Animal-Genome cDNA 20060611S-061774


Search to RefSeqSP

BLASTX 2.2.10 [Oct-19-2004]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20060611S-061774
         (782 letters)

Database: RefSeqSP 
           1040 sequences; 434,620 total letters

Searching...done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_999143.1| beta 2-microglobulin [Sus scrofa]                    136   5e-34

>ref|NP_999143.1| beta 2-microglobulin [Sus scrofa]
          Length = 118

 Score =  136 bits (343), Expect = 5e-34
 Identities = 68/94 (72%), Positives = 71/94 (75%)
 Frame = +3

Query: 102 PKVQVY*HHPAEN*EPNYLN*SVSGFHPPQIAIDWLTPRETMNAEQSDLSFRPDWSFYLL 281
           PKVQVY  HPAEN +PNYLN  VSGFHPPQI ID L   E MNAEQSDLSF  DWSFYLL
Sbjct: 25  PKVQVYSRHPAENGKPNYLNCYVSGFHPPQIEIDLLKNGEKMNAEQSDLSFSKDWSFYLL 84

Query: 282 DHTELTPTPVDQYRCRVPHVTLYEPHIVPRDREH 383
            HTE TP  VDQY CRV HVTL +P IV  DR+H
Sbjct: 85  VHTEFTPNAVDQYSCRVKHVTLDKPKIVKWDRDH 118


  Database: RefSeqSP
    Posted date:  Aug 1, 2006  7:14 PM
  Number of letters in database: 434,620
  Number of sequences in database:  1040
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 743,594
Number of Sequences: 1040
Number of extensions: 18957
Number of successful extensions: 63
Number of sequences better than 1.0e-05: 1
Number of HSP's better than  0.0 without gapping: 59
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 62
length of database: 434,620
effective HSP length: 75
effective length of database: 356,620
effective search space used: 65974700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

Search to RefSeqBP

BLASTX 2.2.10 [Oct-19-2004]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20060611S-061774
         (782 letters)

Database: RefSeqBP 
           33,508 sequences; 16,112,626 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_776318.1| beta-2-microglobulin [Bos taurus]                    120   2e-27
Alignment   gi|NP_001012693.1| major histocompatibility complex, class II, ...    48   7e-06
Alignment   gi|NP_001013619.2| histocompatibility complex, class II, DQ alp...    48   7e-06

>ref|NP_776318.1| beta-2-microglobulin [Bos taurus]
          Length = 118

 Score =  120 bits (300), Expect = 2e-27
 Identities = 58/93 (62%), Positives = 65/93 (69%)
 Frame = +3

Query: 102 PKVQVY*HHPAEN*EPNYLN*SVSGFHPPQIAIDWLTPRETMNAEQSDLSFRPDWSFYLL 281
           PK+QVY  HP E+ +PNYLN  V GFHPPQI ID L   E + +EQSDLSF  DWSFYLL
Sbjct: 25  PKIQVYSRHPPEDGKPNYLNCYVYGFHPPQIEIDLLKNGEKIKSEQSDLSFSKDWSFYLL 84

Query: 282 DHTELTPTPVDQYRCRVPHVTLYEPHIVPRDRE 380
            H E TP   DQY CRV HVTL +P IV  DR+
Sbjct: 85  SHAEFTPNSKDQYSCRVKHVTLEQPRIVKWDRD 117


>ref|NP_001012693.1| major histocompatibility complex, class II, DQ alpha [Bos taurus]
          Length = 255

 Score = 48.1 bits (113), Expect = 7e-06
 Identities = 31/91 (34%), Positives = 42/91 (46%), Gaps = 2/91 (2%)
 Frame = +3

Query: 90  TRAAPKVQVY*HHPAEN*EPNYLN*SVSGFHPPQIAIDWLTPRETMNAEQSDLSF--RPD 263
           T   P+V V+   P    +PN L   V    PP I I WL    ++    S+ SF  R D
Sbjct: 109 TNKVPEVTVFSKSPVMLGQPNTLICHVDNIFPPVINITWLRNGHSVTEGVSETSFLIRSD 168

