Search to RefSeqBP_Rel44
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20070806C-001423
(1521 letters)
Database: RefSeq44_BP.fasta
33,615 sequences; 18,071,151 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001179355.1| protoporphyrinogen oxidase [Bos taurus]. 716 0.0
Alignment gi|XP_002685897.1| PREDICTED: protoporphyrinogen oxidase [Bos t... 716 0.0
>ref|NP_001179355.1| protoporphyrinogen oxidase [Bos taurus].
Length = 477
Score = 716 bits (1849), Expect = 0.0
Identities = 367/428 (85%), Positives = 384/428 (89%), Gaps = 1/428 (0%)
Frame = +1
Query: 226 MGRTVVVLGGGISGLAASYHLSRAPCPPKVVLVEGSERLGGWIRSIRGPDGAVFELGPRG 405
MGRTVVVLGGGISGLAASY+LSRAPCPPKVVLVEGSERLGGWIRS+RGPDGA+FELGPRG
Sbjct: 1 MGRTVVVLGGGISGLAASYYLSRAPCPPKVVLVEGSERLGGWIRSVRGPDGAIFELGPRG 60
Query: 406 IRPAGALGARTLLMVSELGLDSEVLPVRGDHPASKNRFLYVDGALHPLPSGFRGLFCRSP 585
IRPAGALGARTLL+VSELGLDSEVLPVRGDHPA++NRFLYV GALH LPSG RGL SP
Sbjct: 61 IRPAGALGARTLLLVSELGLDSEVLPVRGDHPAAQNRFLYVGGALHALPSGIRGLLRPSP 120
Query: 586 PFSKPLFWAGLRELTTPRGKDPDESVHSFAQRRLGPEVASLAMDSLCRGVFAGNSRELSI 765
PFSKPLFWAGLR+LTTPRGKDPDE+VHSFAQRRLGPEVASLAMDSLCRGVFAGNSRELSI
Sbjct: 121 PFSKPLFWAGLRDLTTPRGKDPDETVHSFAQRRLGPEVASLAMDSLCRGVFAGNSRELSI 180
Query: 766 RSCFPSLFQAEQTHRSVLLGLLMGAGRSPQPDSALIRQARAERWSQWSLRGGLETLPQAL 945
RSCFPSLFQAEQTHRS+LLGLL+GAGR PQ DSALIRQA+AERWSQWSLRGGLETLPQAL
Sbjct: 181 RSCFPSLFQAEQTHRSILLGLLLGAGRGPQLDSALIRQAQAERWSQWSLRGGLETLPQAL 240
Query: 946 NAHLTSRGVSVLRGQPVSGLSLQAEGCWKVSLGDSSLEADHIISAVPASVLSKXXXXXXX 1125
+AHLTSRGVSVL+GQPV GLSLQAEG WKVSL DSSLEADHIISA+PASVLSK
Sbjct: 241 HAHLTSRGVSVLQGQPVCGLSLQAEGRWKVSLEDSSLEADHIISAIPASVLSKLLPAEAT 300
Query: 1126 XXXXXXSTINAVSVAVVNLQYRGARLPVQGFGHLVPSSEDPVILGIVYDSVAFPEXDGSP 1305
STI AVSVAVVNLQYRGARLPVQGFGHLVPSSEDPVILGIVYDSVAFPE DGS
Sbjct: 301 PLARALSTITAVSVAVVNLQYRGARLPVQGFGHLVPSSEDPVILGIVYDSVAFPEQDGSL 360
Query: 1306 SGLRVTVMLGGSWVQTLEARSCVLSXELFXQEAEKAVATQLGLRSHQS-LLGSSTQNCIP 1482
GLR+TVMLGGSW+QTLEAR CVLS EL QEAEKA ATQLGL S L +N IP
Sbjct: 361 PGLRLTVMLGGSWLQTLEARGCVLSQELLQQEAEKAAATQLGLNEPPSHCLVHLHKNSIP 420
Query: 1483 QYTLGHWQ 1506
QYTLGHWQ
Sbjct: 421 QYTLGHWQ 428
>ref|XP_002685897.1| PREDICTED: protoporphyrinogen oxidase [Bos taurus].
