Search to RefSeqBP_Rel44
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20070806C-000811
(1284 letters)
Database: RefSeq44_BP.fasta
33,615 sequences; 18,071,151 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001098911.1| abhydrolase domain-containing protein 14B [B... 280 2e-79
Alignment gi|XP_002697113.1| PREDICTED: abhydrolase domain containing 14A... 105 1e-22
Alignment gi|XP_593087.3| PREDICTED: abhydrolase domain containing 14A is... 105 1e-22
>ref|NP_001098911.1| abhydrolase domain-containing protein 14B [Bos taurus].
Length = 210
Score = 280 bits (715), Expect(2) = 2e-79
Identities = 149/185 (80%), Positives = 155/185 (83%), Gaps = 3/185 (1%)
Frame = +2
Query: 149 GRPARFSVLLLQGKPSPSKPENWASLAACTR--RPPICASPRISPGLGRSKEA-TPAPIG 319
G+ ARFSVLLL G S E W +L R + A PGLGRSKEA PAPIG
Sbjct: 28 GQAARFSVLLLHGIRFSS--ETWQNLGTLHRLAQAGYRAVAIDLPGLGRSKEAKAPAPIG 85
Query: 320 ELVPSSFLAAVVDALDLGPPVVVSPSLSGMYSLLFLTAPDSQLRGYVPVAPICTDKINAA 499
ELVPSSFLAAVVDALDLGPPVV+SPSLSGMYSL FLTAP SQLRGYVPVAPICTDKINAA
Sbjct: 86 ELVPSSFLAAVVDALDLGPPVVISPSLSGMYSLPFLTAPGSQLRGYVPVAPICTDKINAA 145
Query: 500 DYARVKTSVLIVYGDQDPMGQTSFEHLKQLPNHRVLVMEGAGHPCYLDKPEQWHTGLLDF 679
DYARVK SVLIVYGDQDPMGQTSFEHLKQLPNHRVLVMEGAGHPCYLDKPE+WHTGLLDF
Sbjct: 146 DYARVKASVLIVYGDQDPMGQTSFEHLKQLPNHRVLVMEGAGHPCYLDKPEEWHTGLLDF 205
Query: 680 LKGLA 694
L+GLA
Sbjct: 206 LQGLA 210
Score = 36.2 bits (82), Expect(2) = 2e-79
Identities = 17/23 (73%), Positives = 19/23 (82%)
Frame = +3
Query: 66 MAGVEQHEGTIQVQGQSPFLQKA 134
MAGVEQ EG IQVQGQS F ++A
Sbjct: 1 MAGVEQREGAIQVQGQSLFFREA 23
>ref|XP_002697113.1| PREDICTED: abhydrolase domain containing 14A [Bos taurus].
Length = 307
Score = 105 bits (261), Expect = 1e-22
Identities = 69/182 (37%), Positives = 94/182 (51%), Gaps = 2/182 (1%)
Frame = +2
Query: 152 RPARFSVLLLQGKPSPSKP-ENWASLAACTRRPPICASPRISPGLGRSKEATPAPIGELV 328
R R V+LL GK S+ E +L +R + + PG G S + A E
Sbjct: 127 RAHRVDVVLLHGKAFSSRTWEQLGTLQLLAQRGYRAVALDL-PGFGNSAPSKEAST-EAG 184
Query: 329 PSSFLAAVVDALDLGPPVVVSPSLSGMYSLLFLTAPDSQLRGYVPVAPICTDKINAADYA 508
+ L V+ L++ V+VSPSLSG Y+L FL QLRG+VP+AP T +
Sbjct: 185 RAELLERVLQDLNVQNAVLVSPSLSGRYALPFLMRGHHQLRGFVPIAPASTQNYTQEQFQ 244
Query: 509 RVKTSVLIVYGDQD-PMGQTSFEHLKQLPNHRVLVMEGAGHPCYLDKPEQWHTGLLDFLK 685
VKT LI+YG+ D + + S L+ LPNH + + AGH CYL KP+ +H LL FL
Sbjct: 245 AVKTPTLILYGELDRTLARESLRQLRHLPNHATVKLRNAGHACYLHKPQDFHLELLAFLD 304
Query: 686 GL 691
L
Sbjct: 305 HL 306
>ref|XP_593087.3| PREDICTED: abhydrolase domain containing 14A isoform 1 [Bos
taurus].