Query: 264 WSFYLLDHTELTPTPVDQYRCRVPHVTLYEP 356
           +SF  + +    P+  D Y C+V H  L EP
Sbjct: 169 YSFLKIKYLAFLPSDDDIYDCKVEHWGLDEP 199


>ref|NP_001013619.2| histocompatibility complex, class II, DQ alpha, type 1 [Bos taurus]
          Length = 255

 Score = 48.1 bits (113), Expect = 7e-06
 Identities = 30/91 (32%), Positives = 43/91 (47%), Gaps = 2/91 (2%)
 Frame = +3

Query: 90  TRAAPKVQVY*HHPAEN*EPNYLN*SVSGFHPPQIAIDWLTPRETMNAEQSDLSF--RPD 263
           T   P+V V+   P    +PN L   V    PP I I WL    ++    S+ SF  + D
Sbjct: 109 TNKVPEVTVFSKSPVMLGQPNTLICHVDNIFPPVINITWLRNGHSVTEGVSETSFLIKSD 168

Query: 264 WSFYLLDHTELTPTPVDQYRCRVPHVTLYEP 356
           +SF  +++    P+  D Y C+V H  L EP
Sbjct: 169 YSFLKINYLTFLPSDDDVYDCKVEHWGLDEP 199


  Database: RefSeqBP
    Posted date:  Aug 1, 2006  7:14 PM
  Number of letters in database: 16,112,626
  Number of sequences in database:  33,508
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 28,018,988
Number of Sequences: 33508
Number of extensions: 740883
Number of successful extensions: 2209
Number of sequences better than 1.0e-05: 3
Number of HSP's better than  0.0 without gapping: 2050
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2190
length of database: 16,112,626
effective HSP length: 99
effective length of database: 12,795,334
effective search space used: 2060048774
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

Search to RefSeqHP

BLASTX 2.2.10 [Oct-19-2004]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20060611S-061774
         (782 letters)

Database: RefSeqHP 
           39,411 sequences; 17,774,539 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_004039.1| beta-2-microglobulin precursor [Homo sapiens]        107   8e-24
Alignment   gi|NP_291032.2| major histocompatibility complex, class II, DP ...    49   4e-06
Alignment   gi|XP_941306.1| PREDICTED: similar to HLA class II histocompati...    48   8e-06
Alignment   gi|XP_941305.1| PREDICTED: similar to HLA class II histocompati...    48   8e-06
Alignment   gi|XP_941304.1| PREDICTED: similar to HLA class II histocompati...    48   8e-06
Alignment   gi|XP_941255.1| PREDICTED: similar to HLA class II histocompati...    48   8e-06
Alignment   gi|XP_941301.1| PREDICTED: similar to HLA class II histocompati...    48   8e-06
Alignment   gi|XP_941221.1| PREDICTED: similar to HLA class II histocompati...    48   8e-06
Alignment   gi|XP_941220.1| PREDICTED: similar to HLA class II histocompati...    48   8e-06
Alignment   gi|XP_941219.1| PREDICTED: similar to HLA class II histocompati...    48   8e-06

>ref|NP_004039.1| beta-2-microglobulin precursor [Homo sapiens]
          Length = 119

 Score =  107 bits (268), Expect = 8e-24
 Identities = 55/94 (58%), Positives = 64/94 (68%), Gaps = 1/94 (1%)
 Frame = +3

Query: 102 PKVQVY*HHPAEN*EPNYLN*SVSGFHPPQIAIDWLTPRETMN-AEQSDLSFRPDWSFYL 278
           PK+QVY  HPAEN + N+LN  VSGFHP  I +D L   E +   E SDLSF  DWSFYL
Sbjct: 25  PKIQVYSRHPAENGKSNFLNCYVSGFHPSDIEVDLLKNGERIEKVEHSDLSFSKDWSFYL 84

Query: 279 LDHTELTPTPVDQYRCRVPHVTLYEPHIVPRDRE 380
           L +TE TPT  D+Y CRV HVTL +P IV  DR+
Sbjct: 85  LYYTEFTPTEKDEYACRVNHVTLSQPKIVKWDRD 118