Length = 477
Score = 716 bits (1849), Expect = 0.0
Identities = 367/428 (85%), Positives = 384/428 (89%), Gaps = 1/428 (0%)
Frame = +1
Query: 226 MGRTVVVLGGGISGLAASYHLSRAPCPPKVVLVEGSERLGGWIRSIRGPDGAVFELGPRG 405
MGRTVVVLGGGISGLAASY+LSRAPCPPKVVLVEGSERLGGWIRS+RGPDGA+FELGPRG
Sbjct: 1 MGRTVVVLGGGISGLAASYYLSRAPCPPKVVLVEGSERLGGWIRSVRGPDGAIFELGPRG 60
Query: 406 IRPAGALGARTLLMVSELGLDSEVLPVRGDHPASKNRFLYVDGALHPLPSGFRGLFCRSP 585
IRPAGALGARTLL+VSELGLDSEVLPVRGDHPA++NRFLYV GALH LPSG RGL SP
Sbjct: 61 IRPAGALGARTLLLVSELGLDSEVLPVRGDHPAAQNRFLYVGGALHALPSGIRGLLRPSP 120
Query: 586 PFSKPLFWAGLRELTTPRGKDPDESVHSFAQRRLGPEVASLAMDSLCRGVFAGNSRELSI 765
PFSKPLFWAGLR+LTTPRGKDPDE+VHSFAQRRLGPEVASLAMDSLCRGVFAGNSRELSI
Sbjct: 121 PFSKPLFWAGLRDLTTPRGKDPDETVHSFAQRRLGPEVASLAMDSLCRGVFAGNSRELSI 180
Query: 766 RSCFPSLFQAEQTHRSVLLGLLMGAGRSPQPDSALIRQARAERWSQWSLRGGLETLPQAL 945
RSCFPSLFQAEQTHRS+LLGLL+GAGR PQ DSALIRQA+AERWSQWSLRGGLETLPQAL
Sbjct: 181 RSCFPSLFQAEQTHRSILLGLLLGAGRGPQLDSALIRQAQAERWSQWSLRGGLETLPQAL 240
Query: 946 NAHLTSRGVSVLRGQPVSGLSLQAEGCWKVSLGDSSLEADHIISAVPASVLSKXXXXXXX 1125
+AHLTSRGVSVL+GQPV GLSLQAEG WKVSL DSSLEADHIISA+PASVLSK
Sbjct: 241 HAHLTSRGVSVLQGQPVCGLSLQAEGRWKVSLEDSSLEADHIISAIPASVLSKLLPAEAT 300
Query: 1126 XXXXXXSTINAVSVAVVNLQYRGARLPVQGFGHLVPSSEDPVILGIVYDSVAFPEXDGSP 1305
STI AVSVAVVNLQYRGARLPVQGFGHLVPSSEDPVILGIVYDSVAFPE DGS
Sbjct: 301 PLARALSTITAVSVAVVNLQYRGARLPVQGFGHLVPSSEDPVILGIVYDSVAFPEQDGSL 360
Query: 1306 SGLRVTVMLGGSWVQTLEARSCVLSXELFXQEAEKAVATQLGLRSHQS-LLGSSTQNCIP 1482
GLR+TVMLGGSW+QTLEAR CVLS EL QEAEKA ATQLGL S L +N IP
Sbjct: 361 PGLRLTVMLGGSWLQTLEARGCVLSQELLQQEAEKAAATQLGLNEPPSHCLVHLHKNSIP 420
Query: 1483 QYTLGHWQ 1506
QYTLGHWQ
Sbjct: 421 QYTLGHWQ 428
Database: RefSeq44_BP.fasta
Posted date: Nov 15, 2010 4:36 PM
Number of letters in database: 18,071,151
Number of sequences in database: 33,615
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33615
Number of Hits to DB: 65,612,109
Number of extensions: 1996197
Number of successful extensions: 6927
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 6915
Number of HSP's successfully gapped: 2
Length of query: 507
Length of database: 18,071,151
Length adjustment: 107
Effective length of query: 400
Effective length of database: 14,474,346
Effective search space: 5789738400
Effective search space used: 5789738400
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqCP_Rel44
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20070806C-001423
(1521 letters)
Database: RefSeq44_CP.fasta
33,359 sequences; 18,921,627 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_536137.2| PREDICTED: similar to Protoporphyrinogen oxidas... 702 0.0
>ref|XP_536137.2| PREDICTED: similar to Protoporphyrinogen oxidase (PPO) [Canis
familiaris].
