Animal-Genome cDNA 20060611S-059192


Search to RefSeqSP

BLASTX 2.2.10 [Oct-19-2004]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20060611S-059192
         (927 letters)

Database: RefSeqSP 
           1040 sequences; 434,620 total letters

Searching...done

 ***** No hits found ******

  Database: RefSeqSP
    Posted date:  Aug 1, 2006  7:14 PM
  Number of letters in database: 434,620
  Number of sequences in database:  1040
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 842,452
Number of Sequences: 1040
Number of extensions: 21567
Number of successful extensions: 62
Number of sequences better than 1.0e-05: 0
Number of HSP's better than  0.0 without gapping: 57
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 62
length of database: 434,620
effective HSP length: 76
effective length of database: 355,580
effective search space used: 82494560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

Search to RefSeqBP

BLASTX 2.2.10 [Oct-19-2004]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20060611S-059192
         (927 letters)

Database: RefSeqBP 
           33,508 sequences; 16,112,626 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_899207.1| double substrate-specificity short chain dehydr...   186   2e-47
Alignment   gi|XP_582373.2| PREDICTED: similar to Retinol dehydrogenase 11 ...   159   4e-39
Alignment   gi|XP_870721.1| PREDICTED: similar to Retinol dehydrogenase 11 ...   144   7e-35
Alignment   gi|XP_584629.2| PREDICTED: similar to Retinol dehydrogenase 13,...    96   5e-20
Alignment   gi|XP_592820.2| PREDICTED: similar to retinol dehydrogenase 11 ...    92   7e-19
Alignment   gi|XP_582319.2| PREDICTED: similar to retinol dehydrogenase 14 ...    87   2e-17
Alignment   gi|XP_584642.2| PREDICTED: similar to retinol dehydrogenase 11 ...    73   4e-13
Alignment   gi|XP_584810.2| PREDICTED: similar to retinol dehydrogenase 13 ...    70   2e-12
Alignment   gi|XP_583859.2| PREDICTED: similar to short chain dehydrogenase...    67   3e-11
Alignment   gi|XP_591168.2| PREDICTED: similar to dehydrogenase/reductase (...    64   1e-10

>ref|NP_899207.1| double substrate-specificity short chain dehydrogenase/reductase 2
           [Bos taurus]
          Length = 316

 Score =  186 bits (472), Expect = 2e-47
 Identities = 95/120 (79%), Positives = 100/120 (83%), Gaps = 1/120 (0%)
 Frame = +1

Query: 394 NAGVMLCPYSKTADG-FETHLGVNHLGTGVTTYAVHPGIVQSELVRHSFLLCLLWRLFSR 570
           N G   C +SK A+  F   L     GTGVTTYAVHPGIV+S+LVRHSFLLCLLWRLFS 
Sbjct: 195 NLGFAYC-HSKLANVLFTRELAKRLKGTGVTTYAVHPGIVRSKLVRHSFLLCLLWRLFSP 253

Query: 571 FLKTAREGAQTSLHCALAEGLEPLSGKYFSDCKRAWVSPRARNNKTAERLWNVSCELLGI 750
           FLKT  EGAQTSLHCALAEGLEPLSGKYFSDCK+ WVSPRARNNKTAERLWNVSCELLGI
Sbjct: 254 FLKTTWEGAQTSLHCALAEGLEPLSGKYFSDCKKTWVSPRARNNKTAERLWNVSCELLGI 313



 Score =  171 bits (434), Expect = 6e-43
 Identities = 87/99 (87%), Positives = 91/99 (91%)
 Frame = +1

Query: 193 QLHPSGARVYIACRDVLKGESAASEIRADTKNSQVLVRKLDLSDTKSIRAFAEGFLTEEK 372
           +L   GARVYIACRDVLKGESAASEI+ADTKNSQVLVRKLDLSDTKSIRAFAEGFL EEK
Sbjct: 58  ELARRGARVYIACRDVLKGESAASEIQADTKNSQVLVRKLDLSDTKSIRAFAEGFLAEEK 117

Query: 373 QLHILINNAGVMLCPYSKTADGFETHLGVNHLGTGVTTY 489
           QLHILINNAGVMLCPYSKTADGFETHL VNHLG  + T+
Sbjct: 118 QLHILINNAGVMLCPYSKTADGFETHLAVNHLGHFLLTH 156


>ref|XP_582373.2| PREDICTED: similar to Retinol dehydrogenase 11 (Retinal reductase
           1) (RalR1) (Prostate short-chain dehydrogenase/reductase
           1) (Androgen-regulated short-chain
           dehydrogenase/reductase 1) (HCV core-binding protein
           HCBP12) isoform 1 [Bos taurus]
          Length = 308

 Score =  159 bits (401), Expect = 4e-39
 Identities = 106/254 (41%), Positives = 130/254 (51%), Gaps = 65/254 (25%)
 Frame = +1

Query: 193 QLHPSGARVYIACRDVLKGESAASEIRADTKNSQVLVRKLD--------------LSDTK 330
           +L   GARVY+ACRDV  GE  A EI+  T N QVLVRKLD              L D K
Sbjct: 34  ELARRGARVYLACRDVQNGELVAREIQMMTGNQQVLVRKLDLADTKSIRAFAKRFLEDHK 93

Query: 331 SIR----------------AFAEGFLTEEKQLHILINN---------------------- 396
            I                 A   G+L      H+L+                        
Sbjct: 94  YIHLINSVGFPGSSAGKDSACNTGYLGHFLLTHLLLEKLEESAPSRVVNVSSLAHLLGRI 153

Query: 397 ------------AGVMLCPYSKTADG-FETHLGVNHLGTGVTTYAVHPGIVQSELVRHSF 537
                       +G+  C +SK A+  F   L     G+GVT Y+VHPG V SELVRHS 
Sbjct: 154 HFHNLQGEKFYQSGLAYC-HSKLANILFTQELARRLKGSGVTVYSVHPGTVNSELVRHSA 212

Query: 538 LLCLLWRLFSRFLKTAREGAQTSLHCALAEGLEPLSGKYFSDCKRAWVSPRARNNKTAER 717
           L+  +W +FS F+KT ++GAQTSL+CAL EGLE LSG +FSDC  AWVS +ARN   A R
Sbjct: 213 LMRWIWWIFSFFIKTPQQGAQTSLYCALTEGLEVLSGNHFSDCHVAWVSAQARNETVARR 272

Query: 718 LWNVSCELLGIPVE 759
           LW+VSC+LLGIPV+
Sbjct: 273 LWDVSCDLLGIPVD 286


>ref|XP_870721.1| PREDICTED: similar to Retinol dehydrogenase 11 (Retinal reductase
           1) (RalR1) (Prostate short-chain dehydrogenase/reductase
           1) (Androgen-regulated short-chain
           dehydrogenase/reductase 1) (HCV core-binding protein
           HCBP12) isoform 2 [Bos taurus]
          Length = 314

 Score =  144 bits (364), Expect = 7e-35
 Identities = 100/261 (38%), Positives = 128/261 (49%), Gaps = 72/261 (27%)
 Frame = +1

Query: 193 QLHPSGARVYIACRDVLKGESAASEIR---------------ADTKNSQVLVRKLDLSDT 327
           +L   GARVY+ACRDV  GE  A EI+               ADTK+ +   ++  L D 
Sbjct: 34  ELARRGARVYLACRDVQNGELVAREIQMMTGNQQVLVRKLDLADTKSIRAFAKRF-LEDH 92

Query: 328 KSIR----------------------AFAEGFLTEEKQLHILINN--------------- 396
           K I                       A   G+L      H+L+                 
Sbjct: 93  KYIHLINSSPHFLICGFPGSSAGKDSACNTGYLGHFLLTHLLLEKLEESAPSRVVNVSSL 152

Query: 397 -------------------AGVMLCPYSKTADG-FETHLGVNHLGTGVTTYAVHPGIVQS 516
                              +G+  C +SK A+  F   L     G+GVT Y+VHPG V S
Sbjct: 153 AHLLGRIHFHNLQGEKFYQSGLAYC-HSKLANILFTQELARRLKGSGVTVYSVHPGTVNS 211

Query: 517 ELVRHSFLLCLLWRLFSRFLKTAREGAQTSLHCALAEGLEPLSGKYFSDCKRAWVSPRAR 696
           ELVRHS L+  +W +FS F+KT ++GAQTSL+CAL EGLE LSG +FSDC  AWVS +AR
Sbjct: 212 ELVRHSALMRWIWWIFSFFIKTPQQGAQTSLYCALTEGLEVLSGNHFSDCHVAWVSAQAR 271

Query: 697 NNKTAERLWNVSCELLGIPVE 759
           N   A RLW+VSC+LLGIPV+
Sbjct: 272 NETVARRLWDVSCDLLGIPVD 292


>ref|XP_584629.2| PREDICTED: similar to Retinol dehydrogenase 13, partial [Bos
           taurus]
          Length = 148

 Score = 95.5 bits (236), Expect = 5e-20
 Identities = 49/92 (53%), Positives = 61/92 (66%)
 Frame = +1

