BLASTX 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= 20060611S-059192 (927 letters) Database: RefSeqSP 1040 sequences; 434,620 total letters Searching...done ***** No hits found ****** Database: RefSeqSP Posted date: Aug 1, 2006 7:14 PM Number of letters in database: 434,620 Number of sequences in database: 1040 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 842,452 Number of Sequences: 1040 Number of extensions: 21567 Number of successful extensions: 62 Number of sequences better than 1.0e-05: 0 Number of HSP's better than 0.0 without gapping: 57 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 62 length of database: 434,620 effective HSP length: 76 effective length of database: 355,580 effective search space used: 82494560 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
Search to RefSeqBP
BLASTX 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= 20060611S-059192 (927 letters) Database: RefSeqBP 33,508 sequences; 16,112,626 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Alignment gi|NP_899207.1| double substrate-specificity short chain dehydr... 186 2e-47 Alignment gi|XP_582373.2| PREDICTED: similar to Retinol dehydrogenase 11 ... 159 4e-39 Alignment gi|XP_870721.1| PREDICTED: similar to Retinol dehydrogenase 11 ... 144 7e-35 Alignment gi|XP_584629.2| PREDICTED: similar to Retinol dehydrogenase 13,... 96 5e-20 Alignment gi|XP_592820.2| PREDICTED: similar to retinol dehydrogenase 11 ... 92 7e-19 Alignment gi|XP_582319.2| PREDICTED: similar to retinol dehydrogenase 14 ... 87 2e-17 Alignment gi|XP_584642.2| PREDICTED: similar to retinol dehydrogenase 11 ... 73 4e-13 Alignment gi|XP_584810.2| PREDICTED: similar to retinol dehydrogenase 13 ... 70 2e-12 Alignment gi|XP_583859.2| PREDICTED: similar to short chain dehydrogenase... 67 3e-11 Alignment gi|XP_591168.2| PREDICTED: similar to dehydrogenase/reductase (... 64 1e-10 >ref|NP_899207.1| double substrate-specificity short chain dehydrogenase/reductase 2 [Bos taurus] Length = 316 Score = 186 bits (472), Expect = 2e-47 Identities = 95/120 (79%), Positives = 100/120 (83%), Gaps = 1/120 (0%) Frame = +1 Query: 394 NAGVMLCPYSKTADG-FETHLGVNHLGTGVTTYAVHPGIVQSELVRHSFLLCLLWRLFSR 570 N G C +SK A+ F L GTGVTTYAVHPGIV+S+LVRHSFLLCLLWRLFS Sbjct: 195 NLGFAYC-HSKLANVLFTRELAKRLKGTGVTTYAVHPGIVRSKLVRHSFLLCLLWRLFSP 253 Query: 571 FLKTAREGAQTSLHCALAEGLEPLSGKYFSDCKRAWVSPRARNNKTAERLWNVSCELLGI 750 FLKT EGAQTSLHCALAEGLEPLSGKYFSDCK+ WVSPRARNNKTAERLWNVSCELLGI Sbjct: 254 FLKTTWEGAQTSLHCALAEGLEPLSGKYFSDCKKTWVSPRARNNKTAERLWNVSCELLGI 313 Score = 171 bits (434), Expect = 6e-43 Identities = 87/99 (87%), Positives = 91/99 (91%) Frame = +1 Query: 193 QLHPSGARVYIACRDVLKGESAASEIRADTKNSQVLVRKLDLSDTKSIRAFAEGFLTEEK 372 +L GARVYIACRDVLKGESAASEI+ADTKNSQVLVRKLDLSDTKSIRAFAEGFL EEK Sbjct: 58 ELARRGARVYIACRDVLKGESAASEIQADTKNSQVLVRKLDLSDTKSIRAFAEGFLAEEK 117 Query: 373 QLHILINNAGVMLCPYSKTADGFETHLGVNHLGTGVTTY 489 QLHILINNAGVMLCPYSKTADGFETHL VNHLG + T+ Sbjct: 118 QLHILINNAGVMLCPYSKTADGFETHLAVNHLGHFLLTH 156 >ref|XP_582373.2| PREDICTED: similar to Retinol dehydrogenase 11 (Retinal reductase 1) (RalR1) (Prostate short-chain dehydrogenase/reductase 1) (Androgen-regulated short-chain dehydrogenase/reductase 1) (HCV core-binding protein HCBP12) isoform 1 [Bos taurus] Length = 308 Score = 159 bits (401), Expect = 4e-39 Identities = 106/254 (41%), Positives = 130/254 (51%), Gaps = 65/254 (25%) Frame = +1 Query: 193 QLHPSGARVYIACRDVLKGESAASEIRADTKNSQVLVRKLD--------------LSDTK 330 +L GARVY+ACRDV GE A EI+ T N QVLVRKLD L D K Sbjct: 34 ELARRGARVYLACRDVQNGELVAREIQMMTGNQQVLVRKLDLADTKSIRAFAKRFLEDHK 93 Query: 331 SIR----------------AFAEGFLTEEKQLHILINN---------------------- 396 I A G+L H+L+ Sbjct: 94 YIHLINSVGFPGSSAGKDSACNTGYLGHFLLTHLLLEKLEESAPSRVVNVSSLAHLLGRI 153 Query: 397 ------------AGVMLCPYSKTADG-FETHLGVNHLGTGVTTYAVHPGIVQSELVRHSF 537 +G+ C +SK A+ F L G+GVT Y+VHPG V SELVRHS Sbjct: 154 HFHNLQGEKFYQSGLAYC-HSKLANILFTQELARRLKGSGVTVYSVHPGTVNSELVRHSA 212 Query: 538 LLCLLWRLFSRFLKTAREGAQTSLHCALAEGLEPLSGKYFSDCKRAWVSPRARNNKTAER 717 L+ +W +FS F+KT ++GAQTSL+CAL EGLE LSG +FSDC AWVS +ARN A R Sbjct: 213 LMRWIWWIFSFFIKTPQQGAQTSLYCALTEGLEVLSGNHFSDCHVAWVSAQARNETVARR 272 Query: 718 LWNVSCELLGIPVE 759 LW+VSC+LLGIPV+ Sbjct: 273 LWDVSCDLLGIPVD 286 >ref|XP_870721.1| PREDICTED: similar to Retinol dehydrogenase 11 (Retinal reductase 1) (RalR1) (Prostate short-chain dehydrogenase/reductase 1) (Androgen-regulated short-chain dehydrogenase/reductase 1) (HCV core-binding protein HCBP12) isoform 2 [Bos taurus] Length = 314 Score = 144 bits (364), Expect = 7e-35 Identities = 100/261 (38%), Positives = 128/261 (49%), Gaps = 72/261 (27%) Frame = +1 Query: 193 QLHPSGARVYIACRDVLKGESAASEIR---------------ADTKNSQVLVRKLDLSDT 327 +L GARVY+ACRDV GE A EI+ ADTK+ + ++ L D Sbjct: 34 ELARRGARVYLACRDVQNGELVAREIQMMTGNQQVLVRKLDLADTKSIRAFAKRF-LEDH 92 Query: 328 KSIR----------------------AFAEGFLTEEKQLHILINN--------------- 396 K I A G+L H+L+ Sbjct: 93 KYIHLINSSPHFLICGFPGSSAGKDSACNTGYLGHFLLTHLLLEKLEESAPSRVVNVSSL 152 Query: 397 -------------------AGVMLCPYSKTADG-FETHLGVNHLGTGVTTYAVHPGIVQS 516 +G+ C +SK A+ F L G+GVT Y+VHPG V S Sbjct: 153 AHLLGRIHFHNLQGEKFYQSGLAYC-HSKLANILFTQELARRLKGSGVTVYSVHPGTVNS 