Length = 477
Score = 702 bits (1813), Expect = 0.0
Identities = 358/428 (83%), Positives = 377/428 (88%), Gaps = 1/428 (0%)
Frame = +1
Query: 226 MGRTVVVLGGGISGLAASYHLSRAPCPPKVVLVEGSERLGGWIRSIRGPDGAVFELGPRG 405
MGRTVVVLGGGISGLAA YHLSRAPC PKVVLVEGSERLGGWIRS+RGP GAVFELGPRG
Sbjct: 1 MGRTVVVLGGGISGLAAGYHLSRAPCAPKVVLVEGSERLGGWIRSVRGPGGAVFELGPRG 60
Query: 406 IRPAGALGARTLLMVSELGLDSEVLPVRGDHPASKNRFLYVDGALHPLPSGFRGLFCRSP 585
IRPAGA GARTLL+VSELGLDSEVLPVRGDHPA++NRFLYV GALH LPSG RGLF SP
Sbjct: 61 IRPAGAPGARTLLLVSELGLDSEVLPVRGDHPAAQNRFLYVGGALHALPSGLRGLFRPSP 120
Query: 586 PFSKPLFWAGLRELTTPRGKDPDESVHSFAQRRLGPEVASLAMDSLCRGVFAGNSRELSI 765
PFSKPLFWAGLRELTTPRGKDPDE+VHSFAQRRLGPEVASLAMDSLCRGVFAGNSRELS+
Sbjct: 121 PFSKPLFWAGLRELTTPRGKDPDETVHSFAQRRLGPEVASLAMDSLCRGVFAGNSRELSV 180
Query: 766 RSCFPSLFQAEQTHRSVLLGLLMGAGRSPQPDSALIRQARAERWSQWSLRGGLETLPQAL 945
RSCFPSLFQAEQ+HRSVLLGLL+GAG SP+PDSALIRQARAERWSQWSLRGGLETLPQAL
Sbjct: 181 RSCFPSLFQAEQSHRSVLLGLLLGAGHSPRPDSALIRQARAERWSQWSLRGGLETLPQAL 240
Query: 946 NAHLTSRGVSVLRGQPVSGLSLQAEGCWKVSLGDSSLEADHIISAVPASVLSKXXXXXXX 1125
N +LTSRGVSVLRGQPV GL L G WKVSLGD SLEADH+ISAVPASVLSK
Sbjct: 241 NTYLTSRGVSVLRGQPVCGLGLLPGGRWKVSLGDGSLEADHVISAVPASVLSKLLPAQAA 300
Query: 1126 XXXXXXSTINAVSVAVVNLQYRGARLPVQGFGHLVPSSEDPVILGIVYDSVAFPEXDGSP 1305
S I AVSV VVNLQYRGARLPVQGFGHLVPSSEDP +LGIVYDSVAFPE DGSP
Sbjct: 301 PLAHALSAITAVSVVVVNLQYRGARLPVQGFGHLVPSSEDPGVLGIVYDSVAFPEQDGSP 360
Query: 1306 SGLRVTVMLGGSWVQTLEARSCVLSXELFXQEAEKAVATQLGLRSHQS-LLGSSTQNCIP 1482
GLRVTVMLGGSW+QTLEAR +LS ELF Q+A++A ATQLGL+ S L +NCIP
Sbjct: 361 PGLRVTVMLGGSWLQTLEARGGLLSRELFQQQAQQAAATQLGLKEPPSHCLVHLHKNCIP 420
Query: 1483 QYTLGHWQ 1506
QYTLGHWQ
Sbjct: 421 QYTLGHWQ 428
Database: RefSeq44_CP.fasta
Posted date: Nov 15, 2010 4:36 PM
Number of letters in database: 18,921,627
Number of sequences in database: 33,359
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33359
Number of Hits to DB: 66,962,362
Number of extensions: 2006664
Number of successful extensions: 6809
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 6794
Number of HSP's successfully gapped: 1
Length of query: 507
Length of database: 18,921,627
Length adjustment: 107
Effective length of query: 400
Effective length of database: 15,352,214
Effective search space: 6140885600
Effective search space used: 6140885600
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqHP_Rel44
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20070806C-001423
(1521 letters)
Database: RefSeq44_HP.fasta
33,950 sequences; 18,324,212 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_000300.1| protoporphyrinogen oxidase [Homo sapiens]. 706 0.0
Alignment gi|NP_001116236.1| protoporphyrinogen oxidase [Homo sapiens]. 706 0.0
>ref|NP_000300.1| protoporphyrinogen oxidase [Homo sapiens].
