BLASTX 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= 20060611S-059361 (1063 letters) Database: RefSeqSP 1040 sequences; 434,620 total letters Searching...done ***** No hits found ****** Database: RefSeqSP Posted date: Aug 1, 2006 7:14 PM Number of letters in database: 434,620 Number of sequences in database: 1040 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 1,038,508 Number of Sequences: 1040 Number of extensions: 26992 Number of successful extensions: 104 Number of sequences better than 1.0e-05: 0 Number of HSP's better than 0.0 without gapping: 94 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 103 length of database: 434,620 effective HSP length: 78 effective length of database: 353,500 effective search space used: 97212500 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
Search to RefSeqBP
BLASTX 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= 20060611S-059361 (1063 letters) Database: RefSeqBP 33,508 sequences; 16,112,626 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Alignment gi|NP_001012698.2| major histocompatibility complex, class II, ... 240 1e-63 Alignment gi|XP_582099.2| PREDICTED: similar to major histocompatibility ... 204 1e-52 Alignment gi|XP_876139.1| PREDICTED: similar to H-2 class II histocompati... 188 5e-48 Alignment gi|NP_001029840.2| MHC class II antigen [Bos taurus] 185 5e-47 Alignment gi|NP_001012694.1| major histocompatibility complex, class II, ... 183 2e-46 Alignment gi|NP_001012697.1| major histocompatibility complex, class II, ... 179 4e-45 Alignment gi|NP_001013618.1| major histocompatibility complex, class II, ... 164 8e-41 Alignment gi|XP_874766.1| PREDICTED: similar to HLA class II histocompati... 110 2e-24 Alignment gi|NP_001035571.1| major histocompatibility complex, class II, ... 52 6e-07 >ref|NP_001012698.2| major histocompatibility complex, class II, DRB3 [Bos taurus] Length = 266 Score = 240 bits (613), Expect = 1e-63 Identities = 120/193 (62%), Positives = 138/193 (71%) Frame = +3 Query: 165 CHFFYGTERVRLLERQYYNGEEFLRFYSDVG*YRAVTELGRPDANDWNSLKDLLEQRRAE 344 CHFF GTERVR L+R +YNGEEF+RF SD G +RAVTELGRP A WNS KD LEQ+RAE Sbjct: 44 CHFFNGTERVRFLDRHFYNGEEFVRFDSDWGEFRAVTELGRPAAEHWNSQKDFLEQKRAE 103 Query: 345 VDTYCRHNFRILDTFLVPRRAEPTVTVYPAKTQPLQLHNLLVCSVTWFYPGHVEVMWLQN 524 VD CRHN+ +++F V RR EPTVTVYPAKTQPLQ HNLLVCSV FYPGH+EV W +N Sbjct: 104 VDRVCRHNYGGVESFTVQRRVEPTVTVYPAKTQPLQHHNLLVCSVNGFYPGHIEVRWFRN 163 Query: 525 GHQEAASVVSTGLIPNGYWTFQTLVMLETVPSYWRGLLLPIVTPHLNYPFTFECKAPPES 704 GH+E A V+STGLI NG WTFQT+VMLETVP + P P T E +A +S Sbjct: 164 GHEEEAGVISTGLIQNGDWTFQTMVMLETVPQSGEVYTCQVDHPKRTSPITVEWRARSDS 223 Query: 705 SPG*NYDWGSGGF 743 + G GGF Sbjct: 224 AQS-KMMSGVGGF 235 >ref|XP_582099.2| PREDICTED: similar to major histocompatibility complex, class II, DR beta 5 precursor [Bos taurus] Length = 255 Score = 204 bits (519), Expect = 1e-52 Identities = 102/181 (56%), Positives = 121/181 (66%) Frame = +3 Query: 165 CHFFYGTERVRLLERQYYNGEEFLRFYSDVG*YRAVTELGRPDANDWNSLKDLLEQRRAE 344 C F G ER+R R YN +E + F SDVG + A+TELGR DA WN KD +EQ RA+ Sbjct: 33 CRFSNGLERMRFFARYIYNTQEDVHFDSDVGEFTALTELGRLDAEYWNQQKDFMEQMRAK 92 Query: 345 VDTYCRHNFRILDTFLVPRRAEPTVTVYPAKTQPLQLHNLLVCSVTWFYPGHVEVMWLQN 524 VDT CR N++ + +FL RR EPTVTVYPAKTQPLQ HNLLVCSV FYPGH+EV W N Sbjct: 93 VDTLCRSNYQGIGSFLRQRRVEPTVTVYPAKTQPLQHHNLLVCSVNGFYPGHIEVRWFWN 152 Query: 525 GHQEAASVVSTGLIPNGYWTFQTLVMLETVPSYWRGLLLPIVTPHLNYPFTFECKAPPES 704 H+E A V+STGLI NG WTFQT+VMLETVP + P P T E +A +S Sbjct: 153 SHEEEAGVISTGLIQNGDWTFQTMVMLETVPQSGEVYTCQVEHPSRTSPLTVEWRAQSDS 212 Query: 705 S 707 + Sbjct: 213 A 213 >ref|XP_876139.1| PREDICTED: similar to H-2 class II histocompatibility antigen, I-E beta chain precursor [Bos taurus] Length = 269 Score = 188 bits (478), Expect = 5e-48 Identities = 96/181 (53%), Positives = 115/181 (63%) Frame = +3 Query: 165 CHFFYGTERVRLLERQYYNGEEFLRFYSDVG*YRAVTELGRPDANDWNSLKDLLEQRRAE 