELQQKFTSEAITEEEL-GMLMNKFVEDV 179 Query: 661 KKRGAPKGG 687 K K G Sbjct: 180 KNGVHKKEG 188 >ref|XP_533000.2| PREDICTED: similar to Retinol dehydrogenase 12 [Canis familiaris] Length = 596 Score = 67.8 bits (164), Expect = 2e-11 Identities = 50/139 (35%), Positives = 82/139 (58%), Gaps = 4/139 (2%) Frame = +1 Query: 136 RVALVTGANKGIGFAIVRDLCRQFAGDVVLTARDVARGQAAVKQLQ--AEGLSPRFHQLD 309 + A+VTGAN GIG A+ ++L R+ A V+L R+ RGQ A+ ++Q ++G Q+D Sbjct: 316 KTAVVTGANSGIGKAVCQELARRGAR-VILACRNWERGQKALAEIQVASKGTCLLLGQVD 374 Query: 310 IIDLQSIRALCDFLRKEYGGLDVLVDNAAIAFQLDNPTPFHVQAELTMKTNFMGNRNVCT 489 + + SIR+ +L +EY + +LV+NAAI+ TP + +LT TN++G + Sbjct: 375 LSSMASIRSFARWLLQEYPEIHLLVNNAAISGFPKTLTPEGL--DLTFATNYVGPFLLTN 432 Query: 490 ELLPLIKLQG--KVVNVSN 540 L ++ G +VVNVS+ Sbjct: 433 LLQGALQRAGSARVVNVSS 451 >ref|XP_547738.2| PREDICTED: similar to dehydrogenase/reductase (SDR family) member 2 isoform 2 [Canis familiaris] Length = 370 Score = 56.6 bits (135), Expect = 4e-08 Identities = 39/88 (44%), Positives = 48/88 (54%) Frame = +1 Query: 136 RVALVTGANKGIGFAIVRDLCRQFAGDVVLTARDVARGQAAVKQLQAEGLSPRFHQLDII 315 RVA+VTGA GIGFAI R L R A VV+++R AV LQ EGLS + Sbjct: 126 RVAVVTGATDGIGFAIARRLARDGA-HVVVSSRKQHNVDRAVAALQGEGLSVTGTVCHVG 184 Query: 316 DLQSIRALCDFLRKEYGGLDVLVDNAAI 399 + L + + YGGLD LV NAA+ Sbjct: 185 KAEDRERLVATVLEHYGGLDFLVCNAAV 212 >ref|XP_548293.2| PREDICTED: similar to retinol dehydrogenase 11 (predicted) [Canis familiaris] Length = 377 Score = 55.8 bits (133), Expect = 7e-08 Identities = 49/139 (35%), Positives = 68/139 (48%), Gaps = 4/139 (2%) Frame = +1 Query: 136 RVALVTGANKGIGFAIVRDLCRQFAGDVVLTARDVARGQAAVKQLQAEGLSPR--FHQLD 309 R A+VTGAN GIG +L R+ A VVL R RG+AA L+ E + F LD Sbjct: 37 RTAVVTGANSGIGKMTALELARRGAR-VVLACRSRERGEAAAFDLRQESGNNEVIFMALD 95 Query: 310 IIDLQSIRALCDFLRKEYGGLDVLVDNAAIAFQLDNPTPFHVQAELTMKTNFMGNRNVCT 489 + L S+RA LD+L+ NA I+ PF+ L ++ N +G + Sbjct: 96 LASLASVRAFATAFLSSEPRLDILIHNAGISSCGRTHKPFN----LLLRVNHIGPFLLTH 151 Query: 490 ELLPLIK--LQGKVVNVSN 540 LLP +K +VV VS+ Sbjct: 152 LLLPRLKTCAPSRVVVVSS 170 >ref|XP_854127.1| PREDICTED: similar to Retinol dehydrogenase 13 [Canis familiaris] Length = 334 Score = 55.1 bits (131), Expect = 1e-07 Identities = 32/90 (35%), Positives = 54/90 (60%), Gaps = 2/90 (2%) Frame = +1 Query: 136 RVALVTGANKGIGFAIVRDLCRQFAGDVVLTARDVARGQAAVKQLQAEGLSPRFH--QLD 309 + +VTGAN GIG +L R+ G+++L RD+ + +AA K+++ E L+ R LD Sbjct: 39 KTVIVTGANTGIGKQTALELARR-GGNIILACRDMEKCEAAAKEIRGETLNHRVSAWHLD 97 Query: 310 IIDLQSIRALCDFLRKEYGGLDVLVDNAAI 399 + L+SIR + +E + +LV+NAA+ Sbjct: 98 LASLKSIREFAAKIIEEEEQVHILVNNAAV 127 >ref|XP_547866.2| PREDICTED: similar to retinol dehydrogenase 12 (all-trans and 9-cis) [Canis familiaris] Length = 303 Score = 