Length = 477
Score = 706 bits (1821), Expect = 0.0
Identities = 357/428 (83%), Positives = 379/428 (88%), Gaps = 1/428 (0%)
Frame = +1
Query: 226 MGRTVVVLGGGISGLAASYHLSRAPCPPKVVLVEGSERLGGWIRSIRGPDGAVFELGPRG 405
MGRTVVVLGGGISGLAASYHLSRAPCPPKVVLVE SERLGGWIRS+RGP+GA+FELGPRG
Sbjct: 1 MGRTVVVLGGGISGLAASYHLSRAPCPPKVVLVESSERLGGWIRSVRGPNGAIFELGPRG 60
Query: 406 IRPAGALGARTLLMVSELGLDSEVLPVRGDHPASKNRFLYVDGALHPLPSGFRGLFCRSP 585
IRPAGALGARTLL+VSELGLDSEVLPVRGDHPA++NRFLYV GALH LP+G RGL SP
Sbjct: 61 IRPAGALGARTLLLVSELGLDSEVLPVRGDHPAAQNRFLYVGGALHALPTGLRGLLRPSP 120
Query: 586 PFSKPLFWAGLRELTTPRGKDPDESVHSFAQRRLGPEVASLAMDSLCRGVFAGNSRELSI 765
PFSKPLFWAGLRELT PRGK+PDE+VHSFAQRRLGPEVASLAMDSLCRGVFAGNSRELSI
Sbjct: 121 PFSKPLFWAGLRELTKPRGKEPDETVHSFAQRRLGPEVASLAMDSLCRGVFAGNSRELSI 180
Query: 766 RSCFPSLFQAEQTHRSVLLGLLMGAGRSPQPDSALIRQARAERWSQWSLRGGLETLPQAL 945
RSCFPSLFQAEQTHRS+LLGLL+GAGR+PQPDSALIRQA AERWSQWSLRGGLE LPQAL
Sbjct: 181 RSCFPSLFQAEQTHRSILLGLLLGAGRTPQPDSALIRQALAERWSQWSLRGGLEMLPQAL 240
Query: 946 NAHLTSRGVSVLRGQPVSGLSLQAEGCWKVSLGDSSLEADHIISAVPASVLSKXXXXXXX 1125
HLTSRGVSVLRGQPV GLSLQAEG WKVSL DSSLEADH+ISA+PASVLS+
Sbjct: 241 ETHLTSRGVSVLRGQPVCGLSLQAEGRWKVSLRDSSLEADHVISAIPASVLSELLPAEAA 300
Query: 1126 XXXXXXSTINAVSVAVVNLQYRGARLPVQGFGHLVPSSEDPVILGIVYDSVAFPEXDGSP 1305
S I AVSVAVVNLQY+GA LPVQGFGHLVPSSEDP +LGIVYDSVAFPE DGSP
Sbjct: 301 PLARALSAITAVSVAVVNLQYQGAHLPVQGFGHLVPSSEDPGVLGIVYDSVAFPEQDGSP 360
Query: 1306 SGLRVTVMLGGSWVQTLEARSCVLSXELFXQEAEKAVATQLGLRSHQS-LLGSSTQNCIP 1482
GLRVTVMLGGSW+QTLEA CVLS ELF Q A++A ATQLGL+ S L +NCIP
Sbjct: 361 PGLRVTVMLGGSWLQTLEASGCVLSQELFQQRAQEAAATQLGLKEMPSHCLVHLHKNCIP 420
Query: 1483 QYTLGHWQ 1506
QYTLGHWQ
Sbjct: 421 QYTLGHWQ 428
>ref|NP_001116236.1| protoporphyrinogen oxidase [Homo sapiens].