Query: 193 QLHPSGARVYIACRDVLKGESAASEIRADTKNSQVLVRKLDLSDTKSIRAFAEGFLTEEK 372
           +L   G  + +ACRD+ K E+AA EIR +T N +V  R LDL+  KSIR FA     EE+
Sbjct: 57  ELAKRGGNIILACRDMEKCEAAAKEIRGETLNHRVNARHLDLASLKSIREFAAKVTEEEE 116

Query: 373 QLHILINNAGVMLCPYSKTADGFETHLGVNHL 468
            +HILINNA VM CP+  T DGFE  LGVN+L
Sbjct: 117 HVHILINNAAVMRCPHWTTEDGFEMQLGVNYL 148


>ref|XP_592820.2| PREDICTED: similar to retinol dehydrogenase 11 (predicted) [Bos
           taurus]
          Length = 377

 Score = 91.7 bits (226), Expect = 7e-19
 Identities = 53/107 (49%), Positives = 66/107 (61%), Gaps = 3/107 (2%)
 Frame = +1

Query: 439 FETHLGVNHLGTGVTTYAVHPGIVQSEL-VRH--SFLLCLLWRLFSRFLKTAREGAQTSL 609
           F   L     GTGVT YA HPG V SEL +RH   +L  LL  L    L+  R GAQT L
Sbjct: 207 FARELATQLEGTGVTCYAAHPGPVNSELFLRHVPGWLRPLLRPLAWLVLRAPRGGAQTPL 266

Query: 610 HCALAEGLEPLSGKYFSDCKRAWVSPRARNNKTAERLWNVSCELLGI 750
           +CAL EG+EPLSG+YF++C    V P AR+++ A RLW  S +L G+
Sbjct: 267 YCALQEGIEPLSGRYFANCHVEEVPPAARDDRAAHRLWEASRKLAGL 313



 Score = 81.6 bits (200), Expect = 8e-16
 Identities = 44/108 (40%), Positives = 68/108 (62%)
 Frame = +1

Query: 193 QLHPSGARVYIACRDVLKGESAASEIRADTKNSQVLVRKLDLSDTKSIRAFAEGFLTEEK 372
           +L   GARV +ACR   +GE+AA ++R ++ N++V+   LDL+   S+RAFA  FL+ E 
Sbjct: 55  ELARRGARVVLACRSRERGEAAAFDLRQESGNNEVIFMALDLASLASVRAFATAFLSSEP 114

Query: 373 QLHILINNAGVMLCPYSKTADGFETHLGVNHLGTGVTTYAVHPGIVQS 516
           +L ILI+NAG+  C   +T + F   L VNH+G  + T+ + P +  S
Sbjct: 115 RLDILIHNAGISSC--GRTREPFNLLLRVNHIGPFLLTHLLLPRLKTS 160


>ref|XP_582319.2| PREDICTED: similar to retinol dehydrogenase 14 (all-trans and
           9-cis) [Bos taurus]
          Length = 420

 Score = 87.0 bits (214), Expect = 2e-17
 Identities = 46/101 (45%), Positives = 62/101 (61%), Gaps = 13/101 (12%)
 Frame = +1

Query: 208 GARVYIACRDVLKGESAASEIRADT---------KNS----QVLVRKLDLSDTKSIRAFA 348
           GARV + CRD  + E AA ++R +           NS    +++V++LDL+   S+R+F 
Sbjct: 151 GARVIMGCRDRERAEEAAGQLRREVCPAGGPDSGPNSGGAGELVVKELDLASLSSVRSFC 210

Query: 349 EGFLTEEKQLHILINNAGVMLCPYSKTADGFETHLGVNHLG 471
           +  L EE +L +LINNAGV  CPY KT DGFE   GVNHLG
Sbjct: 211 QEMLQEEPRLDVLINNAGVFQCPYMKTEDGFEMQFGVNHLG 251



 Score = 78.2 bits (191), Expect = 9e-15
 Identities = 40/98 (40%), Positives = 61/98 (62%), Gaps = 4/98 (4%)
 Frame = +1

Query: 469 GTGVTTYAVHPGIVQSELVRHSFLLCLLWRLFS----RFLKTAREGAQTSLHCALAEGLE 636
           GT VT   +HPGIV++ L RH  +  L+  LF+     F KT  EGAQT+++ A +  +E
Sbjct: 321 GTSVTVNVLHPGIVRTNLGRHIHIPLLVRPLFNLVSWAFFKTPEEGAQTAVYLASSPEVE 380

Query: 637 PLSGKYFSDCKRAWVSPRARNNKTAERLWNVSCELLGI 750
            +SG+YF DCK   + P+A +   A +LW++S  ++GI
Sbjct: 381 GVSGRYFGDCKEEELLPKAMDESVARKLWDISEVMVGI 418


>ref|XP_584642.2| PREDICTED: similar to retinol dehydrogenase 11 (predicted) [Bos
           taurus]
          Length = 330

 Score = 72.8 bits (177), Expect = 4e-13
 Identities = 37/98 (37%), Positives = 62/98 (63%)
 Frame = +1

Query: 193 QLHPSGARVYIACRDVLKGESAASEIRADTKNSQVLVRKLDLSDTKSIRAFAEGFLTEEK 372
           +L   GARV +ACR   +G+ A +EI+A +K++++L+ ++DLS   SIR+FA+  L E  
Sbjct: 68  ELAHRGARVILACRSRERGQQALAEIQATSKSNRLLLGEVDLSSMASIRSFAQRLLQECP 127

Query: 373 QLHILINNAGVMLCPYSKTADGFETHLGVNHLGTGVTT 486
           ++H+L+NNA V   P + T +G +     N+ G  + T
Sbjct: 128 EIHLLVNNAAVCGFPTTLTPEGLDLTFATNYTGPFLLT 165



 Score = 60.1 bits (144), Expect = 2e-09
 Identities = 35/96 (36%), Positives = 57/96 (59%), Gaps = 2/96 (2%)
 Frame = +1

Query: 469 GTGVTTYAVHPGIVQSELVRH-SFLLCLLWRLFSRFLKTAREGAQTSLHCALAEGLEPLS 645
           GTGVT  +V PG+V +++++H S+    L+ L S F K +++GA   L+ +LA+ L+ +S
Sbjct: 231 GTGVTVNSVDPGVVYTKIMKHFSWSYRFLFWLLSFFFKDSKQGAVPVLYLSLAKELDGIS 290

Query: 646 GKYF-SDCKRAWVSPRARNNKTAERLWNVSCELLGI 750
           GK+F S C        A++   A+ LWN S  L  +
Sbjct: 291 GKHFSSSCVITLPPEAAQDPHVAQSLWNTSVRLTNL 326


>ref|XP_584810.2| PREDICTED: similar to retinol dehydrogenase 13 (all-trans and
           9-cis) [Bos taurus]
          Length = 223

 Score = 70.1 bits (170), Expect = 2e-12
 Identities = 40/100 (40%), Positives = 58/100 (58%), Gaps = 6/100 (6%)
 Frame = +1

Query: 469 GTGVTTYAVHPGIVQSELVRHS------FLLCLLWRLFSRFLKTAREGAQTSLHCALAEG 630
           GTGVT  A+HPG+ ++EL RH+      F    L  +F   +K+    AQ S++ A+AE 
Sbjct: 108 GTGVTVNALHPGVARTELGRHTGMHSSAFSSFTLGPIFWLLVKSPELAAQPSVYLAVAEE 167

Query: 631 LEPLSGKYFSDCKRAWVSPRARNNKTAERLWNVSCELLGI 750
           LE +SGKYF   K    +P A + + A+RLW  S  L+G+
Sbjct: 168 LEGVSGKYFDVLKEKPPAPEAEDEEVAKRLWAESVRLVGL 207


>ref|XP_583859.2| PREDICTED: similar to short chain dehydrogenase/reductase [Bos
           taurus]
          Length = 317

 Score = 66.6 bits (161), Expect = 3e-11
 Identities = 38/98 (38%), Positives = 54/98 (55%)
 Frame = +1

Query: 208 GARVYIACRDVLKGESAASEIRADTKNSQVLVRKLDLSDTKSIRAFAEGFLTEEKQLHIL 387
           G  V++ CRD  + E A +EI  ++ N  + +  +DLS  KS+  F E F  +E  L++L
Sbjct: 64  GGTVHLVCRDHSRAEGAKAEIIRESGNQNIFLHIVDLSLPKSVWKFVENF-KQEHTLNVL 122

Query: 388 INNAGVMLCPYSKTADGFETHLGVNHLGTGVTTYAVHP 501
           INNAG M+     T DG E +   N LG  V T A+ P
Sbjct: 123 INNAGCMVNKRELTEDGLEKNFATNTLGVYVLTTALIP 160


>ref|XP_591168.2| PREDICTED: similar to dehydrogenase/reductase (SDR family) X-linked
           [Bos taurus]
          Length = 251