344 CHF GT++VR L+R YN EE ++F S VG YRA TE+GRP A WN L++ RA Sbjct: 8 CHFSNGTQQVRFLDRYIYNREEQVQFDSLVGEYRARTEMGRPAAERWNRWPQALQRARAA 67 Query: 345 VDTYCRHNFRILDTFLVPRRAEPTVTVYPAKTQPLQLHNLLVCSVTWFYPGHVEVMWLQN 524 V YC N+ + V RR +PTVTVYP K++PL HNLLVCSV FYPGH+EV W +N Sbjct: 68 VHAYCASNYEFFASRTVQRRVQPTVTVYPVKSRPLWHHNLLVCSVNGFYPGHIEVRWFRN 127 Query: 525 GHQEAASVVSTGLIPNGYWTFQTLVMLETVPSYWRGLLLPIVTPHLNYPFTFECKAPPES 704 G +E A VVSTGLIPNG WTFQ +VMLE VP + P P T E +A ES Sbjct: 128 GQEEEAGVVSTGLIPNGDWTFQIMVMLEIVPQGGEVYACHVEHPSRTSPVTVEWRAQDES 187 Query: 705 S 707 S Sbjct: 188 S 188 >ref|NP_001029840.2| MHC class II antigen [Bos taurus] Length = 261 Score = 185 bits (470), Expect = 5e-47 Identities = 100/193 (51%), Positives = 119/193 (61%) Frame = +3 Query: 165 CHFFYGTERVRLLERQYYNGEEFLRFYSDVG*YRAVTELGRPDANDWNSLKDLLEQRRAE 344 C+F GTERVR + R YN EE++RF SD YRA+T LGRPDA WNS KD LEQ RAE Sbjct: 47 CYFTNGTERVRYVTRYIYNQEEYVRFDSDWDLYRALTPLGRPDAEYWNSQKDFLEQTRAE 106 Query: 345 VDTYCRHNFRILDTFLVPRRAEPTVTVYPAKTQPLQLHNLLVCSVTWFYPGHVEVMWLQN 524 DT CRHN++ + RR EPTVT+ P++T+ L HNLLVCSVT FYP ++V W +N Sbjct: 107 ADTVCRHNYQAELITSLQRRVEPTVTISPSRTEALNHHNLLVCSVTDFYPSQIKVRWFRN 166 Query: 525 GHQEAASVVSTGLIPNGYWTFQTLVMLETVPSYWRGLLLPIVTPHLNYPFTFECKAPPES 704 +E A VVST LI NG WTFQ LVMLE P + P L P E +A ES Sbjct: 167 DREETAGVVSTPLIRNGDWTFQILVMLEMTPQRGDVYTCHVEHPSLQSPIMVEWRAQSES 226 Query: 705 SPG*NYDWGSGGF 743 + G GGF Sbjct: 227 AQSKMLS-GVGGF 238 >ref|NP_001012694.1| major histocompatibility complex, class II, DQ beta [Bos taurus] Length = 261 Score = 183 bits (465), Expect = 2e-46 Identities = 99/193 (51%), Positives = 122/193 (63%) Frame = +3 Query: 165 CHFFYGTERVRLLERQYYNGEEFLRFYSDVG*YRAVTELGRPDANDWNSLKDLLEQRRAE 344 C+F GTERVR + R YN EE + SDVG YRAVT+LGR A WNS KD+LEQ RAE Sbjct: 47 CYFTNGTERVRYVTRYIYNQEETAYYDSDVGEYRAVTQLGRTLAEYWNSQKDILEQTRAE 106 Query: 345 VDTYCRHNFRILDTFLVPRRAEPTVTVYPAKTQPLQLHNLLVCSVTWFYPGHVEVMWLQN 524 +DT CRHN+++ + R+ EPTVT+ ++T+ L HNLLVCSVT FYPG ++V W QN Sbjct: 107 LDTVCRHNYQLEVITSLQRQVEPTVTISLSRTEALNHHNLLVCSVTDFYPGQIKVRWFQN 166 Query: 525 GHQEAASVVSTGLIPNGYWTFQTLVMLETVPSYWRGLLLPIVTPHLNYPFTFECKAPPES 704 G +E A +VST LI NG WTFQ LVMLE P + P L P + E +A ES Sbjct: 167 GKEETAGIVSTPLIRNGDWTFQILVMLEMTPKRGDVYTCHVEHPSLQSPISVEWRAQSES 226 Query: 705 SPG*NYDWGSGGF 743 + G GGF Sbjct: 227 AQSKMLS-GVGGF 238 >ref|NP_001012697.1| major histocompatibility complex, class II, DY beta [Bos taurus] Length = 259 Score = 179 bits (453), Expect = 4e-45 Identities = 100/193 (51%), Positives = 118/193 (61%) Frame = +3 Query: 165 CHFFYGTERVRLLERQYYNGEEFLRFYSDVG*YRAVTELGRPDANDWNSLKDLLEQRRAE 344 C+F GTE VRL+ RQ YN EE L F SD+G + AVTELGR A WN+ KDLL + RA Sbjct: 45 CYFTNGTEHVRLVARQIYNKEEILHFDSDLGEFVAVTELGRVCAEIWNTQKDLLAEFRAY 104 Query: 345 VDTYCRHNFRILDTFLVPRRAEPTVTVYPAKTQPLQLHNLLVCSVTWFYPGHVEVMWLQN 524 VDT CRHN++ F V RR EPTVTV PA T+ L HNLLVCSVT FYP V+V W +N Sbjct: 105 VDTLCRHNYKETAGFTVQRRVEPTVTVSPASTEALNHHNLLVCSVTDFYPRQVKVKWFRN 164 Query: 525 GHQEAASVVSTGLIPNGYWTFQTLVMLETVPSYWRGLLLPIVTPHLNYPFTFECKAPPES 704 ++ A V T L NG WT+Q VMLETVP + + P L P T E +A ES Sbjct: 165 QQEQTAGVGFTPLTQNGDWTYQIHVMLETVPQLGDVYVCHVDHPSLQSPITVEWRAQSES 224 Query: 705 SPG*NYDWGSGGF 743 + G GGF Sbjct: 225 AQS-KMQSGIGGF 236 >ref|NP_001013618.1| major histocompatibility complex, class II, DO beta [Bos taurus] Length = 271 Score = 164 bits (416), Expect = 8e-41 Identities = 84/181 (46%), Positives = 111/181 (61%) Frame = +3 Query: 165 CHFFYGTERVRLLERQYYNGEEFLRFYSDVG*YRAVTELGRPDANDWNSLKDLLEQRRAE 344 C+F GTE+VR + R +N E++ RF SD+G + A+TELG+PDA WN+ D+L + RA Sbjct: 41 CYFTNGTEKVRFVVRFIFNLEDYARFDSDLGMFVALTELGKPDAERWNNRPDILARSRAS 100 Query: 345 VDTYCRHNFRILDTFLVPRRAEPTVTVYPAKTQPLQLHNLLVCSVTWFYPGHVEVMWLQN 524 VD CR N+ + F V RR +P VTVYP KT LQ NLL+C VT FYPG ++V W +N Sbjct: 101 VDMLCRRNYYLGAPFTVGRRVQPEVTVYPEKTPALQHRNLLLCLVTGFYPGDIKVTWFRN 160 Query: 525 GHQEAASVVSTGLIPNGYWTFQTLVMLETVPSYWRGLLLPIVTPHLNYPFTFECKAPPES 