Length = 477
Score = 706 bits (1821), Expect = 0.0
Identities = 357/428 (83%), Positives = 379/428 (88%), Gaps = 1/428 (0%)
Frame = +1
Query: 226 MGRTVVVLGGGISGLAASYHLSRAPCPPKVVLVEGSERLGGWIRSIRGPDGAVFELGPRG 405
MGRTVVVLGGGISGLAASYHLSRAPCPPKVVLVE SERLGGWIRS+RGP+GA+FELGPRG
Sbjct: 1 MGRTVVVLGGGISGLAASYHLSRAPCPPKVVLVESSERLGGWIRSVRGPNGAIFELGPRG 60
Query: 406 IRPAGALGARTLLMVSELGLDSEVLPVRGDHPASKNRFLYVDGALHPLPSGFRGLFCRSP 585
IRPAGALGARTLL+VSELGLDSEVLPVRGDHPA++NRFLYV GALH LP+G RGL SP
Sbjct: 61 IRPAGALGARTLLLVSELGLDSEVLPVRGDHPAAQNRFLYVGGALHALPTGLRGLLRPSP 120
Query: 586 PFSKPLFWAGLRELTTPRGKDPDESVHSFAQRRLGPEVASLAMDSLCRGVFAGNSRELSI 765
PFSKPLFWAGLRELT PRGK+PDE+VHSFAQRRLGPEVASLAMDSLCRGVFAGNSRELSI
Sbjct: 121 PFSKPLFWAGLRELTKPRGKEPDETVHSFAQRRLGPEVASLAMDSLCRGVFAGNSRELSI 180
Query: 766 RSCFPSLFQAEQTHRSVLLGLLMGAGRSPQPDSALIRQARAERWSQWSLRGGLETLPQAL 945
RSCFPSLFQAEQTHRS+LLGLL+GAGR+PQPDSALIRQA AERWSQWSLRGGLE LPQAL
Sbjct: 181 RSCFPSLFQAEQTHRSILLGLLLGAGRTPQPDSALIRQALAERWSQWSLRGGLEMLPQAL 240
Query: 946 NAHLTSRGVSVLRGQPVSGLSLQAEGCWKVSLGDSSLEADHIISAVPASVLSKXXXXXXX 1125
HLTSRGVSVLRGQPV GLSLQAEG WKVSL DSSLEADH+ISA+PASVLS+
Sbjct: 241 ETHLTSRGVSVLRGQPVCGLSLQAEGRWKVSLRDSSLEADHVISAIPASVLSELLPAEAA 300
Query: 1126 XXXXXXSTINAVSVAVVNLQYRGARLPVQGFGHLVPSSEDPVILGIVYDSVAFPEXDGSP 1305
S I AVSVAVVNLQY+GA LPVQGFGHLVPSSEDP +LGIVYDSVAFPE DGSP
Sbjct: 301 PLARALSAITAVSVAVVNLQYQGAHLPVQGFGHLVPSSEDPGVLGIVYDSVAFPEQDGSP 360
Query: 1306 SGLRVTVMLGGSWVQTLEARSCVLSXELFXQEAEKAVATQLGLRSHQS-LLGSSTQNCIP 1482
GLRVTVMLGGSW+QTLEA CVLS ELF Q A++A ATQLGL+ S L +NCIP
Sbjct: 361 PGLRVTVMLGGSWLQTLEASGCVLSQELFQQRAQEAAATQLGLKEMPSHCLVHLHKNCIP 420
Query: 1483 QYTLGHWQ 1506
QYTLGHWQ
Sbjct: 421 QYTLGHWQ 428
Database: RefSeq44_HP.fasta
Posted date: Nov 15, 2010 4:36 PM
Number of letters in database: 18,324,212
Number of sequences in database: 33,950
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33950
Number of Hits to DB: 66,050,015
Number of extensions: 1986532
Number of successful extensions: 6879
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 6866
Number of HSP's successfully gapped: 2
Length of query: 507
Length of database: 18,324,212
Length adjustment: 107
Effective length of query: 400
Effective length of database: 14,691,562
Effective search space: 5876624800
Effective search space used: 5876624800
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqMP_Rel44
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20070806C-001423
(1521 letters)
Database: RefSeq44_MP.fasta
29,866 sequences; 15,452,059 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_032937.1| protoporphyrinogen oxidase [Mus musculus]. 678 0.0
>ref|NP_032937.1| protoporphyrinogen oxidase [Mus musculus].