 Score = 64.3 bits (155), Expect = 1e-10
 Identities = 32/74 (43%), Positives = 45/74 (60%)
 Frame = +1

Query: 313 DLSDTKSIRAFAEGFLTEEKQLHILINNAGVMLCPYSKTADGFETHLGVNHLGTGVTTYA 492
           DL+  +SIR F + F  ++  LH+L+NNAGVM+ P   T DGFE H GVN+LG  + T  
Sbjct: 11  DLASMRSIREFVQTFKMKKLPLHVLVNNAGVMMVPQRTTEDGFEEHFGVNYLGHFLLTNL 70

Query: 493 VHPGIVQSELVRHS 534
           +   + +S    HS
Sbjct: 71  LLDTLQESGAPGHS 84



 Score = 48.5 bits (114), Expect = 7e-06
 Identities = 34/101 (33%), Positives = 48/101 (47%), Gaps = 7/101 (6%)
 Frame = +1

Query: 469 GTGVTTYAVHPGIVQSELVRHSFLLCLLW--RLFSRFL-----KTAREGAQTSLHCALAE 627
           G  VT     PG+V ++L R+ F     W  RL  + L     KT  EGA TS++ A+  
Sbjct: 139 GMPVTASVADPGVVDTDLYRYVF-----WGTRLVKKLLGWWVFKTPDEGAWTSVYAAVTP 193

Query: 628 GLEPLSGKYFSDCKRAWVSPRARNNKTAERLWNVSCELLGI 750
            LE L G+Y  + K         + +   +LW  SC+L GI
Sbjct: 194 ALEGLGGRYLYNEKETRSLEATYDPELQRQLWARSCQLTGI 234


  Database: RefSeqBP
    Posted date:  Aug 1, 2006  7:14 PM
  Number of letters in database: 16,112,626
  Number of sequences in database:  33,508
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 31,758,861
Number of Sequences: 33508
Number of extensions: 836258
Number of successful extensions: 2857
Number of sequences better than 1.0e-05: 10
Number of HSP's better than  0.0 without gapping: 2566
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2849
length of database: 16,112,626
effective HSP length: 101
effective length of database: 12,728,318
effective search space used: 2634761826
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

Search to RefSeqCP

BLASTX 2.2.10 [Oct-19-2004]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20060611S-059192
         (927 letters)

Database: RefSeqCP 
           33,732 sequences; 19,266,565 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|XP_547866.2| PREDICTED: similar to retinol dehydrogenase 12 ...   187   2e-47
Alignment   gi|XP_854354.1| PREDICTED: similar to Retinol dehydrogenase 11 ...   147   1e-35
Alignment   gi|XP_854127.1| PREDICTED: similar to Retinol dehydrogenase 13 ...    99   8e-21
Alignment   gi|XP_857582.1| PREDICTED: similar to retinol dehydrogenase 14 ...    94   2e-19
Alignment   gi|XP_540096.2| PREDICTED: similar to retinol dehydrogenase 14 ...    92   9e-19
Alignment   gi|XP_548293.2| PREDICTED: similar to retinol dehydrogenase 11 ...    91   2e-18
Alignment   gi|XP_533000.2| PREDICTED: similar to Retinol dehydrogenase 12 ...    70   4e-12
Alignment   gi|XP_852623.1| PREDICTED: similar to WW domain-containing oxid...    70   4e-12
Alignment   gi|XP_852222.1| PREDICTED: similar to dehydrogenase/reductase (...    68   1e-11

>ref|XP_547866.2| PREDICTED: similar to retinol dehydrogenase 12 (all-trans and
           9-cis) [Canis familiaris]
          Length = 303

 Score =  187 bits (474), Expect = 2e-47
 Identities = 89/104 (85%), Positives = 94/104 (90%)
 Frame = +1

Query: 439 FETHLGVNHLGTGVTTYAVHPGIVQSELVRHSFLLCLLWRLFSRFLKTAREGAQTSLHCA 618
           F   L     GTGVTTYAVHPG+V SELVRHSFLLCLLWR+FS F+K+AREGAQTSLHCA
Sbjct: 197 FTRELAKRLQGTGVTTYAVHPGVVSSELVRHSFLLCLLWRIFSPFVKSAREGAQTSLHCA 256

Query: 619 LAEGLEPLSGKYFSDCKRAWVSPRARNNKTAERLWNVSCELLGI 750
           LAEGLEPLSGKYFSDCKRAWVSPRAR+NKTAERLWNVSCELLGI
Sbjct: 257 LAEGLEPLSGKYFSDCKRAWVSPRARDNKTAERLWNVSCELLGI 300



 Score =  175 bits (443), Expect = 6e-44
 Identities = 90/112 (80%), Positives = 97/112 (86%)
 Frame = +1

Query: 193 QLHPSGARVYIACRDVLKGESAASEIRADTKNSQVLVRKLDLSDTKSIRAFAEGFLTEEK 372
           +L   GARVYIACRDVLKGESAASEIRADTKNSQVLVRKLDLSDTKSIRAFAEGFL EEK
Sbjct: 45  ELARRGARVYIACRDVLKGESAASEIRADTKNSQVLVRKLDLSDTKSIRAFAEGFLAEEK 104

Query: 373 QLHILINNAGVMLCPYSKTADGFETHLGVNHLGTGVTTYAVHPGIVQSELVR 528
           QLHILINNAGVM+CPYSKTADGFETHLGVNHLG  + T+ +   + +S   R
Sbjct: 105 QLHILINNAGVMMCPYSKTADGFETHLGVNHLGHFLLTHLLLERLKESTPAR 156


>ref|XP_854354.1| PREDICTED: similar to Retinol dehydrogenase 11 (Retinal reductase
           1) (RalR1) (Prostate short-chain dehydrogenase/reductase
           1) (Androgen-regulated short-chain
           dehydrogenase/reductase 1) (HCV core-binding protein
           HCBP12) [Canis familiaris]
          Length = 337

 Score =  147 bits (371), Expect = 1e-35
 Identities = 72/99 (72%), Positives = 82/99 (82%)
 Frame = +1

Query: 193 QLHPSGARVYIACRDVLKGESAASEIRADTKNSQVLVRKLDLSDTKSIRAFAEGFLTEEK 372
           +L   GARVY+ACRDVLKGE  A EI+  T N QVLVRKLDL+DTKSIRAFA+GFL EEK
Sbjct: 79  ELAQRGARVYLACRDVLKGELVAREIQTMTGNKQVLVRKLDLADTKSIRAFAKGFLAEEK 138

Query: 373 QLHILINNAGVMLCPYSKTADGFETHLGVNHLGTGVTTY 489
            LHILINNAGVM+CPY+KT DGFE H+GVNHLG  + T+
Sbjct: 139 HLHILINNAGVMMCPYTKTVDGFEMHMGVNHLGHFLLTH 177



 Score =  137 bits (345), Expect = 1e-32
 Identities = 70/123 (56%), Positives = 90/123 (73%), Gaps = 1/123 (0%)
 Frame = +1

Query: 394 NAGVMLCPYSKTADG-FETHLGVNHLGTGVTTYAVHPGIVQSELVRHSFLLCLLWRLFSR 570
           N+G+  C +SK A+  F   L     G+G+T Y+VHPG V+SELVRHS  +  +W LFS 
Sbjct: 216 NSGLAYC-HSKLANILFTQELARRLKGSGITAYSVHPGTVKSELVRHSPFMKWMWWLFSF 274

Query: 571 FLKTAREGAQTSLHCALAEGLEPLSGKYFSDCKRAWVSPRARNNKTAERLWNVSCELLGI 750
           F+KT ++GAQTSL+CA+ EGLE LSG +FSDC  AWVS +ARN   A RLW+VSC+LLGI
Sbjct: 275 FIKTPQQGAQTSLYCAITEGLEVLSGHHFSDCSVAWVSAQARNETIARRLWDVSCDLLGI 334

Query: 751 PVE 759
           PV+
Sbjct: 335 PVD 337


>ref|XP_854127.1| PREDICTED: similar to Retinol dehydrogenase 13 [Canis familiaris]
          Length = 334

 Score = 98.6 bits (244), Expect = 8e-21
 Identities = 49/93 (52%), Positives = 62/93 (66%)
 Frame = +1

Query: 193 QLHPSGARVYIACRDVLKGESAASEIRADTKNSQVLVRKLDLSDTKSIRAFAEGFLTEEK 372
           +L   G  + +ACRD+ K E+AA EIR +T N +V    LDL+  KSIR FA   + EE+
Sbjct: 57  ELARRGGNIILACRDMEKCEAAAKEIRGETLNHRVSAWHLDLASLKSIREFAAKIIEEEE 116

Query: 373 QLHILINNAGVMLCPYSKTADGFETHLGVNHLG 471
           Q+HIL+NNA VM CP+  T DGFE   GVNHLG
Sbjct: 117 QVHILVNNAAVMRCPHWTTKDGFEMQFGVNHLG 149



 Score = 71.6 bits (174), Expect = 1e-12
 Identities = 40/100 (40%), Positives = 58/100 (58%), Gaps = 6/100 (6%)
 Frame = +1