704 G ++ ++STGLI NG WTFQ VML P + P L P + E +A E Sbjct: 161 GQEQREGIMSTGLIRNGDWTFQMTVMLAMTPELGEVYTCLVDHPSLLSPVSVEWRAQSEY 220 Query: 705 S 707 S Sbjct: 221 S 221 >ref|XP_874766.1| PREDICTED: similar to HLA class II histocompatibility antigen, DRB1-7 beta chain precursor (MHC class I antigen DRB1*7) (DR-7) (DR7) [Bos taurus] Length = 347 Score = 110 bits (275), Expect = 2e-24 Identities = 59/115 (51%), Positives = 72/115 (62%) Frame = +3 Query: 399 RRAEPTVTVYPAKTQPLQLHNLLVCSVTWFYPGHVEVMWLQNGHQEAASVVSTGLIPNGY 578 ++ EPTVTVYPAKTQPLQ ++LLVCSV FY GHVEV W G +E A V+STGLI NG Sbjct: 93 KKVEPTVTVYPAKTQPLQHNHLLVCSVNGFYLGHVEVRWFWKGQEEEAGVISTGLIQNGD 152 Query: 579 WTFQTLVMLETVPSYWRGLLLPIVTPHLNYPFTFECKAPPESSPG*NYDWGSGGF 743 WTF+T+VMLETV + P P E +A +S+ G+GGF Sbjct: 153 WTFETIVMLETVLQSGEVYTCQLEHPSWRSPIAEEWRAQSDSAQS-KMMSGTGGF 206 >ref|NP_001035571.1| major histocompatibility complex, class II, DM beta-chain, expressed [Bos taurus] Length = 262 Score = 52.4 bits (124), Expect = 6e-07 Identities = 36/97 (37%), Positives = 46/97 (47%), Gaps = 3/97 (3%) Frame = +3 Query: 390 LVPRRAEPTVTVYPAKTQPLQLHN--LLVCSVTWFYPGHVEVMWLQNGHQEAASVVSTGL 563 L R PTV V AKT P +L C V FYP V + W +NG + + + Sbjct: 108 LTHRTRPPTVQV--AKTTPFNTRESVMLACYVWGFYPADVAITWRRNGQEVLPHGRAWRI 165 Query: 564 I-PNGYWTFQTLVMLETVPSYWRGLLLPIVTPHLNYP 671 I PNG WT+QT+ L T PS+ G V H+ P Sbjct: 166 IQPNGDWTYQTVSHLATTPSF--GDTYTCVVEHIGAP 200 Database: RefSeqBP Posted date: Aug 1, 2006 7:14 PM Number of letters in database: 16,112,626 Number of sequences in database: 33,508 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 38,825,998 Number of Sequences: 33508 Number of extensions: 1053064 Number of successful extensions: 3353 Number of sequences better than 1.0e-05: 9 Number of HSP's better than 0.0 without gapping: 3018 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3329 length of database: 16,112,626 effective HSP length: 102 effective length of database: 12,694,810 effective search space used: 3186397310 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
Search to RefSeqCP
BLASTX 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= 20060611S-059361 (1063 letters) Database: RefSeqCP 33,732 sequences; 19,266,565 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Alignment gi|NP_001014768.1| MHC class II DLA DRB1 beta chain [Canis fami... 227 2e-59 Alignment gi|NP_001014403.1| MHC class II DLA-DQ beta chain b1 domain [Ca... 191 8e-49 Alignment gi|XP_861384.1| PREDICTED: similar to HLA class II histocompati... 172 1e-44 Alignment gi|XP_850395.1| PREDICTED: similar to HLA class II histocompati... 174 1e-43 Alignment gi|XP_849737.1| PREDICTED: similar to HLA class II histocompati... 53 6e-07 >ref|NP_001014768.1| MHC class II DLA DRB1 beta chain [Canis familiaris] Length = 266 Score = 227 bits (578), Expect = 2e-59 Identities = 120/211 (56%), Positives = 143/211 (67%) Frame = +3 Query: 111 FGQETPHTHYLAPD*NS*CHFFYGTERVRLLERQYYNGEEFLRFYSDVG*YRAVTELGRP 290 + ++TP H+L S C+F GTERVR +ER +N EEF+RF SDVG +RAVTELGRP Sbjct: 28 WARDTP-PHFLEVA-KSECYFTNGTERVRFVERYIHNREEFVRFDSDVGEFRAVTELGRP 85 Query: 291 DANDWNSLKDLLEQRRAEVDTYCRHNFRILDTFLVPRRAEPTVTVYPAKTQPLQLHNLLV 470 A WN K++LEQ RA VDTYCRHN+ ++++F V RR EPTVTVYP KTQ LQ HNLLV Sbjct: 86 VAESWNGQKEILEQERATVDTYCRHNYGVIESFTVQRRVEPTVTVYPTKTQTLQHHNLLV 145 Query: 471 CSVTWFYPGHVEVMWLQNGHQEAASVVSTGLIPNGYWTFQTLVMLETVPSYWRGLLLPIV 650 CSV FYPGH+EV WL+NG +E A VVSTGLI NG WTFQ LVMLE VP + Sbjct: 146 CSVNGFYPGHIEVRWLRNGQEEEAGVVSTGLIRNGDWTFQILVMLEIVPQSGEVYTCQVE 205 Query: 651 TPHLNYPFTFECKAPPESSPG*NYDWGSGGF 743 P L P T E +A +S+ G GGF Sbjct: 206 HPSLTSPVTVEWRAQSDSAQSKMLS-GIGGF 235 >ref|NP_001014403.1| MHC class II DLA-DQ beta chain b1 domain [Canis familiaris] Length = 269 Score = 191 bits (486), Expect = 8e-49 Identities = 101/193 (52%), Positives = 125/193 (64%) Frame = +3 Query: 165 CHFFYGTERVRLLERQYYNGEEFLRFYSDVG*YRAVTELGRPDANDWNSLKDLLEQRRAE 344 