Search to RefSeqBP_Rel44
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20070806C-001148
(1408 letters)
Database: RefSeq44_BP.fasta
33,615 sequences; 18,071,151 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001030503.1| secretory carrier-associated membrane protei... 437 e-122
Alignment gi|NP_001069522.1| secretory carrier-associated membrane protei... 218 8e-57
Alignment gi|NP_001095640.1| secretory carrier-associated membrane protei... 217 2e-56
Alignment gi|NP_001019737.1| secretory carrier-associated membrane protei... 148 1e-35
Alignment gi|NP_001160037.1| secretory carrier-associated membrane protei... 147 2e-35
>ref|NP_001030503.1| secretory carrier-associated membrane protein 3 [Bos taurus].
Length = 347
Score = 437 bits (1123), Expect = e-122
Identities = 223/321 (69%), Positives = 226/321 (70%)
Frame = +2
Query: 233 DGGNPFAEPGELDNPFQDPAVIQHRPSPQYATLDVYNPFETRXXXXXXXXXXXXXXXXXX 412
DGGNPFAEPGELDNPFQDPAVIQHRPS YATLDVYNPFETR
Sbjct: 6 DGGNPFAEPGELDNPFQDPAVIQHRPSTHYATLDVYNPFETREPPPSYEPPAPVPIAPPS 65
Query: 413 XXXLQSSRKLSPTEPKNYGSYXXXXXXXXXXXXXXXXXXELNRKAEELDRRERELQHAAL 592
LQSSRKLSPTEPKNYGSY ELNRKAEELDRREREL+HAAL
Sbjct: 66 APPLQSSRKLSPTEPKNYGSYSTQASTAAATAELLKKQEELNRKAEELDRRERELRHAAL 125
Query: 593 GGTATRQNNWPPLPSFCPVQPCFFQDISMEIPQEFQKTVSTMYYLWMCSTXXXXXXXXXX 772
G TATRQNNWPPLPSFCPVQPCFFQDISMEIPQEFQKTVSTMYYLWMCST
Sbjct: 126 GSTATRQNNWPPLPSFCPVQPCFFQDISMEIPQEFQKTVSTMYYLWMCSTLALLLNFLAC 185
Query: 773 XXSFCVETNTGSGFGLSILWILLFTPCSFVCWYRPMYKAXXXXXXXXXXXXXXXXXVQDV 952
SFCVET+ GSGFGLSILWILLFTPCSFVCWYRPMYKA VQDV
Sbjct: 186 LASFCVETSNGSGFGLSILWILLFTPCSFVCWYRPMYKAFRSDSSFNFFVFFFIFFVQDV 245
Query: 953 LYVLQAIGIPGWGFSGWISXXXXXXXXXXXXXXXXXXXXXXXGIAVLGIVMLKRIHSLYR 1132
L+VLQAIGIPGWGFSGWIS GIAVLGIVMLKRIHSLYR
Sbjct: 246 LFVLQAIGIPGWGFSGWISALVVLKVNTAVAVLMLLVALFFTGIAVLGIVMLKRIHSLYR 305
Query: 1133 RTGASFQKAQQEFAAGVFSNP 1195
RTGASFQKAQQEFAAGVFSNP
Sbjct: 306 RTGASFQKAQQEFAAGVFSNP 326
>ref|NP_001069522.1| secretory carrier-associated membrane protein 1 [Bos taurus].
Length = 354
Score = 218 bits (556), Expect = 8e-57
Identities = 134/319 (42%), Positives = 158/319 (49%), Gaps = 2/319 (0%)
Frame = +2
Query: 242 NPFAEPGELDNPFQDPAVIQ-HRPSPQYATLDVYNPFETRXXXXXXXXXXXXXXXXXXXX 418
NPFA+P +L+NPF+DP+V Q R P LD YNPF
Sbjct: 7 NPFADP-DLNNPFKDPSVTQVTRNVPP--GLDEYNPFSDSRTPPPGNVKMPNVPSTQPAI 63
Query: 419 XLQSSRKLSPTEPKNYGSYXXXXXXXXXXXXXXXXXXE-LNRKAEELDRRERELQHAALG 595
+ PTE + +Y E L RKA ELDRRERE+Q+ +
Sbjct: 64 -------MKPTE--EHPAYTQIAKEHALAQAELLKRQEELERKAAELDRREREMQNLSQH 114
Query: 596 GTATRQNNWPPLPSFCPVQPCFFQDISMEIPQEFQKTVSTMYYLWMCSTXXXXXXXXXXX 775
G R+NNWPPLP PV PCF+QD S++IP EFQKTV MYYLWM
Sbjct: 115 G---RKNNWPPLPDNFPVGPCFYQDFSVDIPVEFQKTVKIMYYLWMFHAVTLFLNIFGCL 171
Query: 776 XSFCVETNTGSGFGLSILWILLFTPCSFVCWYRPMYKAXXXXXXXXXXXXXXXXXVQDVL 955
FCV+ G FGLSILW LLFTPCSFVCWYRP+Y A Q +
Sbjct: 172 AWFCVDPPRGVDFGLSILWFLLFTPCSFVCWYRPLYGAFRSDSSFRFFVFFFVYICQFAV 231
Query: 956 YVLQAIGIPGWGFSGWISXXXXXXXXXXXXXXXXXXXXXXXGIAVLGIVMLKRIHSLYRR 1135
+VLQA G WG GWIS AV+ +VM K++H LYR
Sbjct: 232 HVLQAAGFHNWGNCGWISSLTGLNKSIPVGIMMIIIAALFTASAVISLVMFKKVHGLYRT 291
Query: 1136 TGASFQKAQQEFAAGVFSN 1192
TGASF+KAQQEFA GV SN
Sbjct: 292 TGASFEKAQQEFATGVMSN 310
>ref|NP_001095640.1| secretory carrier-associated membrane protein 2 [Bos taurus].
Length = 328
Score = 217 bits (552), Expect = 2e-56
Identities = 125/317 (39%), Positives = 166/317 (52%)
Frame = +2
Query: 242 NPFAEPGELDNPFQDPAVIQHRPSPQYATLDVYNPFETRXXXXXXXXXXXXXXXXXXXXX 421
NPFA+P ++ NPFQDP+V Q +PQ L +NPF
Sbjct: 7 NPFADPVDV-NPFQDPSVTQLTNAPQ-GGLAEFNPFSETNAATTVPVSQMPGASQPAV-- 62
Query: 422 LQSSRKLSPTEPKNYGSYXXXXXXXXXXXXXXXXXXELNRKAEELDRRERELQHAALGGT 601
LQ S + PT+P EL+RKA EL+R+ERELQ+ +
Sbjct: 63 LQPS--VEPTQPTPQA------VASAAQASLLRQQEELDRKAAELERKERELQNT-VANL 113
Query: 602 ATRQNNWPPLPSFCPVQPCFFQDISMEIPQEFQKTVSTMYYLWMCSTXXXXXXXXXXXXS 781
R+NNWPPLP +CPV+PCF+QD S EIP ++Q+ +YYLWM +
Sbjct: 114 HVRENNWPPLPVWCPVKPCFYQDFSTEIPADYQRICKMLYYLWMLHSVTLFLNLLACLAW 173
Query: 782 FCVETNTGSGFGLSILWILLFTPCSFVCWYRPMYKAXXXXXXXXXXXXXXXXXVQDVLYV 961
F V+T+ G FGLSILW ++FTPC+F+CWYRP+YKA Q +Y+
Sbjct: 174 FLVDTSRGVDFGLSILWFVIFTPCAFLCWYRPIYKAFRSDNSFSFFVFFFVFFCQIGIYI 233
Query: 962 LQAIGIPGWGFSGWISXXXXXXXXXXXXXXXXXXXXXXXGIAVLGIVMLKRIHSLYRRTG 1141
+Q IGIP G SGWI+ AVL + +LKR+HSLYRRTG
Sbjct: 234 IQLIGIPSLGDSGWIAALSTMKHNLAVSVIMMVVAGFFTLCAVLSLFLLKRVHSLYRRTG 293
Query: 1142 ASFQKAQQEFAAGVFSN 1192
ASFQ+AQ+EF+ G+FS+
Sbjct: 294 ASFQQAQEEFSQGIFSS 310
>ref|NP_001019737.1| secretory carrier-associated membrane protein 4 [Bos taurus].
Length = 230
Score = 148 bits (374), Expect = 1e-35
Identities = 72/198 (36%), Positives = 107/198 (54%), Gaps = 2/198 (1%)
Frame = +2
Query: 608 RQNNWPPLPSFCPVQPCFFQDISMEIPQEFQKTVSTMYYLWM--CSTXXXXXXXXXXXXS 781
++NN+PPLP F P++PCF+Q+ S EIP E Q V +Y LW+ C+T +
Sbjct: 4 KENNFPPLPKFIPLKPCFYQNFSDEIPIEHQVLVKRIYRLWLFYCAT---LGVNLVACLA 60
Query: 782 FCVETNTGSGFGLSILWILLFTPCSFVCWYRPMYKAXXXXXXXXXXXXXXXXXVQDVLYV 961
+ + +G+ FGL++LW+LLF+PC +VCW+RP YKA Q +L +
Sbjct: 61 WWIAGGSGANFGLALLWLLLFSPCGYVCWFRPAYKAFRSDSSFNFMAFFFIFGAQFILTI 120
Query: 962 LQAIGIPGWGFSGWISXXXXXXXXXXXXXXXXXXXXXXXGIAVLGIVMLKRIHSLYRRTG 1141
+QA+G GWG GW++ A + VM+ ++HS+YR TG
Sbjct: 121 IQAVGFSGWGACGWLAAIGFFQTSVGAAVVMLLPAIMFSMSAAMMAVMIMKVHSIYRGTG 180
Query: 1142 ASFQKAQQEFAAGVFSNP 1195
SFQKAQ E++ G + NP
Sbjct: 181 GSFQKAQTEWSTGTWRNP 198
>ref|NP_001160037.1| secretory carrier-associated membrane protein 5 [Bos taurus].