Query: 469 GTGVTTYAVHPGIVQSELVRHS------FLLCLLWRLFSRFLKTAREGAQTSLHCALAEG 630
           GTGVT  A+HPG+ ++EL RH+      F    L  +F   +K+ +  AQ S + A+AE 
Sbjct: 220 GTGVTVNALHPGVARTELGRHTGMHSSAFSSFTLGPIFWLLVKSPQLAAQPSTYLAVAEE 279

Query: 631 LEPLSGKYFSDCKRAWVSPRARNNKTAERLWNVSCELLGI 750
           LE +SGKYF   K    +P A + + A+RLW  S  L+G+
Sbjct: 280 LEGVSGKYFDGLKEKAPAPEAEDEEVAQRLWAESARLVGL 319


>ref|XP_857582.1| PREDICTED: similar to retinol dehydrogenase 14 (all-trans and
           9-cis) isoform 4 [Canis familiaris]
          Length = 307

 Score = 94.0 bits (232), Expect = 2e-19
 Identities = 72/239 (30%), Positives = 111/239 (46%), Gaps = 58/239 (24%)
 Frame = +1

Query: 208 GARVYIACRDVLKGESAASEIRADTKNS-------------QVLVRKLDLSDTKSIRAFA 348
           GARV + CRD  + E AA ++R + + +             +++VR+LDL+  +S+RAF 
Sbjct: 67  GARVIMGCRDRARAEEAAGQLRRELRQAGGREPGSDVGAAGELVVRELDLASLRSVRAFC 126

Query: 349 EG-----------FLTEEKQLHILINNAGVMLCP-------------------------- 417
           +            FL     L +L N+A   +                            
Sbjct: 127 QEVLQFGVNHLGHFLLTNLLLGLLKNSAPSRIVVVSSKLYKYGDINFEDLNSEQSYNKSF 186

Query: 418 -YSKTADG---FETHLGVNHLGTGVTTYAVHPGIVQSELVRHSFLLCLLWRLFS----RF 573
            YS++      F   L     GT VT   +HPGIV++ L RH  +  L+  LF+     F
Sbjct: 187 CYSRSKLANILFTRELARRLEGTNVTVNVLHPGIVRTNLGRHIHIPLLVRPLFNLVSWAF 246

Query: 574 LKTAREGAQTSLHCALAEGLEPLSGKYFSDCKRAWVSPRARNNKTAERLWNVSCELLGI 750
            KT  EGAQTS++ A +  +E +SGKYF DCK   + P+A +   A +LW++S  ++GI
Sbjct: 247 FKTPVEGAQTSVYLASSPEVEGVSGKYFGDCKEEELLPKAMDESVARKLWDISEVMVGI 305


>ref|XP_540096.2| PREDICTED: similar to retinol dehydrogenase 14 (all-trans and
           9-cis) isoform 1 [Canis familiaris]
          Length = 336

 Score = 91.7 bits (226), Expect = 9e-19
 Identities = 45/101 (44%), Positives = 63/101 (62%), Gaps = 13/101 (12%)
 Frame = +1

Query: 208 GARVYIACRDVLKGESAASEIRADTKNS-------------QVLVRKLDLSDTKSIRAFA 348
           GARV + CRD  + E AA ++R + + +             +++VR+LDL+  +S+RAF 
Sbjct: 67  GARVIMGCRDRARAEEAAGQLRRELRQAGGREPGSDVGAAGELVVRELDLASLRSVRAFC 126

Query: 349 EGFLTEEKQLHILINNAGVMLCPYSKTADGFETHLGVNHLG 471
           +  L EE +L +LINNAG+  CPY KT DGFE   GVNHLG
Sbjct: 127 QEVLQEEPRLDVLINNAGIFQCPYMKTEDGFEMQFGVNHLG 167



 Score = 79.3 bits (194), Expect = 5e-15
 Identities = 42/98 (42%), Positives = 61/98 (62%), Gaps = 4/98 (4%)
 Frame = +1

Query: 469 GTGVTTYAVHPGIVQSELVRHSFLLCLLWRLFS----RFLKTAREGAQTSLHCALAEGLE 636
           GT VT   +HPGIV++ L RH  +  L+  LF+     F KT  EGAQTS++ A +  +E
Sbjct: 237 GTNVTVNVLHPGIVRTNLGRHIHIPLLVRPLFNLVSWAFFKTPVEGAQTSVYLASSPEVE 296

Query: 637 PLSGKYFSDCKRAWVSPRARNNKTAERLWNVSCELLGI 750
            +SGKYF DCK   + P+A +   A +LW++S  ++GI
Sbjct: 297 GVSGKYFGDCKEEELLPKAMDESVARKLWDISEVMVGI 334


>ref|XP_548293.2| PREDICTED: similar to retinol dehydrogenase 11 (predicted) [Canis
           familiaris]
          Length = 377

 Score = 90.5 bits (223), Expect = 2e-18
 Identities = 52/107 (48%), Positives = 65/107 (60%), Gaps = 3/107 (2%)
 Frame = +1

Query: 439 FETHLGVNHLGTGVTTYAVHPGIVQSEL-VRH--SFLLCLLWRLFSRFLKTAREGAQTSL 609
           F   L     GTGVT YA HPG V SEL +RH   +L  LL  L    L+  R GAQT L
Sbjct: 207 FARELATQLEGTGVTCYAAHPGPVNSELFLRHVPGWLCPLLRPLAWLMLRAPRGGAQTPL 266

Query: 610 HCALAEGLEPLSGKYFSDCKRAWVSPRARNNKTAERLWNVSCELLGI 750
           +CAL EG+EPLSG+YF++C    V P AR+++ A +LW  S  L G+
Sbjct: 267 YCALQEGIEPLSGRYFANCHVEEVPPAARDDRAAHQLWEASKRLAGL 313



 Score = 79.7 bits (195), Expect = 4e-15
 Identities = 43/103 (41%), Positives = 65/103 (63%)
 Frame = +1

Query: 193 QLHPSGARVYIACRDVLKGESAASEIRADTKNSQVLVRKLDLSDTKSIRAFAEGFLTEEK 372
           +L   GARV +ACR   +GE+AA ++R ++ N++V+   LDL+   S+RAFA  FL+ E 
Sbjct: 55  ELARRGARVVLACRSRERGEAAAFDLRQESGNNEVIFMALDLASLASVRAFATAFLSSEP 114

Query: 373 QLHILINNAGVMLCPYSKTADGFETHLGVNHLGTGVTTYAVHP 501
           +L ILI+NAG+  C   +T   F   L VNH+G  + T+ + P
Sbjct: 115 RLDILIHNAGISSC--GRTHKPFNLLLRVNHIGPFLLTHLLLP 155


>ref|XP_533000.2| PREDICTED: similar to Retinol dehydrogenase 12 [Canis familiaris]
          Length = 596

 Score = 69.7 bits (169), Expect = 4e-12
 Identities = 35/98 (35%), Positives = 60/98 (61%)
 Frame = +1

Query: 193 QLHPSGARVYIACRDVLKGESAASEIRADTKNSQVLVRKLDLSDTKSIRAFAEGFLTEEK 372
           +L   GARV +ACR+  +G+ A +EI+  +K + +L+ ++DLS   SIR+FA   L E  
Sbjct: 334 ELARRGARVILACRNWERGQKALAEIQVASKGTCLLLGQVDLSSMASIRSFARWLLQEYP 393

Query: 373 QLHILINNAGVMLCPYSKTADGFETHLGVNHLGTGVTT 486
           ++H+L+NNA +   P + T +G +     N++G  + T
Sbjct: 394 EIHLLVNNAAISGFPKTLTPEGLDLTFATNYVGPFLLT 431



 Score = 65.1 bits (157), Expect = 9e-11
 Identities = 37/96 (38%), Positives = 60/96 (62%), Gaps = 2/96 (2%)
 Frame = +1

Query: 469 GTGVTTYAVHPGIVQSELVR-HSFLLCLLWRLFSRFLKTAREGAQTSLHCALAEGLEPLS 645
           GTGVT  +V PG+V +E+++ + +L   L+ LFS F K  ++GA   L+ +LA+ L+ +S
Sbjct: 497 GTGVTVNSVDPGVVYTEIMKPYPWLYRFLFWLFSFFCKDVKQGAIPVLYLSLAKELDGVS 556

Query: 646 GKYF-SDCKRAWVSPRARNNKTAERLWNVSCELLGI 750
           GKYF S C     +  A++ + A+ LWN S +L  +
Sbjct: 557 GKYFSSSCMITLPTEAAQDPQVAQSLWNASVQLTNL 592


>ref|XP_852623.1| PREDICTED: similar to WW domain-containing oxidoreductase isoform 1
           [Canis familiaris]
          Length = 383

 Score = 69.7 bits (169), Expect = 4e-12
 Identities = 34/88 (38%), Positives = 51/88 (57%)
 Frame = +1