C+F GTERVRLL + YN EEF+RF SDVG +RAVTELGRPDA WN KD +++ RAE Sbjct: 47 CYFTNGTERVRLLTKYIYNREEFVRFDSDVGEFRAVTELGRPDAEYWNRQKDEMDRVRAE 106 Query: 345 VDTYCRHNFRILDTFLVPRRAEPTVTVYPAKTQPLQLHNLLVCSVTWFYPGHVEVMWLQN 524 +DT CRHN+ + + RR EPTVT++P+KT+ L HNLLVCSVT FYPG ++V W +N Sbjct: 107 LDTVCRHNYGREELTTLQRRVEPTVTIFPSKTEVLNHHNLLVCSVTDFYPGQIKVRWFRN 166 Query: 525 GHQEAASVVSTGLIPNGYWTFQTLVMLETVPSYWRGLLLPIVTPHLNYPFTFECKAPPES 704 ++ A VVST LI NG WTFQ LVMLE P + L P T + +A ES Sbjct: 167 DQEQTAGVVSTPLIRNGDWTFQILVMLEMTPQRGDVYTCHVEHASLQSPITVQWRAQSES 226 Query: 705 SPG*NYDWGSGGF 743 + G GGF Sbjct: 227 AQSKMLS-GIGGF 238 >ref|XP_861384.1| PREDICTED: similar to HLA class II histocompatibility antigen, DO beta chain precursor (MHC class II antigen DOB) isoform 2 [Canis familiaris] Length = 228 Score = 172 bits (437), Expect(2) = 1e-44 Identities = 81/151 (53%), Positives = 106/151 (70%) Frame = +3 Query: 165 CHFFYGTERVRLLERQYYNGEEFLRFYSDVG*YRAVTELGRPDANDWNSLKDLLEQRRAE 344 C+F GTE+V+ + R +N EE+ RF S VG + A+TELG+PDA WNS +LE+ RA Sbjct: 41 CYFINGTEKVQFVVRFIFNLEEYARFDSHVGMFVALTELGKPDAELWNSQPGILERSRAS 100 Query: 345 VDTYCRHNFRILDTFLVPRRAEPTVTVYPAKTQPLQLHNLLVCSVTWFYPGHVEVMWLQN 524 VD CRHN+ + F V R+ +P VTVYP +T +Q HNLL+CSVT FYPG +++ W +N Sbjct: 101 VDLLCRHNYELGAPFTVGRKVQPEVTVYPERTPSMQHHNLLLCSVTGFYPGDIKIKWFRN 160 Query: 525 GHQEAASVVSTGLIPNGYWTFQTLVMLETVP 617 G +E V+STGLI NG WTFQT+VMLE P Sbjct: 161 GQEERVGVMSTGLIRNGDWTFQTMVMLEMTP 191 Score = 26.6 bits (57), Expect(2) = 1e-44 Identities = 9/23 (39%), Positives = 17/23 (73%) Frame = +1 Query: 604 LKQFPRIGEVFSCLL*HPT*TTP 672 L+ P +G+V++CL+ HP+ +P Sbjct: 187 LEMTPELGDVYTCLVNHPSLLSP 209 >ref|XP_850395.1| PREDICTED: similar to HLA class II histocompatibility antigen, DO beta chain precursor (MHC class II antigen DOB) isoform 1 [Canis familiaris] Length = 270 Score = 174 bits (441), Expect = 1e-43 Identities = 86/176 (48%), Positives = 114/176 (64%) Frame = +3 Query: 165 CHFFYGTERVRLLERQYYNGEEFLRFYSDVG*YRAVTELGRPDANDWNSLKDLLEQRRAE 344 C+F GTE+V+ + R +N EE+ RF S VG + A+TELG+PDA WNS +LE+ RA Sbjct: 41 CYFINGTEKVQFVVRFIFNLEEYARFDSHVGMFVALTELGKPDAELWNSQPGILERSRAS 100 Query: 345 VDTYCRHNFRILDTFLVPRRAEPTVTVYPAKTQPLQLHNLLVCSVTWFYPGHVEVMWLQN 524 VD CRHN+ + F V R+ +P VTVYP +T +Q HNLL+CSVT FYPG +++ W +N Sbjct: 101 VDLLCRHNYELGAPFTVGRKVQPEVTVYPERTPSMQHHNLLLCSVTGFYPGDIKIKWFRN 160 Query: 525 GHQEAASVVSTGLIPNGYWTFQTLVMLETVPSYWRGLLLPIVTPHLNYPFTFECKA 692 G +E V+STGLI NG WTFQT+VMLE P + P L P + E +A Sbjct: 161 GQEERVGVMSTGLIRNGDWTFQTMVMLEMTPELGDVYTCLVNHPSLLSPVSVEWRA 216 >ref|XP_849737.1| PREDICTED: similar to HLA class II histocompatibility antigen, DM beta chain precursor (MHC class II antigen DMB) [Canis familiaris] Length = 263 Score = 52.8 bits (125), Expect = 6e-07 Identities = 38/116 (32%), Positives = 54/116 (46%), Gaps = 7/116 (6%) Frame = +3 Query: 297 NDWNSLKDLLEQRRAEVDTYCRHNFRILDTFLVPRRAEPTVTVYPAKTQPLQLHN--LLV 470 +D+ + ++ L QR + C + + L R PTV V AK+ P +L Sbjct: 77 SDYLNQQEYLHQRLSNGLQDCATHTQSFWGSLTHRTRPPTVQV--AKSTPFNTKESVMLA 134 Query: 471 CSVTWFYPGHVEVMWLQNG-----HQEAASVVSTGLIPNGYWTFQTLVMLETVPSY 623 C V FYP V + W +NG H A ++ PNG WT+QT+ L T PSY Sbjct: 135 CYVWGFYPADVTISWRKNGQPVPSHSSALNMAQ----PNGDWTYQTVSHLATTPSY 186 Database: RefSeqCP Posted date: Aug 1, 2006 9:25 PM Number of letters in database: 19,266,565 Number of sequences in database: 33,732 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 45,717,982 Number of Sequences: 33732 Number of extensions: 1241622 Number of successful extensions: 4064 Number of sequences better than 1.0e-05: 5 Number of HSP's better than 0.0 without gapping: 3550 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4040 length of database: 19,266,565 effective HSP length: 104 effective length of database: 15,758,437 effective search space used: 3923850813 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
Search to RefSeqHP