Length = 477
Score = 678 bits (1750), Expect = 0.0
Identities = 343/428 (80%), Positives = 371/428 (86%), Gaps = 1/428 (0%)
Frame = +1
Query: 226 MGRTVVVLGGGISGLAASYHLSRAPCPPKVVLVEGSERLGGWIRSIRGPDGAVFELGPRG 405
MGRTV+VLGGGISGLAASYHL R P PPKV+LVEGS+RLGGWIRSIRG DGA+FELGPRG
Sbjct: 1 MGRTVIVLGGGISGLAASYHLIRGPSPPKVILVEGSKRLGGWIRSIRGSDGAIFELGPRG 60
Query: 406 IRPAGALGARTLLMVSELGLDSEVLPVRGDHPASKNRFLYVDGALHPLPSGFRGLFCRSP 585
IRPAGALGARTLL+VSELGL+SEVLPVRGDHPA++NRFLYV G LHPLPSG RGL SP
Sbjct: 61 IRPAGALGARTLLLVSELGLESEVLPVRGDHPAAQNRFLYVGGTLHPLPSGLRGLLRPSP 120
Query: 586 PFSKPLFWAGLRELTTPRGKDPDESVHSFAQRRLGPEVASLAMDSLCRGVFAGNSRELSI 765
PFSKPLFWAGLREL PRGK+PDE+VHSFAQRRLGPEVASLAMDSLCRGVFAGNSRELSI
Sbjct: 121 PFSKPLFWAGLRELLKPRGKEPDETVHSFAQRRLGPEVASLAMDSLCRGVFAGNSRELSI 180
Query: 766 RSCFPSLFQAEQTHRSVLLGLLMGAGRSPQPDSALIRQARAERWSQWSLRGGLETLPQAL 945
RSCFPSLFQAEQTHRS+LLGLL+GAG+SPQPDS+LIRQARAERWSQWSLRGGLE LPQAL
Sbjct: 181 RSCFPSLFQAEQTHRSILLGLLLGAGQSPQPDSSLIRQARAERWSQWSLRGGLEVLPQAL 240
Query: 946 NAHLTSRGVSVLRGQPVSGLSLQAEGCWKVSLGDSSLEADHIISAVPASVLSKXXXXXXX 1125
+ HL S+GV+VL GQPV GLSLQ EG WKVSLGDSSLEADHIISA+PAS LSK
Sbjct: 241 HNHLASKGVTVLSGQPVCGLSLQPEGRWKVSLGDSSLEADHIISAIPASELSKLLPAEAA 300
Query: 1126 XXXXXXSTINAVSVAVVNLQYRGARLPVQGFGHLVPSSEDPVILGIVYDSVAFPEXDGSP 1305
STI AVSVAVVNLQYRGA LPVQGFGHLVPSSEDP +LGIVYDSVAFPE DG+P
Sbjct: 301 PLARILSTIKAVSVAVVNLQYRGACLPVQGFGHLVPSSEDPTVLGIVYDSVAFPEQDGNP 360
Query: 1306 SGLRVTVMLGGSWVQTLEARSCVLSXELFXQEAEKAVATQLGLRSHQS-LLGSSTQNCIP 1482
LRVTVMLGG W+Q L+A LS ELF Q+A++A ATQLGL+ S L +NCIP
Sbjct: 361 PSLRVTVMLGGYWLQKLKAAGHQLSPELFQQQAQEAAATQLGLKEPPSHCLVHLHKNCIP 420
Query: 1483 QYTLGHWQ 1506
QYT+GHWQ
Sbjct: 421 QYTIGHWQ 428
Database: RefSeq44_MP.fasta
Posted date: Nov 15, 2010 4:36 PM
Number of letters in database: 15,452,059
Number of sequences in database: 29,866
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 29866
Number of Hits to DB: 54,673,689
Number of extensions: 1615650
Number of successful extensions: 5292
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 5267
Number of HSP's successfully gapped: 1
Length of query: 507
Length of database: 15,452,059
Length adjustment: 106
Effective length of query: 401
Effective length of database: 12,286,263
Effective search space: 4926791463
Effective search space used: 4926791463
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqSP_Rel44
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20070806C-001423
(1521 letters)
Database: RefSeq44_SP.fasta
20,576 sequences; 9,542,844 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_001927869.2| PREDICTED: protoporphyrinogen oxidase [Sus s... 785 0.0
>ref|XP_001927869.2| PREDICTED: protoporphyrinogen oxidase [Sus scrofa].