Query: 208 GARVYIACRDVLKGESAASEIRADTKNSQVLVRKLDLSDTKSIRAFAEGFLTEEKQLHIL 387
           GA V +ACR++ +   A S+I  +   ++V    LDL+  +S++ FA+ F  +   LH+L
Sbjct: 148 GAHVILACRNMTRANEAVSQILGEWHKAKVEAMTLDLALLRSVQHFAQAFKAKNVSLHVL 207

Query: 388 INNAGVMLCPYSKTADGFETHLGVNHLG 471
           + NA     P+S T DG ET   VNHLG
Sbjct: 208 VCNAAAFALPWSLTKDGLETTFQVNHLG 235


>ref|XP_852222.1| PREDICTED: similar to dehydrogenase/reductase (SDR family) X-linked
           [Canis familiaris]
          Length = 387

 Score = 67.8 bits (164), Expect = 1e-11
 Identities = 34/88 (38%), Positives = 50/88 (56%)
 Frame = +1

Query: 208 GARVYIACRDVLKGESAASEIRADTKNSQVLVRKLDLSDTKSIRAFAEGFLTEEKQLHIL 387
           G  V +A  +         +I+ +T N +V     DL+  +SIR F + F  ++  LH+L
Sbjct: 119 GMHVILAGNNDSSAPDVVRKIQEETLNDKVEFLYCDLASLRSIRQFVQKFKKKKIPLHVL 178

Query: 388 INNAGVMLCPYSKTADGFETHLGVNHLG 471
           +NNAGVM+ P   T DGFE H G+N+LG
Sbjct: 179 VNNAGVMMVPERTTEDGFEEHFGLNYLG 206



 Score = 51.6 bits (122), Expect = 1e-06
 Identities = 35/96 (36%), Positives = 48/96 (50%), Gaps = 2/96 (2%)
 Frame = +1

Query: 469 GTGVTTYAVHPGIVQSELVRHSFL-LCLLWRLFSR-FLKTAREGAQTSLHCALAEGLEPL 642
           G+ VT   V PG+V + L RH F    L+ +LF   F KT  EGA TS++ A+   LE L
Sbjct: 282 GSPVTANVVDPGVVNTNLYRHVFWGTRLIKKLFGWWFFKTPDEGAWTSVYAAVTPDLEGL 341

Query: 643 SGKYFSDCKRAWVSPRARNNKTAERLWNVSCELLGI 750
            G+Y  + K         +      LW  SC++ GI
Sbjct: 342 GGRYLYNEKETKSLAVTYDLDLQTELWARSCQMTGI 377


  Database: RefSeqCP
    Posted date:  Aug 1, 2006  9:25 PM
  Number of letters in database: 19,266,565
  Number of sequences in database:  33,732
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 37,195,808
Number of Sequences: 33732
Number of extensions: 975561
Number of successful extensions: 3471
Number of sequences better than 1.0e-05: 9
Number of HSP's better than  0.0 without gapping: 3051
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3459
length of database: 19,266,565
effective HSP length: 103
effective length of database: 15,792,169
effective search space used: 3237394645
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

Search to RefSeqHP

BLASTX 2.2.10 [Oct-19-2004]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20060611S-059192
         (927 letters)

Database: RefSeqHP 
           39,411 sequences; 17,774,539 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_689656.1| retinol dehydrogenase 12 (all-trans and 9-cis) ...   204   7e-53
Alignment   gi|NP_057110.2| androgen-regulated short-chain dehydrogenase/re...   149   3e-36
Alignment   gi|NP_065956.1| retinol dehydrogenase 14 (all-trans and 9-cis) ...    92   5e-19
Alignment   gi|NP_653284.1| hypothetical protein LOC147015 [Homo sapiens]         88   9e-18
Alignment   gi|NP_612421.1| retinol dehydrogenase 13 (all-trans and 9-cis) ...    85   1e-16
Alignment   gi|NP_660160.1| dehydrogenase/reductase (SDR family) X-linked [...    76   3e-14
Alignment   gi|NP_057457.1| WW domain-containing oxidoreductase isoform 1 [...    69   4e-12
Alignment   gi|XP_371503.3| PREDICTED: similar to short-chain dehydrogenase...    63   3e-10
Alignment   gi|XP_947127.1| PREDICTED: similar to short-chain dehydrogenase...    63   3e-10
Alignment   gi|NP_078981.1| hypothetical protein FLJ13639 isoform 2 [Homo s...    54   2e-07

>ref|NP_689656.1| retinol dehydrogenase 12 (all-trans and 9-cis) [Homo sapiens]
          Length = 316

 Score =  204 bits (520), Expect = 7e-53
 Identities = 130/262 (49%), Positives = 145/262 (55%), Gaps = 76/262 (29%)
 Frame = +1

Query: 193 QLHPSGARVYIACRDVLKGESAASEIR---------------ADTKNSQVLVRKLDLSDT 327
           +L   GARVYIACRDVLKGESAASEIR               +DTK+ +       L++ 
Sbjct: 58  ELASRGARVYIACRDVLKGESAASEIRVDTKNSQVLVRKLDLSDTKSIRAFAEGF-LAEE 116

Query: 328 KSIRAF--------------AEGFLTEEKQLHILINNAGVMLCPY--------------- 420
           K +                 A+GF T     H+ +N+ G  L  Y               
Sbjct: 117 KQLHILINNAGVMMCPYSKTADGFET-----HLGVNHLGHFLLTYLLLEQLKVSAPARVV 171

Query: 421 -------------------------------SKTADG-FETHLGVNHLGTGVTTYAVHPG 504
                                          SK A+  F   L     GTGVTTYAVHPG
Sbjct: 172 NVSSVAHHIGKIPFHDLQSEKRYSRGFAYCHSKLANVLFTRELAKRLQGTGVTTYAVHPG 231

Query: 505 IVQSELVRHSFLLCLLWRLFSRFLKTAREGAQTSLHCALAEGLEPLSGKYFSDCKRAWVS 684
           +V+SELVRHS LLCLLWRLFS F+KTAREGAQTSLHCALAEGLEPLSGKYFSDCKR WVS
Sbjct: 232 VVRSELVRHSSLLCLLWRLFSPFVKTAREGAQTSLHCALAEGLEPLSGKYFSDCKRTWVS 291

Query: 685 PRARNNKTAERLWNVSCELLGI 750
           PRARNNKTAERLWNVSCELLGI
Sbjct: 292 PRARNNKTAERLWNVSCELLGI 313



 Score =  172 bits (437), Expect = 3e-43
 Identities = 99/156 (63%), Positives = 102/156 (65%), Gaps = 39/156 (25%)
 Frame = +1

Query: 139 MLAVLGLLTSFLFFSCM---------------------------------------*QLH 201
           ML  LGLLTSF  F  M                                        +L 
Sbjct: 1   MLVTLGLLTSFFSFLYMVAPSIRKFFAGGVCRTNVQLPGKVVVITGANTGIGKETARELA 60

Query: 202 PSGARVYIACRDVLKGESAASEIRADTKNSQVLVRKLDLSDTKSIRAFAEGFLTEEKQLH 381
             GARVYIACRDVLKGESAASEIR DTKNSQVLVRKLDLSDTKSIRAFAEGFL EEKQLH
Sbjct: 61  SRGARVYIACRDVLKGESAASEIRVDTKNSQVLVRKLDLSDTKSIRAFAEGFLAEEKQLH 120

Query: 382 ILINNAGVMLCPYSKTADGFETHLGVNHLGTGVTTY 489
           ILINNAGVM+CPYSKTADGFETHLGVNHLG  + TY
Sbjct: 121 ILINNAGVMMCPYSKTADGFETHLGVNHLGHFLLTY 156


>ref|NP_057110.2| androgen-regulated short-chain dehydrogenase/reductase 1 [Homo
           sapiens]
          Length = 318

 Score =  149 bits (376), Expect = 3e-36
 Identities = 73/99 (73%), Positives = 82/99 (82%)
 Frame = +1

Query: 193 QLHPSGARVYIACRDVLKGESAASEIRADTKNSQVLVRKLDLSDTKSIRAFAEGFLTEEK 372
           +L   GARVY+ACRDV KGE  A EI+  T N QVLVRKLDLSDTKSIRAFA+GFL EEK
Sbjct: 60  ELAQRGARVYLACRDVEKGELVAKEIQTTTGNQQVLVRKLDLSDTKSIRAFAKGFLAEEK 119

Query: 373 QLHILINNAGVMLCPYSKTADGFETHLGVNHLGTGVTTY 489
            LH+LINNAGVM+CPYSKTADGFE H+GVNHLG  + T+
Sbjct: 120 HLHVLINNAGVMMCPYSKTADGFEMHIGVNHLGHFLLTH 158



 Score =  144 bits (363), Expect = 1e-34
 Identities = 74/123 (60%), Positives = 91/123 (73%), Gaps = 1/123 (0%)
 Frame = +1