BLASTX 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= 20060611S-059361 (1063 letters) Database: RefSeqHP 39,411 sequences; 17,774,539 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Alignment gi|NP_002115.1| major histocompatibility complex, class II, DR ... 241 8e-64 Alignment gi|NP_072049.2| major histocompatibility complex, class II, DR ... 232 4e-61 Alignment gi|NP_002116.2| major histocompatibility complex, class II, DR ... 231 1e-60 Alignment gi|XP_945926.1| PREDICTED: similar to HLA class II histocompati... 229 2e-60 Alignment gi|XP_949915.1| PREDICTED: similar to HLA class II histocompati... 229 2e-60 Alignment gi|NP_068818.4| major histocompatibility complex, class II, DR ... 225 6e-59 Alignment gi|XP_949921.1| PREDICTED: similar to HLA class II histocompati... 224 7e-59 Alignment gi|NP_002114.2| major histocompatibility complex, class II, DQ ... 186 2e-47 Alignment gi|NP_002112.3| major histocompatibility complex, class II, DP ... 183 2e-46 Alignment gi|NP_872355.1| major histocompatibility complex, class II, DQ ... 173 2e-43 >ref|NP_002115.1| major histocompatibility complex, class II, DR beta 1 precursor [Homo sapiens] Length = 266 Score = 241 bits (615), Expect = 8e-64 Identities = 125/193 (64%), Positives = 139/193 (72%) Frame = +3 Query: 165 CHFFYGTERVRLLERQYYNGEEFLRFYSDVG*YRAVTELGRPDANDWNSLKDLLEQRRAE 344 CHFF GTERVRLLER YN EE +RF SDVG YRAVTELGRPDA WNS KDLLEQRRA Sbjct: 44 CHFFNGTERVRLLERCIYNQEESVRFDSDVGEYRAVTELGRPDAEYWNSQKDLLEQRRAA 103 Query: 345 VDTYCRHNFRILDTFLVPRRAEPTVTVYPAKTQPLQLHNLLVCSVTWFYPGHVEVMWLQN 524 VDTYCRHN+ + ++F V RR EP VTVYP+KTQPLQ HNLLVCSV+ FYPG +EV W +N Sbjct: 104 VDTYCRHNYGVGESFTVQRRVEPKVTVYPSKTQPLQHHNLLVCSVSGFYPGSIEVRWFRN 163 Query: 525 GHQEAASVVSTGLIPNGYWTFQTLVMLETVPSYWRGLLLPIVTPHLNYPFTFECKAPPES 704 G +E A VVSTGLI NG WTFQTLVMLETVP + P + P T E +A ES Sbjct: 164 GQEEKAGVVSTGLIQNGDWTFQTLVMLETVPRSGEVYTCQVEHPSVTSPLTVEWRARSES 223 Query: 705 SPG*NYDWGSGGF 743 + G GGF Sbjct: 224 AQSKMLS-GVGGF 235 >ref|NP_072049.2| major histocompatibility complex, class II, DR beta 3 precursor [Homo sapiens] Length = 266 Score = 232 bits (592), Expect = 4e-61 Identities = 119/193 (61%), Positives = 135/193 (69%) Frame = +3 Query: 165 CHFFYGTERVRLLERQYYNGEEFLRFYSDVG*YRAVTELGRPDANDWNSLKDLLEQRRAE 344 CHFF GTERVR L+R ++N EEFLRF SDVG YRAVTELGRP A WNS KDLLEQ+R Sbjct: 44 CHFFNGTERVRYLDRYFHNQEEFLRFDSDVGEYRAVTELGRPVAESWNSQKDLLEQKRGR 103 Query: 345 VDTYCRHNFRILDTFLVPRRAEPTVTVYPAKTQPLQLHNLLVCSVTWFYPGHVEVMWLQN 524 VD YCRHN+ + ++F V RR P VTVYPAKTQPLQ HNLLVCSV+ FYPG +EV W +N Sbjct: 104 VDNYCRHNYGVGESFTVQRRVHPQVTVYPAKTQPLQHHNLLVCSVSGFYPGSIEVRWFRN 163 Query: 525 GHQEAASVVSTGLIPNGYWTFQTLVMLETVPSYWRGLLLPIVTPHLNYPFTFECKAPPES 704 G +E A VVSTGLI NG WTFQTLVMLETVP + P + T E +A ES Sbjct: 164 GQEEKAGVVSTGLIQNGDWTFQTLVMLETVPRSGEVYTCQVEHPSVTSALTVEWRARSES 223 Query: 705 SPG*NYDWGSGGF 743 + G GGF Sbjct: 224 AQSKMLS-GVGGF 235 >ref|NP_002116.2| major histocompatibility complex, class II, DR beta 5 precursor [Homo sapiens] Length = 266 Score = 231 bits (588), Expect = 1e-60 Identities = 120/193 (62%), Positives = 132/193 (68%) Frame = +3 Query: 165 CHFFYGTERVRLLERQYYNGEEFLRFYSDVG*YRAVTELGRPDANDWNSLKDLLEQRRAE 344 CHFF GTERVR L R YN EE LRF SDVG YRAVTELGRPDA WNS KD LE RRA Sbjct: 44 CHFFNGTERVRFLHRDIYNQEEDLRFDSDVGEYRAVTELGRPDAEYWNSQKDFLEDRRAA 103 Query: 345 VDTYCRHNFRILDTFLVPRRAEPTVTVYPAKTQPLQLHNLLVCSVTWFYPGHVEVMWLQN 524 VDTYCRHN+ + ++F V RR EP VTVYPA+TQ LQ HNLLVCSV FYPG +EV W +N Sbjct: 104 VDTYCRHNYGVGESFTVQRRVEPKVTVYPARTQTLQHHNLLVCSVNGFYPGSIEVRWFRN 163 Query: 525 GHQEAASVVSTGLIPNGYWTFQTLVMLETVPSYWRGLLLPIVTPHLNYPFTFECKAPPES 704 +E A VVSTGLI NG WTFQTLVMLETVP + P + P T E +A ES Sbjct: 164 SQEEKAGVVSTGLIQNGDWTFQTLVMLETVPRSGEVYTCQVEHPSVTSPLTVEWRAQSES 223 Query: 705 SPG*NYDWGSGGF 743 + G GGF Sbjct: 224 AQSKMLS-GVGGF 235 >ref|XP_945926.1| PREDICTED: similar to HLA class II histocompatibility antigen, DRB1-9 beta chain precursor (MHC class I antigen DRB1*9) (DR-9) (DR9) isoform 