>ref|NP_291032.2| major histocompatibility complex, class II, DP alpha 1 precursor
           [Homo sapiens]
          Length = 260

 Score = 49.3 bits (116), Expect = 4e-06
 Identities = 29/91 (31%), Positives = 43/91 (47%), Gaps = 2/91 (2%)
 Frame = +3

Query: 90  TRAAPKVQVY*HHPAEN*EPNYLN*SVSGFHPPQIAIDWLTPRETMNAEQSDLSFRP--D 263
           T   P+V V+   P E  +PN L   +  F PP + + WL   E +    ++  F P  D
Sbjct: 114 TNDPPEVTVFPKEPVELGQPNTLICHIDKFFPPVLNVTWLCNGELVTEGVAESLFLPRTD 173

Query: 264 WSFYLLDHTELTPTPVDQYRCRVPHVTLYEP 356
           +SF+   +    P+  D Y CRV H  L +P
Sbjct: 174 YSFHKFHYLTFVPSAEDFYDCRVEHWGLDQP 204


>ref|XP_941306.1| PREDICTED: similar to HLA class II histocompatibility antigen,
           DQ(3) alpha chain precursor (DC-alpha) (HLA-DCA)
           (HLA-DQA1*05011) (HLA-DQA1*0502) isoform 10 [Homo
           sapiens]
          Length = 254

 Score = 48.1 bits (113), Expect = 8e-06
 Identities = 28/91 (30%), Positives = 44/91 (48%), Gaps = 2/91 (2%)
 Frame = +3

Query: 90  TRAAPKVQVY*HHPAEN*EPNYLN*SVSGFHPPQIAIDWLTPRETMNAEQSDLSF--RPD 263
           T   P+V V+   P    +PN L   V    PP + I WL+   ++    S+ SF  + D
Sbjct: 108 TNEVPEVTVFSKSPVTLGQPNILICLVDNIFPPVVNITWLSNGHSVTEGVSETSFLSKSD 167

Query: 264 WSFYLLDHTELTPTPVDQYRCRVPHVTLYEP 356
            SF+ + +  L P+  + Y C+V H  L +P
Sbjct: 168 HSFFKISYLTLLPSAEESYDCKVEHWGLDKP 198


>ref|XP_941305.1| PREDICTED: similar to HLA class II histocompatibility antigen,
           DQ(3) alpha chain precursor (DC-alpha) (HLA-DCA)
           (HLA-DQA1*05011) (HLA-DQA1*0502) isoform 9 [Homo
           sapiens]
          Length = 254

 Score = 48.1 bits (113), Expect = 8e-06
 Identities = 28/91 (30%), Positives = 44/91 (48%), Gaps = 2/91 (2%)
 Frame = +3

Query: 90  TRAAPKVQVY*HHPAEN*EPNYLN*SVSGFHPPQIAIDWLTPRETMNAEQSDLSF--RPD 263
           T   P+V V+   P    +PN L   V    PP + I WL+   ++    S+ SF  + D
Sbjct: 108 TNEVPEVTVFSKSPVTLGQPNILICLVDNIFPPVVNITWLSNGHSVTEGVSETSFLSKSD 167

Query: 264 WSFYLLDHTELTPTPVDQYRCRVPHVTLYEP 356
            SF+ + +  L P+  + Y C+V H  L +P
Sbjct: 168 HSFFKISYLTLLPSAEESYDCKVEHWGLDKP 198


>ref|XP_941304.1| PREDICTED: similar to HLA class II histocompatibility antigen,
           DQ(3) alpha chain precursor (DC-alpha) (HLA-DCA)
           (HLA-DQA1*05011) (HLA-DQA1*0502) isoform 8 [Homo
           sapiens]
          Length = 254

 Score = 48.1 bits (113), Expect = 8e-06
 Identities = 28/91 (30%), Positives = 44/91 (48%), Gaps = 2/91 (2%)
 Frame = +3