55.1 bits (131), Expect = 1e-07 Identities = 43/142 (30%), Positives = 75/142 (52%), Gaps = 7/142 (4%) Frame = +1 Query: 136 RVALVTGANKGIGFAIVRDLCRQFAGDVVLTARDVARGQAAVKQLQAEGLSPR--FHQLD 309 +V ++TGAN GIG R+L R+ A V + RDV +G++A +++A+ + + +LD Sbjct: 27 KVVVITGANTGIGKETARELARRGA-RVYIACRDVLKGESAASEIRADTKNSQVLVRKLD 85 Query: 310 IIDLQSIRALCDFLRKEYGGLDVLVDNAAIAFQLDNPTPFHVQA---ELTMKTNFMGNRN 480 + D +SIRA + E L +L++NA + P+ A E + N +G+ Sbjct: 86 LSDTKSIRAFAEGFLAEEKQLHILINNAGVMM-----CPYSKTADGFETHLGVNHLGHFL 140 Query: 481 VCTELLPLIK--LQGKVVNVSN 540 + LL +K +VVN+S+ Sbjct: 141 LTHLLLERLKESTPARVVNLSS 162 >ref|XP_540096.2| PREDICTED: similar to retinol dehydrogenase 14 (all-trans and 9-cis) isoform 1 [Canis familiaris] Length = 336 Score = 52.4 bits (124), Expect = 8e-07 Identities = 37/103 (35%), Positives = 51/103 (49%), Gaps = 15/103 (14%) Frame = +1 Query: 136 RVALVTGANKGIGFAIVRDLCRQFAGDVVLTARDVARGQAAVKQL-----QAEGLSPR-- 294 + L+TGAN G+G A L R V++ RD AR + A QL QA G P Sbjct: 44 KTVLITGANSGLGRATAAALLR-LGARVIMGCRDRARAEEAAGQLRRELRQAGGREPGSD 102 Query: 295 --------FHQLDIIDLQSIRALCDFLRKEYGGLDVLVDNAAI 399 +LD+ L+S+RA C + +E LDVL++NA I Sbjct: 103 VGAAGELVVRELDLASLRSVRAFCQEVLQEEPRLDVLINNAGI 145 Database: RefSeqCP Posted date: Aug 1, 2006 9:25 PM Number of letters in database: 19,266,565 Number of sequences in database: 33,732 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 44,717,371 Number of Sequences: 33732 Number of extensions: 1303205 Number of successful extensions: 6617 Number of sequences better than 1.0e-05: 10 Number of HSP's better than 0.0 without gapping: 5167 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 6544 length of database: 19,266,565 effective HSP length: 105 effective length of database: 15,724,705 effective search space used: 4308569170 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
Search to RefSeqHP
BLASTX 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= 20060611S-058412 (1140 letters) Database: RefSeqHP 39,411 sequences; 17,774,539 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Alignment gi|NP_001748.1| carbonyl reductase 1 [Homo sapiens] 237 1e-62 Alignment gi|NP_001227.1| carbonyl reductase 3 [Homo sapiens] 215 5e-56 Alignment gi|XP_371503.3| PREDICTED: similar to short-chain dehydrogenase... 56 6e-08 Alignment gi|XP_947127.1| PREDICTED: similar to short-chain dehydrogenase... 56 6e-08 Alignment gi|XP_950347.1| PREDICTED: similar to dehydrogenase/reductase (... 55 1e-07 Alignment gi|NP_689656.1| retinol dehydrogenase 12 (all-trans and 9-cis) ... 54 3e-07 Alignment gi|NP_065956.1| retinol dehydrogenase 14 (all-trans and 9-cis) ... 