211 Query: 517 ELVRHSFLLCLLWRLFSRFLKTAREGAQTSLHCALAEGLEPLSGKYFSDCKRAWVSPRAR 696 ELVRHS L+ +W +FS F+KT ++GAQTSL+CAL EGLE LSG +FSDC AWVS +AR Sbjct: 212 ELVRHSALMRWIWWIFSFFIKTPQQGAQTSLYCALTEGLEVLSGNHFSDCHVAWVSAQAR 271 Query: 697 NNKTAERLWNVSCELLGIPVE 759 N A RLW+VSC+LLGIPV+ Sbjct: 272 NETVARRLWDVSCDLLGIPVD 292 >ref|XP_584629.2| PREDICTED: similar to Retinol dehydrogenase 13, partial [Bos taurus] Length = 148 Score = 95.5 bits (236), Expect = 5e-20 Identities = 49/92 (53%), Positives = 61/92 (66%) Frame = +1 Query: 193 QLHPSGARVYIACRDVLKGESAASEIRADTKNSQVLVRKLDLSDTKSIRAFAEGFLTEEK 372 +L G + +ACRD+ K E+AA EIR +T N +V R LDL+ KSIR FA EE+ Sbjct: 57 ELAKRGGNIILACRDMEKCEAAAKEIRGETLNHRVNARHLDLASLKSIREFAAKVTEEEE 116 Query: 373 QLHILINNAGVMLCPYSKTADGFETHLGVNHL 468 +HILINNA VM CP+ T DGFE LGVN+L Sbjct: 117 HVHILINNAAVMRCPHWTTEDGFEMQLGVNYL 148 >ref|XP_592820.2| PREDICTED: similar to retinol dehydrogenase 11 (predicted) [Bos taurus] Length = 377 Score = 91.7 bits (226), Expect = 7e-19 Identities = 53/107 (49%), Positives = 66/107 (61%), Gaps = 3/107 (2%) Frame = +1 Query: 439 FETHLGVNHLGTGVTTYAVHPGIVQSEL-VRH--SFLLCLLWRLFSRFLKTAREGAQTSL 609 F L GTGVT YA HPG V SEL +RH +L LL L L+ R GAQT L Sbjct: 207 FARELATQLEGTGVTCYAAHPGPVNSELFLRHVPGWLRPLLRPLAWLVLRAPRGGAQTPL 266 Query: 610 HCALAEGLEPLSGKYFSDCKRAWVSPRARNNKTAERLWNVSCELLGI 750 +CAL EG+EPLSG+YF++C V P AR+++ A RLW S +L G+ Sbjct: 267 YCALQEGIEPLSGRYFANCHVEEVPPAARDDRAAHRLWEASRKLAGL 313 Score = 81.6 bits (200), Expect = 8e-16 Identities = 44/108 (40%), Positives = 68/108 (62%) Frame = +1 Query: 193 QLHPSGARVYIACRDVLKGESAASEIRADTKNSQVLVRKLDLSDTKSIRAFAEGFLTEEK 372 +L GARV +ACR +GE+AA ++R ++ N++V+ LDL+ S+RAFA FL+ E Sbjct: 55 ELARRGARVVLACRSRERGEAAAFDLRQESGNNEVIFMALDLASLASVRAFATAFLSSEP 114 Query: 373 QLHILINNAGVMLCPYSKTADGFETHLGVNHLGTGVTTYAVHPGIVQS 516 +L ILI+NAG+ C +T + F L VNH+G + T+ + P + S Sbjct: 115 RLDILIHNAGISSC--GRTREPFNLLLRVNHIGPFLLTHLLLPRLKTS 160 >ref|XP_582319.2| PREDICTED: similar to retinol dehydrogenase 14 (all-trans and 9-cis) [Bos taurus] Length = 420 Score = 87.0 bits (214), Expect = 2e-17 Identities = 46/101 (45%), Positives = 62/101 (61%), Gaps = 13/101 (12%) Frame = +1 Query: 208 GARVYIACRDVLKGESAASEIRADT---------KNS----QVLVRKLDLSDTKSIRAFA 348 GARV + CRD + E AA ++R + NS +++V++LDL+ S+R+F Sbjct: 151 GARVIMGCRDRERAEEAAGQLRREVCPAGGPDSGPNSGGAGELVVKELDLASLSSVRSFC 210 Query: 349 EGFLTEEKQLHILINNAGVMLCPYSKTADGFETHLGVNHLG 471 + L EE +L +LINNAGV CPY KT DGFE GVNHLG Sbjct: 211 QEMLQEEPRLDVLINNAGVFQCPYMKTEDGFEMQFGVNHLG 251 Score = 78.2 bits (191), Expect = 9e-15 Identities = 40/98 (40%), Positives = 61/98 (62%), Gaps = 4/98 (4%) Frame = +1 Query: 469 GTGVTTYAVHPGIVQSELVRHSFLLCLLWRLFS----RFLKTAREGAQTSLHCALAEGLE 636 GT VT +HPGIV++ L RH + L+ LF+ F KT EGAQT+++ A + +E Sbjct: 321 GTSVTVNVLHPGIVRTNLGRHIHIPLLVRPLFNLVSWAFFKTPEEGAQTAVYLASSPEVE 380 Query: 637 PLSGKYFSDCKRAWVSPRARNNKTAERLWNVSCELLGI 750 +SG+YF DCK + P+A + A +LW++S ++GI Sbjct: 381 GVSGRYFGDCKEEELLPKAMDESVARKLWDISEVMVGI 418 >ref|XP_584642.2| PREDICTED: similar to retinol dehydrogenase 11 (predicted) [Bos taurus] Length = 330 Score = 72.8 bits (177), Expect = 4e-13 Identities = 37/98 (37%), Positives = 62/98 (63%) Frame = +1 Query: 193 QLHPSGARVYIACRDVLKGESAASEIRADTKNSQVLVRKLDLSDTKSIRAFAEGFLTEEK 372 +L GARV +ACR +G+ A +EI+A +K++++L+ ++DLS SIR+FA+ L E Sbjct: 68 ELAHRGARVILACRSRERGQQALAEIQATSKSNRLLLGEVDLSSMASIRSFAQRLLQECP 127 Query: 373 QLHILINNAGVMLCPYSKTADGFETHLGVNHLGTGVTT 486 ++H+L+NNA V P + T +G + N+ G + T Sbjct: 128 EIHLLVNNAAVCGFPTTLTPEGLDLTFATNYTGPFLLT 165 Score = 60.1 bits (144), Expect = 2e-09 Identities = 35/96 (36%), Positives = 57/96 (59%), Gaps = 2/96 (2%) Frame = +1 Query: 469 GTGVTTYAVHPGIVQSELVRH-SFLLCLLWRLFSRFLKTAREGAQTSLHCALAEGLEPLS 645 GTGVT +V PG+V +++++H S+ L+ L S F K +++GA L+ +LA+ L+ +S Sbjct: 231 GTGVTVNSVDPGVVYTKIMKHFSWSYRFLFWLLSFFFKDSKQGAVPVLYLSLAKELDGIS 290 Query: 646 GKYF-SDCKRAWVSPRARNNKTAERLWNVSCELLGI 750 GK+F S C A++ A+ LWN S L + Sbjct: 291 GKHFSSSCVITLPPEAAQDPHVAQSLWNTSVRLTNL 326 >ref|XP_584810.2| PREDICTED: similar to retinol dehydrogenase 13 (all-trans and 9-cis) [Bos taurus] Length = 223 Score = 70.1 bits (170), Expect = 2e-12 Identities = 40/100 (40%), Positives = 58/100 (58%), Gaps = 6/100 (6%) Frame = +1 Query: 469 GTGVTTYAVHPGIVQSELVRHS------FLLCLLWRLFSRFLKTAREGAQTSLHCALAEG 630 GTGVT A+HPG+ ++EL RH+ F L +F +K+ AQ S++ A+AE Sbjct: 108 GTGVTVNALHPGVARTELGRHTGMHSSAFSSFTLGPIFWLLVKSPELAAQPSVYLAVAEE 167 Query: 631 LEPLSGKYFSDCKRAWVSPRARNNKTAERLWNVSCELLGI 750 LE +SGKYF K +P A + + A+RLW S L+G+ Sbjct: 168 LEGVSGKYFDVLKEKPPAPEAEDEEVAKRLWAESVRLVGL 207 >ref|XP_583859.2| PREDICTED: similar to short chain dehydrogenase/reductase [Bos taurus] Length = 317 Score = 66.6 bits (161), Expect = 3e-11 Identities = 38/98 (38%), Positives = 54/98 (55%) Frame = +1 Query: 208 GARVYIACRDVLKGESAASEIRADTKNSQVLVRKLDLSDTKSIRAFAEGFLTEEKQLHIL 387 G V++ CRD + E A +EI ++ N + + +DLS KS+ F E F +E L++L Sbjct: 64 GGTVHLVCRDHSRAEGAKAEIIRESGNQNIFLHIVDLSLPKSVWKFVENF-KQEHTLNVL 122 Query: 388 INNAGVMLCPYSKTADGFETHLGVNHLGTGVTTYAVHP 501 INNAG M+ T DG E + N LG V T A+ P Sbjct: 123 INNAGCMVNKRELTEDGLEKNFATNTLGVYVLTTALIP 160 >ref|XP_591168.2| PREDICTED: similar to