Length = 309
Score = 105 bits (261), Expect = 1e-22
Identities = 69/182 (37%), Positives = 94/182 (51%), Gaps = 2/182 (1%)
Frame = +2
Query: 152 RPARFSVLLLQGKPSPSKP-ENWASLAACTRRPPICASPRISPGLGRSKEATPAPIGELV 328
R R V+LL GK S+ E +L +R + + PG G S + A E
Sbjct: 129 RAHRVDVVLLHGKAFSSRTWEQLGTLQLLAQRGYRAVALDL-PGFGNSAPSKEAST-EAG 186
Query: 329 PSSFLAAVVDALDLGPPVVVSPSLSGMYSLLFLTAPDSQLRGYVPVAPICTDKINAADYA 508
+ L V+ L++ V+VSPSLSG Y+L FL QLRG+VP+AP T +
Sbjct: 187 RAELLERVLQDLNVQNAVLVSPSLSGRYALPFLMRGHHQLRGFVPIAPASTQNYTQEQFQ 246
Query: 509 RVKTSVLIVYGDQD-PMGQTSFEHLKQLPNHRVLVMEGAGHPCYLDKPEQWHTGLLDFLK 685
VKT LI+YG+ D + + S L+ LPNH + + AGH CYL KP+ +H LL FL
Sbjct: 247 AVKTPTLILYGELDRTLARESLRQLRHLPNHATVKLRNAGHACYLHKPQDFHLELLAFLD 306
Query: 686 GL 691
L
Sbjct: 307 HL 308
Database: RefSeq44_BP.fasta
Posted date: Nov 15, 2010 4:36 PM
Number of letters in database: 18,071,151
Number of sequences in database: 33,615
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33615
Number of Hits to DB: 61,334,341
Number of extensions: 2088957
Number of successful extensions: 11103
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 10965
Number of HSP's successfully gapped: 4
Length of query: 428
Length of database: 18,071,151
Length adjustment: 105
Effective length of query: 323
Effective length of database: 14,541,576
Effective search space: 4696929048
Effective search space used: 4696929048
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqCP_Rel44
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20070806C-000811
(1284 letters)
Database: RefSeq44_CP.fasta
33,359 sequences; 18,921,627 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_541860.2| PREDICTED: similar to Y55F3AM.10 [Canis familia... 276 3e-74
Alignment gi|XP_541859.2| PREDICTED: similar to abhydrolase domain contai... 103 5e-22
>ref|XP_541860.2| PREDICTED: similar to Y55F3AM.10 [Canis familiaris].
Length = 300
Score = 276 bits (706), Expect = 3e-74
Identities = 159/236 (67%), Positives = 168/236 (71%), Gaps = 5/236 (2%)
Frame = +2
Query: 2 HSPASYLREPTHFPRHFT--SCRYXXXXXXXXXXXXXXXEPFSPKGRRLAVGRPARFSVL 175
+SPAS REPT PR FT + F +GR G+ A FSVL
Sbjct: 68 NSPASNPREPTQLPRCFTRTAAGMAGVEQQEGTIQVQGQSLFFREGRP-GGGQAASFSVL 126
Query: 176 LLQGKPSPSKPENWASLAACTR--RPPICASPRISPGLGRSKEAT-PAPIGELVPSSFLA 346
LL G S E W L + + A PGLGRSKEA PAPIGELVPSSFLA
Sbjct: 127 LLHGIRFSS--ETWQKLGTLHKLAQAGYRAVAIDLPGLGRSKEAVAPAPIGELVPSSFLA 184
Query: 347 AVVDALDLGPPVVVSPSLSGMYSLLFLTAPDSQLRGYVPVAPICTDKINAADYARVKTSV 526
AVVDALDLG PVV+SPSLSGMYSL FLTAP SQLRGYVPVAPICTDKINAADYA VKTS
Sbjct: 185 AVVDALDLGSPVVISPSLSGMYSLPFLTAPGSQLRGYVPVAPICTDKINAADYASVKTST 244
Query: 527 LIVYGDQDPMGQTSFEHLKQLPNHRVLVMEGAGHPCYLDKPEQWHTGLLDFLKGLA 694
LIVYGDQDPMG TSFEHLKQLPNHRVLVMEGAGHPCYLDKPE+WHTGLLDFL+GLA
Sbjct: 245 LIVYGDQDPMGLTSFEHLKQLPNHRVLVMEGAGHPCYLDKPEEWHTGLLDFLQGLA 300
>ref|XP_541859.2| PREDICTED: similar to abhydrolase domain containing 14A [Canis
familiaris].