53 4e-07 Alignment gi|NP_057110.2| androgen-regulated short-chain dehydrogenase/re... 52 9e-07 Alignment gi|NP_932349.1| dehydrogenase/reductase (SDR family) member 4 l... 52 9e-07 Alignment gi|XP_950350.1| PREDICTED: similar to dehydrogenase/reductase (... 52 9e-07 >ref|NP_001748.1| carbonyl reductase 1 [Homo sapiens] Length = 277 Score = 237 bits (605), Expect = 1e-62 Identities = 129/189 (68%), Positives = 146/189 (77%) Frame = +1 Query: 121 MSSNTRVALVTGANKGIGFAIVRDLCRQFAGDVVLTARDVARGQAAVKQLQAEGLSPRFH 300 MSS VALVTG NKGIG AIVRDLCR F+GDVVLTARDV RGQAAV+QLQAEGLSPRFH Sbjct: 1 MSSGIHVALVTGGNKGIGLAIVRDLCRLFSGDVVLTARDVTRGQAAVQQLQAEGLSPRFH 60 Query: 301 QLDIIDLQSIRALCDFLRKEYGGLDVLVDNAAIAFQLDNPTPFHVQAELTMKTNFMGNRN 480 QLDI DLQSIRAL DFLRKEYGGLDVLV+NA IAF++ +PTPFH+QAE+TMKTNF G R+ Sbjct: 61 QLDIDDLQSIRALRDFLRKEYGGLDVLVNNAGIAFKVADPTPFHIQAEVTMKTNFFGTRD 120 Query: 481 VCTELLPLIKLQGKVVNVSNP*GVRTPLQVQP*ICTKIPKMKPPQRKTRGGLLNNFLEKT 660 VCTELLPLIK QG+VVNVS+ VR P + K + + + GL+N F+E T Sbjct: 121 VCTELLPLIKPQGRVVNVSSIMSVRALKSCSPELQQKF-RSETITEEELVGLMNKFVEDT 179 Query: 661 KKRGAPKGG 687 KK K G Sbjct: 180 KKGVHQKEG 188 >ref|NP_001227.1| carbonyl reductase 3 [Homo sapiens] Length = 277 Score = 215 bits (548), Expect = 5e-56 Identities = 106/140 (75%), Positives = 126/140 (90%) Frame = +1 Query: 121 MSSNTRVALVTGANKGIGFAIVRDLCRQFAGDVVLTARDVARGQAAVKQLQAEGLSPRFH 300 MSS +RVALVTGAN+GIG AI R+LCRQF+GDVVLTARDVARGQAAV+QLQAEGLSPRFH Sbjct: 1 MSSCSRVALVTGANRGIGLAIARELCRQFSGDVVLTARDVARGQAAVQQLQAEGLSPRFH 60 Query: 301 QLDIIDLQSIRALCDFLRKEYGGLDVLVDNAAIAFQLDNPTPFHVQAELTMKTNFMGNRN 480 QLDI DLQSIRAL DFLRKEYGGL+VLV+NAA+AF+ D+P PF ++AE+T+KTNF RN Sbjct: 61 QLDIDDLQSIRALRDFLRKEYGGLNVLVNNAAVAFKSDDPMPFDIKAEMTLKTNFFATRN 120 Query: 481 VCTELLPLIKLQGKVVNVSN 540 +C ELLP++K G+VVN+S+ Sbjct: 121 MCNELLPIMKPHGRVVNISS 140 >ref|XP_371503.3| PREDICTED: similar to short-chain dehydrogenase/reductase 1 [Homo sapiens] Length = 891 Score = 55.8 bits (133), Expect = 6e-08 Identities = 39/115 (33%), Positives = 65/115 (56%), Gaps = 3/115 (2%) Frame = +1 Query: 136 RVALVTGANKGIGFAIVRDLCRQFAGDVVLTARDVARGQAAVKQLQAEGLSPR--FHQLD 309 ++A+VTGAN GIG + +DL R V+LT + GQ A+ ++QA S R ++D Sbjct: 603 KIAIVTGANSGIGKVVSQDLAR-CGAQVILTCQSRECGQQALAEIQAASNSNRLLLGEVD 661 Query: 310 IIDLQSIRALCDFLRKEYGGLDVLVDNAAIAFQLDNP-TPFHVQAELTMKTNFMG 471 + + SIR+ L +E + +LV+NA ++ + TP + +LT TN++G Sbjct: 662 LSSMTSIRSFARRLLQENPEIHLLVNNAGVSGMIPKTLTPGGL--DLTFVTNYVG 714 >ref|XP_947127.1| PREDICTED: similar to short-chain dehydrogenase/reductase 1 [Homo sapiens] Length = 916 Score = 55.8 bits (133), Expect = 6e-08 Identities = 39/115 (33%), Positives = 65/115 (56%), Gaps = 3/115 (2%) Frame = +1 Query: 136 RVALVTGANKGIGFAIVRDLCRQFAGDVVLTARDVARGQAAVKQLQAEGLSPR--FHQLD 309 ++A+VTGAN GIG + +DL R V+LT + GQ A+ ++QA S R ++D