dehydrogenase/reductase (SDR family) X-linked [Bos taurus] Length = 251 Score = 64.3 bits (155), Expect = 1e-10 Identities = 32/74 (43%), Positives = 45/74 (60%) Frame = +1 Query: 313 DLSDTKSIRAFAEGFLTEEKQLHILINNAGVMLCPYSKTADGFETHLGVNHLGTGVTTYA 492 DL+ +SIR F + F ++ LH+L+NNAGVM+ P T DGFE H GVN+LG + T Sbjct: 11 DLASMRSIREFVQTFKMKKLPLHVLVNNAGVMMVPQRTTEDGFEEHFGVNYLGHFLLTNL 70 Query: 493 VHPGIVQSELVRHS 534 + + +S HS Sbjct: 71 LLDTLQESGAPGHS 84 Score = 48.5 bits (114), Expect = 7e-06 Identities = 34/101 (33%), Positives = 48/101 (47%), Gaps = 7/101 (6%) Frame = +1 Query: 469 GTGVTTYAVHPGIVQSELVRHSFLLCLLW--RLFSRFL-----KTAREGAQTSLHCALAE 627 G VT PG+V ++L R+ F W RL + L KT EGA TS++ A+ Sbjct: 139 GMPVTASVADPGVVDTDLYRYVF-----WGTRLVKKLLGWWVFKTPDEGAWTSVYAAVTP 193 Query: 628 GLEPLSGKYFSDCKRAWVSPRARNNKTAERLWNVSCELLGI 750 LE L G+Y + K + + +LW SC+L GI Sbjct: 194 ALEGLGGRYLYNEKETRSLEATYDPELQRQLWARSCQLTGI 234 Database: RefSeqBP Posted date: Aug 1, 2006 7:14 PM Number of letters in database: 16,112,626 Number of sequences in database: 33,508 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 31,758,861 Number of Sequences: 33508 Number of extensions: 836258 Number of successful extensions: 2857 Number of sequences better than 1.0e-05: 10 Number of HSP's better than 0.0 without gapping: 2566 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2849 length of database: 16,112,626 effective HSP length: 101 effective length of database: 12,728,318 effective search space used: 2634761826 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
Search to RefSeqCP
BLASTX 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= 20060611S-059192 (927 letters) Database: RefSeqCP 33,732 sequences; 19,266,565 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Alignment gi|XP_547866.2| PREDICTED: similar to retinol dehydrogenase 12 ... 187 2e-47 Alignment gi|XP_854354.1| PREDICTED: similar to Retinol dehydrogenase 11 ... 147 1e-35 Alignment gi|XP_854127.1| PREDICTED: similar to Retinol dehydrogenase 13 ... 99 8e-21 Alignment gi|XP_857582.1| PREDICTED: similar to retinol dehydrogenase 14 ... 94 2e-19 Alignment gi|XP_540096.2| PREDICTED: similar to retinol dehydrogenase 14 ... 92 9e-19 Alignment gi|XP_548293.2| PREDICTED: similar to retinol dehydrogenase 11 ... 91 2e-18 Alignment gi|XP_533000.2| PREDICTED: similar to Retinol dehydrogenase 12 ... 70 4e-12 Alignment gi|XP_852623.1| PREDICTED: similar to WW domain-containing oxid... 70 4e-12 Alignment gi|XP_852222.1| PREDICTED: similar to dehydrogenase/reductase (... 68 1e-11 >ref|XP_547866.2| PREDICTED: similar to retinol dehydrogenase 12 (all-trans and 9-cis) [Canis familiaris] Length = 303 Score = 187 bits (474), Expect = 2e-47 Identities = 89/104 (85%), Positives = 94/104 (90%) Frame = +1 Query: 439 FETHLGVNHLGTGVTTYAVHPGIVQSELVRHSFLLCLLWRLFSRFLKTAREGAQTSLHCA 618 F L GTGVTTYAVHPG+V SELVRHSFLLCLLWR+FS F+K+AREGAQTSLHCA Sbjct: 197 FTRELAKRLQGTGVTTYAVHPGVVSSELVRHSFLLCLLWRIFSPFVKSAREGAQTSLHCA 256 Query: 619 LAEGLEPLSGKYFSDCKRAWVSPRARNNKTAERLWNVSCELLGI 750 LAEGLEPLSGKYFSDCKRAWVSPRAR+NKTAERLWNVSCELLGI Sbjct: 257 LAEGLEPLSGKYFSDCKRAWVSPRARDNKTAERLWNVSCELLGI 300 Score = 175 bits (443), Expect = 6e-44 Identities = 90/112 (80%), Positives = 97/112 (86%) Frame = +1 Query: 193 QLHPSGARVYIACRDVLKGESAASEIRADTKNSQVLVRKLDLSDTKSIRAFAEGFLTEEK 372 +L GARVYIACRDVLKGESAASEIRADTKNSQVLVRKLDLSDTKSIRAFAEGFL EEK Sbjct: 45 ELARRGARVYIACRDVLKGESAASEIRADTKNSQVLVRKLDLSDTKSIRAFAEGFLAEEK 104 Query: 373 QLHILINNAGVMLCPYSKTADGFETHLGVNHLGTGVTTYAVHPGIVQSELVR 528 QLHILINNAGVM+CPYSKTADGFETHLGVNHLG + T+ + + +S R Sbjct: 105 QLHILINNAGVMMCPYSKTADGFETHLGVNHLGHFLLTHLLLERLKESTPAR 156 >ref|XP_854354.1| PREDICTED: similar to Retinol dehydrogenase 11 (Retinal reductase 1) (RalR1) (Prostate short-chain dehydrogenase/reductase 1) (Androgen-regulated short-chain dehydrogenase/reductase 1) (HCV core-binding protein HCBP12) [Canis familiaris] Length = 337 Score = 147 bits (371), Expect = 1e-35 Identities = 72/99 (72%), Positives = 82/99 (82%) Frame = +1 Query: 193 QLHPSGARVYIACRDVLKGESAASEIRADTKNSQVLVRKLDLSDTKSIRAFAEGFLTEEK 372 +L GARVY+ACRDVLKGE A EI+ T N QVLVRKLDL+DTKSIRAFA+GFL EEK Sbjct: 79 ELAQRGARVYLACRDVLKGELVAREIQTMTGNKQVLVRKLDLADTKSIRAFAKGFLAEEK 138 Query: 373 QLHILINNAGVMLCPYSKTADGFETHLGVNHLGTGVTTY 489 LHILINNAGVM+CPY+KT DGFE H+GVNHLG + T+ Sbjct: 139 HLHILINNAGVMMCPYTKTVDGFEMHMGVNHLGHFLLTH 177 Score = 137 bits (345), Expect = 1e-32 Identities = 70/123 (56%), Positives = 90/123 (73%), Gaps = 1/123 (0%) Frame = +1 Query: 394 NAGVMLCPYSKTADG-FETHLGVNHLGTGVTTYAVHPGIVQSELVRHSFLLCLLWRLFSR 570 N+G+ C +SK A+ F L G+G+T Y+VHPG V+SELVRHS + +W LFS Sbjct: 216 NSGLAYC-HSKLANILFTQELARRLKGSGITAYSVHPGTVKSELVRHSPFMKWMWWLFSF 274 Query: 571 FLKTAREGAQTSLHCALAEGLEPLSGKYFSDCKRAWVSPRARNNKTAERLWNVSCELLGI 750 F+KT ++GAQTSL+CA+ EGLE LSG +FSDC AWVS +ARN A RLW+VSC+LLGI Sbjct: 275 FIKTPQQGAQTSLYCAITEGLEVLSGHHFSDCSVAWVSAQARNETIARRLWDVSCDLLGI 334 Query: 751 PVE 759 PV+ Sbjct: 335 PVD 337 >ref|XP_854127.1| PREDICTED: similar to Retinol dehydrogenase 13 [Canis familiaris] Length = 334 Score = 98.6 bits (244), Expect = 8e-21 Identities = 49/93 (52%), Positives = 62/93 (66%) Frame = +1 Query: 193 