Length = 235
Score = 147 bits (372), Expect = 2e-35
Identities = 68/194 (35%), Positives = 99/194 (51%)
Frame = +2
Query: 614 NNWPPLPSFCPVQPCFFQDISMEIPQEFQKTVSTMYYLWMCSTXXXXXXXXXXXXSFCVE 793
NN+PPLP F P++PCF+QD +IP + +YYLWM ++ ++ +
Sbjct: 6 NNFPPLPKFIPLKPCFYQDFEADIPPQHLSMTKRLYYLWMLNS-VTLAVNLVGCLAWLIG 64
Query: 794 TNTGSGFGLSILWILLFTPCSFVCWYRPMYKAXXXXXXXXXXXXXXXXXVQDVLYVLQAI 973
+ FGL+ LW++LFTPCS+VCW+RP+YKA Q V+ ++QA+
Sbjct: 65 GGGATNFGLAFLWLILFTPCSYVCWFRPIYKAFKTDSSFSFMAFFFTFMAQLVISIIQAV 124
Query: 974 GIPGWGFSGWISXXXXXXXXXXXXXXXXXXXXXXXGIAVLGIVMLKRIHSLYRRTGASFQ 1153
GIPGWG GWI+ +AV + L +H YR +G SF
Sbjct: 125 GIPGWGVCGWIATISFFGTNIGSAVVMLIPTVLFTVMAVFSFIALSMVHKFYRGSGGSFS 184
Query: 1154 KAQQEFAAGVFSNP 1195
KAQ+E+ G + NP
Sbjct: 185 KAQEEWTTGAWKNP 198
Database: RefSeq44_BP.fasta
Posted date: Nov 15, 2010 4:36 PM
Number of letters in database: 18,071,151
Number of sequences in database: 33,615
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33615
Number of Hits to DB: 50,632,764
Number of extensions: 1352365
Number of successful extensions: 5646
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 5606
Number of HSP's successfully gapped: 5
Length of query: 469
Length of database: 18,071,151
Length adjustment: 106
Effective length of query: 363
Effective length of database: 14,507,961
Effective search space: 5266389843
Effective search space used: 5266389843
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqCP_Rel44
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20070806C-001148
(1408 letters)
Database: RefSeq44_CP.fasta
33,359 sequences; 18,921,627 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_850806.1| PREDICTED: similar to secretory carrier membran... 419 e-135
Alignment gi|XP_851948.1| PREDICTED: similar to secretory carrier membran... 435 e-122
Alignment gi|XP_864765.1| PREDICTED: similar to secretory carrier membran... 429 e-120
Alignment gi|XP_864743.1| PREDICTED: similar to secretory carrier membran... 427 e-119
Alignment gi|XP_864783.1| PREDICTED: similar to secretory carrier membran... 393 e-109
Alignment gi|XP_864802.1| PREDICTED: similar to secretory carrier membran... 375 e-104
Alignment gi|XP_864724.1| PREDICTED: similar to secretory carrier membran... 249 3e-66
Alignment gi|XP_859726.1| PREDICTED: similar to Secretory carrier-associa... 226 3e-59
Alignment gi|XP_544777.2| PREDICTED: similar to Secretory carrier-associa... 222 6e-58
Alignment gi|XP_536314.2| PREDICTED: similar to Secretory carrier-associa... 219 5e-57
>ref|XP_850806.1| PREDICTED: similar to secretory carrier membrane protein 3 isoform 1
[Canis familiaris].
Length = 374
Score = 419 bits (1077), Expect(2) = e-135
Identities = 214/321 (66%), Positives = 219/321 (68%)
Frame = +2
Query: 233 DGGNPFAEPGELDNPFQDPAVIQHRPSPQYATLDVYNPFETRXXXXXXXXXXXXXXXXXX 412
DG NPF PG+LDNPFQDPAVIQH+PSPQYATLDVYNPFETR
Sbjct: 6 DGENPFIRPGKLDNPFQDPAVIQHQPSPQYATLDVYNPFETRELPLAYEPPAPAPLPSPS 65
Query: 413 XXXLQSSRKLSPTEPKNYGSYXXXXXXXXXXXXXXXXXXELNRKAEELDRRERELQHAAL 592
LQSSRKLSPTEPKNYGSY ELNRKAEELD RERELQHAAL
Sbjct: 66 APSLQSSRKLSPTEPKNYGSYSTQASAAAATAELLKKPEELNRKAEELDWRERELQHAAL 125
Query: 593 GGTATRQNNWPPLPSFCPVQPCFFQDISMEIPQEFQKTVSTMYYLWMCSTXXXXXXXXXX 772
GGTA RQNNWPPLPSFCPVQPCFFQDISMEIPQEFQKTVSTMYYLWMCST
Sbjct: 126 GGTAARQNNWPPLPSFCPVQPCFFQDISMEIPQEFQKTVSTMYYLWMCSTLALLLNFLAC 185
Query: 773 XXSFCVETNTGSGFGLSILWILLFTPCSFVCWYRPMYKAXXXXXXXXXXXXXXXXXVQDV 952
SFCVET+ GSGFGLSILW+LLFTPCSFVCWYRPMYKA VQDV
Sbjct: 186 LASFCVETSNGSGFGLSILWVLLFTPCSFVCWYRPMYKAFRSNSSFNFFVFFFIFFVQDV 245
Query: 953 LYVLQAIGIPGWGFSGWISXXXXXXXXXXXXXXXXXXXXXXXGIAVLGIVMLKRIHSLYR 1132
L+VLQAIGIPGWGFSGWIS GIAVLGIVMLKRIHSLYR
Sbjct: 246 LFVLQAIGIPGWGFSGWISALVVLKTNTAVAVLMLLVALLFTGIAVLGIVMLKRIHSLYR 305
Query: 1133 RTGASFQKAQQEFAAGVFSNP 1195
RT SFQKAQQEFAAGV P
Sbjct: 306 RTSVSFQKAQQEFAAGVSPQP 326
Score = 82.4 bits (202), Expect(2) = e-135
Identities = 37/48 (77%), Positives = 39/48 (81%)
Frame = +1
Query: 1189 QPCGANCSCQCSRWSCRKCLPGPVTPDWDALALPLEGADLAPIPEVSG 1332
QP GANC CQ SRW CRKCLP P++P DALALPLEGA LAPIPE SG
Sbjct: 325 QPRGANCCCQRSRWRCRKCLPSPISPGRDALALPLEGAQLAPIPEGSG 372
>ref|XP_851948.1| PREDICTED: similar to secretory carrier membrane protein 3 isoform 1
isoform 1 [Canis familiaris].
Length = 347
Score = 435 bits (1119), Expect = e-122
Identities = 222/321 (69%), Positives = 225/321 (70%)
Frame = +2
Query: 233 DGGNPFAEPGELDNPFQDPAVIQHRPSPQYATLDVYNPFETRXXXXXXXXXXXXXXXXXX 412
DG NPFA P ELDNPFQDPAVIQHRPSPQYATLDVYNPFETR
Sbjct: 6 DGENPFAGPSELDNPFQDPAVIQHRPSPQYATLDVYNPFETREPPLAYEPPAPAPLPSPS 65
Query: 413 XXXLQSSRKLSPTEPKNYGSYXXXXXXXXXXXXXXXXXXELNRKAEELDRRERELQHAAL 592
LQSSRKLSPTEPKNYGSY ELNRKAEELDRRERELQHAAL
Sbjct: 66 APSLQSSRKLSPTEPKNYGSYSTQASAAAATAELLKKQEELNRKAEELDRRERELQHAAL 125
Query: 593 GGTATRQNNWPPLPSFCPVQPCFFQDISMEIPQEFQKTVSTMYYLWMCSTXXXXXXXXXX 772
GGTA RQNNWPPLPSFCPVQPCFFQDISMEIPQEFQKTVSTMYYLWMCST
Sbjct: 126 GGTAARQNNWPPLPSFCPVQPCFFQDISMEIPQEFQKTVSTMYYLWMCSTLALLLNFLAC 185
Query: 773 XXSFCVETNTGSGFGLSILWILLFTPCSFVCWYRPMYKAXXXXXXXXXXXXXXXXXVQDV 952
SFCVET+ GSGFGLSILW+LLFTPCSFVCWYRPMYKA VQDV
Sbjct: 186 LASFCVETSNGSGFGLSILWVLLFTPCSFVCWYRPMYKAFRSDSSFNFFVFFFIFFVQDV 245
Query: 953 LYVLQAIGIPGWGFSGWISXXXXXXXXXXXXXXXXXXXXXXXGIAVLGIVMLKRIHSLYR 1132
L+VLQAIGIPGWGFSGWIS GIAVLGIVMLKRIHSLYR
Sbjct: 246 LFVLQAIGIPGWGFSGWISALVVLKTNTAVAVLMLLVALLFTGIAVLGIVMLKRIHSLYR 305
Query: 1133 RTGASFQKAQQEFAAGVFSNP 1195
RTGASFQKAQQEFAAGVFSNP
Sbjct: 306 RTGASFQKAQQEFAAGVFSNP 326
>ref|XP_864765.1| PREDICTED: similar to secretory carrier membrane protein 3 isoform 1
isoform 4 [Canis familiaris].
Length = 347
Score = 429 bits (1103), Expect = e-120
Identities = 220/321 (68%), Positives = 223/321 (69%)
Frame = +2
Query: 233 DGGNPFAEPGELDNPFQDPAVIQHRPSPQYATLDVYNPFETRXXXXXXXXXXXXXXXXXX 412
DG NPFA P ELDNPFQDPAVIQHRPSPQYATLDVYNPFETR
Sbjct: 6 DGENPFAGPSELDNPFQDPAVIQHRPSPQYATLDVYNPFETREPPLAYEPPAPAPLPSPS 65
Query: 413 XXXLQSSRKLSPTEPKNYGSYXXXXXXXXXXXXXXXXXXELNRKAEELDRRERELQHAAL 592
LQSSRKLSPTEPKNYGSY ELNRKAEELDRRERELQHAAL
Sbjct: 66 APSLQSSRKLSPTEPKNYGSYSTQASAAAATAELLKKQEELNRKAEELDRRERELQHAAL 125
Query: 593 GGTATRQNNWPPLPSFCPVQPCFFQDISMEIPQEFQKTVSTMYYLWMCSTXXXXXXXXXX 772
GGTA RQNNWPPLPSFCPVQPCFFQDISMEIPQEFQKTVSTMYYLWM T
Sbjct: 126 GGTAARQNNWPPLPSFCPVQPCFFQDISMEIPQEFQKTVSTMYYLWMFCTLALLLNFLAC 185
Query: 773 XXSFCVETNTGSGFGLSILWILLFTPCSFVCWYRPMYKAXXXXXXXXXXXXXXXXXVQDV 952
SFCVET+ GSGFGLSILW+LLFTPCSFVCWYRPMYKA VQDV
Sbjct: 186 LASFCVETSNGSGFGLSILWVLLFTPCSFVCWYRPMYKAFRSDSSFNFFVFFFIFFVQDV 245
Query: 953 LYVLQAIGIPGWGFSGWISXXXXXXXXXXXXXXXXXXXXXXXGIAVLGIVMLKRIHSLYR 1132
L+VLQAIGIPGWGFSGWIS GIAVLGIVMLKRIHSLYR
Sbjct: 246 LFVLQAIGIPGWGFSGWISALVVLKTNTAVAVLMLLVALLFTGIAVLGIVMLKRIHSLYR 305
Query: 1133 RTGASFQKAQQEFAAGVFSNP 1195
RTGASFQKAQQEFAAGVFSNP
Sbjct: 306 RTGASFQKAQQEFAAGVFSNP 326
>ref|XP_864743.1| PREDICTED: similar to secretory carrier membrane protein 3 isoform 1
isoform 3 [Canis familiaris].