Sbjct: 628 KIAIVTGANSGIGKVVSQDLAR-CGAQVILTCQSRECGQQALAEIQAASNSNRLLLGEVD 686 Query: 310 IIDLQSIRALCDFLRKEYGGLDVLVDNAAIAFQLDNP-TPFHVQAELTMKTNFMG 471 + + SIR+ L +E + +LV+NA ++ + TP + +LT TN++G Sbjct: 687 LSSMTSIRSFARRLLQENPEIHLLVNNAGVSGMIPKTLTPGGL--DLTFVTNYVG 739 >ref|XP_950347.1| PREDICTED: similar to dehydrogenase/reductase (SDR family) member 4 like 2 isoform 12 [Homo sapiens] Length = 186 Score = 55.1 bits (131), Expect = 1e-07 Identities = 46/132 (34%), Positives = 63/132 (47%), Gaps = 3/132 (2%) Frame = +1 Query: 136 RVALVTGANKGIGFAIVRDLCRQFAGDVVLTARDVARGQAAVKQLQAEGLSPRFHQLDII 315 +VALVT + GIGFAI R L + A VV+++R AV LQ EGLS + Sbjct: 31 KVALVTASTDGIGFAIARRLAQDRA-HVVVSSRKQQNVDQAVATLQGEGLSVTGTVCHVG 89 Query: 316 DLQSIRALCDFLRKEYGGLDVLVDNAAIAFQLDNP---TPFHVQAELTMKTNFMGNRNVC 486 + L K +GG+D+LV NAA+ NP + V E+ K F G +C Sbjct: 90 KAEDRERLVAMAVKLHGGIDILVSNAAV-----NPFFGSLMDVTEEVWDKGWFSGVPGLC 144 Query: 487 TELLPLIKLQGK 522 + L L G+ Sbjct: 145 SSLQATSSLDGQ 156 >ref|NP_689656.1| retinol dehydrogenase 12 (all-trans and 9-cis) [Homo sapiens] Length = 316 Score = 53.5 bits (127), Expect = 3e-07 Identities = 42/142 (29%), Positives = 74/142 (52%), Gaps = 7/142 (4%) Frame = +1 Query: 136 RVALVTGANKGIGFAIVRDLCRQFAGDVVLTARDVARGQAAVKQLQAEGLSPRF--HQLD 309 +V ++TGAN GIG R+L + A V + RDV +G++A +++ + + + +LD Sbjct: 40 KVVVITGANTGIGKETARELASRGAR-VYIACRDVLKGESAASEIRVDTKNSQVLVRKLD 98 Query: 310 IIDLQSIRALCDFLRKEYGGLDVLVDNAAIAFQLDNPTPFHVQA---ELTMKTNFMGNRN 480 + D +SIRA + E L +L++NA + P+ A E + N +G+ Sbjct: 99 LSDTKSIRAFAEGFLAEEKQLHILINNAGVMM-----CPYSKTADGFETHLGVNHLGHFL 153 Query: 481 VCTELLPLIKLQ--GKVVNVSN 540 + LL +K+ +VVNVS+ Sbjct: 154 LTYLLLEQLKVSAPARVVNVSS 175 >ref|NP_065956.1| retinol dehydrogenase 14 (all-trans and 9-cis) [Homo sapiens] Length = 336 Score = 53.1 bits (126), Expect = 4e-07 Identities = 36/103 (34%), Positives = 52/103 (50%), Gaps = 15/103 (14%) Frame = +1 Query: 136 RVALVTGANKGIGFAIVRDLCRQFAGDVVLTARDVARGQAAVKQLQAE-------GLSPR 294 + L+TGAN G+G A +L R V++ RD AR + A QL+ E G P Sbjct: 44 KTVLITGANSGLGRATAAELLR-LGARVIMGCRDRARAEEAAGQLRRELRQAAECGPEPG 102 Query: 295 F--------HQLDIIDLQSIRALCDFLRKEYGGLDVLVDNAAI 399 +LD+ L+S+RA C + +E LDVL++NA I Sbjct: 103 VSGVGELIVRELDLASLRSVRAFCQEMLQEEPRLDVLINNAGI 145 >ref|NP_057110.2| androgen-regulated short-chain dehydrogenase/reductase 1 [Homo sapiens] Length = 318 Score = 52.0 bits (123), Expect = 9e-07 Identities = 44/142 (30%), Positives = 72/142 (50%), Gaps = 7/142 (4%) Frame = +1 Query: 136 RVALVTGANKGIGFAIVRDLCRQFAGDVVLTARDVARGQAAVKQLQAEGLSPRF--HQLD 309 +V +VTGAN GIG ++L ++ A V L RDV +G+ K++Q + + +LD Sbjct: 42 KVVVVTGANTGIGKETAKELAQRGAR-VYLACRDVEKGELVAKEIQTTTGNQQVLVRKLD 100 Query: 310 IIDLQSIRALCDFLRKEYGGLDVLVDNAAIAFQLDNPTPFHVQA---ELTMKTNFMGNRN 