QLHPSGARVYIACRDVLKGESAASEIRADTKNSQVLVRKLDLSDTKSIRAFAEGFLTEEK 372 +L G + +ACRD+ K E+AA EIR +T N +V LDL+ KSIR FA + EE+ Sbjct: 57 ELARRGGNIILACRDMEKCEAAAKEIRGETLNHRVSAWHLDLASLKSIREFAAKIIEEEE 116 Query: 373 QLHILINNAGVMLCPYSKTADGFETHLGVNHLG 471 Q+HIL+NNA VM CP+ T DGFE GVNHLG Sbjct: 117 QVHILVNNAAVMRCPHWTTKDGFEMQFGVNHLG 149 Score = 71.6 bits (174), Expect = 1e-12 Identities = 40/100 (40%), Positives = 58/100 (58%), Gaps = 6/100 (6%) Frame = +1 Query: 469 GTGVTTYAVHPGIVQSELVRHS------FLLCLLWRLFSRFLKTAREGAQTSLHCALAEG 630 GTGVT A+HPG+ ++EL RH+ F L +F +K+ + AQ S + A+AE Sbjct: 220 GTGVTVNALHPGVARTELGRHTGMHSSAFSSFTLGPIFWLLVKSPQLAAQPSTYLAVAEE 279 Query: 631 LEPLSGKYFSDCKRAWVSPRARNNKTAERLWNVSCELLGI 750 LE +SGKYF K +P A + + A+RLW S L+G+ Sbjct: 280 LEGVSGKYFDGLKEKAPAPEAEDEEVAQRLWAESARLVGL 319 >ref|XP_857582.1| PREDICTED: similar to retinol dehydrogenase 14 (all-trans and 9-cis) isoform 4 [Canis familiaris] Length = 307 Score = 94.0 bits (232), Expect = 2e-19 Identities = 72/239 (30%), Positives = 111/239 (46%), Gaps = 58/239 (24%) Frame = +1 Query: 208 GARVYIACRDVLKGESAASEIRADTKNS-------------QVLVRKLDLSDTKSIRAFA 348 GARV + CRD + E AA ++R + + + +++VR+LDL+ +S+RAF Sbjct: 67 GARVIMGCRDRARAEEAAGQLRRELRQAGGREPGSDVGAAGELVVRELDLASLRSVRAFC 126 Query: 349 EG-----------FLTEEKQLHILINNAGVMLCP-------------------------- 417 + FL L +L N+A + Sbjct: 127 QEVLQFGVNHLGHFLLTNLLLGLLKNSAPSRIVVVSSKLYKYGDINFEDLNSEQSYNKSF 186 Query: 418 -YSKTADG---FETHLGVNHLGTGVTTYAVHPGIVQSELVRHSFLLCLLWRLFS----RF 573 YS++ F L GT VT +HPGIV++ L RH + L+ LF+ F Sbjct: 187 CYSRSKLANILFTRELARRLEGTNVTVNVLHPGIVRTNLGRHIHIPLLVRPLFNLVSWAF 246 Query: 574 LKTAREGAQTSLHCALAEGLEPLSGKYFSDCKRAWVSPRARNNKTAERLWNVSCELLGI 750 KT EGAQTS++ A + +E +SGKYF DCK + P+A + A +LW++S ++GI Sbjct: 247 FKTPVEGAQTSVYLASSPEVEGVSGKYFGDCKEEELLPKAMDESVARKLWDISEVMVGI 305 >ref|XP_540096.2| PREDICTED: similar to retinol dehydrogenase 14 (all-trans and 9-cis) isoform 1 [Canis familiaris] Length = 336 Score = 91.7 bits (226), Expect = 9e-19 Identities = 45/101 (44%), Positives = 63/101 (62%), Gaps = 13/101 (12%) Frame = +1 Query: 208 GARVYIACRDVLKGESAASEIRADTKNS-------------QVLVRKLDLSDTKSIRAFA 348 GARV + CRD + E AA ++R + + + +++VR+LDL+ +S+RAF Sbjct: 67 GARVIMGCRDRARAEEAAGQLRRELRQAGGREPGSDVGAAGELVVRELDLASLRSVRAFC 126 Query: 349 EGFLTEEKQLHILINNAGVMLCPYSKTADGFETHLGVNHLG 471 + L EE +L +LINNAG+ CPY KT DGFE GVNHLG Sbjct: 127 QEVLQEEPRLDVLINNAGIFQCPYMKTEDGFEMQFGVNHLG 167 Score = 79.3 bits (194), Expect = 5e-15 Identities = 42/98 (42%), Positives = 61/98 (62%), Gaps = 4/98 (4%) Frame = +1 Query: 469 GTGVTTYAVHPGIVQSELVRHSFLLCLLWRLFS----RFLKTAREGAQTSLHCALAEGLE 636 GT VT +HPGIV++ L RH + L+ LF+ F KT EGAQTS++ A + +E Sbjct: 237 GTNVTVNVLHPGIVRTNLGRHIHIPLLVRPLFNLVSWAFFKTPVEGAQTSVYLASSPEVE 296 Query: 637 PLSGKYFSDCKRAWVSPRARNNKTAERLWNVSCELLGI 750 +SGKYF DCK + P+A + A +LW++S ++GI Sbjct: 297 GVSGKYFGDCKEEELLPKAMDESVARKLWDISEVMVGI 334 >ref|XP_548293.2| PREDICTED: similar to retinol dehydrogenase 11 (predicted) [Canis familiaris] Length = 377 Score = 90.5 bits (223), Expect = 2e-18 Identities = 52/107 (48%), Positives = 65/107 (60%), Gaps = 3/107 (2%) Frame = +1 Query: 439 FETHLGVNHLGTGVTTYAVHPGIVQSEL-VRH--SFLLCLLWRLFSRFLKTAREGAQTSL 609 F L GTGVT YA HPG V SEL +RH +L LL L L+ R GAQT L Sbjct: 207 FARELATQLEGTGVTCYAAHPGPVNSELFLRHVPGWLCPLLRPLAWLMLRAPRGGAQTPL 266 Query: 610 HCALAEGLEPLSGKYFSDCKRAWVSPRARNNKTAERLWNVSCELLGI 750 +CAL EG+EPLSG+YF++C V P AR+++ A +LW S L G+ Sbjct: 267 YCALQEGIEPLSGRYFANCHVEEVPPAARDDRAAHQLWEASKRLAGL 313 Score = 79.7 bits (195), Expect = 4e-15 Identities = 43/103 (41%), Positives = 65/103 (63%) Frame = +1 Query: 193 QLHPSGARVYIACRDVLKGESAASEIRADTKNSQVLVRKLDLSDTKSIRAFAEGFLTEEK 372 +L GARV +ACR +GE+AA ++R ++ N++V+ LDL+ S+RAFA FL+ E Sbjct: 55 ELARRGARVVLACRSRERGEAAAFDLRQESGNNEVIFMALDLASLASVRAFATAFLSSEP 114 Query: 373 QLHILINNAGVMLCPYSKTADGFETHLGVNHLGTGVTTYAVHP 501 +L ILI+NAG+ C +T F L VNH+G + T+ + P Sbjct: 115 RLDILIHNAGISSC--GRTHKPFNLLLRVNHIGPFLLTHLLLP 155 >ref|XP_533000.2| PREDICTED: similar to Retinol dehydrogenase 12 [Canis familiaris] Length = 596 Score = 69.7 bits (169), Expect = 4e-12 Identities = 35/98 (35%), Positives = 60/98 (61%) Frame = +1 Query: 193 QLHPSGARVYIACRDVLKGESAASEIRADTKNSQVLVRKLDLSDTKSIRAFAEGFLTEEK 372 +L GARV +ACR+ +G+ A +EI+ +K + +L+ ++DLS SIR+FA L E Sbjct: 334 ELARRGARVILACRNWERGQKALAEIQVASKGTCLLLGQVDLSSMASIRSFARWLLQEYP 393 Query: 373 QLHILINNAGVMLCPYSKTADGFETHLGVNHLGTGVTT 486 ++H+L+NNA + P + T +G + N++G + T Sbjct: 394 EIHLLVNNAAISGFPKTLTPEGLDLTFATNYVGPFLLT 431 Score = 65.1 bits (157), Expect = 9e-11 Identities = 37/96 (38%), Positives = 60/96 (62%), Gaps = 2/96 (2%) Frame = +1 Query: 469 GTGVTTYAVHPGIVQSELVR-HSFLLCLLWRLFSRFLKTAREGAQTSLHCALAEGLEPLS 645 GTGVT +V PG+V +E+++ + +L L+ LFS F K ++GA L+ +LA+ L+ +S Sbjct: 497 GTGVTVNSVDPGVVYTEIMKPYPWLYRFLFWLFSFFCKDVKQGAIPVLYLSLAKELDGVS 556 Query: 646 GKYF-SDCKRAWVSPRARNNKTAERLWNVSCELLGI 750 GKYF S C + A++ + A+ LWN S +L + Sbjct: 557 GKYFSSSCMITLPTEAAQDPQVAQSLWNASVQLTNL 592 >ref|XP_852623.1| PREDICTED: similar to WW domain-containing oxidoreductase isoform 1 [Canis familiaris] Length = 383 Score = 69.7 bits (169), Expect = 4e-12 Identities = 34/88 (38%), Positives = 51/88 (57%) Frame = +1 Query: 208 