1 [Homo sapiens] Length = 266 Score = 229 bits (585), Expect = 2e-60 Identities = 120/193 (62%), Positives = 134/193 (69%) Frame = +3 Query: 165 CHFFYGTERVRLLERQYYNGEEFLRFYSDVG*YRAVTELGRPDANDWNSLKDLLEQRRAE 344 CHFF GTERVR L R YN EE +RF SDVG YRAVTELGRP A WNS KD LE+RRAE Sbjct: 44 CHFFNGTERVRYLHRGIYNQEENVRFDSDVGEYRAVTELGRPVAESWNSQKDFLERRRAE 103 Query: 345 VDTYCRHNFRILDTFLVPRRAEPTVTVYPAKTQPLQLHNLLVCSVTWFYPGHVEVMWLQN 524 VDT CRHN+ + ++F V RR P VTVYPAKTQPLQ HNLLVCSV+ FYPG +EV W +N Sbjct: 104 VDTVCRHNYGVGESFTVQRRVHPEVTVYPAKTQPLQHHNLLVCSVSGFYPGSIEVRWFRN 163 Query: 525 GHQEAASVVSTGLIPNGYWTFQTLVMLETVPSYWRGLLLPIVTPHLNYPFTFECKAPPES 704 G +E A VVSTGLI NG WTFQTLVMLETVP + P + P T E +A ES Sbjct: 164 GQEEKAGVVSTGLIQNGDWTFQTLVMLETVPRSGEVYTCQVEHPSVMSPLTVEWRARSES 223 Query: 705 SPG*NYDWGSGGF 743 + G GGF Sbjct: 224 AQSKMLS-GVGGF 235 >ref|XP_949915.1| PREDICTED: similar to HLA class II histocompatibility antigen, DRB1-9 beta chain precursor (MHC class I antigen DRB1*9) (DR-9) (DR9) isoform 2 [Homo sapiens] Length = 284 Score = 229 bits (585), Expect = 2e-60 Identities = 120/193 (62%), Positives = 134/193 (69%) Frame = +3 Query: 165 CHFFYGTERVRLLERQYYNGEEFLRFYSDVG*YRAVTELGRPDANDWNSLKDLLEQRRAE 344 CHFF GTERVR L R YN EE +RF SDVG YRAVTELGRP A WNS KD LE+RRAE Sbjct: 62 CHFFNGTERVRYLHRGIYNQEENVRFDSDVGEYRAVTELGRPVAESWNSQKDFLERRRAE 121 Query: 345 VDTYCRHNFRILDTFLVPRRAEPTVTVYPAKTQPLQLHNLLVCSVTWFYPGHVEVMWLQN 524 VDT CRHN+ + ++F V RR P VTVYPAKTQPLQ HNLLVCSV+ FYPG +EV W +N Sbjct: 122 VDTVCRHNYGVGESFTVQRRVHPEVTVYPAKTQPLQHHNLLVCSVSGFYPGSIEVRWFRN 181 Query: 525 GHQEAASVVSTGLIPNGYWTFQTLVMLETVPSYWRGLLLPIVTPHLNYPFTFECKAPPES 704 G +E A VVSTGLI NG WTFQTLVMLETVP + P + P T E +A ES Sbjct: 182 GQEEKAGVVSTGLIQNGDWTFQTLVMLETVPRSGEVYTCQVEHPSVMSPLTVEWRARSES 241 Query: 705 SPG*NYDWGSGGF 743 + G GGF Sbjct: 242 AQSKMLS-GVGGF 253 >ref|NP_068818.4| major histocompatibility complex, class II, DR beta 4 precursor [Homo sapiens] Length = 266 Score = 225 bits (573), Expect = 6e-59 Identities = 115/193 (59%), Positives = 135/193 (69%) Frame = +3 Query: 165 CHFFYGTERVRLLERQYYNGEEFLRFYSDVG*YRAVTELGRPDANDWNSLKDLLEQRRAE 344 CHF GTERV L R YN EE+ R+ SD+G Y+AVTELGRPDA WNS KDLLE+RRAE Sbjct: 44 CHFLNGTERVWNLIRYIYNQEEYARYNSDLGEYQAVTELGRPDAEYWNSQKDLLERRRAE 103 Query: 345 VDTYCRHNFRILDTFLVPRRAEPTVTVYPAKTQPLQLHNLLVCSVTWFYPGHVEVMWLQN 524 VDTYCR+N+ ++++F V RR +P VTVYP+KTQPLQ HNLLVCSV FYPG +EV W +N Sbjct: 104 VDTYCRYNYGVVESFTVQRRVQPKVTVYPSKTQPLQHHNLLVCSVNGFYPGSIEVRWFRN 163 Query: 525 GHQEAASVVSTGLIPNGYWTFQTLVMLETVPSYWRGLLLPIVTPHLNYPFTFECKAPPES 704 G +E A VVSTGLI NG WTFQTLVMLETVP + P + P T + A ES Sbjct: 164 GQEEKAGVVSTGLIQNGDWTFQTLVMLETVPRSGEVYTCQVEHPSMMSPLTVQWSARSES 223 Query: 705 SPG*NYDWGSGGF 743 + G GGF Sbjct: 224 AQSKMLS-GVGGF 235 >ref|XP_949921.1| PREDICTED: similar to HLA class II histocompatibility antigen, DRB1-9 beta chain precursor (MHC class I antigen DRB1*9) (DR-9) (DR9) isoform 3 [Homo sapiens] Length = 325 Score = 224 bits (572), Expect = 7e-59 Identities = 113/173 (65%), Positives = 125/173 (72%) Frame = +3 Query: 165 CHFFYGTERVRLLERQYYNGEEFLRFYSDVG*YRAVTELGRPDANDWNSLKDLLEQRRAE 344 CHFF GTERVR L R YN EE +RF SDVG YRAVTELGRP A WNS KD LE+RRAE Sbjct: 44 CHFFNGTERVRYLHRGIYNQEENVRFDSDVGEYRAVTELGRPVAESWNSQKDFLERRRAE 103 Query: 345 VDTYCRHNFRILDTFLVPRRAEPTVTVYPAKTQPLQLHNLLVCSVTWFYPGHVEVMWLQN 524 VDT CRHN+ + ++F V RR P VTVYPAKTQPLQ HNLLVCSV+ FYPG +EV W +N Sbjct: 104 VDTVCRHNYGVGESFTVQRRVHPEVTVYPAKTQPLQHHNLLVCSVSGFYPGSIEVRWFRN 163 Query: 525 GHQEAASVVSTGLIPNGYWTFQTLVMLETVPSYWRGLLLPIVTPHLNYPFTFE 683 G +E A VVSTGLI NG WTFQTLVMLETVP + P + P T E Sbjct: 164 GQEEKAGVVSTGLIQNGDWTFQTLVMLETVPRSGEVYTCQVEHPSVMSPLTVE 216 >ref|NP_002114.2| major histocompatibility complex, class II, DQ beta 1 precursor [Homo sapiens] Length = 261 Score = 186 bits (473), Expect = 2e-47 Identities = 100/193 (51%), Positives = 122/193 (63%) Frame = +3 Query: 165 CHFFYGTERVRLLERQYYNGEEFLRFYSDVG*YRAVTELGRPDANDWNSLKDLLEQRRAE 