Length = 357
Score = 427 bits (1098), Expect = e-119
Identities = 222/331 (67%), Positives = 225/331 (67%), Gaps = 10/331 (3%)
Frame = +2
Query: 233 DGGNPFAEPGELDNPFQDPAVIQHRPSPQYATLDVYNPFETRXXXXXXXXXXXXXXXXXX 412
DG NPFA P ELDNPFQDPAVIQHRPSPQYATLDVYNPFETR
Sbjct: 6 DGENPFAGPSELDNPFQDPAVIQHRPSPQYATLDVYNPFETREPPLAYEPPAPAPLPSPS 65
Query: 413 XXXLQSSRKLSPTEPKNYGSYXXXXXXXXXXXXXXXXXXELNRKAEELDRRERELQHAAL 592
LQSSRKLSPTEPKNYGSY ELNRKAEELDRRERELQHAAL
Sbjct: 66 APSLQSSRKLSPTEPKNYGSYSTQASAAAATAELLKKQEELNRKAEELDRRERELQHAAL 125
Query: 593 GGTATRQNNWPPLPSFCPVQPCFFQDISMEIPQEFQKTVSTMYYLWMC----------ST 742
GGTA RQNNWPPLPSFCPVQPCFFQDISMEIPQEFQKTVSTMYYLWMC ST
Sbjct: 126 GGTAARQNNWPPLPSFCPVQPCFFQDISMEIPQEFQKTVSTMYYLWMCEYVLYLCPLGST 185
Query: 743 XXXXXXXXXXXXSFCVETNTGSGFGLSILWILLFTPCSFVCWYRPMYKAXXXXXXXXXXX 922
SFCVET+ GSGFGLSILW+LLFTPCSFVCWYRPMYKA
Sbjct: 186 LALLLNFLACLASFCVETSNGSGFGLSILWVLLFTPCSFVCWYRPMYKAFRSDSSFNFFV 245
Query: 923 XXXXXXVQDVLYVLQAIGIPGWGFSGWISXXXXXXXXXXXXXXXXXXXXXXXGIAVLGIV 1102
VQDVL+VLQAIGIPGWGFSGWIS GIAVLGIV
Sbjct: 246 FFFIFFVQDVLFVLQAIGIPGWGFSGWISALVVLKTNTAVAVLMLLVALLFTGIAVLGIV 305
Query: 1103 MLKRIHSLYRRTGASFQKAQQEFAAGVFSNP 1195
MLKRIHSLYRRTGASFQKAQQEFAAGVFSNP
Sbjct: 306 MLKRIHSLYRRTGASFQKAQQEFAAGVFSNP 336
>ref|XP_864783.1| PREDICTED: similar to secretory carrier membrane protein 3 isoform 1
isoform 5 [Canis familiaris].
Length = 333
Score = 393 bits (1010), Expect = e-109
Identities = 209/321 (65%), Positives = 212/321 (66%)
Frame = +2
Query: 233 DGGNPFAEPGELDNPFQDPAVIQHRPSPQYATLDVYNPFETRXXXXXXXXXXXXXXXXXX 412
DG NPFA P ELDNPFQDPAVIQHRPSPQYATLDVYNPFETR
Sbjct: 6 DGENPFAGPSELDNPFQDPAVIQHRPSPQYATLDVYNPFETREPPLAYEPPAPAPLPSPS 65
Query: 413 XXXLQSSRKLSPTEPKNYGSYXXXXXXXXXXXXXXXXXXELNRKAEELDRRERELQHAAL 592
LQSSRKLSPTEPKNYGSY ELNRKAEELDRRERELQHAAL
Sbjct: 66 APSLQSSRKLSPTEPKNYGSYSTQASAAAATAELLKKQEELNRKAEELDRRERELQHAAL 125
Query: 593 GGTATRQNNWPPLPSFCPVQPCFFQDISMEIPQEFQKTVSTMYYLWMCSTXXXXXXXXXX 772
GGTA VQPCFFQDISMEIPQEFQKTVSTMYYLWMCST
Sbjct: 126 GGTA--------------VQPCFFQDISMEIPQEFQKTVSTMYYLWMCSTLALLLNFLAC 171
Query: 773 XXSFCVETNTGSGFGLSILWILLFTPCSFVCWYRPMYKAXXXXXXXXXXXXXXXXXVQDV 952
SFCVET+ GSGFGLSILW+LLFTPCSFVCWYRPMYKA VQDV
Sbjct: 172 LASFCVETSNGSGFGLSILWVLLFTPCSFVCWYRPMYKAFRSDSSFNFFVFFFIFFVQDV 231
Query: 953 LYVLQAIGIPGWGFSGWISXXXXXXXXXXXXXXXXXXXXXXXGIAVLGIVMLKRIHSLYR 1132
L+VLQAIGIPGWGFSGWIS GIAVLGIVMLKRIHSLYR
Sbjct: 232 LFVLQAIGIPGWGFSGWISALVVLKTNTAVAVLMLLVALLFTGIAVLGIVMLKRIHSLYR 291
Query: 1133 RTGASFQKAQQEFAAGVFSNP 1195
RTGASFQKAQQEFAAGVFSNP
Sbjct: 292 RTGASFQKAQQEFAAGVFSNP 312
>ref|XP_864802.1| PREDICTED: similar to secretory carrier membrane protein 3 isoform 2
isoform 6 [Canis familiaris].
Length = 321
Score = 375 bits (964), Expect = e-104
Identities = 200/321 (62%), Positives = 205/321 (63%)
Frame = +2
Query: 233 DGGNPFAEPGELDNPFQDPAVIQHRPSPQYATLDVYNPFETRXXXXXXXXXXXXXXXXXX 412
DG NPFA P ELDNPFQ P + P+P
Sbjct: 6 DGENPFAGPSELDNPFQPPLAYEP-PAPA-------------------------PLPSPS 39
Query: 413 XXXLQSSRKLSPTEPKNYGSYXXXXXXXXXXXXXXXXXXELNRKAEELDRRERELQHAAL 592
LQSSRKLSPTEPKNYGSY ELNRKAEELDRRERELQHAAL
Sbjct: 40 APSLQSSRKLSPTEPKNYGSYSTQASAAAATAELLKKQEELNRKAEELDRRERELQHAAL 99
Query: 593 GGTATRQNNWPPLPSFCPVQPCFFQDISMEIPQEFQKTVSTMYYLWMCSTXXXXXXXXXX 772
GGTA RQNNWPPLPSFCPVQPCFFQDISMEIPQEFQKTVSTMYYLWMCST
Sbjct: 100 GGTAARQNNWPPLPSFCPVQPCFFQDISMEIPQEFQKTVSTMYYLWMCSTLALLLNFLAC 159
Query: 773 XXSFCVETNTGSGFGLSILWILLFTPCSFVCWYRPMYKAXXXXXXXXXXXXXXXXXVQDV 952
SFCVET+ GSGFGLSILW+LLFTPCSFVCWYRPMYKA VQDV
Sbjct: 160 LASFCVETSNGSGFGLSILWVLLFTPCSFVCWYRPMYKAFRSDSSFNFFVFFFIFFVQDV 219
Query: 953 LYVLQAIGIPGWGFSGWISXXXXXXXXXXXXXXXXXXXXXXXGIAVLGIVMLKRIHSLYR 1132
L+VLQAIGIPGWGFSGWIS GIAVLGIVMLKRIHSLYR
Sbjct: 220 LFVLQAIGIPGWGFSGWISALVVLKTNTAVAVLMLLVALLFTGIAVLGIVMLKRIHSLYR 279
Query: 1133 RTGASFQKAQQEFAAGVFSNP 1195
RTGASFQKAQQEFAAGVFSNP
Sbjct: 280 RTGASFQKAQQEFAAGVFSNP 300
>ref|XP_864724.1| PREDICTED: similar to secretory carrier membrane protein 3 isoform
1 isoform 2 [Canis familiaris].
Length = 181
Score = 249 bits (637), Expect = 3e-66
Identities = 124/167 (74%), Positives = 124/167 (74%)
Frame = +2
Query: 233 DGGNPFAEPGELDNPFQDPAVIQHRPSPQYATLDVYNPFETRXXXXXXXXXXXXXXXXXX 412
DG NPFA P ELDNPFQDPAVIQHRPSPQYATLDVYNPFETR
Sbjct: 6 DGENPFAGPSELDNPFQDPAVIQHRPSPQYATLDVYNPFETREPPLAYEPPAPAPLPSPS 65
Query: 413 XXXLQSSRKLSPTEPKNYGSYXXXXXXXXXXXXXXXXXXELNRKAEELDRRERELQHAAL 592
LQSSRKLSPTEPKNYGSY ELNRKAEELDRRERELQHAAL
Sbjct: 66 APSLQSSRKLSPTEPKNYGSYSTQASAAAATAELLKKQEELNRKAEELDRRERELQHAAL 125
Query: 593 GGTATRQNNWPPLPSFCPVQPCFFQDISMEIPQEFQKTVSTMYYLWM 733
GGTA RQNNWPPLPSFCPVQPCFFQDISMEIPQEFQKTVSTMYYLWM
Sbjct: 126 GGTAARQNNWPPLPSFCPVQPCFFQDISMEIPQEFQKTVSTMYYLWM 172
>ref|XP_859726.1| PREDICTED: similar to Secretory carrier-associated membrane protein 1
(Secretory carrier membrane protein 1) isoform 2 [Canis
familiaris].