Query: 90  TRAAPKVQVY*HHPAEN*EPNYLN*SVSGFHPPQIAIDWLTPRETMNAEQSDLSF--RPD 263
           T   P+V V+   P    +PN L   V    PP + I WL+   ++    S+ SF  + D
Sbjct: 108 TNEVPEVTVFSKSPVTLGQPNILICLVDNIFPPVVNITWLSNGHSVTEGVSETSFLSKSD 167

Query: 264 WSFYLLDHTELTPTPVDQYRCRVPHVTLYEP 356
            SF+ + +  L P+  + Y C+V H  L +P
Sbjct: 168 HSFFKISYLTLLPSAEESYDCKVEHWGLDKP 198


>ref|XP_941255.1| PREDICTED: similar to HLA class II histocompatibility antigen,
           DQ(3) alpha chain precursor (DC-alpha) (HLA-DCA)
           (HLA-DQA1*05011) (HLA-DQA1*0502) isoform 1 [Homo
           sapiens]
          Length = 254

 Score = 48.1 bits (113), Expect = 8e-06
 Identities = 28/91 (30%), Positives = 44/91 (48%), Gaps = 2/91 (2%)
 Frame = +3

Query: 90  TRAAPKVQVY*HHPAEN*EPNYLN*SVSGFHPPQIAIDWLTPRETMNAEQSDLSF--RPD 263
           T   P+V V+   P    +PN L   V    PP + I WL+   ++    S+ SF  + D
Sbjct: 108 TNEVPEVTVFSKSPVTLGQPNILICLVDNIFPPVVNITWLSNGHSVTEGVSETSFLSKSD 167

Query: 264 WSFYLLDHTELTPTPVDQYRCRVPHVTLYEP 356
            SF+ + +  L P+  + Y C+V H  L +P
Sbjct: 168 HSFFKISYLTLLPSAEESYDCKVEHWGLDKP 198


>ref|XP_941301.1| PREDICTED: similar to HLA class II histocompatibility antigen,
           DQ(3) alpha chain precursor (DC-alpha) (HLA-DCA)
           (HLA-DQA1*05011) (HLA-DQA1*0502) isoform 5 [Homo
           sapiens]
          Length = 212

 Score = 48.1 bits (113), Expect = 8e-06
 Identities = 28/91 (30%), Positives = 44/91 (48%), Gaps = 2/91 (2%)
 Frame = +3

Query: 90  TRAAPKVQVY*HHPAEN*EPNYLN*SVSGFHPPQIAIDWLTPRETMNAEQSDLSF--RPD 263
           T   P+V V+   P    +PN L   V    PP + I WL+   ++    S+ SF  + D
Sbjct: 108 TNEVPEVTVFSKSPVTLGQPNILICLVDNIFPPVVNITWLSNGHSVTEGVSETSFLSKSD 167

Query: 264 WSFYLLDHTELTPTPVDQYRCRVPHVTLYEP 356
            SF+ + +  L P+  + Y C+V H  L +P
Sbjct: 168 HSFFKISYLTLLPSAEESYDCKVEHWGLDKP 198


>ref|XP_941221.1| PREDICTED: similar to HLA class II histocompatibility antigen,
           DQ(3) alpha chain precursor (DC-alpha) (HLA-DCA)
           (HLA-DQA1*05011) (HLA-DQA1*0502) isoform 10 [Homo
           sapiens]
          Length = 254

 Score = 48.1 bits (113), Expect = 8e-06
 Identities = 28/91 (30%), Positives = 44/91 (48%), Gaps = 2/91 (2%)
 Frame = +3

Query: 90  TRAAPKVQVY*HHPAEN*EPNYLN*SVSGFHPPQIAIDWLTPRETMNAEQSDLSF--RPD 263
           T   P+V V+   P    +PN L   V    PP + I WL+   ++    S+ SF  + D
Sbjct: 108 TNEVPEVTVFSKSPVTLGQPNILICLVDNIFPPVVNITWLSNGHSVTEGVSETSFLSKSD 167