Length = 354
Score = 103 bits (256), Expect = 5e-22
Identities = 70/186 (37%), Positives = 96/186 (51%), Gaps = 2/186 (1%)
Frame = +2
Query: 140 LAVGRPARFSVLLLQGKPSPSKP-ENWASLAACTRRPPICASPRISPGLGRSKEATPAPI 316
L + R R V+LL GK S E +L +R + + PG G S + A
Sbjct: 170 LPLHRARRVEVVLLHGKAFNSHTWEQLGTLQLLAQRGYRAVALDL-PGFGNSAPSKEANT 228
Query: 317 GELVPSSFLAAVVDALDLGPPVVVSPSLSGMYSLLFLTAPDSQLRGYVPVAPICTDKINA 496
E + L V+ L++ ++VSPSLSG Y+L FL QLRG+VP+AP T
Sbjct: 229 -EAGRAELLERVLRDLEVHNAILVSPSLSGRYALPFLIQGHHQLRGFVPIAPASTQNYTQ 287
Query: 497 ADYARVKTSVLIVYGDQDP-MGQTSFEHLKQLPNHRVLVMEGAGHPCYLDKPEQWHTGLL 673
+ VKT LI+YG+ D + + S L+ LPNH V+ + AGH CYL KP+ +H LL
Sbjct: 288 EQFWAVKTPTLILYGELDRILARESLRQLRHLPNHSVVKLRDAGHACYLHKPQDFHLVLL 347
Query: 674 DFLKGL 691
FL L
Sbjct: 348 AFLDHL 353
Database: RefSeq44_CP.fasta
Posted date: Nov 15, 2010 4:36 PM
Number of letters in database: 18,921,627
Number of sequences in database: 33,359
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33359
Number of Hits to DB: 62,496,606
Number of extensions: 2095391
Number of successful extensions: 11080
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 10982
Number of HSP's successfully gapped: 2
Length of query: 428
Length of database: 18,921,627
Length adjustment: 106
Effective length of query: 322
Effective length of database: 15,385,573
Effective search space: 4954154506
Effective search space used: 4954154506
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel44
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20070806C-000811
(1284 letters)
Database: RefSeq44_HP.fasta
33,950 sequences; 18,324,212 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001139786.1| abhydrolase domain-containing protein 14B [H... 257 9e-72
Alignment gi|NP_116139.1| abhydrolase domain-containing protein 14B [Homo... 257 9e-72
Alignment gi|NP_056222.2| abhydrolase domain-containing protein 14A [Homo... 100 4e-21
>ref|NP_001139786.1| abhydrolase domain-containing protein 14B [Homo sapiens].
Length = 210
Score = 257 bits (657), Expect(2) = 9e-72
Identities = 136/181 (75%), Positives = 146/181 (80%), Gaps = 3/181 (1%)
Frame = +2
Query: 158 ARFSVLLLQGKPSPSKPENWASLAACTR--RPPICASPRISPGLGRSKEAT-PAPIGELV 328
ARFSVLLL G S E W +L R + A PGLG SKEA PAPIGEL
Sbjct: 31 ARFSVLLLHGIRFSS--ETWQNLGTLHRLAQAGYRAVAIDLPGLGHSKEAAAPAPIGELA 88
Query: 329 PSSFLAAVVDALDLGPPVVVSPSLSGMYSLLFLTAPDSQLRGYVPVAPICTDKINAADYA 508
P SFLAAVVDAL+LGPPVV+SPSLSGMYSL FLTAP SQL G+VPVAPICTDKINAA+YA
Sbjct: 89 PGSFLAAVVDALELGPPVVISPSLSGMYSLPFLTAPGSQLPGFVPVAPICTDKINAANYA 148
Query: 509 RVKTSVLIVYGDQDPMGQTSFEHLKQLPNHRVLVMEGAGHPCYLDKPEQWHTGLLDFLKG 688
VKT LIVYGDQDPMGQTSFEHLKQLPNHRVL+M+GAGHPCYLDKPE+WHTGLLDFL+G
Sbjct: 149 SVKTPALIVYGDQDPMGQTSFEHLKQLPNHRVLIMKGAGHPCYLDKPEEWHTGLLDFLQG 208
Query: 689 L 691
L
Sbjct: 209 L 209
Score = 32.7 bits (73), Expect(2) = 9e-72
Identities = 15/22 (68%), Positives = 18/22 (81%)
Frame = +3
Query: 69 AGVEQHEGTIQVQGQSPFLQKA 134
A VEQ EGTIQVQGQ+ F ++A
Sbjct: 3 ASVEQREGTIQVQGQALFFREA 24
>ref|NP_116139.1| abhydrolase domain-containing protein 14B [Homo sapiens].