480 + D +SIRA E L VL++NA + P+ A E+ + N +G+ Sbjct: 101 LSDTKSIRAFAKGFLAEEKHLHVLINNAGVMM-----CPYSKTADGFEMHIGVNHLGHFL 155 Query: 481 VCTELLPLIK--LQGKVVNVSN 540 + LL +K ++VNVS+ Sbjct: 156 LTHLLLEKLKESAPSRIVNVSS 177 >ref|NP_932349.1| dehydrogenase/reductase (SDR family) member 4 like 2 [Homo sapiens] Length = 230 Score = 52.0 bits (123), Expect = 9e-07 Identities = 35/88 (39%), Positives = 47/88 (53%) Frame = +1 Query: 136 RVALVTGANKGIGFAIVRDLCRQFAGDVVLTARDVARGQAAVKQLQAEGLSPRFHQLDII 315 +VALVT + GIGFAI R L + A VV+++R AV LQ EGLS + Sbjct: 31 KVALVTASTDGIGFAIARRLAQDRA-HVVVSSRKQQNVDQAVATLQGEGLSVTGTVCHVG 89 Query: 316 DLQSIRALCDFLRKEYGGLDVLVDNAAI 399 + L K +GG+D+LV NAA+ Sbjct: 90 KAEDRERLVAMAVKLHGGIDILVSNAAV 117 >ref|XP_950350.1| PREDICTED: similar to dehydrogenase/reductase (SDR family) member 4 like 2 isoform 14 [Homo sapiens] Length = 190 Score = 52.0 bits (123), Expect = 9e-07 Identities = 35/88 (39%), Positives = 47/88 (53%) Frame = +1 Query: 136 RVALVTGANKGIGFAIVRDLCRQFAGDVVLTARDVARGQAAVKQLQAEGLSPRFHQLDII 315 +VALVT + GIGFAI R L + A VV+++R AV LQ EGLS + Sbjct: 31 KVALVTASTDGIGFAIARRLAQDRA-HVVVSSRKQQNVDQAVATLQGEGLSVTGTVCHVG 89 Query: 316 DLQSIRALCDFLRKEYGGLDVLVDNAAI 399 + L K +GG+D+LV NAA+ Sbjct: 90 KAEDRERLVAMAVKLHGGIDILVSNAAV 117 Database: RefSeqHP Posted date: Aug 2, 2006 12:57 AM Number of letters in database: 17,774,539 Number of sequences in database: 39,411 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 43,422,045 Number of Sequences: 39411 Number of extensions: 1319565 Number of successful extensions: 7246 Number of sequences better than 1.0e-05: 10 Number of HSP's better than 0.0 without gapping: 5169 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 7139 length of database: 17,774,539 effective HSP length: 104 effective length of database: 13,675,795 effective search space used: 3760843625 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
Search to RefSeqMP
BLASTX 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= 20060611S-058412 (1140 letters) Database: RefSeqMP 45,328 sequences; 21,768,885 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Alignment gi|NP_766635.1| carbonyl reductase 3 [Mus musculus] 220 2e-57 Alignment gi|NP_031646.1| carbonyl reductase 1 [Mus musculus] 213 4e-55 Alignment gi|XP_487442.1| PREDICTED: similar to Carbonyl reductase [NADPH... 210 3e-54 Alignment gi|XP_989090.1| PREDICTED: similar to Carbonyl reductase [NADPH... 210 3e-54 Alignment gi|XP_359206.3| PREDICTED: similar to Carbonyl reductase [NADPH... 197 2e-50 Alignment gi|NP_780581.1| retinol dehydrogenase 13 (all-trans and 9-cis) ... 