Length = 477
Score = 785 bits (2026), Expect = 0.0
Identities = 400/428 (93%), Positives = 403/428 (94%), Gaps = 1/428 (0%)
Frame = +1
Query: 226 MGRTVVVLGGGISGLAASYHLSRAPCPPKVVLVEGSERLGGWIRSIRGPDGAVFELGPRG 405
MGRTVVVLGGGISGLAASYHLSRAPCPPKVVLVEGSERLGGWIRSIRGPDGAVFELGPRG
Sbjct: 1 MGRTVVVLGGGISGLAASYHLSRAPCPPKVVLVEGSERLGGWIRSIRGPDGAVFELGPRG 60
Query: 406 IRPAGALGARTLLMVSELGLDSEVLPVRGDHPASKNRFLYVDGALHPLPSGFRGLFCRSP 585
IRPAGALGARTLLMVSELGLDSEVLPVRGDHPASKNRFLYVDGALHPLPSGFRGLFCRSP
Sbjct: 61 IRPAGALGARTLLMVSELGLDSEVLPVRGDHPASKNRFLYVDGALHPLPSGFRGLFCRSP 120
Query: 586 PFSKPLFWAGLRELTTPRGKDPDESVHSFAQRRLGPEVASLAMDSLCRGVFAGNSRELSI 765
PFSKPLFWAGLRELTTPRGKDPDESVHSFAQRRLGPEVASLAMDSLCRGVFAGNSRELSI
Sbjct: 121 PFSKPLFWAGLRELTTPRGKDPDESVHSFAQRRLGPEVASLAMDSLCRGVFAGNSRELSI 180
Query: 766 RSCFPSLFQAEQTHRSVLLGLLMGAGRSPQPDSALIRQARAERWSQWSLRGGLETLPQAL 945
RSCFPSLFQAEQTHRSVLLGLLMGAGRSPQPDSALIRQARAERWSQWSLRGGLETLPQAL
Sbjct: 181 RSCFPSLFQAEQTHRSVLLGLLMGAGRSPQPDSALIRQARAERWSQWSLRGGLETLPQAL 240
Query: 946 NAHLTSRGVSVLRGQPVSGLSLQAEGCWKVSLGDSSLEADHIISAVPASVLSKXXXXXXX 1125
NAHLTSRGVSVLRGQPVSGLSLQAEGCWKVSLGDSSLEADHIISAVPASVLSK
Sbjct: 241 NAHLTSRGVSVLRGQPVSGLSLQAEGCWKVSLGDSSLEADHIISAVPASVLSKLLPPEAA 300
Query: 1126 XXXXXXSTINAVSVAVVNLQYRGARLPVQGFGHLVPSSEDPVILGIVYDSVAFPEXDGSP 1305
STINAVSVAVVNLQYRGARLPVQGFGHLVPSSEDPVILGIVYDSVAFPE DGSP
Sbjct: 301 PLAHALSTINAVSVAVVNLQYRGARLPVQGFGHLVPSSEDPVILGIVYDSVAFPEQDGSP 360
Query: 1306 SGLRVTVMLGGSWVQTLEARSCVLSXELFXQEAEKAVATQLGLRSHQS-LLGSSTQNCIP 1482
SGLRVTVMLGGSW+QTLEARSCVLS ELF QEAEKAVATQLGL+ S L +NCIP
Sbjct: 361 SGLRVTVMLGGSWLQTLEARSCVLSQELFQQEAEKAVATQLGLKEPPSHCLVHLHKNCIP 420
Query: 1483 QYTLGHWQ 1506
QYTLGHWQ
Sbjct: 421 QYTLGHWQ 428
Database: RefSeq44_SP.fasta
Posted date: Nov 15, 2010 4:36 PM
Number of letters in database: 9,542,844
Number of sequences in database: 20,576
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 20576
Number of Hits to DB: 35,001,628
Number of extensions: 1070400
Number of successful extensions: 3714
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 3706
Number of HSP's successfully gapped: 1
Length of query: 507
Length of database: 9,542,844
Length adjustment: 102
Effective length of query: 405
Effective length of database: 7,444,092
Effective search space: 3014857260
Effective search space used: 3014857260
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)