Length = 210
Score = 257 bits (657), Expect(2) = 9e-72
Identities = 136/181 (75%), Positives = 146/181 (80%), Gaps = 3/181 (1%)
Frame = +2
Query: 158 ARFSVLLLQGKPSPSKPENWASLAACTR--RPPICASPRISPGLGRSKEAT-PAPIGELV 328
ARFSVLLL G S E W +L R + A PGLG SKEA PAPIGEL
Sbjct: 31 ARFSVLLLHGIRFSS--ETWQNLGTLHRLAQAGYRAVAIDLPGLGHSKEAAAPAPIGELA 88
Query: 329 PSSFLAAVVDALDLGPPVVVSPSLSGMYSLLFLTAPDSQLRGYVPVAPICTDKINAADYA 508
P SFLAAVVDAL+LGPPVV+SPSLSGMYSL FLTAP SQL G+VPVAPICTDKINAA+YA
Sbjct: 89 PGSFLAAVVDALELGPPVVISPSLSGMYSLPFLTAPGSQLPGFVPVAPICTDKINAANYA 148
Query: 509 RVKTSVLIVYGDQDPMGQTSFEHLKQLPNHRVLVMEGAGHPCYLDKPEQWHTGLLDFLKG 688
VKT LIVYGDQDPMGQTSFEHLKQLPNHRVL+M+GAGHPCYLDKPE+WHTGLLDFL+G
Sbjct: 149 SVKTPALIVYGDQDPMGQTSFEHLKQLPNHRVLIMKGAGHPCYLDKPEEWHTGLLDFLQG 208
Query: 689 L 691
L
Sbjct: 209 L 209
Score = 32.7 bits (73), Expect(2) = 9e-72
Identities = 15/22 (68%), Positives = 18/22 (81%)
Frame = +3
Query: 69 AGVEQHEGTIQVQGQSPFLQKA 134
A VEQ EGTIQVQGQ+ F ++A
Sbjct: 3 ASVEQREGTIQVQGQALFFREA 24
>ref|NP_056222.2| abhydrolase domain-containing protein 14A [Homo sapiens].
Length = 271
Score = 100 bits (248), Expect = 4e-21
Identities = 68/186 (36%), Positives = 96/186 (51%), Gaps = 2/186 (1%)
Frame = +2
Query: 140 LAVGRPARFSVLLLQGKPSPSKP-ENWASLAACTRRPPICASPRISPGLGRSKEATPAPI 316
L + + R V+LL GK S E +L ++R + + PG G S + A
Sbjct: 87 LPLNQAHRVEVVLLHGKAFNSHTWEQLGTLQLLSQRGYRAVALDL-PGFGNSAPSKEAST 145
Query: 317 GELVPSSFLAAVVDALDLGPPVVVSPSLSGMYSLLFLTAPDSQLRGYVPVAPICTDKINA 496
E ++ L + L++ V+VSPSLSG Y+L FL QL G+VP+AP T
Sbjct: 146 -EAGRAALLERALRDLEVQNAVLVSPSLSGHYALPFLMRGHHQLHGFVPIAPTSTQNYTQ 204
Query: 497 ADYARVKTSVLIVYGDQDP-MGQTSFEHLKQLPNHRVLVMEGAGHPCYLDKPEQWHTGLL 673
+ VKT LI+YG+ D + + S L+ LPNH V+ + AGH CYL KP+ +H LL
Sbjct: 205 EQFWAVKTPTLILYGELDHILARESLRQLRHLPNHSVVKLRNAGHACYLHKPQDFHLVLL 264
Query: 674 DFLKGL 691
FL L
Sbjct: 265 AFLDHL 270
Database: RefSeq44_HP.fasta
Posted date: Nov 15, 2010 4:36 PM
Number of letters in database: 18,324,212
Number of sequences in database: 33,950
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33950
Number of Hits to DB: 61,641,802
Number of extensions: 2073396
Number of successful extensions: 10425
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 10253
Number of HSP's successfully gapped: 5
Length of query: 428
Length of database: 18,324,212
Length adjustment: 105
Effective length of query: 323
Effective length of database: 14,759,462
Effective search space: 4767306226
Effective search space used: 4767306226