344 C+F GTERVRL+ R YN EE +RF SDVG +RAVT LG P A WNS KD+LE++RA Sbjct: 47 CYFTNGTERVRLVSRSIYNREEIVRFDSDVGEFRAVTLLGLPAAEYWNSQKDILERKRAA 106 Query: 345 VDTYCRHNFRILDTFLVPRRAEPTVTVYPAKTQPLQLHNLLVCSVTWFYPGHVEVMWLQN 524 VD CRHN+++ + RR EPTVT+ P++T+ L HNLLVCSVT FYP ++V W +N Sbjct: 107 VDRVCRHNYQLELRTTLQRRVEPTVTISPSRTEALNHHNLLVCSVTDFYPAQIKVRWFRN 166 Query: 525 GHQEAASVVSTGLIPNGYWTFQTLVMLETVPSYWRGLLLPIVTPHLNYPFTFECKAPPES 704 +E A VVST LI NG WTFQ LVMLE P + P L P T E +A ES Sbjct: 167 DQEETAGVVSTPLIRNGDWTFQILVMLEMTPQRGDVYTCHVEHPSLQSPITVEWRAQSES 226 Query: 705 SPG*NYDWGSGGF 743 + G GGF Sbjct: 227 AQSKMLS-GIGGF 238 >ref|NP_002112.3| major histocompatibility complex, class II, DP beta 1 precursor [Homo sapiens] Length = 258 Score = 183 bits (464), Expect = 2e-46 Identities = 100/193 (51%), Positives = 119/193 (61%) Frame = +3 Query: 165 CHFFYGTERVRLLERQYYNGEEFLRFYSDVG*YRAVTELGRPDANDWNSLKDLLEQRRAE 344 C+ F GT+R LER YN EEF RF SDVG +RAVTELGRP A WNS KD+LE++RA Sbjct: 44 CYAFNGTQR--FLERYIYNREEFARFDSDVGEFRAVTELGRPAAEYWNSQKDILEEKRAV 101 Query: 345 VDTYCRHNFRILDTFLVPRRAEPTVTVYPAKTQPLQLHNLLVCSVTWFYPGHVEVMWLQN 524 D CRHN+ + + RR +P V V P+K PLQ HNLLVC VT FYPG ++V W N Sbjct: 102 PDRMCRHNYELGGPMTLQRRVQPRVNVSPSKKGPLQHHNLLVCHVTDFYPGSIQVRWFLN 161 Query: 525 GHQEAASVVSTGLIPNGYWTFQTLVMLETVPSYWRGLLLPIVTPHLNYPFTFECKAPPES 704 G +E A VVST LI NG WTFQ LVMLE P + L+ P T E KA +S Sbjct: 162 GQEETAGVVSTNLIRNGDWTFQILVMLEMTPQQGDVYTCQVEHTSLDSPVTVEWKAQSDS 221 Query: 705 SPG*NYDWGSGGF 743 + G+GGF Sbjct: 222 ARSKTLT-GAGGF 233 >ref|NP_872355.1| major histocompatibility complex, class II, DQ beta 2 [Homo sapiens] Length = 231 Score = 173 bits (439), Expect = 2e-43 Identities = 93/180 (51%), Positives = 112/180 (62%), Gaps = 2/180 (1%) Frame = +3 Query: 165 CHFFYGTERVRLLERQYYNGEEFLRFYSDVG*YRAVTELGRPDANDWNSLKDLLEQRRAE 344 C+F GTERVR + R YN EE+ RF SDVG ++AVTELGR DWN+ KD LEQ RA Sbjct: 47 CYFTNGTERVRGVARYIYNREEYGRFDSDVGEFQAVTELGR-SIEDWNNYKDFLEQERAA 105 Query: 345 VDTYCRHNFRILDTFLVPRRAEPTVTVYPAKTQPLQLHNLLVCSVTWFYPGHVEVMWLQN 524 VD CRHN+ + R+ EPTVT+ P++T+ L HNLLVCSVT FYP ++V W +N Sbjct: 106 VDKVCRHNYEAELRTTLQRQVEPTVTISPSRTEALNHHNLLVCSVTDFYPAQIKVQWFRN 165 Query: 525 GHQEAASVVSTGLIPNGYWTFQTLVMLETVPSYWRGLLLPIVTPHLNYPFTFEC--KAPP 698 +E A VVST LI NG WTFQ LVMLE P + P L P T E + PP Sbjct: 166 DQEETAGVVSTSLIRNGDWTFQILVMLEITPQRGDIYTCQVEHPSLQSPITVEWRPRGPP 225 Database: RefSeqHP Posted date: Aug 2, 2006 12:57 AM Number of letters in database: 17,774,539 Number of sequences in database: 39,411 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 43,959,796 Number of Sequences: 39411 Number of extensions: 1221145 Number of successful extensions: 4356 Number of sequences better than 1.0e-05: 10 Number of HSP's better than 0.0 without gapping: 3694 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4298 length of database: 17,774,539 effective HSP length: 103 effective length of database: 13,715,206 effective search space used: 3428801500 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
Search to RefSeqMP
BLASTX 2.2.10 [Oct-19-2004] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= 20060611S-059361 (1063 letters) Database: RefSeqMP 45,328 sequences; 21,768,885 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Alignment gi|NP_034512.1| histocompatibility 2, class II antigen E beta [... 236 2e-62 Alignment gi|NP_001029150.1| H-2 class II histocompatibility antigen E-a/... 183 3e-46 Alignment gi|NP_034519.2| histocompatibility 2, O region beta locus [Mus ... 169 1e-43 Alignment gi|NP_996988.1| histocompatibility 2, class II antigen A, beta ... 