60 4e-09 Alignment gi|NP_067532.2| short-chain dehydrogenase/reductase 1 [Mus musc... 57 4e-08 Alignment gi|NP_076186.1| alcohol dehydrogenase PAN2 [Mus musculus] 56 8e-08 Alignment gi|NP_084293.1| retinol dehydrogenase 12 [Mus musculus] 54 2e-07 Alignment gi|NP_001028498.1| dehydrogenase/reductase (SDR family) X chrom... 54 3e-07 >ref|NP_766635.1| carbonyl reductase 3 [Mus musculus] Length = 277 Score = 220 bits (560), Expect = 2e-57 Identities = 110/145 (75%), Positives = 130/145 (89%) Frame = +1 Query: 121 MSSNTRVALVTGANKGIGFAIVRDLCRQFAGDVVLTARDVARGQAAVKQLQAEGLSPRFH 300 MSS +RVALVTGANKGIGFAI RDLCR+F+GDVVLTARD ARG+AAV+QLQAEGLSPRFH Sbjct: 1 MSSCSRVALVTGANKGIGFAITRDLCRKFSGDVVLTARDEARGRAAVQQLQAEGLSPRFH 60 Query: 301 QLDIIDLQSIRALCDFLRKEYGGLDVLVDNAAIAFQLDNPTPFHVQAELTMKTNFMGNRN 480 QLDI D QSIRAL DFLRKEYGGL+VLV+NA IAF++D+PTPF +QAE+T+KTNF RN Sbjct: 61 QLDIDDPQSIRALRDFLRKEYGGLNVLVNNAGIAFRMDDPTPFDIQAEVTLKTNFFATRN 120 Query: 481 VCTELLPLIKLQGKVVNVSNP*GVR 555 VCTELLP++K G+VVN+S+ G++ Sbjct: 121 VCTELLPIMKPHGRVVNISSLQGLK 145 >ref|NP_031646.1| carbonyl reductase 1 [Mus musculus] Length = 277 Score = 213 bits (541), Expect = 4e-55 Identities = 115/182 (63%), Positives = 140/182 (76%) Frame = +1 Query: 121 MSSNTRVALVTGANKGIGFAIVRDLCRQFAGDVVLTARDVARGQAAVKQLQAEGLSPRFH 300 MSS+ VALVTGANKGIGFAI RDLCR+F+GDVVL ARD RGQ AV++LQAEGLSPRFH Sbjct: 1 MSSSRPVALVTGANKGIGFAITRDLCRKFSGDVVLAARDEERGQTAVQKLQAEGLSPRFH 60 Query: 301 QLDIIDLQSIRALCDFLRKEYGGLDVLVDNAAIAFQLDNPTPFHVQAELTMKTNFMGNRN 480 QLDI + QSIRAL DFL KEYGGLDVLV+ A IAF++++ TPFH+QAE+TM+TNF G R+ Sbjct: 61 QLDIDNPQSIRALRDFLLKEYGGLDVLVNKAGIAFKVNDDTPFHIQAEVTMETNFFGTRD 120 Query: 481 VCTELLPLIKLQGKVVNVSNP*GVRTPLQVQP*ICTKIPKMKPPQRKTRGGLLNNFLEKT 660 VC ELLPLIK QG+VVNVS+ +R + + K + + + GL+N F+E T Sbjct: 121 VCKELLPLIKPQGRVVNVSSMVSLRALKNCRLELQQKF-RSETITEEELVGLMNKFVEDT 179 Query: 661 KK 666 KK Sbjct: 180 KK 181 >ref|XP_487442.1| PREDICTED: similar to Carbonyl reductase [NADPH] 1 (NADPH-dependent carbonyl reductase 1) [Mus musculus] Length = 277 Score = 210 bits (534), Expect = 3e-54 Identities = 111/182 (60%), Positives = 138/182 (75%) Frame = +1 Query: 121 MSSNTRVALVTGANKGIGFAIVRDLCRQFAGDVVLTARDVARGQAAVKQLQAEGLSPRFH 300 MS +RVALVTG NKGIGF I+RDLC++F+GDVVLTARD ARG AAV++LQAEGL+PRFH Sbjct: 1 MSPCSRVALVTGGNKGIGFEIIRDLCQKFSGDVVLTARDEARGCAAVQKLQAEGLNPRFH 60 Query: 301 QLDIIDLQSIRALCDFLRKEYGGLDVLVDNAAIAFQLDNPTPFHVQAELTMKTNFMGNRN 480 QLDI D QSI AL DFL KEY GLDVLV+NA IAF++D+PTPFH++ E+TMKTNF G R+ Sbjct: 61 QLDIDDPQSIHALRDFLLKEYKGLDVLVNNAGIAFKVDDPTPFHIKGEVTMKTNFFGTRD 120 Query: 481 VCTELLPLIKLQGKVVNVSNP*GVRTPLQVQP*ICTKIPKMKPPQRKTRGGLLNNFLEKT 660 VC E+LPLIK QG+VVNVS+ + P + K + + + GL+N ++E Sbjct: 121 VCKEMLPLIKPQGRVVNVSSMVSLSALKDCSPELQQKF-RSETITEEELVGLMNKYVEDA 179 Query: 661 KK 666 KK Sbjct: 180 KK 181 >ref|XP_989090.1| PREDICTED: similar to Carbonyl reductase [NADPH] 1 (NADPH-dependent carbonyl reductase 1) [Mus musculus] Length = 277 Score = 210 bits (534), Expect = 3e-54 Identities = 111/182 (60%), Positives = 138/182 (75%) Frame = +1 Query: 121 MSSNTRVALVTGANKGIGFAIVRDLCRQFAGDVVLTARDVARGQAAVKQLQAEGLSPRFH 300 MS +RVALVTG NKGIGF I+RDLC++F+GDVVLTARD ARG AAV++LQAEGL+PRFH Sbjct: 1 MSPCSRVALVTGGNKGIGFEIIRDLCQKFSGDVVLTARDEARGCAAVQKLQAEGLNPRFH 60 Query: 301 QLDIIDLQSIRALCDFLRKEYGGLDVLVDNAAIAFQLDNPTPFHVQAELTMKTNFMGNRN 480 QLDI D QSI AL DFL KEY GLDVLV+NA IAF++D+PTPFH++ E+TMKTNF G R+ Sbjct: 61 QLDIDDPQSIHALRDFLLKEYKGLDVLVNNAGIAFKVDDPTPFHIKGEVTMKTNFFGTRD 120 Query: 481 VCTELLPLIKLQGKVVNVSNP*GVRTPLQVQP*ICTKIPKMKPPQRKTRGGLLNNFLEKT 660 VC E+LPLIK QG+VVNVS+ + P + K + + + GL+N ++E Sbjct: 121 VCKEMLPLIKPQGRVVNVSSMVSLSALKDCSPELQQKF-RSETITEEELVGLMNKYVEDA 179 Query: 661 KK 666 KK Sbjct: 180 KK 181 >ref|XP_359206.3| PREDICTED: similar to Carbonyl reductase [NADPH] 1 (NADPH-dependent carbonyl reductase 1) [Mus musculus] Length = 277 Score = 197 bits (500), Expect = 2e-50 Identities = 111/189 (58%), Positives = 134/189 (70%) Frame = +1 Query: 121 MSSNTRVALVTGANKGIGFAIVRDLCRQFAGDVVLTARDVARGQAAVKQLQAEGLSPRFH 300 M S +R+ALVTGANKGIGFAI RDLC+QF+GDVVLTARD ARG AAV++LQAEGL PRFH Sbjct: 1 MPSCSRIALVTGANKGIGFAITRDLCQQFSGDVVLTARDEARGLAAVQKLQAEGLIPRFH 60 Query: 301 QLDIIDLQSIRALCDFLRKEYGGLDVLVDNAAIAFQLDNPTPFHVQAELTMKTNFMGNRN 480 QLDI D QSI AL +FL KEYGGLDVLV+NA IA++ + T FH+ E MKTNF G + Sbjct: 61 QLDINDPQSIHALRNFLLKEYGGLDVLVNNAGIAYKGTDLTHFHILREAAMKTNFFGTQA 120 Query: 481 VCTELLPLIKLQGKVVNVSNP*GVRTPLQVQP*ICTKIPKMKPPQRKTRGGLLNNFLEKT 660 VCTELLPLIK QG+VVN+S+ + + K + + + GL+N F+E T Sbjct: 121 VCTELLPLIKTQGRVVNISSLISLEALKNCSLELQQKF-RSETITEEELVGLMNKFVEDT 179 Query: 661 KKRGAPKGG 687 KK K G Sbjct: 180 KKGVHAKEG 188 >ref|NP_780581.1| retinol dehydrogenase 13 (all-trans and 9-cis) [Mus musculus] Length = 334 Score = 60.1 bits (144), Expect = 4e-09 Identities = 34/90 (37%), Positives = 55/90 (61%), Gaps = 2/90 (2%) Frame = +1 Query: 136 RVALVTGANKGIGFAIVRDLCRQFAGDVVLTARDVARGQAAVKQLQAEGLSPRFH--QLD 309 + +VTGAN GIG +L ++ G+V+L RD+ + + A K ++ E L+PR +LD Sbjct: 39 KTVIVTGANTGIGKQTALELAKR-GGNVILACRDMEKCEVAAKDIRGETLNPRVRAERLD 97 Query: 310 IIDLQSIRALCDFLRKEYGGLDVLVDNAAI 399 + L+SIR + KE +D+LV+NAA+ Sbjct: 98 LASLKSIREFARKVIKEEERVDILVNNAAV 127 >ref|NP_067532.2| short-chain dehydrogenase/reductase 1 [Mus musculus] Length = 316 Score = 57.0 bits (136), Expect = 4e-08 Identities = 51/143 (35%), Positives = 80/143 (55%), Gaps = 8/143 (5%) Frame = +1 Query: 136 RVALVTGANKGIGFAIVRDLCRQFAGDVVLTARDVARGQAAVKQLQA-EGLSPRF-HQLD 309 +VA+VTGAN GIG +DL ++ A V L RDV +G+ A +++QA G S F +LD Sbjct: 39 