Length = 341
Score = 226 bits (577), Expect = 3e-59
Identities = 135/319 (42%), Positives = 160/319 (50%), Gaps = 2/319 (0%)
Frame = +2
Query: 242 NPFAEPGELDNPFQDPAVIQ-HRPSPQYATLDVYNPFETRXXXXXXXXXXXXXXXXXXXX 418
NPFA+P +L+NPF+DP+V Q R P LD YNPF
Sbjct: 7 NPFADP-DLNNPFKDPSVTQVTRNVPP--GLDEYNPFSDSRTPPPGTVKMPNVPSTQPAI 63
Query: 419 XLQSSRKLSPTEPKNYGSYXXXXXXXXXXXXXXXXXXE-LNRKAEELDRRERELQHAALG 595
+ PTE + +Y E L RKA ELDRRERE+Q+ +
Sbjct: 64 -------MKPTE--EHPAYTQIAKEHALAQAELLKRQEELERKAAELDRREREMQNLSQH 114
Query: 596 GTATRQNNWPPLPSFCPVQPCFFQDISMEIPQEFQKTVSTMYYLWMCSTXXXXXXXXXXX 775
GT +R+NNWPPLP PV PCF+QD S++IP EFQKTV MYYLWM
Sbjct: 115 GTLSRKNNWPPLPGNFPVGPCFYQDFSVDIPVEFQKTVKIMYYLWMFHAVTLFLNIFGCL 174
Query: 776 XSFCVETNTGSGFGLSILWILLFTPCSFVCWYRPMYKAXXXXXXXXXXXXXXXXXVQDVL 955
FCV+ G FGLSILW LLFTPCSFVCWYRP+Y A Q +
Sbjct: 175 AWFCVDPTRGVDFGLSILWFLLFTPCSFVCWYRPLYGAFRSDSSFRFFVFFFVYICQFAV 234
Query: 956 YVLQAIGIPGWGFSGWISXXXXXXXXXXXXXXXXXXXXXXXGIAVLGIVMLKRIHSLYRR 1135
+VLQA G WG GWIS AV+ +VM K++H LYR
Sbjct: 235 HVLQAAGFHNWGNCGWISSLTGLNQSIPVGIMMIIIAALFTASAVISLVMFKKVHGLYRT 294
Query: 1136 TGASFQKAQQEFAAGVFSN 1192
TGASF+KAQQEFA GV SN
Sbjct: 295 TGASFEKAQQEFATGVMSN 313
>ref|XP_544777.2| PREDICTED: similar to Secretory carrier-associated membrane protein 2
isoform 1 [Canis familiaris].
Length = 329
Score = 222 bits (566), Expect = 6e-58
Identities = 126/318 (39%), Positives = 172/318 (54%), Gaps = 1/318 (0%)
Frame = +2
Query: 242 NPFAEPGELDNPFQDPAVIQHRPSPQYATLDVYNPFETRXXXXXXXXXXXXXXXXXXXXX 421
NPFA+P ++ NPFQDP+V Q +PQ +L +NPF
Sbjct: 7 NPFADPVDV-NPFQDPSVTQLTNAPQ-GSLAEFNPFSETNAATTVPVTQLPGPSQPAV-- 62
Query: 422 LQSSRKLSPTEPKNYGSYXXXXXXXXXXXXXXXXXXELNRKAEELDRRERELQHAALGGT 601
LQ S + PT+P EL+RKA EL+R+ERELQ + +
Sbjct: 63 LQPS--VEPTQPTPQA------VASAAQASLLRQQEELDRKAAELERKERELQ-STVASL 113
Query: 602 ATRQNNWPPLPSFCPVQPCFFQDISMEIPQEFQKTVSTMYYLWMCSTXXXXXXXXXXXXS 781
R+NNWPPLP +CPV+PCF+QD S+EIP ++Q+ +YYLWM +
Sbjct: 114 HVRENNWPPLPFWCPVKPCFYQDFSVEIPADYQRICKMLYYLWMLHSVTLFLNLLACLAW 173
Query: 782 FCVETNTGSGFGLSILWILLFTPCSFVCWYRPMYKAXXXXXXXXXXXXXXXXXVQDVLYV 961
F V+++ G FGLSILW+++FTPC+F+CWYRP+YKA Q V+Y+
Sbjct: 174 FLVDSSKGVDFGLSILWLIMFTPCAFLCWYRPIYKAFRSDNSFSFFVFFFIFFCQIVIYI 233
Query: 962 LQAIGIPGWGFSGWISXXXXXXXXXXXXXXXXXXXXXXXGI-AVLGIVMLKRIHSLYRRT 1138
+Q +GIPG G SGWI+ + AVL + +LKR+HSLYRRT
Sbjct: 234 IQLVGIPGLGDSGWIAALSTLKQDHLAVSIIMMVVAGFFTLCAVLSLFLLKRVHSLYRRT 293
Query: 1139 GASFQKAQQEFAAGVFSN 1192
GASFQ+AQ+EF+ G+FSN
Sbjct: 294 GASFQQAQEEFSQGIFSN 311
>ref|XP_536314.2| PREDICTED: similar to Secretory carrier-associated membrane protein 1
(Secretory carrier membrane protein 1) isoform 1 [Canis
familiaris].
Length = 338
Score = 219 bits (558), Expect = 5e-57
Identities = 134/319 (42%), Positives = 158/319 (49%), Gaps = 2/319 (0%)
Frame = +2
Query: 242 NPFAEPGELDNPFQDPAVIQ-HRPSPQYATLDVYNPFETRXXXXXXXXXXXXXXXXXXXX 418
NPFA+P +L+NPF+DP+V Q R P LD YNPF
Sbjct: 7 NPFADP-DLNNPFKDPSVTQVTRNVPP--GLDEYNPFSDSRTPPPGTVKMPNVPSTQPAI 63
Query: 419 XLQSSRKLSPTEPKNYGSYXXXXXXXXXXXXXXXXXXE-LNRKAEELDRRERELQHAALG 595
+ PTE + +Y E L RKA ELDRRERE+Q+ +
Sbjct: 64 -------MKPTE--EHPAYTQIAKEHALAQAELLKRQEELERKAAELDRREREMQNLSQH 114
Query: 596 GTATRQNNWPPLPSFCPVQPCFFQDISMEIPQEFQKTVSTMYYLWMCSTXXXXXXXXXXX 775
G R+NNWPPLP PV PCF+QD S++IP EFQKTV MYYLWM
Sbjct: 115 G---RKNNWPPLPGNFPVGPCFYQDFSVDIPVEFQKTVKIMYYLWMFHAVTLFLNIFGCL 171
Query: 776 XSFCVETNTGSGFGLSILWILLFTPCSFVCWYRPMYKAXXXXXXXXXXXXXXXXXVQDVL 955
FCV+ G FGLSILW LLFTPCSFVCWYRP+Y A Q +
Sbjct: 172 AWFCVDPTRGVDFGLSILWFLLFTPCSFVCWYRPLYGAFRSDSSFRFFVFFFVYICQFAV 231
Query: 956 YVLQAIGIPGWGFSGWISXXXXXXXXXXXXXXXXXXXXXXXGIAVLGIVMLKRIHSLYRR 1135
+VLQA G WG GWIS AV+ +VM K++H LYR
Sbjct: 232 HVLQAAGFHNWGNCGWISSLTGLNQSIPVGIMMIIIAALFTASAVISLVMFKKVHGLYRT 291
Query: 1136 TGASFQKAQQEFAAGVFSN 1192
TGASF+KAQQEFA GV SN
Sbjct: 292 TGASFEKAQQEFATGVMSN 310
Database: RefSeq44_CP.fasta
Posted date: Nov 15, 2010 4:36 PM
Number of letters in database: 18,921,627
Number of sequences in database: 33,359
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33359
Number of Hits to DB: 51,557,787
Number of extensions: 1358294
Number of successful extensions: 5898
Number of sequences better than 1.0e-05: 15
Number of HSP's gapped: 5825
Number of HSP's successfully gapped: 18
Length of query: 469
Length of database: 18,921,627
Length adjustment: 106
Effective length of query: 363
Effective length of database: 15,385,573
Effective search space: 5584962999
Effective search space used: 5584962999
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqHP_Rel44
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20070806C-001148
(1408 letters)
Database: RefSeq44_HP.fasta
33,950 sequences; 18,324,212 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_005689.2| secretory carrier-associated membrane protein 3... 438 e-123
Alignment gi|NP_443069.1| secretory carrier-associated membrane protein 3... 382 e-106
Alignment gi|NP_004857.4| secretory carrier-associated membrane protein 1... 218 8e-57
Alignment gi|NP_005688.2| secretory carrier-associated membrane protein 2... 214 1e-55
Alignment gi|NP_001171583.1| secretory carrier-associated membrane protei... 149 8e-36
Alignment gi|NP_620417.1| secretory carrier-associated membrane protein 5... 149 8e-36
Alignment gi|NP_001171582.1| secretory carrier-associated membrane protei... 149 8e-36
Alignment gi|NP_524558.1| secretory carrier-associated membrane protein 4... 145 7e-35
>ref|NP_005689.2| secretory carrier-associated membrane protein 3 isoform 1 [Homo
sapiens].
Length = 347
Score = 438 bits (1127), Expect = e-123
Identities = 223/321 (69%), Positives = 226/321 (70%)
Frame = +2
Query: 233 DGGNPFAEPGELDNPFQDPAVIQHRPSPQYATLDVYNPFETRXXXXXXXXXXXXXXXXXX 412
DGGNPFAEP ELDNPFQDPAVIQHRPS QYATLDVYNPFETR
Sbjct: 6 DGGNPFAEPSELDNPFQDPAVIQHRPSRQYATLDVYNPFETREPPPAYEPPAPAPLPPPS 65
Query: 413 XXXLQSSRKLSPTEPKNYGSYXXXXXXXXXXXXXXXXXXELNRKAEELDRRERELQHAAL 592
LQ SRKLSPTEPKNYGSY ELNRKAEELDRRERELQHAAL
Sbjct: 66 APSLQPSRKLSPTEPKNYGSYSTQASAAAATAELLKKQEELNRKAEELDRRERELQHAAL 125
Query: 593 GGTATRQNNWPPLPSFCPVQPCFFQDISMEIPQEFQKTVSTMYYLWMCSTXXXXXXXXXX 772
GGTATRQNNWPPLPSFCPVQPCFFQDISMEIPQEFQKTVSTMYYLWMCST
Sbjct: 126 GGTATRQNNWPPLPSFCPVQPCFFQDISMEIPQEFQKTVSTMYYLWMCSTLALLLNFLAC 185
Query: 773 XXSFCVETNTGSGFGLSILWILLFTPCSFVCWYRPMYKAXXXXXXXXXXXXXXXXXVQDV 952
SFCVETN G+GFGLSILW+LLFTPCSFVCWYRPMYKA VQDV
Sbjct: 186 LASFCVETNNGAGFGLSILWVLLFTPCSFVCWYRPMYKAFRSDSSFNFFVFFFIFFVQDV 245
Query: 953 LYVLQAIGIPGWGFSGWISXXXXXXXXXXXXXXXXXXXXXXXGIAVLGIVMLKRIHSLYR 1132
L+VLQAIGIPGWGFSGWIS GIAVLGIVMLKRIHSLYR
Sbjct: 246 LFVLQAIGIPGWGFSGWISALVVPKGNTAVSVLMLLVALLFTGIAVLGIVMLKRIHSLYR 305
Query: 1133 RTGASFQKAQQEFAAGVFSNP 1195
RTGASFQKAQQEFAAGVFSNP
Sbjct: 306 RTGASFQKAQQEFAAGVFSNP 326
>ref|NP_443069.1| secretory carrier-associated membrane protein 3 isoform 2 [Homo
sapiens].