GARVYIACRDVLKGESAASEIRADTKNSQVLVRKLDLSDTKSIRAFAEGFLTEEKQLHIL 387 GA V +ACR++ + A S+I + ++V LDL+ +S++ FA+ F + LH+L Sbjct: 148 GAHVILACRNMTRANEAVSQILGEWHKAKVEAMTLDLALLRSVQHFAQAFKAKNVSLHVL 207 Query: 388 INNAGVMLCPYSKTADGFETHLGVNHLG 471 + NA P+S T DG ET VNHLG Sbjct: 208 VCNAAAFALPWSLTKDGLETTFQVNHLG 235 >ref|XP_852222.1| PREDICTED: similar to dehydrogenase/reductase (SDR family) X-linked [Canis familiaris] Length = 387 Score = 67.8 bits (164), Expect = 1e-11 Identities = 34/88 (38%), Positives = 50/88 (56%) Frame = +1 Query: 208 GARVYIACRDVLKGESAASEIRADTKNSQVLVRKLDLSDTKSIRAFAEGFLTEEKQLHIL 387 G V +A + +I+ +T N +V DL+ +SIR F + F ++ LH+L Sbjct: 119 GMHVILAGNNDSSAPDVVRKIQEETLNDKVEFLYCDLASLRSIRQFVQKFKKKKIPLHVL 178 Query: 388 INNAGVMLCPYSKTADGFETHLGVNHLG 471 +NNAGVM+ P T DGFE H G+N+LG Sbjct: 179 VNNAGVMMVPERTTEDGFEEHFGLNYLG 206 Score = 51.6 bits (122), Expect = 1e-06 Identities = 35/96 (36%), Positives = 48/96 (50%), Gaps = 2/96 (2%) Frame = +1 Query: 469 GTGVTTYAVHPGIVQSELVRHSFL-LCLLWRLFSR-FLKTAREGAQTSLHCALAEGLEPL 642 G+ VT V PG+V + L RH F L+ +LF F KT EGA TS++ A+ LE L Sbjct: 282 GSPVTANVVDPGVVNTNLYRHVFWGTRLIKKLFGWWFFKTPDEGAWTSVYAAVTPDLEGL 341 Query: 643 SGKYFSDCKRAWVSPRARNNKTAERLWNVSCELLGI 750 G+Y + K + LW SC++ GI Sbjct: 342 GGRYLYNEKETKSLAVTYDLDLQTELWARSCQMTGI 377 Database: RefSeqCP Posted date: Aug 1, 2006 9:25 PM Number of letters in database: 19,266,565 Number of sequences in database: 33,732 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 37,195,808 Number of Sequences: 33732 Number of extensions: 975561 Number of successful extensions: 3471 Number of sequences better than 1.0e-05: 9 Number of HSP's better than 0.0 without gapping: 3051 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3459 length of database: 19,266,565 effective HSP length: 103 effective length of database: 15,792,169 effective search space used: 3237394645 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
Search to RefSeqHP
BLASTX 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= 20060611S-059192 (927 letters) Database: RefSeqHP 39,411 sequences; 17,774,539 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Alignment gi|NP_689656.1| retinol dehydrogenase 12 (all-trans and 9-cis) ... 204 7e-53 Alignment gi|NP_057110.2| androgen-regulated short-chain dehydrogenase/re... 149 3e-36 Alignment gi|NP_065956.1| retinol dehydrogenase 14 (all-trans and 9-cis) ... 92 5e-19 Alignment gi|NP_653284.1| hypothetical protein LOC147015 [Homo sapiens] 88 9e-18 Alignment gi|NP_612421.1| retinol dehydrogenase 13 (all-trans and 9-cis) ... 85 1e-16 Alignment gi|NP_660160.1| dehydrogenase/reductase (SDR family) X-linked [... 76 3e-14 Alignment gi|NP_057457.1| WW domain-containing oxidoreductase isoform 1 [... 69 4e-12 Alignment gi|XP_371503.3| PREDICTED: similar to short-chain dehydrogenase... 63 3e-10 Alignment gi|XP_947127.1| PREDICTED: similar to short-chain dehydrogenase... 63 3e-10 Alignment gi|NP_078981.1| hypothetical protein FLJ13639 isoform 2 [Homo s... 54 2e-07 >ref|NP_689656.1| retinol dehydrogenase 12 (all-trans and 9-cis) [Homo sapiens] Length = 316 Score = 204 bits (520), Expect = 7e-53 Identities = 130/262 (49%), Positives = 145/262 (55%), Gaps = 76/262 (29%) Frame = +1 Query: 193 QLHPSGARVYIACRDVLKGESAASEIR---------------ADTKNSQVLVRKLDLSDT 327 +L GARVYIACRDVLKGESAASEIR +DTK+ + L++ Sbjct: 58 ELASRGARVYIACRDVLKGESAASEIRVDTKNSQVLVRKLDLSDTKSIRAFAEGF-LAEE 116 Query: 328 KSIRAF--------------AEGFLTEEKQLHILINNAGVMLCPY--------------- 420 K + A+GF T H+ +N+ G L Y Sbjct: 117 KQLHILINNAGVMMCPYSKTADGFET-----HLGVNHLGHFLLTYLLLEQLKVSAPARVV 171 Query: 421 -------------------------------SKTADG-FETHLGVNHLGTGVTTYAVHPG 504 SK A+ F L GTGVTTYAVHPG Sbjct: 172 NVSSVAHHIGKIPFHDLQSEKRYSRGFAYCHSKLANVLFTRELAKRLQGTGVTTYAVHPG 231 Query: 505 IVQSELVRHSFLLCLLWRLFSRFLKTAREGAQTSLHCALAEGLEPLSGKYFSDCKRAWVS 684 +V+SELVRHS LLCLLWRLFS F+KTAREGAQTSLHCALAEGLEPLSGKYFSDCKR WVS Sbjct: 232 VVRSELVRHSSLLCLLWRLFSPFVKTAREGAQTSLHCALAEGLEPLSGKYFSDCKRTWVS 291 Query: 685 PRARNNKTAERLWNVSCELLGI 750 PRARNNKTAERLWNVSCELLGI Sbjct: 292 PRARNNKTAERLWNVSCELLGI 313 Score = 172 bits (437), Expect = 3e-43 Identities = 99/156 (63%), Positives = 102/156 (65%), Gaps = 39/156 (25%) Frame = +1 Query: 139 MLAVLGLLTSFLFFSCM---------------------------------------*QLH 201 ML LGLLTSF F M +L Sbjct: 1 MLVTLGLLTSFFSFLYMVAPSIRKFFAGGVCRTNVQLPGKVVVITGANTGIGKETARELA 60 Query: 202 PSGARVYIACRDVLKGESAASEIRADTKNSQVLVRKLDLSDTKSIRAFAEGFLTEEKQLH 381 GARVYIACRDVLKGESAASEIR DTKNSQVLVRKLDLSDTKSIRAFAEGFL EEKQLH Sbjct: 61 SRGARVYIACRDVLKGESAASEIRVDTKNSQVLVRKLDLSDTKSIRAFAEGFLAEEKQLH 120 Query: 382 ILINNAGVMLCPYSKTADGFETHLGVNHLGTGVTTY 489 ILINNAGVM+CPYSKTADGFETHLGVNHLG + TY Sbjct: 121 ILINNAGVMMCPYSKTADGFETHLGVNHLGHFLLTY 156 >ref|NP_057110.2| androgen-regulated short-chain dehydrogenase/reductase 1 [Homo sapiens] Length = 318 Score = 149 bits (376), Expect = 3e-36 Identities = 73/99 (73%), Positives = 82/99 (82%) Frame = +1 Query: 193 QLHPSGARVYIACRDVLKGESAASEIRADTKNSQVLVRKLDLSDTKSIRAFAEGFLTEEK 372 +L GARVY+ACRDV KGE A EI+ T N QVLVRKLDLSDTKSIRAFA+GFL EEK Sbjct: 60 ELAQRGARVYLACRDVEKGELVAKEIQTTTGNQQVLVRKLDLSDTKSIRAFAKGFLAEEK 119 Query: 373 QLHILINNAGVMLCPYSKTADGFETHLGVNHLGTGVTTY 