KVAIVTGANTGIGKETAKDLAQRGA-RVYLACRDVDKGELAAREIQAVTGNSQVFVRKLD 97 Query: 310 IIDLQSIRALC-DFLRKEYGGLDVLVDNAAIAFQLDNPTPFHVQA---ELTMKTNFMGNR 477 + D +SIRA DFL +E L +L++NA + P+ A E+ + N +G+ Sbjct: 98 LADTKSIRAFAKDFLAEE-KHLHLLINNAGVMM-----CPYSKTADGFEMHIGVNHLGHF 151 Query: 478 NVCTELLPLIK--LQGKVVNVSN 540 + LL +K ++VN+S+ Sbjct: 152 LLTHLLLEKLKESAPSRIVNLSS 174 >ref|NP_076186.1| alcohol dehydrogenase PAN2 [Mus musculus] Length = 334 Score = 55.8 bits (133), Expect = 8e-08 Identities = 37/100 (37%), Positives = 52/100 (52%), Gaps = 12/100 (12%) Frame = +1 Query: 136 RVALVTGANKGIGFAIVRDLCRQFAGDVVLTARDVARGQAAVKQL-----QAEGLSPR-- 294 + L+TGAN G+G A +L R V++ RD AR + A QL QA G P Sbjct: 45 KTVLITGANSGLGRATAAELLR-LGARVIMGCRDRARAEEAAGQLRQELCQAGGAGPDGT 103 Query: 295 -----FHQLDIIDLQSIRALCDFLRKEYGGLDVLVDNAAI 399 +LD+ L+S+RA C L +E LDVL++NA + Sbjct: 104 DGQLVVKELDLASLRSVRAFCQELLQEEPRLDVLINNAGV 143 >ref|NP_084293.1| retinol dehydrogenase 12 [Mus musculus] Length = 316 Score = 54.3 bits (129), Expect = 2e-07 Identities = 31/90 (34%), Positives = 54/90 (60%), Gaps = 2/90 (2%) Frame = +1 Query: 136 RVALVTGANKGIGFAIVRDLCRQFAGDVVLTARDVARGQAAVKQLQAEGLSPR--FHQLD 309 +V ++TGAN GIG R+L R+ A V + RDV +G++A +++A+ + + +LD Sbjct: 40 KVVVITGANTGIGKETARELARRGA-RVYIACRDVLKGESAASEIRADTKNSQVLVRKLD 98 Query: 310 IIDLQSIRALCDFLRKEYGGLDVLVDNAAI 399 + D +SIRA + E L +L++NA + Sbjct: 99 LSDTKSIRAFAERFLAEEKKLHILINNAGV 128 >ref|NP_001028498.1| dehydrogenase/reductase (SDR family) X chromosome [Mus musculus] Length = 335 Score = 53.9 bits (128), Expect = 3e-07 Identities = 44/130 (33%), Positives = 63/130 (48%), Gaps = 2/130 (1%) Frame = +1 Query: 136 RVALVTGANKGIGFAIVRDLCRQFAGDVVLTARDVARGQAAVKQLQAEGLSPRFH--QLD 309 RVA+VTGA GIG + R L R VV+ D RGQ V ++AE S R H LD Sbjct: 44 RVAIVTGATAGIGRSTARQLAR-LGMCVVVAGNDEHRGQEVVSSIRAEMGSDRAHFLPLD 102 Query: 310 IIDLQSIRALCDFLRKEYGGLDVLVDNAAIAFQLDNPTPFHVQAELTMKTNFMGNRNVCT 489 + L S+R + L +LV+NA + + T + L + NF+G+ + Sbjct: 103 LASLASVRGFARDFQALGLPLHLLVNNAGVMLEPRAETEDGFERHLGV--NFLGHFLLTL 160 Query: 490 ELLPLIKLQG 519 LLP ++ G Sbjct: 161 LLLPALRASG 170 Database: RefSeqMP Posted date: Aug 2, 2006 12:58 AM Number of letters in database: 21,768,885 Number of sequences in database: 45,328 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 50,796,012 Number of Sequences: 45328 Number of extensions: 1461324 Number of successful extensions: 7539 Number of sequences better than 1.0e-05: 10 Number of HSP's better than 0.0 without gapping: 5697 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 7436 length of database: 21,768,885 effective HSP length: 105 effective length of database: 17,009,445 effective search space used: 4660587930 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)