Length = 321
Score = 382 bits (981), Expect = e-106
Identities = 202/321 (62%), Positives = 207/321 (64%)
Frame = +2
Query: 233 DGGNPFAEPGELDNPFQDPAVIQHRPSPQYATLDVYNPFETRXXXXXXXXXXXXXXXXXX 412
DGGNPFAEP ELDNPFQ P + P+P
Sbjct: 6 DGGNPFAEPSELDNPFQPPPAYEP-PAPA-------------------------PLPPPS 39
Query: 413 XXXLQSSRKLSPTEPKNYGSYXXXXXXXXXXXXXXXXXXELNRKAEELDRRERELQHAAL 592
LQ SRKLSPTEPKNYGSY ELNRKAEELDRRERELQHAAL
Sbjct: 40 APSLQPSRKLSPTEPKNYGSYSTQASAAAATAELLKKQEELNRKAEELDRRERELQHAAL 99
Query: 593 GGTATRQNNWPPLPSFCPVQPCFFQDISMEIPQEFQKTVSTMYYLWMCSTXXXXXXXXXX 772
GGTATRQNNWPPLPSFCPVQPCFFQDISMEIPQEFQKTVSTMYYLWMCST
Sbjct: 100 GGTATRQNNWPPLPSFCPVQPCFFQDISMEIPQEFQKTVSTMYYLWMCSTLALLLNFLAC 159
Query: 773 XXSFCVETNTGSGFGLSILWILLFTPCSFVCWYRPMYKAXXXXXXXXXXXXXXXXXVQDV 952
SFCVETN G+GFGLSILW+LLFTPCSFVCWYRPMYKA VQDV
Sbjct: 160 LASFCVETNNGAGFGLSILWVLLFTPCSFVCWYRPMYKAFRSDSSFNFFVFFFIFFVQDV 219
Query: 953 LYVLQAIGIPGWGFSGWISXXXXXXXXXXXXXXXXXXXXXXXGIAVLGIVMLKRIHSLYR 1132
L+VLQAIGIPGWGFSGWIS GIAVLGIVMLKRIHSLYR
Sbjct: 220 LFVLQAIGIPGWGFSGWISALVVPKGNTAVSVLMLLVALLFTGIAVLGIVMLKRIHSLYR 279
Query: 1133 RTGASFQKAQQEFAAGVFSNP 1195
RTGASFQKAQQEFAAGVFSNP
Sbjct: 280 RTGASFQKAQQEFAAGVFSNP 300
>ref|NP_004857.4| secretory carrier-associated membrane protein 1 [Homo sapiens].
Length = 338
Score = 218 bits (556), Expect = 8e-57
Identities = 134/319 (42%), Positives = 159/319 (49%), Gaps = 2/319 (0%)
Frame = +2
Query: 242 NPFAEPGELDNPFQDPAVIQ-HRPSPQYATLDVYNPFETRXXXXXXXXXXXXXXXXXXXX 418
NPFA+P +L+NPF+DP+V Q R P LD YNPF
Sbjct: 7 NPFADP-DLNNPFKDPSVTQVTRNVPP--GLDEYNPFSDSRTPPPGGVKMPNVPNTQPAI 63
Query: 419 XLQSSRKLSPTEPKNYGSYXXXXXXXXXXXXXXXXXXE-LNRKAEELDRRERELQHAALG 595
+ PTE + +Y E L RKA ELDRRERE+Q+ +
Sbjct: 64 -------MKPTE--EHPAYTQIAKEHALAQAELLKRQEELERKAAELDRREREMQNLSQH 114
Query: 596 GTATRQNNWPPLPSFCPVQPCFFQDISMEIPQEFQKTVSTMYYLWMCSTXXXXXXXXXXX 775
G R+NNWPPLPS PV PCF+QD S++IP EFQKTV MYYLWM
Sbjct: 115 G---RKNNWPPLPSNFPVGPCFYQDFSVDIPVEFQKTVKLMYYLWMFHAVTLFLNIFGCL 171
Query: 776 XSFCVETNTGSGFGLSILWILLFTPCSFVCWYRPMYKAXXXXXXXXXXXXXXXXXVQDVL 955
FCV++ FGLSILW LLFTPCSFVCWYRP+Y A Q +
Sbjct: 172 AWFCVDSARAVDFGLSILWFLLFTPCSFVCWYRPLYGAFRSDSSFRFFVFFFVYICQFAV 231
Query: 956 YVLQAIGIPGWGFSGWISXXXXXXXXXXXXXXXXXXXXXXXGIAVLGIVMLKRIHSLYRR 1135
+VLQA G WG GWIS AV+ +VM K++H LYR
Sbjct: 232 HVLQAAGFHNWGNCGWISSLTGLNQNIPVGIMMIIIAALFTASAVISLVMFKKVHGLYRT 291
Query: 1136 TGASFQKAQQEFAAGVFSN 1192
TGASF+KAQQEFA GV SN
Sbjct: 292 TGASFEKAQQEFATGVMSN 310
>ref|NP_005688.2| secretory carrier-associated membrane protein 2 [Homo sapiens].
Length = 329
Score = 214 bits (546), Expect = 1e-55
Identities = 125/318 (39%), Positives = 167/318 (52%), Gaps = 1/318 (0%)
Frame = +2
Query: 242 NPFAEPGELDNPFQDPAVIQHRPSPQYATLDVYNPFETRXXXXXXXXXXXXXXXXXXXXX 421
NPFA+P ++ NPFQDP+V Q +PQ L +NPF
Sbjct: 7 NPFADPVDV-NPFQDPSVTQLTNAPQ-GGLAEFNPFSETNAATTVPVTQLPGSSQPAV-- 62
Query: 422 LQSSRKLSPTEPKNYGSYXXXXXXXXXXXXXXXXXXELNRKAEELDRRERELQHAALGGT 601
LQ S + PT+P EL+RKA EL+R+ERELQ+ +
Sbjct: 63 LQPS--VEPTQPTPQA------VVSAAQAGLLRQQEELDRKAAELERKERELQNT-VANL 113
Query: 602 ATRQNNWPPLPSFCPVQPCFFQDISMEIPQEFQKTVSTMYYLWMCSTXXXXXXXXXXXXS 781
RQNNWPPLPS+CPV+PCF+QD S EIP ++Q+ +YYLWM +
Sbjct: 114 HVRQNNWPPLPSWCPVKPCFYQDFSTEIPADYQRICKMLYYLWMLHSVTLFLNLLACLAW 173
Query: 782 FCVETNTGSGFGLSILWILLFTPCSFVCWYRPMYKAXXXXXXXXXXXXXXXXXVQDVLYV 961
F ++ G FGLSILW L+FTPC+F+CWYRP+YKA Q +Y+
Sbjct: 174 FSGNSSKGVDFGLSILWFLIFTPCAFLCWYRPIYKAFRSDNSFSFFVFFFVFFCQIGIYI 233
Query: 962 LQAIGIPGWGFSGWISXXXXXXXXXXXXXXXXXXXXXXXGI-AVLGIVMLKRIHSLYRRT 1138
+Q +GIPG G SGWI+ + AVL + +L+R+HSLYRRT
Sbjct: 234 IQLVGIPGLGDSGWIAALSTLDNHSLAISVIMMVVAGFFTLCAVLSVFLLQRVHSLYRRT 293
Query: 1139 GASFQKAQQEFAAGVFSN 1192
GASFQ+AQ+EF+ G+FS+
Sbjct: 294 GASFQQAQEEFSQGIFSS 311
>ref|NP_001171583.1| secretory carrier-associated membrane protein 5 [Homo sapiens].
Length = 235
Score = 149 bits (375), Expect = 8e-36
Identities = 69/198 (34%), Positives = 101/198 (51%)
Frame = +2
Query: 602 ATRQNNWPPLPSFCPVQPCFFQDISMEIPQEFQKTVSTMYYLWMCSTXXXXXXXXXXXXS 781
A + NN+PPLP F P++PCF+QD +IP + +YYLWM ++ +
Sbjct: 2 AEKVNNFPPLPKFIPLKPCFYQDFEADIPPQHVSMTKRLYYLWMLNS-VTLAVNLVGCLA 60
Query: 782 FCVETNTGSGFGLSILWILLFTPCSFVCWYRPMYKAXXXXXXXXXXXXXXXXXVQDVLYV 961
+ + + FGL+ LW++LFTPCS+VCW+RP+YKA Q V+ +
Sbjct: 61 WLIGGGGATNFGLAFLWLILFTPCSYVCWFRPIYKAFKTDSSFSFMAFFFTFMAQLVISI 120
Query: 962 LQAIGIPGWGFSGWISXXXXXXXXXXXXXXXXXXXXXXXGIAVLGIVMLKRIHSLYRRTG 1141
+QA+GIPGWG GWI+ +AV + L +H YR +G
Sbjct: 121 IQAVGIPGWGVCGWIATISFFGTNIGSAVVMLIPTVMFTVMAVFSFIALSMVHKFYRGSG 180
Query: 1142 ASFQKAQQEFAAGVFSNP 1195
SF KAQ+E+ G + NP
Sbjct: 181 GSFSKAQEEWTTGAWKNP 198
>ref|NP_620417.1| secretory carrier-associated membrane protein 5 [Homo sapiens].
Length = 235
Score = 149 bits (375), Expect = 8e-36
Identities = 69/198 (34%), Positives = 101/198 (51%)
Frame = +2
Query: 602 ATRQNNWPPLPSFCPVQPCFFQDISMEIPQEFQKTVSTMYYLWMCSTXXXXXXXXXXXXS 781
A + NN+PPLP F P++PCF+QD +IP + +YYLWM ++ +
Sbjct: 2 AEKVNNFPPLPKFIPLKPCFYQDFEADIPPQHVSMTKRLYYLWMLNS-VTLAVNLVGCLA 60
Query: 782 FCVETNTGSGFGLSILWILLFTPCSFVCWYRPMYKAXXXXXXXXXXXXXXXXXVQDVLYV 961
+ + + FGL+ LW++LFTPCS+VCW+RP+YKA Q V+ +
Sbjct: 61 WLIGGGGATNFGLAFLWLILFTPCSYVCWFRPIYKAFKTDSSFSFMAFFFTFMAQLVISI 120
Query: 962 LQAIGIPGWGFSGWISXXXXXXXXXXXXXXXXXXXXXXXGIAVLGIVMLKRIHSLYRRTG 1141
+QA+GIPGWG GWI+ +AV + L +H YR +G
Sbjct: 121 IQAVGIPGWGVCGWIATISFFGTNIGSAVVMLIPTVMFTVMAVFSFIALSMVHKFYRGSG 180
Query: 1142 ASFQKAQQEFAAGVFSNP 1195
SF KAQ+E+ G + NP
Sbjct: 181 GSFSKAQEEWTTGAWKNP 198
>ref|NP_001171582.1| secretory carrier-associated membrane protein 5 [Homo sapiens].