Query: 264 WSFYLLDHTELTPTPVDQYRCRVPHVTLYEP 356
            SF+ + +  L P+  + Y C+V H  L +P
Sbjct: 168 HSFFKISYLTLLPSAEESYDCKVEHWGLDKP 198


>ref|XP_941220.1| PREDICTED: similar to HLA class II histocompatibility antigen,
           DQ(3) alpha chain precursor (DC-alpha) (HLA-DCA)
           (HLA-DQA1*05011) (HLA-DQA1*0502) isoform 9 [Homo
           sapiens]
          Length = 254

 Score = 48.1 bits (113), Expect = 8e-06
 Identities = 28/91 (30%), Positives = 44/91 (48%), Gaps = 2/91 (2%)
 Frame = +3

Query: 90  TRAAPKVQVY*HHPAEN*EPNYLN*SVSGFHPPQIAIDWLTPRETMNAEQSDLSF--RPD 263
           T   P+V V+   P    +PN L   V    PP + I WL+   ++    S+ SF  + D
Sbjct: 108 TNEVPEVTVFSKSPVTLGQPNILICLVDNIFPPVVNITWLSNGHSVTEGVSETSFLSKSD 167

Query: 264 WSFYLLDHTELTPTPVDQYRCRVPHVTLYEP 356
            SF+ + +  L P+  + Y C+V H  L +P
Sbjct: 168 HSFFKISYLTLLPSAEESYDCKVEHWGLDKP 198


>ref|XP_941219.1| PREDICTED: similar to HLA class II histocompatibility antigen,
           DQ(3) alpha chain precursor (DC-alpha) (HLA-DCA)
           (HLA-DQA1*05011) (HLA-DQA1*0502) isoform 8 [Homo
           sapiens]
          Length = 254

 Score = 48.1 bits (113), Expect = 8e-06
 Identities = 28/91 (30%), Positives = 44/91 (48%), Gaps = 2/91 (2%)
 Frame = +3

Query: 90  TRAAPKVQVY*HHPAEN*EPNYLN*SVSGFHPPQIAIDWLTPRETMNAEQSDLSF--RPD 263
           T   P+V V+   P    +PN L   V    PP + I WL+   ++    S+ SF  + D
Sbjct: 108 TNEVPEVTVFSKSPVTLGQPNILICLVDNIFPPVVNITWLSNGHSVTEGVSETSFLSKSD 167

Query: 264 WSFYLLDHTELTPTPVDQYRCRVPHVTLYEP 356
            SF+ + +  L P+  + Y C+V H  L +P
Sbjct: 168 HSFFKISYLTLLPSAEESYDCKVEHWGLDKP 198


  Database: RefSeqHP
    Posted date:  Aug 2, 2006 12:57 AM
  Number of letters in database: 17,774,539
  Number of sequences in database:  39,411
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 31,792,332
Number of Sequences: 39411
Number of extensions: 866943
Number of successful extensions: 2629
Number of sequences better than 1.0e-05: 10
Number of HSP's better than  0.0 without gapping: 2165
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2576
length of database: 17,774,539
effective HSP length: 100
effective length of database: 13,833,439
effective search space used: 2213350240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

Search to RefSeqCP

BLASTX 2.2.10 [Oct-19-2004]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20060611S-061774
         (782 letters)

Database: RefSeqCP 
           33,732 sequences; 19,266,565 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|XP_535458.1| PREDICTED: similar to beta-2-microglobulin prec...   122   5e-28
Alignment   gi|XP_850148.1| PREDICTED: similar to beta-2-microglobulin prec...   122   5e-28

>ref|XP_535458.1| PREDICTED: similar to beta-2-microglobulin precursor isoform 2
           [Canis familiaris]
          Length = 125

 Score =  122 bits (305), Expect = 5e-28
 Identities = 58/94 (61%), Positives = 69/94 (73%)
 Frame = +3