173 3e-43 >ref|NP_034512.1| histocompatibility 2, class II antigen E beta [Mus musculus] Length = 264 Score = 236 bits (603), Expect = 2e-62 Identities = 117/193 (60%), Positives = 139/193 (72%) Frame = +3 Query: 165 CHFFYGTERVRLLERQYYNGEEFLRFYSDVG*YRAVTELGRPDANDWNSLKDLLEQRRAE 344 CHF+ GT+RVR L+R +YN EE LRF SDVG +RAVTELGRPDA +WNS ++L+++RA Sbjct: 42 CHFYNGTQRVRFLKRYFYNLEENLRFDSDVGEFRAVTELGRPDAENWNSQPEILDEKRAA 101 Query: 345 VDTYCRHNFRILDTFLVPRRAEPTVTVYPAKTQPLQLHNLLVCSVTWFYPGHVEVMWLQN 524 VDTYCRHN+ I D FLVPRR EPTVTVYP KTQPL+ HNLLVCSV+ FYPG++EV W +N Sbjct: 102 VDTYCRHNYEIFDNFLVPRRVEPTVTVYPTKTQPLEHHNLLVCSVSDFYPGNIEVRWFRN 161 Query: 525 GHQEAASVVSTGLIPNGYWTFQTLVMLETVPSYWRGLLLPIVTPHLNYPFTFECKAPPES 704 G +E +VSTGL+ NG WTFQTLVMLETVP + P L P T E KA S Sbjct: 162 GKEEKTGIVSTGLVRNGDWTFQTLVMLETVPQSGEVYTCQVEHPSLTDPVTVEWKAQSTS 221 Query: 705 SPG*NYDWGSGGF 743 + G GGF Sbjct: 222 AQNKMLS-GVGGF 233 >ref|NP_001029150.1| H-2 class II histocompatibility antigen E-a/k beta-2 [Mus musculus] Length = 287 Score = 183 bits (464), Expect = 3e-46 Identities = 97/181 (53%), Positives = 118/181 (65%) Frame = +3 Query: 165 CHFFYGTERVRLLERQYYNGEEFLRFYSDVG*YRAVTELGRPDANDWNSLKDLLEQRRAE 344 CH+F G ERV + R YN EEF RF SD G + AVTELGRP N+ KD+L+ RA Sbjct: 44 CHYFNGKERVWSVTRFIYNQEEFARFNSDFGKFLAVTELGRPIVEYLNTQKDMLDNYRAS 103 Query: 345 VDTYCRHNFRILDTFLVPRRAEPTVTVYPAKTQPLQLHNLLVCSVTWFYPGHVEVMWLQN 524 VD CR+N+ ++D F++ +AEP VTVYPAKTQPL+ HNLLVCSV FYPG +EV W +N Sbjct: 104 VDR-CRNNYDLVDIFMLNLKAEPKVTVYPAKTQPLEHHNLLVCSVIDFYPGSIEVRWFRN 162 Query: 525 GHQEAASVVSTGLIPNGYWTFQTLVMLETVPSYWRGLLLPIVTPHLNYPFTFECKAPPES 704 G +E VVSTGLI N WT+QTLVMLE VP + P L P T E +A S Sbjct: 163 GEEEKTGVVSTGLIQNRDWTYQTLVMLEMVPRGGEVYTCQVEHPSLTSPVTVEWRARSTS 222 Query: 705 S 707 + Sbjct: 223 A 223 >ref|NP_034519.2| histocompatibility 2, O region beta locus [Mus musculus] Length = 271 Score = 169 bits (429), Expect(2) = 1e-43 Identities = 82/151 (54%), Positives = 103/151 (68%) Frame = +3 Query: 165 CHFFYGTERVRLLERQYYNGEEFLRFYSDVG*YRAVTELGRPDANDWNSLKDLLEQRRAE 344 C+F GTE+V LL R +N EE+L F SD+G + A+TELG PDA+ WN DLLE RA Sbjct: 41 CYFTNGTEKVHLLVRFIFNLEEYLHFDSDLGMFVALTELGEPDADQWNKRLDLLETSRAA 100 Query: 345 VDTYCRHNFRILDTFLVPRRAEPTVTVYPAKTQPLQLHNLLVCSVTWFYPGHVEVMWLQN 524 V+ CR +++ F V R P VTVYP +T LQ HNLL+CSVT FYPG + V W +N Sbjct: 101 VNMVCRQKYKLGAPFTVERNVPPEVTVYPERTPLLQQHNLLLCSVTGFYPGDISVKWFRN 160 Query: 525 GHQEAASVVSTGLIPNGYWTFQTLVMLETVP 617 G +E + V+STGL+ NG WTFQT VMLE +P Sbjct: 161 GQEERSGVMSTGLVRNGDWTFQTTVMLEMIP 191 Score = 26.6 bits (57), Expect(2) = 1e-43 Identities = 8/18 (44%), Positives = 14/18 (77%) Frame = +1 Query: 604 LKQFPRIGEVFSCLL*HP 657 L+ P +G+++SCL+ HP Sbjct: 187 LEMIPELGDIYSCLVEHP 204 >ref|NP_996988.1| histocompatibility 2, class II antigen A, beta 1 [Mus musculus] Length = 265 Score = 173 bits (438), Expect = 3e-43 Identities = 90/182 (49%), Positives = 115/182 (63%), Gaps = 1/182 (0%) Frame = +3 Query: 165 CHFFYGTERVRLLERQYYNGEEFLRFYSDVG*YRAVTELGRPDANDWNSLKDLLEQRRAE 344 C+F GT+R+R + R YN EE++R+ SDVG +RAVTELGRPDA WNS ++LE+ RAE Sbjct: 42 CYFTNGTQRIRYVTRYIYNREEYVRYDSDVGEHRAVTELGRPDAEYWNSQPEILERTRAE 101 Query: 345 VDTYCRHNFRILDTFLVPRRAE-PTVTVYPAKTQPLQLHNLLVCSVTWFYPGHVEVMWLQ 521 +DT CRHN+ +T RR E P V + ++T+ L HN LVCSVT FYP ++V W + Sbjct: 102 LDTVCRHNYEGPETHTSLRRLEQPNVVISLSRTEALNHHNTLVCSVTDFYPTQIKVRWFR 161 Query: 522 NGHQEAASVVSTGLIPNGYWTFQTLVMLETVPSYWRGLLLPIVTPHLNYPFTFECKAPPE 701 NG +E V ST LI NG WTFQ LVMLE P + P L P T E +A E Sbjct: 162 NGQEETVGVSSTQLIRNGDWTFQVLVMLEMTPRRGEVYTCHVEHPSLKSPITVEWRAQSE 221 Query: 702 SS 707 S+ Sbjct: 222 SA 223 Database: RefSeqMP Posted date: Aug 2, 2006 12:58 AM Number of letters in database: 21,768,885 Number of sequences in database: 45,328 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 52,015,009 Number of Sequences: 45328 Number of extensions: 1402213 Number of successful extensions: 4367 Number of sequences better than 1.0e-05: 4 Number of HSP's better than 0.0 without gapping: 3827 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4354 length of database: 21,768,885 effective HSP length: 104 effective length of database: 17,054,773 effective search space used: 4246638477 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)