Query: 394 NAGVMLCPYSKTADG-FETHLGVNHLGTGVTTYAVHPGIVQSELVRHSFLLCLLWRLFSR 570
           NAG+  C +SK A+  F   L     G+GVTTY+VHPG VQSELVRHS  +  +W LFS 
Sbjct: 197 NAGLAYC-HSKLANILFTQELARRLKGSGVTTYSVHPGTVQSELVRHSSFMRWMWWLFSF 255

Query: 571 FLKTAREGAQTSLHCALAEGLEPLSGKYFSDCKRAWVSPRARNNKTAERLWNVSCELLGI 750
           F+KT ++GAQTSLHCAL EGLE LSG +FSDC  AWVS +ARN   A RLW+VSC+LLG+
Sbjct: 256 FIKTPQQGAQTSLHCALTEGLEILSGNHFSDCHVAWVSVQARNETIARRLWDVSCDLLGL 315

Query: 751 PVE 759
           P++
Sbjct: 316 PID 318


>ref|NP_065956.1| retinol dehydrogenase 14 (all-trans and 9-cis) [Homo sapiens]
          Length = 336

 Score = 92.4 bits (228), Expect = 5e-19
 Identities = 45/101 (44%), Positives = 63/101 (62%), Gaps = 13/101 (12%)
 Frame = +1

Query: 208 GARVYIACRDVLKGESAASEIRADTKNS-------------QVLVRKLDLSDTKSIRAFA 348
           GARV + CRD  + E AA ++R + + +             +++VR+LDL+  +S+RAF 
Sbjct: 67  GARVIMGCRDRARAEEAAGQLRRELRQAAECGPEPGVSGVGELIVRELDLASLRSVRAFC 126

Query: 349 EGFLTEEKQLHILINNAGVMLCPYSKTADGFETHLGVNHLG 471
           +  L EE +L +LINNAG+  CPY KT DGFE   GVNHLG
Sbjct: 127 QEMLQEEPRLDVLINNAGIFQCPYMKTEDGFEMQFGVNHLG 167



 Score = 77.8 bits (190), Expect = 1e-14
 Identities = 40/98 (40%), Positives = 61/98 (62%), Gaps = 4/98 (4%)
 Frame = +1

Query: 469 GTGVTTYAVHPGIVQSELVRHSFLLCLLWRLFS----RFLKTAREGAQTSLHCALAEGLE 636
           GT VT   +HPGIV++ L RH  +  L+  LF+     F KT  EGAQTS++ A +  +E
Sbjct: 237 GTNVTVNVLHPGIVRTNLGRHIHIPLLVKPLFNLVSWAFFKTPVEGAQTSIYLASSPEVE 296

Query: 637 PLSGKYFSDCKRAWVSPRARNNKTAERLWNVSCELLGI 750
            +SG+YF DCK   + P+A +   A +LW++S  ++G+
Sbjct: 297 GVSGRYFGDCKEEELLPKAMDESVARKLWDISEVMVGL 334


>ref|NP_653284.1| hypothetical protein LOC147015 [Homo sapiens]
          Length = 327

 Score = 88.2 bits (217), Expect = 9e-18
 Identities = 50/96 (52%), Positives = 62/96 (64%), Gaps = 3/96 (3%)
 Frame = +1

Query: 472 TGVTTYAVHPGIVQSEL-VRH--SFLLCLLWRLFSRFLKTAREGAQTSLHCALAEGLEPL 642
           TGVT YA HPG V SEL +RH   +L  LL  L    L+  R GAQT L+CAL EG+EPL
Sbjct: 168 TGVTCYAAHPGPVNSELFLRHVPGWLRPLLRPLAWLVLRAPRGGAQTPLYCALQEGIEPL 227

Query: 643 SGKYFSDCKRAWVSPRARNNKTAERLWNVSCELLGI 750
           SG+YF++C    V P AR+++ A RLW  S  L G+
Sbjct: 228 SGRYFANCHVEEVPPAARDDRAAHRLWEASKRLAGL 263



 Score = 82.4 bits (202), Expect = 5e-16
 Identities = 43/103 (41%), Positives = 66/103 (64%)
 Frame = +1

Query: 193 QLHPSGARVYIACRDVLKGESAASEIRADTKNSQVLVRKLDLSDTKSIRAFAEGFLTEEK 372
           +L   GARV +ACR   +GE+AA ++R ++ N++V+   LDL+   S+RAFA  FL+ E 
Sbjct: 5   ELARRGARVVLACRSQERGEAAAFDLRQESGNNEVIFMALDLASLASVRAFATAFLSSEP 64

Query: 373 QLHILINNAGVMLCPYSKTADGFETHLGVNHLGTGVTTYAVHP 501
           +L ILI+NAG+  C   +T + F   L VNH+G  + T+ + P
Sbjct: 65  RLDILIHNAGISSC--GRTREAFNLLLRVNHIGPFLLTHLLLP 105


>ref|NP_612421.1| retinol dehydrogenase 13 (all-trans and 9-cis) [Homo sapiens]
          Length = 260

 Score = 84.7 bits (208), Expect = 1e-16
 Identities = 43/76 (56%), Positives = 52/76 (68%)
 Frame = +1

Query: 244 KGESAASEIRADTKNSQVLVRKLDLSDTKSIRAFAEGFLTEEKQLHILINNAGVMLCPYS 423
           K E+AA +IR +T N  V  R LDL+  KSIR FA   + EE+++ ILINNAGVM CP+ 
Sbjct: 3   KCEAAAKDIRGETLNHHVNARHLDLASLKSIREFAAKIIEEEERVDILINNAGVMRCPHW 62

Query: 424 KTADGFETHLGVNHLG 471
            T DGFE   GVNHLG
Sbjct: 63  TTEDGFEMQFGVNHLG 78



 Score = 67.8 bits (164), Expect = 1e-11
 Identities = 38/100 (38%), Positives = 56/100 (56%), Gaps = 6/100 (6%)
 Frame = +1

Query: 469 GTGVTTYAVHPGIVQSELVRHS------FLLCLLWRLFSRFLKTAREGAQTSLHCALAEG 630
           G+GVT  A+HPG+ ++EL RH+      F    L  +F   +K+    AQ S + A+AE 
Sbjct: 149 GSGVTVNALHPGVARTELGRHTGIHGSTFSSTTLGPIFWLLVKSPELAAQPSTYLAVAEE 208

Query: 631 LEPLSGKYFSDCKRAWVSPRARNNKTAERLWNVSCELLGI 750
           L  +SGKYF   K+   +P A + + A RLW  S  L+G+
Sbjct: 209 LADVSGKYFDGLKQKAPAPEAEDEEVARRLWAESARLVGL 248


>ref|NP_660160.1| dehydrogenase/reductase (SDR family) X-linked [Homo sapiens]
          Length = 330

 Score = 76.3 bits (186), Expect = 3e-14
 Identities = 43/109 (39%), Positives = 61/109 (55%)
 Frame = +1

Query: 208 GARVYIACRDVLKGESAASEIRADTKNSQVLVRKLDLSDTKSIRAFAEGFLTEEKQLHIL 387
           G  V IA  +  K +   S+I+ +T N +V     DL+   SIR F + F  ++  LH+L
Sbjct: 67  GMHVIIAGNNDSKAKQVVSKIKEETLNDKVEFLYCDLASMTSIRQFVQKFKMKKIPLHVL 126

Query: 388 INNAGVMLCPYSKTADGFETHLGVNHLGTGVTTYAVHPGIVQSELVRHS 534
           INNAGVM+ P  KT DGFE H G+N+LG  + T  +   + +S    HS
Sbjct: 127 INNAGVMMVPQRKTRDGFEEHFGLNYLGHFLLTNLLLDTLKESGSPGHS 175



 Score = 57.8 bits (138), Expect = 1e-08
 Identities = 35/100 (35%), Positives = 51/100 (51%), Gaps = 6/100 (6%)
 Frame = +1

Query: 469 GTGVTTYAVHPGIVQSELVRHSFLLCLL------WRLFSRFLKTAREGAQTSLHCALAEG 630
           G+ VT   V PG+V ++L +H F    L      W LF    KT  EGA TS++ A+   
Sbjct: 230 GSHVTANVVDPGVVNTDLYKHVFWATRLAKKLLGWLLF----KTPDEGAWTSIYAAVTPE 285

Query: 631 LEPLSGKYFSDCKRAWVSPRARNNKTAERLWNVSCELLGI 750
           LE + G+Y  + K         N K  ++LW+ SCE+ G+
Sbjct: 286 LEGVGGRYLYNEKETKSLHVTYNQKLQQQLWSKSCEMTGV 325


>ref|NP_057457.1| WW domain-containing oxidoreductase isoform 1 [Homo sapiens]
          Length = 414

 Score = 69.3 bits (168), Expect = 4e-12
 Identities = 37/91 (40%), Positives = 57/91 (62%), Gaps = 1/91 (1%)
 Frame = +1

Query: 475 GVTTYAVHPG-IVQSELVRHSFLLCLLWRLFSRFLKTAREGAQTSLHCALAEGLEPLSGK 651
           GVT+ AVHPG ++ S + R  ++  LL+ L   F K+ ++GA T+++CA    LE L G 
Sbjct: 315 GVTSNAVHPGNMMYSNIHRSWWVYTLLFTLARPFTKSMQQGAATTVYCAAVPELEGLGGM 374