Query: 102 PKVQVY*HHPAEN*EPNYLN*SVSGFHPPQIAIDWLTPRETMNAEQSDLSFRPDWSFYLL 281
           PK+QVY  HPAEN +PN+LN  VSGFHPP+I ID L   + M AEQ+DLSF  DW+FYLL
Sbjct: 32  PKIQVYSRHPAENGKPNFLNCYVSGFHPPEIEIDLLKNGKEMKAEQTDLSFSKDWTFYLL 91

Query: 282 DHTELTPTPVDQYRCRVPHVTLYEPHIVPRDREH 383
            HTE TP   D++ CRV HVTL EP IV  DR++
Sbjct: 92  VHTEFTPNEQDEFSCRVKHVTLSEPQIVKWDRDN 125


>ref|XP_850148.1| PREDICTED: similar to beta-2-microglobulin precursor isoform 3
           [Canis familiaris]
          Length = 125

 Score =  122 bits (305), Expect = 5e-28
 Identities = 58/94 (61%), Positives = 69/94 (73%)
 Frame = +3

Query: 102 PKVQVY*HHPAEN*EPNYLN*SVSGFHPPQIAIDWLTPRETMNAEQSDLSFRPDWSFYLL 281
           PK+QVY  HPAEN +PN+LN  VSGFHPP+I ID L   + M AEQ+DLSF  DW+FYLL
Sbjct: 32  PKIQVYSRHPAENGKPNFLNCYVSGFHPPEIEIDLLKNGKEMKAEQTDLSFSKDWTFYLL 91

Query: 282 DHTELTPTPVDQYRCRVPHVTLYEPHIVPRDREH 383
            HTE TP   D++ CRV HVTL EP IV  DR++
Sbjct: 92  VHTEFTPNEQDEFSCRVKHVTLSEPQIVKWDRDN 125


  Database: RefSeqCP
    Posted date:  Aug 1, 2006  9:25 PM
  Number of letters in database: 19,266,565
  Number of sequences in database:  33,732
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 32,918,538
Number of Sequences: 33732
Number of extensions: 869088
Number of successful extensions: 2423
Number of sequences better than 1.0e-05: 2
Number of HSP's better than  0.0 without gapping: 2233
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2413
length of database: 19,266,565
effective HSP length: 101
effective length of database: 15,859,633
effective search space used: 2521681647
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

Search to RefSeqMP

BLASTX 2.2.10 [Oct-19-2004]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 20060611S-061774
         (782 letters)

Database: RefSeqMP 
           45,328 sequences; 21,768,885 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Alignment   gi|NP_033865.2| beta-2-microglobulin [Mus musculus]                   98   8e-21

>ref|NP_033865.2| beta-2-microglobulin [Mus musculus]
          Length = 119

 Score = 98.2 bits (243), Expect = 8e-21
 Identities = 48/94 (51%), Positives = 59/94 (62%), Gaps = 1/94 (1%)
 Frame = +3

Query: 102 PKVQVY*HHPAEN*EPNYLN*SVSGFHPPQIAIDWL-TPRETMNAEQSDLSFRPDWSFYL 278
           P++QVY  HP EN +PN LN  V+ FHPP I I  L   ++    E SD+SF  DWSFY+
Sbjct: 25  PQIQVYSRHPPENGKPNILNCYVTQFHPPHIEIQMLKNGKKIPKVEMSDMSFSKDWSFYI 84

Query: 279 LDHTELTPTPVDQYRCRVPHVTLYEPHIVPRDRE 380
           L HTE TPT  D Y CRV H ++ EP  V  DR+
Sbjct: 85  LAHTEFTPTETDTYACRVKHASMAEPKTVYWDRD 118


  Database: RefSeqMP
    Posted date:  Aug 2, 2006 12:58 AM
  Number of letters in database: 21,768,885
  Number of sequences in database:  45,328
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 37,454,302
Number of Sequences: 45328
Number of extensions: 979673
Number of successful extensions: 3049
Number of sequences better than 1.0e-05: 1
Number of HSP's better than  0.0 without gapping: 2727
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3039
length of database: 21,768,885
effective HSP length: 101
effective length of database: 17,190,757
effective search space used: 2733330363
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)