Length = 235
Score = 149 bits (375), Expect = 8e-36
Identities = 69/198 (34%), Positives = 101/198 (51%)
Frame = +2
Query: 602 ATRQNNWPPLPSFCPVQPCFFQDISMEIPQEFQKTVSTMYYLWMCSTXXXXXXXXXXXXS 781
A + NN+PPLP F P++PCF+QD +IP + +YYLWM ++ +
Sbjct: 2 AEKVNNFPPLPKFIPLKPCFYQDFEADIPPQHVSMTKRLYYLWMLNS-VTLAVNLVGCLA 60
Query: 782 FCVETNTGSGFGLSILWILLFTPCSFVCWYRPMYKAXXXXXXXXXXXXXXXXXVQDVLYV 961
+ + + FGL+ LW++LFTPCS+VCW+RP+YKA Q V+ +
Sbjct: 61 WLIGGGGATNFGLAFLWLILFTPCSYVCWFRPIYKAFKTDSSFSFMAFFFTFMAQLVISI 120
Query: 962 LQAIGIPGWGFSGWISXXXXXXXXXXXXXXXXXXXXXXXGIAVLGIVMLKRIHSLYRRTG 1141
+QA+GIPGWG GWI+ +AV + L +H YR +G
Sbjct: 121 IQAVGIPGWGVCGWIATISFFGTNIGSAVVMLIPTVMFTVMAVFSFIALSMVHKFYRGSG 180
Query: 1142 ASFQKAQQEFAAGVFSNP 1195
SF KAQ+E+ G + NP
Sbjct: 181 GSFSKAQEEWTTGAWKNP 198
>ref|NP_524558.1| secretory carrier-associated membrane protein 4 [Homo sapiens].
Length = 229
Score = 145 bits (367), Expect = 7e-35
Identities = 74/198 (37%), Positives = 103/198 (52%), Gaps = 2/198 (1%)
Frame = +2
Query: 608 RQNNWPPLPSFCPVQPCFFQDISMEIPQEFQKTVSTMYYLWM--CSTXXXXXXXXXXXXS 781
++NN+PPLP F PV+PCF+Q+ S EIP E Q V +Y LWM C+T +
Sbjct: 4 KENNFPPLPKFIPVKPCFYQNFSDEIPVEHQVLVKRIYRLWMFYCAT---LGVNLIACLA 60
Query: 782 FCVETNTGSGFGLSILWILLFTPCSFVCWYRPMYKAXXXXXXXXXXXXXXXXXVQDVLYV 961
+ + +G+ FGL+ +W+LLFTPC +VCW+RP+YKA Q VL V
Sbjct: 61 WWIGGGSGTNFGLAFVWLLLFTPCGYVCWFRPVYKAFRADSSFNFMAFFFIFGAQFVLTV 120
Query: 962 LQAIGIPGWGFSGWISXXXXXXXXXXXXXXXXXXXXXXXGIAVLGIVMLKRIHSLYRRTG 1141
+QAIG GWG GW+S A + + + ++H +YR G
Sbjct: 121 IQAIGFSGWGACGWLSAIGFFQYSPGAAVVMLLPAIMFSVSAAMMAIAIMKVHRIYRGAG 180
Query: 1142 ASFQKAQQEFAAGVFSNP 1195
SFQKAQ E+ G + NP
Sbjct: 181 GSFQKAQTEWNTGTWRNP 198
Database: RefSeq44_HP.fasta
Posted date: Nov 15, 2010 4:36 PM
Number of letters in database: 18,324,212
Number of sequences in database: 33,950
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33950
Number of Hits to DB: 50,972,365
Number of extensions: 1353719
Number of successful extensions: 5454
Number of sequences better than 1.0e-05: 8
Number of HSP's gapped: 5405
Number of HSP's successfully gapped: 9
Length of query: 469
Length of database: 18,324,212
Length adjustment: 106
Effective length of query: 363
Effective length of database: 14,725,512
Effective search space: 5345360856
Effective search space used: 5345360856
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqMP_Rel44
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20070806C-001148
(1408 letters)
Database: RefSeq44_MP.fasta
29,866 sequences; 15,452,059 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_036016.2| secretory carrier-associated membrane protein 3... 408 e-114
Alignment gi|NP_083429.1| secretory carrier-associated membrane protein 1... 219 3e-57
Alignment gi|NP_073724.1| secretory carrier-associated membrane protein 2... 203 2e-52
Alignment gi|NP_064666.1| secretory carrier-associated membrane protein 5... 149 4e-36
Alignment gi|NP_062521.1| secretory carrier-associated membrane protein 4... 147 2e-35
>ref|NP_036016.2| secretory carrier-associated membrane protein 3 [Mus musculus].
Length = 349
Score = 408 bits (1048), Expect = e-114
Identities = 207/323 (64%), Positives = 219/323 (67%), Gaps = 2/323 (0%)
Frame = +2
Query: 233 DGGNPFAEPGELDNPFQDPAVIQHRPSPQYATLDVYNPFETRXXXXXXXXXXXXXXXXXX 412
D GNPF + GELDNPFQDPAVIQHRPS QYATLDVYNPFE R
Sbjct: 6 DTGNPFPDSGELDNPFQDPAVIQHRPSQQYATLDVYNPFENREPPPAYEPPAPAPAPLPP 65
Query: 413 XXX--LQSSRKLSPTEPKNYGSYXXXXXXXXXXXXXXXXXXELNRKAEELDRRERELQHA 586
+QSSRKLSPTEP+NYGSY ELNRKAEELDRRERELQH
Sbjct: 66 PSAPSVQSSRKLSPTEPRNYGSYSTQASAAAATAELLKKQEELNRKAEELDRRERELQHV 125
Query: 587 ALGGTATRQNNWPPLPSFCPVQPCFFQDISMEIPQEFQKTVSTMYYLWMCSTXXXXXXXX 766
ALGG TRQNNWPPLPSFCPV+PCFFQDISMEIPQEFQKTVSTMYYLWMCST
Sbjct: 126 ALGGAGTRQNNWPPLPSFCPVKPCFFQDISMEIPQEFQKTVSTMYYLWMCSTLALLLNFF 185
Query: 767 XXXXSFCVETNTGSGFGLSILWILLFTPCSFVCWYRPMYKAXXXXXXXXXXXXXXXXXVQ 946
FCV+T +GSGFGLS+LW+LLFTPCSFVCWYRPMYKA VQ
Sbjct: 186 ACLARFCVDTGSGSGFGLSMLWLLLFTPCSFVCWYRPMYKAFRSDSSFNFFVFFFIFFVQ 245
Query: 947 DVLYVLQAIGIPGWGFSGWISXXXXXXXXXXXXXXXXXXXXXXXGIAVLGIVMLKRIHSL 1126
DV +VLQAIGIPGWGFSGW++ GIAVLGIVMLKRIHSL
Sbjct: 246 DVFFVLQAIGIPGWGFSGWVTALVVVGSKPAVAVLMLLVALLFTGIAVLGIVMLKRIHSL 305
Query: 1127 YRRTGASFQKAQQEFAAGVFSNP 1195
YR+TGASFQKAQQEFAAGVFSNP
Sbjct: 306 YRQTGASFQKAQQEFAAGVFSNP 328
>ref|NP_083429.1| secretory carrier-associated membrane protein 1 [Mus musculus].
Length = 338
Score = 219 bits (559), Expect = 3e-57
Identities = 134/319 (42%), Positives = 160/319 (50%), Gaps = 2/319 (0%)
Frame = +2
Query: 242 NPFAEPGELDNPFQDPAVIQ-HRPSPQYATLDVYNPFETRXXXXXXXXXXXXXXXXXXXX 418
NPFA+P +L+NPF+DP+V Q R P LD YNPF
Sbjct: 7 NPFADP-DLNNPFKDPSVTQVTRNVPP--GLDEYNPFSDSRTPPPGSVKMPNVPNTQPAI 63
Query: 419 XLQSSRKLSPTEPKNYGSYXXXXXXXXXXXXXXXXXXE-LNRKAEELDRRERELQHAALG 595
+ PTE + +Y E L RKA ELDRRERE+Q+ +
Sbjct: 64 -------MKPTE--EHPAYTQITKEHALAQAELLKRQEELERKAAELDRREREMQNLSQH 114
Query: 596 GTATRQNNWPPLPSFCPVQPCFFQDISMEIPQEFQKTVSTMYYLWMCSTXXXXXXXXXXX 775
G R+NNWPPLPS PV PCF+QD S++IP EFQKTV MYYLWM
Sbjct: 115 G---RKNNWPPLPSNFPVGPCFYQDFSVDIPVEFQKTVKLMYYLWMFHAVTLFLNIFGCL 171
Query: 776 XSFCVETNTGSGFGLSILWILLFTPCSFVCWYRPMYKAXXXXXXXXXXXXXXXXXVQDVL 955
FCV+++ FGLSILW LLFTPCSFVCWYRP+Y A Q +
Sbjct: 172 AWFCVDSSRAVDFGLSILWFLLFTPCSFVCWYRPLYGAFRSDSSFRFFVFFFVYICQFAV 231
Query: 956 YVLQAIGIPGWGFSGWISXXXXXXXXXXXXXXXXXXXXXXXGIAVLGIVMLKRIHSLYRR 1135
+VLQA G WG GWIS AV+ +VM K++H LYR
Sbjct: 232 HVLQAAGFHNWGNCGWISSLTGLNKNIPVGIMMIIIAALFTASAVISLVMFKKVHGLYRT 291
Query: 1136 TGASFQKAQQEFAAGVFSN 1192
TGASF+KAQQEFA GV SN
Sbjct: 292 TGASFEKAQQEFATGVMSN 310
>ref|NP_073724.1| secretory carrier-associated membrane protein 2 [Mus musculus].