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel44
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20070806C-000811
(1284 letters)
Database: RefSeq44_MP.fasta
29,866 sequences; 15,452,059 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_083907.3| abhydrolase domain-containing protein 14B [Mus ... 255 3e-72
Alignment gi|NP_666031.2| abhydrolase domain-containing protein 14A isofo... 100 2e-21
Alignment gi|NP_001103741.1| abhydrolase domain-containing protein 14A is... 100 2e-21
Alignment gi|NP_001103742.1| abhydrolase domain-containing protein 14A is... 99 5e-21
>ref|NP_083907.3| abhydrolase domain-containing protein 14B [Mus musculus].
Length = 210
Score = 255 bits (652), Expect(2) = 3e-72
Identities = 134/185 (72%), Positives = 144/185 (77%), Gaps = 3/185 (1%)
Frame = +2
Query: 149 GRPARFSVLLLQGKPSPSKPENWASLAACTR--RPPICASPRISPGLGRSKEAT-PAPIG 319
G+P RFSVLLL G S E W +L R A PGLGRSKEA PAPIG
Sbjct: 28 GQPVRFSVLLLHGIRFSS--ETWQNLGTLQRLAEAGYRAVAIDLPGLGRSKEAAAPAPIG 85
Query: 320 ELVPSSFLAAVVDALDLGPPVVVSPSLSGMYSLLFLTAPDSQLRGYVPVAPICTDKINAA 499
E P SFLAAVVD L+LGPPVV+SPSLSGMYSL FL AP SQLRG+VPVAPICTDKINA
Sbjct: 86 EPAPGSFLAAVVDTLELGPPVVISPSLSGMYSLPFLVAPGSQLRGFVPVAPICTDKINAV 145
Query: 500 DYARVKTSVLIVYGDQDPMGQTSFEHLKQLPNHRVLVMEGAGHPCYLDKPEQWHTGLLDF 679
DYA VKT LIVYGDQDPMG +SF+HLKQLPNHRVLVMEGAGHPCYLDKP++WH GLLDF
Sbjct: 146 DYASVKTPALIVYGDQDPMGSSSFQHLKQLPNHRVLVMEGAGHPCYLDKPDEWHKGLLDF 205
Query: 680 LKGLA 694
L+GLA
Sbjct: 206 LQGLA 210
Score = 35.8 bits (81), Expect(2) = 3e-72
Identities = 15/22 (68%), Positives = 20/22 (90%)
Frame = +3
Query: 66 MAGVEQHEGTIQVQGQSPFLQK 131
MAGV+QHEGTI+VQGQ+ F ++
Sbjct: 1 MAGVDQHEGTIKVQGQNLFFRE 22
>ref|NP_666031.2| abhydrolase domain-containing protein 14A isoform a [Mus musculus].
Length = 248
Score = 100 bits (250), Expect = 2e-21
Identities = 60/142 (42%), Positives = 76/142 (53%), Gaps = 3/142 (2%)
Frame = +2
Query: 275 PGLGRS--KEATPAPIGELVPSSFLAAVVDALDLGPPVVVSPSLSGMYSLLFLTAPDSQL 448
PG G S E G + L V L + V+VSPSLSG Y+L FL QL
Sbjct: 109 PGFGNSAPSEEVSTEAGRV---ELLERVFQDLQVQNTVLVSPSLSGSYALPFLMQNHHQL 165
Query: 449 RGYVPVAPICTDKINAADYARVKTSVLIVYGDQD-PMGQTSFEHLKQLPNHRVLVMEGAG 625
RG+VP+AP T + VKT LI+YG+ D + + S + L+ LPNH V+ + AG
Sbjct: 166 RGFVPIAPTSTRNYAQEQFGAVKTPTLILYGELDHTLARESLQQLRHLPNHSVVKLHDAG 225
Query: 626 HPCYLDKPEQWHTGLLDFLKGL 691
H CYL KPE +H LL FL L
Sbjct: 226 HACYLHKPEAFHLALLAFLDHL 247
>ref|NP_001103741.1| abhydrolase domain-containing protein 14A isoform a [Mus musculus].