Query: 652 YFSDCKRAWVSPRARNNKTAERLWNVSCELL 744
           YF++C R   SP A++ +TA  LW +S  L+
Sbjct: 375 YFNNCCRCMPSPEAQSEETARTLWALSERLI 405



 Score = 69.3 bits (168), Expect = 4e-12
 Identities = 35/88 (39%), Positives = 50/88 (56%)
 Frame = +1

Query: 208 GARVYIACRDVLKGESAASEIRADTKNSQVLVRKLDLSDTKSIRAFAEGFLTEEKQLHIL 387
           GA V +ACR++ +   A S I  +   ++V    LDL+  +S++ FAE F  +   LH+L
Sbjct: 148 GAHVILACRNMARASEAVSRILEEWHKAKVEAMTLDLALLRSVQHFAEAFKAKNVPLHVL 207

Query: 388 INNAGVMLCPYSKTADGFETHLGVNHLG 471
           + NA     P+S T DG ET   VNHLG
Sbjct: 208 VCNAATFALPWSLTKDGLETTFQVNHLG 235


>ref|XP_371503.3| PREDICTED: similar to short-chain dehydrogenase/reductase 1 [Homo
           sapiens]
          Length = 891

 Score = 63.2 bits (152), Expect = 3e-10
 Identities = 33/94 (35%), Positives = 58/94 (61%), Gaps = 1/94 (1%)
 Frame = +1

Query: 208 GARVYIACRDVLKGESAASEIRADTKNSQVLVRKLDLSDTKSIRAFAEGFLTEEKQLHIL 387
           GA+V + C+    G+ A +EI+A + ++++L+ ++DLS   SIR+FA   L E  ++H+L
Sbjct: 626 GAQVILTCQSRECGQQALAEIQAASNSNRLLLGEVDLSSMTSIRSFARRLLQENPEIHLL 685

Query: 388 INNAGVM-LCPYSKTADGFETHLGVNHLGTGVTT 486
           +NNAGV  + P + T  G +     N++G  + T
Sbjct: 686 VNNAGVSGMIPKTLTPGGLDLTFVTNYVGPFLLT 719


>ref|XP_947127.1| PREDICTED: similar to short-chain dehydrogenase/reductase 1 [Homo
           sapiens]
          Length = 916

 Score = 63.2 bits (152), Expect = 3e-10
 Identities = 33/94 (35%), Positives = 58/94 (61%), Gaps = 1/94 (1%)
 Frame = +1

Query: 208 GARVYIACRDVLKGESAASEIRADTKNSQVLVRKLDLSDTKSIRAFAEGFLTEEKQLHIL 387
           GA+V + C+    G+ A +EI+A + ++++L+ ++DLS   SIR+FA   L E  ++H+L
Sbjct: 651 GAQVILTCQSRECGQQALAEIQAASNSNRLLLGEVDLSSMTSIRSFARRLLQENPEIHLL 710

Query: 388 INNAGVM-LCPYSKTADGFETHLGVNHLGTGVTT 486
           +NNAGV  + P + T  G +     N++G  + T
Sbjct: 711 VNNAGVSGMIPKTLTPGGLDLTFVTNYVGPFLLT 744


>ref|NP_078981.1| hypothetical protein FLJ13639 isoform 2 [Homo sapiens]
          Length = 242

 Score = 53.5 bits (127), Expect = 2e-07
 Identities = 30/81 (37%), Positives = 42/81 (51%)
 Frame = +1

Query: 259 ASEIRADTKNSQVLVRKLDLSDTKSIRAFAEGFLTEEKQLHILINNAGVMLCPYSKTADG 438
           A ++   + +  + +  +DLSD K I  F E F  E K LH+LINNAG M+     T DG
Sbjct: 32  AKQLPLKSPSENIFLHIVDLSDPKQIWKFVENFKQEHK-LHVLINNAGCMVNKRELTEDG 90

Query: 439 FETHLGVNHLGTGVTTYAVHP 501
            E +   N LG  + T  + P
Sbjct: 91  LEKNFAANTLGVYILTTGLIP 111


  Database: RefSeqHP
    Posted date:  Aug 2, 2006 12:57 AM
  Number of letters in database: 17,774,539
  Number of sequences in database:  39,411
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 36,187,331
Number of Sequences: 39411
Number of extensions: 987638
Number of successful extensions: 3700
Number of sequences better than 1.0e-05: 10
Number of HSP's better than  0.0 without gapping: 3349
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3689
length of database: 17,774,539
effective HSP length: 102
effective length of database: 13,754,617
effective search space used: 2833451102
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

Search to RefSeqMP

BLASTX 2.2.10 [Oct-19-2004]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20060611S-059192
         (927 letters)

Database: RefSeqMP 
           45,328 sequences; 21,768,885 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_084293.1| retinol dehydrogenase 12 [Mus musculus]              184   9e-47
Alignment   gi|NP_067532.2| short-chain dehydrogenase/reductase 1 [Mus musc...   145   4e-35
Alignment   gi|NP_076186.1| alcohol dehydrogenase PAN2 [Mus musculus]             94   2e-19
Alignment   gi|NP_780581.1| retinol dehydrogenase 13 (all-trans and 9-cis) ...    92   8e-19
Alignment   gi|NP_899109.1| hypothetical protein LOC70451 [Mus musculus]          79   7e-15
Alignment   gi|NP_001028498.1| dehydrogenase/reductase (SDR family) X chrom...    78   1e-14
Alignment   gi|NP_062519.2| WW-domain oxidoreductase [Mus musculus]               71   1e-12

>ref|NP_084293.1| retinol dehydrogenase 12 [Mus musculus]
          Length = 316

 Score =  184 bits (468), Expect = 9e-47
 Identities = 118/260 (45%), Positives = 136/260 (52%), Gaps = 71/260 (27%)
 Frame = +1

Query: 193 QLHPSGARVYIACRDVLKGESAASEIRA---------------DTKNSQVLVRKLDLSDT 327
           +L   GARVYIACRDVLKGESAASEIRA               DTK+ +    +  L++ 
Sbjct: 58  ELARRGARVYIACRDVLKGESAASEIRADTKNSQVLVRKLDLSDTKSIRAFAERF-LAEE 116

Query: 328 KSIRAFAEGF---------LTEEKQLHILINNAGVMLCPY-------------------- 420
           K +                 T+  + H  +N+ G  L  Y                    
Sbjct: 117 KKLHILINNAGVMMCPYSKTTDGFETHFGVNHLGHFLLTYLLLERLKESAPARVVNLSSI 176

Query: 421 --------------------------SKTADG-FETHLGVNHLGTGVTTYAVHPGIVQSE 519
                                     SK A+  F   L     GTGVT YAVHPG+V SE
Sbjct: 177 AHLIGKIRFHDLQGQKRYCSAFAYGHSKLANLLFTRELAKRLQGTGVTAYAVHPGVVLSE 236

Query: 520 LVRHSFLLCLLWRLFSRFLKTAREGAQTSLHCALAEGLEPLSGKYFSDCKRAWVSPRARN 699
           + R+S+LLCLLWRLFS F K+  +GAQTSLHCALAE LEPLSGKYFSDCKR WVS RARN
Sbjct: 237 ITRNSYLLCLLWRLFSPFFKSTSQGAQTSLHCALAEDLEPLSGKYFSDCKRMWVSSRARN 296

Query: 700 NKTAERLWNVSCELLGIPVE 759
            KTAERLWNVSCELLGI  E
Sbjct: 297 KKTAERLWNVSCELLGIQWE 316


>ref|NP_067532.2| short-chain dehydrogenase/reductase 1 [Mus musculus]
          Length = 316

 Score =  145 bits (367), Expect = 4e-35
 Identities = 72/94 (76%), Positives = 81/94 (86%)
 Frame = +1

Query: 208 GARVYIACRDVLKGESAASEIRADTKNSQVLVRKLDLSDTKSIRAFAEGFLTEEKQLHIL 387
           GARVY+ACRDV KGE AA EI+A T NSQV VRKLDL+DTKSIRAFA+ FL EEK LH+L
Sbjct: 62  GARVYLACRDVDKGELAAREIQAVTGNSQVFVRKLDLADTKSIRAFAKDFLAEEKHLHLL 121

Query: 388 INNAGVMLCPYSKTADGFETHLGVNHLGTGVTTY 489
           INNAGVM+CPYSKTADGFE H+GVNHLG  + T+
Sbjct: 122 INNAGVMMCPYSKTADGFEMHIGVNHLGHFLLTH 155



 Score =  136 bits (342), Expect = 4e-32
 Identities = 70/123 (56%), Positives = 90/123 (73%), Gaps = 1/123 (0%)
 Frame = +1