Length = 329
Score = 203 bits (517), Expect = 2e-52
Identities = 118/318 (37%), Positives = 163/318 (51%), Gaps = 1/318 (0%)
Frame = +2
Query: 242 NPFAEPGELDNPFQDPAVIQHRPSPQYATLDVYNPFETRXXXXXXXXXXXXXXXXXXXXX 421
NPFA+P ++ NPFQDP+V Q +PQ + L +NPF
Sbjct: 7 NPFADPVDV-NPFQDPSVTQLTNAPQ-SGLAEFNPFSETNAATTVPATQAPGPSQPAV-- 62
Query: 422 LQSSRKLSPTEPKNYGSYXXXXXXXXXXXXXXXXXXELNRKAEELDRRERELQHAALGGT 601
LQ S + + P+ + EL+RKA EL+R+ERELQ+ A
Sbjct: 63 LQPSVEPAQPTPQAVAA--------AAQAGLLRQQEELDRKAAELERKERELQNTA-ANL 113
Query: 602 ATRQNNWPPLPSFCPVQPCFFQDISMEIPQEFQKTVSTMYYLWMCSTXXXXXXXXXXXXS 781
R NNWPPLPS+CPV+PCF+QD S EIP ++Q+ +YYLWM +
Sbjct: 114 HVRDNNWPPLPSWCPVKPCFYQDFSTEIPADYQRICKMLYYLWMLHSVTLFLNLLACLAW 173
Query: 782 FCVETNTGSGFGLSILWILLFTPCSFVCWYRPMYKAXXXXXXXXXXXXXXXXXVQDVLYV 961
F + G+ FGLSILW L+FTPC+F+CWYRP+YKA Q +Y
Sbjct: 174 FTSDAANGTAFGLSILWFLIFTPCAFLCWYRPIYKAFRSDNSFSFFVFFFVFFCQIGIYF 233
Query: 962 LQAIGIPGWGFSGWISXXXXXXXXXXXXXXXXXXXXXXXGI-AVLGIVMLKRIHSLYRRT 1138
+Q IG+P G SGW++ + A L + +L+R+H+ YRRT
Sbjct: 234 IQLIGLPNLGTSGWLAALSTMKNGPLAVTIIMMVVAGFFTLCAGLSLFLLQRVHAFYRRT 293
Query: 1139 GASFQKAQQEFAAGVFSN 1192
GASFQ+AQ+EF+ G+FS+
Sbjct: 294 GASFQQAQEEFSQGIFSS 311
>ref|NP_064666.1| secretory carrier-associated membrane protein 5 [Mus musculus].
Length = 235
Score = 149 bits (377), Expect = 4e-36
Identities = 69/198 (34%), Positives = 101/198 (51%)
Frame = +2
Query: 602 ATRQNNWPPLPSFCPVQPCFFQDISMEIPQEFQKTVSTMYYLWMCSTXXXXXXXXXXXXS 781
A + NN+PPLP F P++PCF+QD +IP + +YYLWM ++ +
Sbjct: 2 AEKVNNFPPLPKFIPLKPCFYQDFEADIPPQHLSLTKRLYYLWMLNS-VTLAVNLVGCLA 60
Query: 782 FCVETNTGSGFGLSILWILLFTPCSFVCWYRPMYKAXXXXXXXXXXXXXXXXXVQDVLYV 961
+ + + FGL+ LW++LFTPCS+VCW+RP+YKA Q V+ +
Sbjct: 61 WLIGGGGATNFGLAFLWLILFTPCSYVCWFRPIYKAFKTDSSFSFMAFFFTFMAQLVISI 120
Query: 962 LQAIGIPGWGFSGWISXXXXXXXXXXXXXXXXXXXXXXXGIAVLGIVMLKRIHSLYRRTG 1141
+QA+GIPGWG GWI+ +AV + L +H YR +G
Sbjct: 121 IQAVGIPGWGVCGWIATISFFGTNIGSAVVMLIPTVMFTVVAVFSFIALSMVHKFYRGSG 180
Query: 1142 ASFQKAQQEFAAGVFSNP 1195
SF KAQ+E+ G + NP
Sbjct: 181 GSFSKAQEEWTTGAWKNP 198
>ref|NP_062521.1| secretory carrier-associated membrane protein 4 [Mus musculus].
Length = 230
Score = 147 bits (371), Expect = 2e-35
Identities = 76/200 (38%), Positives = 106/200 (53%), Gaps = 2/200 (1%)
Frame = +2
Query: 602 ATRQNNWPPLPSFCPVQPCFFQDISMEIPQEFQKTVSTMYYLWM--CSTXXXXXXXXXXX 775
A ++NN+PPLP F P++PCF+QD S EIP E Q V +Y LWM C+T
Sbjct: 2 AGKENNFPPLPPFLPLKPCFYQDFSDEIPVEHQVLVKRIYRLWMFYCAT---LGVNLVAC 58
Query: 776 XSFCVETNTGSGFGLSILWILLFTPCSFVCWYRPMYKAXXXXXXXXXXXXXXXXXVQDVL 955
++ + G+ FGL++LW++LFTPCS+VCW+RP YKA Q VL
Sbjct: 59 LAWWIAGGAGANFGLALLWLVLFTPCSYVCWFRPAYKAFRADSSFNFMTFFFIFGAQFVL 118
Query: 956 YVLQAIGIPGWGFSGWISXXXXXXXXXXXXXXXXXXXXXXXGIAVLGIVMLKRIHSLYRR 1135
V+QAIG GWG GW++ A++ V + ++H +YR
Sbjct: 119 TVIQAIGFSGWGACGWLAAVGFFGTSVGAAVVMLVPAILFSLSALVMAVTIVKVHRIYRG 178
Query: 1136 TGASFQKAQQEFAAGVFSNP 1195
G S QKAQ E++AG + NP
Sbjct: 179 AGGSLQKAQTEWSAGTWRNP 198
Database: RefSeq44_MP.fasta
Posted date: Nov 15, 2010 4:36 PM
Number of letters in database: 15,452,059
Number of sequences in database: 29,866
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 29866
Number of Hits to DB: 42,278,974
Number of extensions: 1098110
Number of successful extensions: 4671
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 4608
Number of HSP's successfully gapped: 5
Length of query: 469
Length of database: 15,452,059
Length adjustment: 105
Effective length of query: 364
Effective length of database: 12,316,129
Effective search space: 4483070956
Effective search space used: 4483070956
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel44
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20070806C-001148
(1408 letters)
Database: RefSeq44_SP.fasta
20,576 sequences; 9,542,844 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001172098.1| secretory carrier membrane protein 3 [Sus sc... 451 e-127
Alignment gi|NP_999410.1| secretory carrier-associated membrane protein 1... 219 2e-57
Alignment gi|XP_001927445.1| PREDICTED: secretory carrier-associated memb... 216 2e-56
Alignment gi|XP_001924607.1| PREDICTED: secretory carrier-associated memb... 149 4e-36
Alignment gi|XP_003123066.1| PREDICTED: hypothetical protein LOC100513717... 145 6e-35
Alignment gi|XP_003128546.1| PREDICTED: secretory carrier-associated memb... 123 2e-28
Alignment gi|XP_001924761.1| PREDICTED: secretory carrier-associated memb... 107 1e-23
>ref|NP_001172098.1| secretory carrier membrane protein 3 [Sus scrofa].
Length = 347
Score = 451 bits (1160), Expect = e-127
Identities = 230/321 (71%), Positives = 230/321 (71%)
Frame = +2
Query: 233 DGGNPFAEPGELDNPFQDPAVIQHRPSPQYATLDVYNPFETRXXXXXXXXXXXXXXXXXX 412
DGGNPFAEPGELDNPFQDPAVIQHRPSPQYATLDVYNPFETR
Sbjct: 6 DGGNPFAEPGELDNPFQDPAVIQHRPSPQYATLDVYNPFETREPPPSYEAPAPVPVAPPS 65
Query: 413 XXXLQSSRKLSPTEPKNYGSYXXXXXXXXXXXXXXXXXXELNRKAEELDRRERELQHAAL 592
LQSSRKLSPTEPKNYGSY ELNRKAEELDRRERELQHAAL
Sbjct: 66 AAPLQSSRKLSPTEPKNYGSYSTQASAAAATAELLKKQEELNRKAEELDRRERELQHAAL 125
Query: 593 GGTATRQNNWPPLPSFCPVQPCFFQDISMEIPQEFQKTVSTMYYLWMCSTXXXXXXXXXX 772
GGTATRQNNWPPLPSFCPVQPCFFQDISMEIPQEFQKTVSTMYYLWMCST
Sbjct: 126 GGTATRQNNWPPLPSFCPVQPCFFQDISMEIPQEFQKTVSTMYYLWMCSTLALLLNFLAC 185
Query: 773 XXSFCVETNTGSGFGLSILWILLFTPCSFVCWYRPMYKAXXXXXXXXXXXXXXXXXVQDV 952
SFCVETNTGSGFGLSILWILLFTPCSFVCWYRPMYKA VQDV
Sbjct: 186 LASFCVETNTGSGFGLSILWILLFTPCSFVCWYRPMYKAFRSDSSFNFFVFFFIFFVQDV 245
Query: 953 LYVLQAIGIPGWGFSGWISXXXXXXXXXXXXXXXXXXXXXXXGIAVLGIVMLKRIHSLYR 1132
LYVLQAIGIPGWGFSGWIS GIAVLGIVMLKRIHSLYR
Sbjct: 246 LYVLQAIGIPGWGFSGWISALMLVNTNAAVAVLMLLVALFFTGIAVLGIVMLKRIHSLYR 305
Query: 1133 RTGASFQKAQQEFAAGVFSNP 1195
RTGASFQKAQQEFAAGVFSNP
Sbjct: 306 RTGASFQKAQQEFAAGVFSNP 326
>ref|NP_999410.1| secretory carrier-associated membrane protein 1 [Sus scrofa].