Length = 248
Score = 100 bits (250), Expect = 2e-21
Identities = 60/142 (42%), Positives = 76/142 (53%), Gaps = 3/142 (2%)
Frame = +2
Query: 275 PGLGRS--KEATPAPIGELVPSSFLAAVVDALDLGPPVVVSPSLSGMYSLLFLTAPDSQL 448
PG G S E G + L V L + V+VSPSLSG Y+L FL QL
Sbjct: 109 PGFGNSAPSEEVSTEAGRV---ELLERVFQDLQVQNTVLVSPSLSGSYALPFLMQNHHQL 165
Query: 449 RGYVPVAPICTDKINAADYARVKTSVLIVYGDQD-PMGQTSFEHLKQLPNHRVLVMEGAG 625
RG+VP+AP T + VKT LI+YG+ D + + S + L+ LPNH V+ + AG
Sbjct: 166 RGFVPIAPTSTRNYAQEQFGAVKTPTLILYGELDHTLARESLQQLRHLPNHSVVKLHDAG 225
Query: 626 HPCYLDKPEQWHTGLLDFLKGL 691
H CYL KPE +H LL FL L
Sbjct: 226 HACYLHKPEAFHLALLAFLDHL 247
>ref|NP_001103742.1| abhydrolase domain-containing protein 14A isoform b [Mus musculus].
Length = 266
Score = 99.4 bits (246), Expect = 5e-21
Identities = 54/118 (45%), Positives = 69/118 (58%), Gaps = 1/118 (0%)
Frame = +2
Query: 341 LAAVVDALDLGPPVVVSPSLSGMYSLLFLTAPDSQLRGYVPVAPICTDKINAADYARVKT 520
L V L + V+VSPSLSG Y+L FL QLRG+VP+AP T + VKT
Sbjct: 148 LERVFQDLQVQNTVLVSPSLSGSYALPFLMQNHHQLRGFVPIAPTSTRNYAQEQFGAVKT 207
Query: 521 SVLIVYGDQD-PMGQTSFEHLKQLPNHRVLVMEGAGHPCYLDKPEQWHTGLLDFLKGL 691
LI+YG+ D + + S + L+ LPNH V+ + AGH CYL KPE +H LL FL L
Sbjct: 208 PTLILYGELDHTLARESLQQLRHLPNHSVVKLHDAGHACYLHKPEAFHLALLAFLDHL 265
Database: RefSeq44_MP.fasta
Posted date: Nov 15, 2010 4:36 PM
Number of letters in database: 15,452,059
Number of sequences in database: 29,866
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 29866
Number of Hits to DB: 51,027,806
Number of extensions: 1675818
Number of successful extensions: 8117
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 7962
Number of HSP's successfully gapped: 5
Length of query: 428
Length of database: 15,452,059
Length adjustment: 104
Effective length of query: 324
Effective length of database: 12,345,995
Effective search space: 4000102380
Effective search space used: 4000102380
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel44
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20070806C-000811
(1284 letters)
Database: RefSeq44_SP.fasta
20,576 sequences; 9,542,844 total letters
Searching..................................................done
***** No hits found ******
Database: RefSeq44_SP.fasta
Posted date: Nov 15, 2010 4:36 PM
Number of letters in database: 9,542,844
Number of sequences in database: 20,576
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 20576
Number of Hits to DB: 32,735,719
Number of extensions: 1121515
Number of successful extensions: 5813
Number of sequences better than 1.0e-05: 0
Number of HSP's gapped: 5755
Number of HSP's successfully gapped: 0
Length of query: 428
Length of database: 9,542,844
Length adjustment: 101
Effective length of query: 327
Effective length of database: 7,464,668
Effective search space: 2440946436
Effective search space used: 2440946436
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)