Query: 394 NAGVMLCPYSKTADG-FETHLGVNHLGTGVTTYAVHPGIVQSELVRHSFLLCLLWRLFSR 570
           +AG+  C +SK A+  F   L     G+GVTTY+VHPG V SEL R+S ++  LW+LF  
Sbjct: 194 SAGLAYC-HSKLANILFTKELAKRLKGSGVTTYSVHPGTVHSELTRYSSIMRWLWQLFFV 252

Query: 571 FLKTAREGAQTSLHCALAEGLEPLSGKYFSDCKRAWVSPRARNNKTAERLWNVSCELLGI 750
           F+KT +EGAQTSL+CAL EGLE LSG +FSDC+ AWVS + RN   A RLW+VSC+LLG+
Sbjct: 253 FIKTPQEGAQTSLYCALTEGLESLSGSHFSDCQLAWVSYQGRNEIIARRLWDVSCDLLGL 312

Query: 751 PVE 759
           PV+
Sbjct: 313 PVD 315


>ref|NP_076186.1| alcohol dehydrogenase PAN2 [Mus musculus]
          Length = 334

 Score = 94.0 bits (232), Expect = 2e-19
 Identities = 47/98 (47%), Positives = 63/98 (64%), Gaps = 10/98 (10%)
 Frame = +1

Query: 208 GARVYIACRDVLKGESAASEIRA----------DTKNSQVLVRKLDLSDTKSIRAFAEGF 357
           GARV + CRD  + E AA ++R           D  + Q++V++LDL+  +S+RAF +  
Sbjct: 68  GARVIMGCRDRARAEEAAGQLRQELCQAGGAGPDGTDGQLVVKELDLASLRSVRAFCQEL 127

Query: 358 LTEEKQLHILINNAGVMLCPYSKTADGFETHLGVNHLG 471
           L EE +L +LINNAGV  CPY+KT DGFE   GVNHLG
Sbjct: 128 LQEEPRLDVLINNAGVFHCPYTKTEDGFEMQFGVNHLG 165



 Score = 79.0 bits (193), Expect = 7e-15
 Identities = 41/98 (41%), Positives = 60/98 (61%), Gaps = 4/98 (4%)
 Frame = +1

Query: 469 GTGVTTYAVHPGIVQSELVRHSFLLCLLWRLFS----RFLKTAREGAQTSLHCALAEGLE 636
           GT VT   +HPGIV++ L RH  +  L   LF+     F KT  EGAQTS++ A +  +E
Sbjct: 235 GTNVTVNVLHPGIVRTNLGRHIHIPLLARPLFNLVSWAFFKTPLEGAQTSIYLACSPDVE 294

Query: 637 PLSGKYFSDCKRAWVSPRARNNKTAERLWNVSCELLGI 750
            +SG+YF DCK   + P+A +   A +LW++S  ++GI
Sbjct: 295 GVSGRYFGDCKEEELLPKAMDESVARKLWDISEVMVGI 332


>ref|NP_780581.1| retinol dehydrogenase 13 (all-trans and 9-cis) [Mus musculus]
          Length = 334

 Score = 92.0 bits (227), Expect = 8e-19
 Identities = 46/93 (49%), Positives = 61/93 (65%)
 Frame = +1

Query: 193 QLHPSGARVYIACRDVLKGESAASEIRADTKNSQVLVRKLDLSDTKSIRAFAEGFLTEEK 372
           +L   G  V +ACRD+ K E AA +IR +T N +V   +LDL+  KSIR FA   + EE+
Sbjct: 57  ELAKRGGNVILACRDMEKCEVAAKDIRGETLNPRVRAERLDLASLKSIREFARKVIKEEE 116

Query: 373 QLHILINNAGVMLCPYSKTADGFETHLGVNHLG 471
           ++ IL+NNA VM CP+  T DGFE   GVN+LG
Sbjct: 117 RVDILVNNAAVMRCPHWTTEDGFEMQFGVNYLG 149



 Score = 69.3 bits (168), Expect = 5e-12
 Identities = 39/100 (39%), Positives = 56/100 (56%), Gaps = 6/100 (6%)
 Frame = +1

Query: 469 GTGVTTYAVHPGIVQSELVRHS------FLLCLLWRLFSRFLKTAREGAQTSLHCALAEG 630
           G+GVT  A+HPG+ ++EL RH+      F   +L   F    K+ +  AQ S + A+AE 
Sbjct: 220 GSGVTVNALHPGVARTELGRHTGMHNSAFSGFMLGPFFWLLFKSPQLAAQPSTYLAVAEE 279

Query: 631 LEPLSGKYFSDCKRAWVSPRARNNKTAERLWNVSCELLGI 750
           LE +SGKYF   +    SP A + + A RLW  S  L+G+
Sbjct: 280 LENVSGKYFDGLREKAPSPEAEDEEVARRLWTESARLVGL 319


>ref|NP_899109.1| hypothetical protein LOC70451 [Mus musculus]
          Length = 260

 Score = 79.0 bits (193), Expect = 7e-15
 Identities = 41/103 (39%), Positives = 66/103 (64%)
 Frame = +1

Query: 193 QLHPSGARVYIACRDVLKGESAASEIRADTKNSQVLVRKLDLSDTKSIRAFAEGFLTEEK 372
           +L   GARV +ACR   +GE+AA ++R ++ N++V+   LDL+   S++AFA  FL+ E 
Sbjct: 55  ELARRGARVVLACRSRERGEAAAFDLRQESGNNEVIFMALDLASLASVQAFATAFLSSEP 114

Query: 373 QLHILINNAGVMLCPYSKTADGFETHLGVNHLGTGVTTYAVHP 501
           +L +LI+NAG+  C   +T + F   L VNH+G  + T+ + P
Sbjct: 115 RLDVLIHNAGISSC--GRTRETFNLLLRVNHVGPFLLTHLLLP 155


>ref|NP_001028498.1| dehydrogenase/reductase (SDR family) X chromosome [Mus musculus]
          Length = 335

 Score = 78.2 bits (191), Expect = 1e-14
 Identities = 44/105 (41%), Positives = 59/105 (56%)
 Frame = +1

Query: 193 QLHPSGARVYIACRDVLKGESAASEIRADTKNSQVLVRKLDLSDTKSIRAFAEGFLTEEK 372
           QL   G  V +A  D  +G+   S IRA+  + +     LDL+   S+R FA  F     
Sbjct: 62  QLARLGMCVVVAGNDEHRGQEVVSSIRAEMGSDRAHFLPLDLASLASVRGFARDFQALGL 121

Query: 373 QLHILINNAGVMLCPYSKTADGFETHLGVNHLGTGVTTYAVHPGI 507
            LH+L+NNAGVML P ++T DGFE HLGVN LG  + T  + P +
Sbjct: 122 PLHLLVNNAGVMLEPRAETEDGFERHLGVNFLGHFLLTLLLLPAL 166


>ref|NP_062519.2| WW-domain oxidoreductase [Mus musculus]
          Length = 414

 Score = 71.2 bits (173), Expect = 1e-12
 Identities = 38/91 (41%), Positives = 60/91 (65%), Gaps = 1/91 (1%)
 Frame = +1

Query: 475 GVTTYAVHPG-IVQSELVRHSFLLCLLWRLFSRFLKTAREGAQTSLHCALAEGLEPLSGK 651
           GVT+ AVHPG ++ S + R+S++  LL+ L   F K+ ++GA T+++CA+A  LE L G 
Sbjct: 315 GVTSNAVHPGNMMYSAIHRNSWVYKLLFTLARPFTKSMQQGAATTVYCAVAPELEGLGGM 374

Query: 652 YFSDCKRAWVSPRARNNKTAERLWNVSCELL 744
           YF++C R   S  A++ +TA  LW +S  L+
Sbjct: 375 YFNNCCRCLPSEEAQSEETARALWELSERLI 405



 Score = 70.5 bits (171), Expect = 2e-12
 Identities = 35/88 (39%), Positives = 50/88 (56%)
 Frame = +1

Query: 208 GARVYIACRDVLKGESAASEIRADTKNSQVLVRKLDLSDTKSIRAFAEGFLTEEKQLHIL 387
           GA V +ACR++ +   A S I  +   ++V    LDL+  +S++ FAE F  +   LH+L
Sbjct: 148 GAHVILACRNLSRASEAVSRILEEWHKAKVEAMTLDLAVLRSVQHFAEAFKAKNVSLHVL 207

Query: 388 INNAGVMLCPYSKTADGFETHLGVNHLG 471
           + NAG    P+  T DG ET   VNHLG
Sbjct: 208 VCNAGTFALPWGLTKDGLETTFQVNHLG 235


  Database: RefSeqMP
    Posted date:  Aug 2, 2006 12:58 AM
  Number of letters in database: 21,768,885
  Number of sequences in database:  45,328
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 42,512,764
Number of Sequences: 45328
Number of extensions: 1111191
Number of successful extensions: 3794
Number of sequences better than 1.0e-05: 7
Number of HSP's better than  0.0 without gapping: 3396
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3782
length of database: 21,768,885
effective HSP length: 103
effective length of database: 17,100,101
effective search space used: 3505520705
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)