Length = 338
Score = 219 bits (559), Expect = 2e-57
Identities = 134/319 (42%), Positives = 159/319 (49%), Gaps = 2/319 (0%)
Frame = +2
Query: 242 NPFAEPGELDNPFQDPAVIQ-HRPSPQYATLDVYNPFETRXXXXXXXXXXXXXXXXXXXX 418
NPFA+P +L+NPF+DP+V Q R P LD YNPF
Sbjct: 7 NPFADP-DLNNPFKDPSVTQVTRNVPP--GLDEYNPFSDSRTPPPGNVKMPNVPSTQPAI 63
Query: 419 XLQSSRKLSPTEPKNYGSYXXXXXXXXXXXXXXXXXXE-LNRKAEELDRRERELQHAALG 595
+ PTE + +Y E L RKA ELDRRERE+Q+ +
Sbjct: 64 -------MKPTE--EHPAYTQIAKEHALAQAELLKRQEELERKAAELDRREREMQNLSQH 114
Query: 596 GTATRQNNWPPLPSFCPVQPCFFQDISMEIPQEFQKTVSTMYYLWMCSTXXXXXXXXXXX 775
G R+NNWPPLP PV PCF+QD S++IP EFQKTV MYYLWM
Sbjct: 115 G---RKNNWPPLPGNFPVGPCFYQDFSVDIPVEFQKTVKIMYYLWMFHAVTLFLNIFGCL 171
Query: 776 XSFCVETNTGSGFGLSILWILLFTPCSFVCWYRPMYKAXXXXXXXXXXXXXXXXXVQDVL 955
FCV+ + G FGLSILW LLFTPCSFVCWYRP+Y A Q +
Sbjct: 172 AWFCVDPSRGVDFGLSILWFLLFTPCSFVCWYRPLYGAFRSDSSFRFFVFFFVYICQFAV 231
Query: 956 YVLQAIGIPGWGFSGWISXXXXXXXXXXXXXXXXXXXXXXXGIAVLGIVMLKRIHSLYRR 1135
+VLQA G WG GWIS AV+ +VM K++H LYR
Sbjct: 232 HVLQAAGFHNWGNCGWISSLTGLNQSIPVGIMMIIIAALFTASAVISLVMFKKVHGLYRT 291
Query: 1136 TGASFQKAQQEFAAGVFSN 1192
TGASF+KAQQEFA GV SN
Sbjct: 292 TGASFEKAQQEFATGVMSN 310
>ref|XP_001927445.1| PREDICTED: secretory carrier-associated membrane protein 2-like [Sus
scrofa].
Length = 328
Score = 216 bits (550), Expect = 2e-56
Identities = 123/317 (38%), Positives = 166/317 (52%)
Frame = +2
Query: 242 NPFAEPGELDNPFQDPAVIQHRPSPQYATLDVYNPFETRXXXXXXXXXXXXXXXXXXXXX 421
NPFA+P ++ NPFQDP+V Q +PQ L +NPF
Sbjct: 7 NPFADPVDV-NPFQDPSVTQLTNAPQ-GGLAEFNPFSETNAATTVPVTQLPGPSQPAV-- 62
Query: 422 LQSSRKLSPTEPKNYGSYXXXXXXXXXXXXXXXXXXELNRKAEELDRRERELQHAALGGT 601
LQ S + PT+P EL+RKA EL+R+ERELQ+ +
Sbjct: 63 LQPS--VEPTQPTPQA------VASAAQASLLRQQEELDRKAAELERKERELQNT-VANL 113
Query: 602 ATRQNNWPPLPSFCPVQPCFFQDISMEIPQEFQKTVSTMYYLWMCSTXXXXXXXXXXXXS 781
R+NNWPPLP +CP++PCF+QD S EIP ++Q+ +YYLWM +
Sbjct: 114 HVRENNWPPLPIWCPIKPCFYQDFSTEIPADYQRICKMLYYLWMLHSVTLFLNLLACLAW 173
Query: 782 FCVETNTGSGFGLSILWILLFTPCSFVCWYRPMYKAXXXXXXXXXXXXXXXXXVQDVLYV 961
F V+T+ G FGLSILW ++FTPC+F+CWYRP+YKA Q +Y+
Sbjct: 174 FLVDTSRGVDFGLSILWFVIFTPCAFLCWYRPIYKAFRSDNSFSFFVFFFVFFCQIGIYI 233
Query: 962 LQAIGIPGWGFSGWISXXXXXXXXXXXXXXXXXXXXXXXGIAVLGIVMLKRIHSLYRRTG 1141
+Q +GIP G SGWI+ AVL + +LKR+HSLYRRTG
Sbjct: 234 IQLVGIPSLGDSGWIAALSTLKEDLAVSIIMMVVAGFFTLCAVLSLFLLKRVHSLYRRTG 293
Query: 1142 ASFQKAQQEFAAGVFSN 1192
ASFQ+AQ+EF+ G+FS+
Sbjct: 294 ASFQQAQEEFSQGIFSS 310
>ref|XP_001924607.1| PREDICTED: secretory carrier-associated membrane protein 5-like [Sus
scrofa].
Length = 235
Score = 149 bits (375), Expect = 4e-36
Identities = 69/198 (34%), Positives = 101/198 (51%)
Frame = +2
Query: 602 ATRQNNWPPLPSFCPVQPCFFQDISMEIPQEFQKTVSTMYYLWMCSTXXXXXXXXXXXXS 781
A + NN+PPLP F P++PCF+QD +IP + +YYLWM ++ +
Sbjct: 2 AEKVNNFPPLPKFIPLKPCFYQDFEADIPPQHLSMTKRLYYLWMLNS-VTLAVNLVGCLA 60
Query: 782 FCVETNTGSGFGLSILWILLFTPCSFVCWYRPMYKAXXXXXXXXXXXXXXXXXVQDVLYV 961
+ + + FGL+ LW++LFTPCS+VCW+RP+YKA Q V+ +
Sbjct: 61 WLIGGGGATNFGLAFLWLILFTPCSYVCWFRPIYKAFKTDSSFSFMAFFFTFMAQLVISI 120
Query: 962 LQAIGIPGWGFSGWISXXXXXXXXXXXXXXXXXXXXXXXGIAVLGIVMLKRIHSLYRRTG 1141
+QA+GIPGWG GWI+ +AV + L +H YR +G
Sbjct: 121 IQAVGIPGWGVCGWIATISFFGTNVGSAVVMLIPTIMFTVMAVFSFIALSMVHKFYRGSG 180
Query: 1142 ASFQKAQQEFAAGVFSNP 1195
SF KAQ+E+ G + NP
Sbjct: 181 GSFSKAQEEWTTGAWKNP 198
>ref|XP_003123066.1| PREDICTED: hypothetical protein LOC100513717 [Sus scrofa].
Length = 681
Score = 145 bits (365), Expect = 6e-35
Identities = 71/197 (36%), Positives = 105/197 (53%), Gaps = 2/197 (1%)
Frame = +2
Query: 611 QNNWPPLPSFCPVQPCFFQDISMEIPQEFQKTVSTMYYLWM--CSTXXXXXXXXXXXXSF 784
+NN+PPLP F P++PCF+Q+ S EIP E Q V +Y LW+ C+T ++
Sbjct: 456 ENNFPPLPKFIPLKPCFYQNFSDEIPIEHQVLVKRIYQLWLFYCAT---LGVNLVACLAW 512
Query: 785 CVETNTGSGFGLSILWILLFTPCSFVCWYRPMYKAXXXXXXXXXXXXXXXXXVQDVLYVL 964
+ +G+ FGL+++W+LLF+PC +VCW+RP YKA Q VL V+
Sbjct: 513 WIAAGSGANFGLALVWLLLFSPCGYVCWFRPAYKAFRSDSSFNFMAFFFIFGAQFVLAVI 572
Query: 965 QAIGIPGWGFSGWISXXXXXXXXXXXXXXXXXXXXXXXGIAVLGIVMLKRIHSLYRRTGA 1144
QAIG GWG GW++ A + +++ ++H +YR TG
Sbjct: 573 QAIGFSGWGTCGWLAAIGFFQINVGAAVVMLLPAIMFSVSAAIMAIVIMKVHRIYRGTGG 632
Query: 1145 SFQKAQQEFAAGVFSNP 1195
SFQKAQ E++ G + NP
Sbjct: 633 SFQKAQTEWSTGAWRNP 649
>ref|XP_003128546.1| PREDICTED: secretory carrier-associated membrane protein 2-like,
partial [Sus scrofa].
Length = 170
Score = 123 bits (308), Expect = 2e-28
Identities = 60/137 (43%), Positives = 80/137 (58%)
Frame = +2
Query: 782 FCVETNTGSGFGLSILWILLFTPCSFVCWYRPMYKAXXXXXXXXXXXXXXXXXVQDVLYV 961
F V+T+ G FGLSILW ++FTPC+F+CWYRP+YKA Q +Y+
Sbjct: 16 FLVDTSRGVDFGLSILWFVIFTPCAFLCWYRPIYKAFRSDNSFSFFVFFFVFFCQIGIYI 75
Query: 962 LQAIGIPGWGFSGWISXXXXXXXXXXXXXXXXXXXXXXXGIAVLGIVMLKRIHSLYRRTG 1141
+Q +GIP G SGWI+ AVL + +LKR+HSLYRRTG
Sbjct: 76 IQLVGIPSLGDSGWIAALSTLKEDLAVSIIMMVVAGFFTLCAVLSLFLLKRVHSLYRRTG 135
Query: 1142 ASFQKAQQEFAAGVFSN 1192
ASFQ+AQ+EF+ G+FS+
Sbjct: 136 ASFQQAQEEFSQGIFSS 152
>ref|XP_001924761.1| PREDICTED: secretory carrier-associated membrane protein 2-like
[Sus scrofa].
Length = 246
Score = 107 bits (267), Expect = 1e-23
Identities = 64/165 (38%), Positives = 86/165 (52%)
Frame = +2
Query: 242 NPFAEPGELDNPFQDPAVIQHRPSPQYATLDVYNPFETRXXXXXXXXXXXXXXXXXXXXX 421
NPFA+P ++ NPFQDP+V Q +PQ L +NPF
Sbjct: 7 NPFADPVDV-NPFQDPSVTQLTNAPQ-GGLAEFNPFSETNAATTVPVTQLPGPSQPAV-- 62
Query: 422 LQSSRKLSPTEPKNYGSYXXXXXXXXXXXXXXXXXXELNRKAEELDRRERELQHAALGGT 601
LQ S + PT+P EL+RKA EL+R+ERELQ+ +
Sbjct: 63 LQPS--VEPTQPTPQA------VASAAQASLLRQQEELDRKAAELERKERELQNT-VANL 113
Query: 602 ATRQNNWPPLPSFCPVQPCFFQDISMEIPQEFQKTVSTMYYLWMC 736
R+NNWPPLP +CP++PCF+QD S EIP ++Q+ +YYLWMC
Sbjct: 114 HVRENNWPPLPIWCPIKPCFYQDFSTEIPADYQRICKMLYYLWMC 158
Database: RefSeq44_SP.fasta
Posted date: Nov 15, 2010 4:36 PM
Number of letters in database: 9,542,844
Number of sequences in database: 20,576
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 20576
Number of Hits to DB: 26,959,170
Number of extensions: 723301
Number of successful extensions: 3054
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 3026
Number of HSP's successfully gapped: 7
Length of query: 469
Length of database: 9,542,844
Length adjustment: 101
Effective length of query: 368
Effective length of database: 7,464,668
Effective search space: 2746997824
Effective search space used: 2746997824
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)