489 LH+LINNAGVM+CPYSKTADGFE H+GVNHLG + T+ Sbjct: 120 HLHVLINNAGVMMCPYSKTADGFEMHIGVNHLGHFLLTH 158 Score = 144 bits (363), Expect = 1e-34 Identities = 74/123 (60%), Positives = 91/123 (73%), Gaps = 1/123 (0%) Frame = +1 Query: 394 NAGVMLCPYSKTADG-FETHLGVNHLGTGVTTYAVHPGIVQSELVRHSFLLCLLWRLFSR 570 NAG+ C +SK A+ F L G+GVTTY+VHPG VQSELVRHS + +W LFS Sbjct: 197 NAGLAYC-HSKLANILFTQELARRLKGSGVTTYSVHPGTVQSELVRHSSFMRWMWWLFSF 255 Query: 571 FLKTAREGAQTSLHCALAEGLEPLSGKYFSDCKRAWVSPRARNNKTAERLWNVSCELLGI 750 F+KT ++GAQTSLHCAL EGLE LSG +FSDC AWVS +ARN A RLW+VSC+LLG+ Sbjct: 256 FIKTPQQGAQTSLHCALTEGLEILSGNHFSDCHVAWVSVQARNETIARRLWDVSCDLLGL 315 Query: 751 PVE 759 P++ Sbjct: 316 PID 318 >ref|NP_065956.1| retinol dehydrogenase 14 (all-trans and 9-cis) [Homo sapiens] Length = 336 Score = 92.4 bits (228), Expect = 5e-19 Identities = 45/101 (44%), Positives = 63/101 (62%), Gaps = 13/101 (12%) Frame = +1 Query: 208 GARVYIACRDVLKGESAASEIRADTKNS-------------QVLVRKLDLSDTKSIRAFA 348 GARV + CRD + E AA ++R + + + +++VR+LDL+ +S+RAF Sbjct: 67 GARVIMGCRDRARAEEAAGQLRRELRQAAECGPEPGVSGVGELIVRELDLASLRSVRAFC 126 Query: 349 EGFLTEEKQLHILINNAGVMLCPYSKTADGFETHLGVNHLG 471 + L EE +L +LINNAG+ CPY KT DGFE GVNHLG Sbjct: 127 QEMLQEEPRLDVLINNAGIFQCPYMKTEDGFEMQFGVNHLG 167 Score = 77.8 bits (190), Expect = 1e-14 Identities = 40/98 (40%), Positives = 61/98 (62%), Gaps = 4/98 (4%) Frame = +1 Query: 469 GTGVTTYAVHPGIVQSELVRHSFLLCLLWRLFS----RFLKTAREGAQTSLHCALAEGLE 636 GT VT +HPGIV++ L RH + L+ LF+ F KT EGAQTS++ A + +E Sbjct: 237 GTNVTVNVLHPGIVRTNLGRHIHIPLLVKPLFNLVSWAFFKTPVEGAQTSIYLASSPEVE 296 Query: 637 PLSGKYFSDCKRAWVSPRARNNKTAERLWNVSCELLGI 750 +SG+YF DCK + P+A + A +LW++S ++G+ Sbjct: 297 GVSGRYFGDCKEEELLPKAMDESVARKLWDISEVMVGL 334 >ref|NP_653284.1| hypothetical protein LOC147015 [Homo sapiens] Length = 327 Score = 88.2 bits (217), Expect = 9e-18 Identities = 50/96 (52%), Positives = 62/96 (64%), Gaps = 3/96 (3%) Frame = +1 Query: 472 TGVTTYAVHPGIVQSEL-VRH--SFLLCLLWRLFSRFLKTAREGAQTSLHCALAEGLEPL 642 TGVT YA HPG V SEL +RH +L LL L L+ R GAQT L+CAL EG+EPL Sbjct: 168 TGVTCYAAHPGPVNSELFLRHVPGWLRPLLRPLAWLVLRAPRGGAQTPLYCALQEGIEPL 227 Query: 643 SGKYFSDCKRAWVSPRARNNKTAERLWNVSCELLGI 750 SG+YF++C V P AR+++ A RLW S L G+ Sbjct: 228 SGRYFANCHVEEVPPAARDDRAAHRLWEASKRLAGL 263 Score = 82.4 bits (202), Expect = 5e-16 Identities = 43/103 (41%), Positives = 66/103 (64%) Frame = +1 Query: 193 QLHPSGARVYIACRDVLKGESAASEIRADTKNSQVLVRKLDLSDTKSIRAFAEGFLTEEK 372 +L GARV +ACR +GE+AA ++R ++ N++V+ LDL+ S+RAFA FL+ E Sbjct: 5 ELARRGARVVLACRSQERGEAAAFDLRQESGNNEVIFMALDLASLASVRAFATAFLSSEP 64 Query: 373 QLHILINNAGVMLCPYSKTADGFETHLGVNHLGTGVTTYAVHP 501 +L ILI+NAG+ C +T + F L VNH+G + T+ + P Sbjct: 65 RLDILIHNAGISSC--GRTREAFNLLLRVNHIGPFLLTHLLLP 105 >ref|NP_612421.1| retinol dehydrogenase 13 (all-trans and 9-cis) [Homo sapiens] Length = 260 Score = 84.7 bits (208), Expect = 1e-16 Identities = 43/76 (56%), Positives = 52/76 (68%) Frame = +1 Query: 244 KGESAASEIRADTKNSQVLVRKLDLSDTKSIRAFAEGFLTEEKQLHILINNAGVMLCPYS 423 K E+AA +IR +T N V R LDL+ KSIR FA + EE+++ ILINNAGVM CP+ Sbjct: 3 KCEAAAKDIRGETLNHHVNARHLDLASLKSIREFAAKIIEEEERVDILINNAGVMRCPHW 62 Query: 424 KTADGFETHLGVNHLG 471 T DGFE GVNHLG Sbjct: 63 TTEDGFEMQFGVNHLG 78 Score = 67.8 bits (164), Expect = 1e-11 Identities = 38/100 (38%), Positives = 56/100 (56%), Gaps = 6/100 (6%) Frame = +1 Query: 469 GTGVTTYAVHPGIVQSELVRHS------FLLCLLWRLFSRFLKTAREGAQTSLHCALAEG 630 G+GVT A+HPG+ ++EL RH+ F L +F +K+ AQ S + A+AE Sbjct: 149 GSGVTVNALHPGVARTELGRHTGIHGSTFSSTTLGPIFWLLVKSPELAAQPSTYLAVAEE 208 Query: 631 LEPLSGKYFSDCKRAWVSPRARNNKTAERLWNVSCELLGI 750 L +SGKYF K+ +P A + + A RLW S L+G+ Sbjct: 209 LADVSGKYFDGLKQKAPAPEAEDEEVARRLWAESARLVGL 248 >ref|NP_660160.1| dehydrogenase/reductase (SDR family) X-linked [Homo sapiens] Length = 330 Score = 76.3 bits (186), Expect = 3e-14 Identities = 43/109 (39%), Positives = 61/109 (55%) Frame = +1 Query: 208 GARVYIACRDVLKGESAASEIRADTKNSQVLVRKLDLSDTKSIRAFAEGFLTEEKQLHIL 387 G V IA + K + S+I+ +T N +V DL+ SIR F + F ++ LH+L Sbjct: 67 GMHVIIAGNNDSKAKQVVSKIKEETLNDKVEFLYCDLASMTSIRQFVQKFKMKKIPLHVL 126 Query: 388 INNAGVMLCPYSKTADGFETHLGVNHLGTGVTTYAVHPGIVQSELVRHS 534 INNAGVM+ P KT DGFE H G+N+LG + T + + +S HS Sbjct: 127 INNAGVMMVPQRKTRDGFEEHFGLNYLGHFLLTNLLLDTLKESGSPGHS 175 Score = 57.8 bits (138), Expect = 1e-08 Identities = 35/100 (35%), Positives = 51/100 (51%), Gaps = 6/100 (6%) Frame = +1 Query: 469 GTGVTTYAVHPGIVQSELVRHSFLLCLL------WRLFSRFLKTAREGAQTSLHCALAEG 630 G+ VT V PG+V ++L +H F L W LF KT EGA TS++ A+ Sbjct: 230 GSHVTANVVDPGVVNTDLYKHVFWATRLAKKLLGWLLF----KTPDEGAWTSIYAAVTPE 285 Query: 631 LEPLSGKYFSDCKRAWVSPRARNNKTAERLWNVSCELLGI 750 LE + G+Y + K N K ++LW+ SCE+ G+ Sbjct: 286 LEGVGGRYLYNEKETKSLHVTYNQKLQQQLWSKSCEMTGV 325 >ref|NP_057457.1| WW domain-containing oxidoreductase isoform 1 [Homo sapiens] Length = 414 Score = 69.3 bits (168), Expect = 4e-12 Identities = 37/91 (40%), Positives = 57/91 (62%), Gaps = 1/91 (1%) Frame = +1 Query: 475 GVTTYAVHPG-IVQSELVRHSFLLCLLWRLFSRFLKTAREGAQTSLHCALAEGLEPLSGK 651 GVT+ AVHPG ++ S + R ++ LL+ L F K+ ++GA T+++CA LE L G Sbjct: 315 GVTSNAVHPGNMMYSNIHRSWWVYTLLFTLARPFTKSMQQGAATTVYCAAVPELEGLGGM 374 Query: 652 YFSDCKRAWVSPRARNNKTAERLWNVSCELL 744 YF++C R SP A++ +TA LW +S L+ Sbjct: 375 YFNNCCRCMPSPEAQSEETARTLWALSERLI 405 Score = 69.3 bits (168), Expect = 4e-12 Identities = 35/88 (39%), Positives = 50/88 (56%) Frame = +1 Query: 208 GARVYIACRDVLKGESAASEIRADTKNSQVLVRKLDLSDTKSIRAFAEGFLTEEKQLHIL 387 GA V +ACR++ + A S I + ++V LDL+ +S++ FAE F + LH+L Sbjct: 148 GAHVILACRNMARASEAVSRILEEWHKAKVEAMTLDLALLRSVQHFAEAFKAKNVPLHVL 207 Query: 388 INNAGVMLCPYSKTADGFETHLGVNHLG 471 + NA P+S T DG ET VNHLG Sbjct: 208 VCNAATFALPWSLTKDGLETTFQVNHLG 235 >ref|XP_371503.3| PREDICTED: similar to short-chain dehydrogenase/reductase 1 [Homo sapiens] Length = 891 Score = 63.2 bits (152), Expect = 3e-10 Identities = 33/94 (35%), Positives = 58/94 (61%), Gaps = 1/94 (1%) Frame = +1 Query: 208 GARVYIACRDVLKGESAASEIRADTKNSQVLVRKLDLSDTKSIRAFAEGFLTEEKQLHIL 387 GA+V + C+ G+ A +EI+A + ++++L+ ++DLS SIR+FA L E ++H+L Sbjct: 626 GAQVILTCQSRECGQQALAEIQAASNSNRLLLGEVDLSSMTSIRSFARRLLQENPEIHLL 685 Query: 388 INNAGVM-LCPYSKTADGFETHLGVNHLGTGVTT 486 +NNAGV + P + T G + N++G + T Sbjct: 686 VNNAGVSGMIPKTLTPGGLDLTFVTNYVGPFLLT 719 >ref|XP_947127.1| PREDICTED: similar to short-chain dehydrogenase/reductase 1 [Homo sapiens] Length = 916 Score = 63.2 bits (152), Expect = 3e-10 Identities = 33/94 (35%), Positives = 58/94 (61%), Gaps = 1/94 (1%) Frame = +1 Query: 208 GARVYIACRDVLKGESAASEIRADTKNSQVLVRKLDLSDTKSIRAFAEGFLTEEKQLHIL 387 GA+V + C+ G+ A +EI+A + ++++L+ ++DLS SIR+FA L E ++H+L Sbjct: 651 GAQVILTCQSRECGQQALAEIQAASNSNRLLLGEVDLSSMTSIRSFARRLLQENPEIHLL 710 Query: 388 INNAGVM-LCPYSKTADGFETHLGVNHLGTGVTT 486 +NNAGV + P + T G + N++G + T Sbjct: 711 VNNAGVSGMIPKTLTPGGLDLTFVTNYVGPFLLT 744 >ref|NP_078981.1| hypothetical protein FLJ13639 isoform 2 [Homo sapiens] Length = 242 Score = 53.5 bits (127), Expect = 2e-07 Identities = 30/81 (37%), Positives = 42/81 (51%) Frame = +1 Query: 259 ASEIRADTKNSQVLVRKLDLSDTKSIRAFAEGFLTEEKQLHILINNAGVMLCPYSKTADG 438 A ++ + + + + +DLSD K I F E F E K LH+LINNAG M+ T DG Sbjct: 32 AKQLPLKSPSENIFLHIVDLSDPKQIWKFVENFKQEHK-LHVLINNAGCMVNKRELTEDG 90 Query: 439 FETHLGVNHLGTGVTTYAVHP 501 E + N LG + T + P Sbjct: 91 LEKNFAANTLGVYILTTGLIP 111 Database: RefSeqHP Posted date: Aug 2, 2006 12:57 AM Number of letters in database: 17,774,539 Number of sequences in database: 39,411 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 36,187,331 Number of Sequences: 39411 Number of extensions: 987638 Number of successful extensions: 3700 Number of sequences better than 1.0e-05: 10 Number of HSP's better than 0.0 without gapping: 3349 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3689 length of database: 17,774,539 effective HSP length: 102 effective length of database: 13,754,617 effective search space used: 2833451102 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
Search to RefSeqMP
BLASTX 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= 20060611S-059192 (927 letters) Database: RefSeqMP 45,328 sequences; 21,768,885 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Alignment gi|NP_084293.1| retinol dehydrogenase 12 [Mus musculus] 184 9e-47 Alignment gi|NP_067532.2| short-chain dehydrogenase/reductase 1 [Mus musc... 145 4e-35 Alignment gi|NP_076186.1| alcohol dehydrogenase PAN2 [Mus musculus] 94 2e-19 Alignment gi|NP_780581.1| retinol dehydrogenase 13 (all-trans and 9-cis) ... 92 8e-19 Alignment gi|NP_899109.1| hypothetical protein LOC70451 [Mus musculus] 79 7e-15 Alignment gi|NP_001028498.1| dehydrogenase/reductase (SDR family) X chrom... 78 1e-14 Alignment gi|NP_062519.2| WW-domain oxidoreductase [Mus musculus] 71 1e-12 >ref|NP_084293.1| retinol dehydrogenase 12 [Mus musculus] Length = 316 Score = 184 bits (468), Expect = 9e-47 Identities = 118/260 (45%), Positives = 136/260 (52%), Gaps = 71/260 (27%) Frame = +1 Query: 193 QLHPSGARVYIACRDVLKGESAASEIRA---------------DTKNSQVLVRKLDLSDT 327 +L GARVYIACRDVLKGESAASEIRA DTK+ + + L++ Sbjct: 58 ELARRGARVYIACRDVLKGESAASEIRADTKNSQVLVRKLDLSDTKSIRAFAERF-LAEE 116 Query: 328 KSIRAFAEGF---------LTEEKQLHILINNAGVMLCPY-------------------- 420 K + T+ + H +N+ G L Y Sbjct: 117 KKLHILINNAGVMMCPYSKTTDGFETHFGVNHLGHFLLTYLLLERLKESAPARVVNLSSI 176 Query: 421 --------------------------SKTADG-FETHLGVNHLGTGVTTYAVHPGIVQSE 519 SK A+ F L GTGVT YAVHPG+V SE Sbjct: 177 AHLIGKIRFHDLQGQKRYCSAFAYGHSKLANLLFTRELAKRLQGTGVTAYAVHPGVVLSE 236 Query: 520 LVRHSFLLCLLWRLFSRFLKTAREGAQTSLHCALAEGLEPLSGKYFSDCKRAWVSPRARN 699 + R+S+LLCLLWRLFS F K+ +GAQTSLHCALAE LEPLSGKYFSDCKR WVS RARN Sbjct: 237 ITRNSYLLCLLWRLFSPFFKSTSQGAQTSLHCALAEDLEPLSGKYFSDCKRMWVSSRARN 296 Query: 700 NKTAERLWNVSCELLGIPVE 759 KTAERLWNVSCELLGI E Sbjct: 297 KKTAERLWNVSCELLGIQWE 316 >ref|NP_067532.2| short-chain dehydrogenase/reductase 1 [Mus musculus] Length = 316 Score = 145 bits (367), Expect = 4e-35 Identities = 72/94 (76%), Positives = 81/94 (86%) Frame = +1 Query: 208 GARVYIACRDVLKGESAASEIRADTKNSQVLVRKLDLSDTKSIRAFAEGFLTEEKQLHIL 387 GARVY+ACRDV KGE AA EI+A T NSQV VRKLDL+DTKSIRAFA+ FL EEK LH+L Sbjct: 62 GARVYLACRDVDKGELAAREIQAVTGNSQVFVRKLDLADTKSIRAFAKDFLAEEKHLHLL 121 Query: 388 INNAGVMLCPYSKTADGFETHLGVNHLGTGVTTY 489 INNAGVM+CPYSKTADGFE H+GVNHLG + T+ Sbjct: 122 INNAGVMMCPYSKTADGFEMHIGVNHLGHFLLTH 155 Score = 136 bits (342), Expect = 4e-32 Identities = 70/123 (56%), Positives = 90/123 (73%), Gaps = 1/123 (0%) Frame = +1 Query: 394 NAGVMLCPYSKTADG-FETHLGVNHLGTGVTTYAVHPGIVQSELVRHSFLLCLLWRLFSR 570 +AG+ C +SK A+ F L G+GVTTY+VHPG V SEL R+S ++ LW+LF Sbjct: 194 SAGLAYC-HSKLANILFTKELAKRLKGSGVTTYSVHPGTVHSELTRYSSIMRWLWQLFFV 252 Query: 571 FLKTAREGAQTSLHCALAEGLEPLSGKYFSDCKRAWVSPRARNNKTAERLWNVSCELLGI 750 F+KT +EGAQTSL+CAL EGLE LSG +FSDC+ AWVS + RN A RLW+VSC+LLG+ Sbjct: 253 FIKTPQEGAQTSLYCALTEGLESLSGSHFSDCQLAWVSYQGRNEIIARRLWDVSCDLLGL 312 Query: 751 PVE 759 PV+ Sbjct: 313 PVD 315 >ref|NP_076186.1| alcohol dehydrogenase PAN2 [Mus musculus] Length = 334 Score = 94.0 bits (232), Expect = 2e-19 Identities = 47/98 (47%), Positives = 63/98 (64%), Gaps = 10/98 (10%) Frame = +1 Query: 208 GARVYIACRDVLKGESAASEIRA----------DTKNSQVLVRKLDLSDTKSIRAFAEGF 357 GARV + CRD + E AA ++R D + Q++V++LDL+ +S+RAF + Sbjct: 68 GARVIMGCRDRARAEEAAGQLRQELCQAGGAGPDGTDGQLVVKELDLASLRSVRAFCQEL 127 Query: 358 LTEEKQLHILINNAGVMLCPYSKTADGFETHLGVNHLG 471 L EE +L +LINNAGV CPY+KT DGFE GVNHLG Sbjct: 128 LQEEPRLDVLINNAGVFHCPYTKTEDGFEMQFGVNHLG 165 Score = 79.0 bits (193), Expect = 7e-15 Identities = 41/98 (41%), Positives = 60/98 (61%), Gaps = 4/98 (4%) Frame = +1 Query: 469 GTGVTTYAVHPGIVQSELVRHSFLLCLLWRLFS----RFLKTAREGAQTSLHCALAEGLE 636 GT VT +HPGIV++ L RH + L LF+ F KT EGAQTS++ A + +E Sbjct: 235 GTNVTVNVLHPGIVRTNLGRHIHIPLLARPLFNLVSWAFFKTPLEGAQTSIYLACSPDVE 294 Query: 637 PLSGKYFSDCKRAWVSPRARNNKTAERLWNVSCELLGI 750 +SG+YF DCK + P+A + A +LW++S ++GI Sbjct: 295 GVSGRYFGDCKEEELLPKAMDESVARKLWDISEVMVGI 332 >ref|NP_780581.1| retinol dehydrogenase 13 (all-trans and 9-cis) [Mus musculus] Length = 334 Score = 92.0 bits (227), Expect = 8e-19 Identities = 46/93 (49%), Positives = 61/93 (65%) Frame = +1 Query: 193 QLHPSGARVYIACRDVLKGESAASEIRADTKNSQVLVRKLDLSDTKSIRAFAEGFLTEEK 372 +L G V +ACRD+ K E AA +IR +T N +V +LDL+ KSIR FA + EE+ Sbjct: 57 ELAKRGGNVILACRDMEKCEVAAKDIRGETLNPRVRAERLDLASLKSIREFARKVIKEEE 116 Query: 373 QLHILINNAGVMLCPYSKTADGFETHLGVNHLG 471 ++ IL+NNA VM CP+ T DGFE GVN+LG Sbjct: 117 RVDILVNNAAVMRCPHWTTEDGFEMQFGVNYLG 149 Score = 69.3 bits (168), Expect = 5e-12 Identities = 39/100 (39%), Positives = 56/100 (56%), Gaps = 6/100 (6%) Frame = +1 Query: 469 GTGVTTYAVHPGIVQSELVRHS------FLLCLLWRLFSRFLKTAREGAQTSLHCALAEG 630 G+GVT A+HPG+ ++EL RH+ F +L F K+ + AQ S + A+AE Sbjct: 220 GSGVTVNALHPGVARTELGRHTGMHNSAFSGFMLGPFFWLLFKSPQLAAQPSTYLAVAEE 279 Query: 631 LEPLSGKYFSDCKRAWVSPRARNNKTAERLWNVSCELLGI 750 LE +SGKYF + SP A + + A RLW S L+G+ Sbjct: 280 LENVSGKYFDGLREKAPSPEAEDEEVARRLWTESARLVGL 319 >ref|NP_899109.1| hypothetical protein LOC70451 [Mus musculus] Length = 260 Score = 79.0 bits (193), Expect = 7e-15 Identities = 41/103 (39%), Positives = 66/103 (64%) Frame = +1 Query: 193 QLHPSGARVYIACRDVLKGESAASEIRADTKNSQVLVRKLDLSDTKSIRAFAEGFLTEEK 372 +L GARV +ACR +GE+AA ++R ++ N++V+ LDL+ S++AFA FL+ E Sbjct: 55 ELARRGARVVLACRSRERGEAAAFDLRQESGNNEVIFMALDLASLASVQAFATAFLSSEP 114 Query: 373 QLHILINNAGVMLCPYSKTADGFETHLGVNHLGTGVTTYAVHP 501 +L +LI+NAG+ C +T + F L VNH+G + T+ + P Sbjct: 115 RLDVLIHNAGISSC--GRTRETFNLLLRVNHVGPFLLTHLLLP 155 >ref|NP_001028498.1| dehydrogenase/reductase (SDR family) X chromosome [Mus musculus] Length = 335 Score = 78.2 bits (191), Expect = 1e-14 Identities = 44/105 (41%), Positives = 59/105 (56%) Frame = +1 Query: 193 QLHPSGARVYIACRDVLKGESAASEIRADTKNSQVLVRKLDLSDTKSIRAFAEGFLTEEK 372 QL G V +A D +G+ S IRA+ + + LDL+ S+R FA F Sbjct: 62 QLARLGMCVVVAGNDEHRGQEVVSSIRAEMGSDRAHFLPLDLASLASVRGFARDFQALGL 121 Query: 373 QLHILINNAGVMLCPYSKTADGFETHLGVNHLGTGVTTYAVHPGI 507 LH+L+NNAGVML P ++T DGFE HLGVN LG + T + P + Sbjct: 122 PLHLLVNNAGVMLEPRAETEDGFERHLGVNFLGHFLLTLLLLPAL 166 >ref|NP_062519.2| WW-domain oxidoreductase [Mus musculus] Length = 414 Score = 71.2 bits (173), Expect = 1e-12 Identities = 38/91 (41%), Positives = 60/91 (65%), Gaps = 1/91 (1%) Frame = +1 Query: 475 GVTTYAVHPG-IVQSELVRHSFLLCLLWRLFSRFLKTAREGAQTSLHCALAEGLEPLSGK 651 GVT+ AVHPG ++ S + R+S++ LL+ L F K+ ++GA T+++CA+A LE L G Sbjct: 315 GVTSNAVHPGNMMYSAIHRNSWVYKLLFTLARPFTKSMQQGAATTVYCAVAPELEGLGGM 374 Query: 652 YFSDCKRAWVSPRARNNKTAERLWNVSCELL 744 YF++C R S A++ +TA LW +S L+ Sbjct: 375 YFNNCCRCLPSEEAQSEETARALWELSERLI 405 Score = 70.5 bits (171), Expect = 2e-12 Identities = 35/88 (39%), Positives = 50/88 (56%) Frame = +1 Query: 208 GARVYIACRDVLKGESAASEIRADTKNSQVLVRKLDLSDTKSIRAFAEGFLTEEKQLHIL 387 GA V +ACR++ + A S I + ++V LDL+ +S++ FAE F + LH+L Sbjct: 148 GAHVILACRNLSRASEAVSRILEEWHKAKVEAMTLDLAVLRSVQHFAEAFKAKNVSLHVL 207 Query: 388 INNAGVMLCPYSKTADGFETHLGVNHLG 471 + NAG P+ T DG ET VNHLG Sbjct: 208 VCNAGTFALPWGLTKDGLETTFQVNHLG 235 Database: RefSeqMP Posted date: Aug 2, 2006 12:58 AM Number of letters in database: 21,768,885 Number of sequences in database: 45,328 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 42,512,764 Number of Sequences: 45328 Number of extensions: 1111191 Number of successful extensions: 3794 Number of sequences better than 1.0e-05: 7 Number of HSP's better than 0.0 without gapping: 3396 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3782 length of database: 21,768,885 effective HSP length: 103 effective length of database: 17,100,101 effective search space used: 3505520705 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)