Search to RefSeqBP_Rel44
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20070806C-001536
(1574 letters)
Database: RefSeq44_BP.fasta
33,615 sequences; 18,071,151 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001095726.1| lanC-like protein 2 [Bos taurus]. 659 0.0
Alignment gi|NP_001069695.1| lanC-like protein 1 [Bos taurus]. 369 e-119
Alignment gi|XP_002700274.1| PREDICTED: LanC lantibiotic synthetase compo... 153 2e-43
Alignment gi|XP_002706107.1| PREDICTED: LanC lantibiotic synthetase compo... 125 6e-35
>ref|NP_001095726.1| lanC-like protein 2 [Bos taurus].
Length = 433
Score = 659 bits (1701), Expect(2) = 0.0
Identities = 319/352 (90%), Positives = 330/352 (93%)
Frame = +3
Query: 345 MEERAFPNPFPDYXXXXXXXXXXXXXXXXXLTPEELGLPFHSDGKIIHNFTRRIQSKIKD 524
ME+RAFPNPFPDY L+PEELGLPFHSDGKII+NFTRRIQ+KIKD
Sbjct: 1 MEDRAFPNPFPDYEAAAERQAEEPPCSRTPLSPEELGLPFHSDGKIINNFTRRIQTKIKD 60
Query: 525 LLQQMEEGLKTADPHDCSAYTGWTGIALLYLQLYRVTCDQNYLLRSLDYVKRTLRNLNGR 704
LLQQMEEGLKTADPHDCSAYTGWTGIALLYLQLYRVTCDQ+YLLRSLDYVKRTLRNLNGR
Sbjct: 61 LLQQMEEGLKTADPHDCSAYTGWTGIALLYLQLYRVTCDQSYLLRSLDYVKRTLRNLNGR 120
Query: 705 RVTFLCGDAGPLAVGAVVYHKLKSDGESQECITKLLQLQRTIVCRDSDLPDELLFGRAGY 884
RVTFLCGDAGPLAVGAVVYHKLKSD ESQECITKLLQLQRTIVCRDSDLPDELL+GRAGY
Sbjct: 121 RVTFLCGDAGPLAVGAVVYHKLKSDCESQECITKLLQLQRTIVCRDSDLPDELLYGRAGY 180
Query: 885 LYALLYVNTEMGPGAVCESAIKEVVDAIIDSGKTLSKEERKAERCPLLYQWHRKQYVGAA 1064
LYALLYVNTE+GPGAVCESAIKEVV+AII+SGK LSKEE+K ERCPLLYQWHRKQYVGAA
Sbjct: 181 LYALLYVNTEIGPGAVCESAIKEVVNAIIESGKALSKEEKKVERCPLLYQWHRKQYVGAA 240
Query: 1065 HGMAGIYYMLMQPAAKVDQETLTEMVKPSIDYMRHKRFRSGNYPSSLSNETDRLVHWCHG 1244
HGMAGIYYMLMQPAAKVDQETLTEMVKPSIDYMRHKRFRSGNYPSSLSNETDRLVHWCHG
Sbjct: 241 HGMAGIYYMLMQPAAKVDQETLTEMVKPSIDYMRHKRFRSGNYPSSLSNETDRLVHWCHG 300
Query: 1245 APGVIHTLMQAYKVFKEEKYLTDAVECSDVIWQRGLLRKGYGICHGTAGNGY 1400
APGVIH LMQA+KVFKEEKYL DAVECSDVIWQRGLLRKGYGICHGTAGNGY
Sbjct: 301 APGVIHVLMQAHKVFKEEKYLKDAVECSDVIWQRGLLRKGYGICHGTAGNGY 352
Score = 97.8 bits (242), Expect(2) = 0.0
Identities = 44/50 (88%), Positives = 45/50 (90%)
Frame = +2
Query: 1424 TQDKKYLYRALQFAEWCLEYXAHGCRISDRPYSLFEGMGGRIHFLSDILA 1573
TQDKKYLYRA +FAEWCLEY AHGCRI DRPYSLFEGM G IHFLSDILA
Sbjct: 361 TQDKKYLYRACKFAEWCLEYGAHGCRIPDRPYSLFEGMAGTIHFLSDILA 410
>ref|NP_001069695.1| lanC-like protein 1 [Bos taurus].
Length = 399
Score = 369 bits (948), Expect(2) = e-119
Identities = 174/352 (49%), Positives = 240/352 (68%)
Frame = +3
Query: 345 MEERAFPNPFPDYXXXXXXXXXXXXXXXXXLTPEELGLPFHSDGKIIHNFTRRIQSKIKD 524
M +RAFPNP+ DY F S G++ F++R+ +KI++
Sbjct: 1 MAQRAFPNPYADYNKSLAEGY------------------FDSAGRLTPEFSQRLNNKIRE 42
Query: 525 LLQQMEEGLKTADPHDCSAYTGWTGIALLYLQLYRVTCDQNYLLRSLDYVKRTLRNLNGR 704
LLQQME GLK+ADP D + YTGW GIA+LYL LY V D NYL + YVK++L +L+
Sbjct: 43 LLQQMERGLKSADPRDSTVYTGWAGIAVLYLHLYDVFGDPNYLQMAHGYVKQSLNSLSKH 102
Query: 705 RVTFLCGDAGPLAVGAVVYHKLKSDGESQECITKLLQLQRTIVCRDSDLPDELLFGRAGY 884
+TFLCGD GPLAV AVV+HK+ ++ +++ECIT+L+ L + D P E+L+GR GY
Sbjct: 103 SITFLCGDGGPLAVAAVVHHKMNNEKQAEECITRLIHLNKI----DRHAPSEMLYGRMGY 158
Query: 885 LYALLYVNTEMGPGAVCESAIKEVVDAIIDSGKTLSKEERKAERCPLLYQWHRKQYVGAA 1064
+ ALL+VN G + +S I+++ + ++ SG+ L+++ R PL+Y+W+++ YVGAA
Sbjct: 159 ISALLFVNKNFGEEKIPQSHIQQICETVLTSGEDLARKRRFTGETPLMYEWYQEYYVGAA 218
Query: 1065 HGMAGIYYMLMQPAAKVDQETLTEMVKPSIDYMRHKRFRSGNYPSSLSNETDRLVHWCHG 1244
HG+AGIYY LMQP+ +V L +VKPS+DY+ +F SGNYP + + D L+HWCHG
Sbjct: 219 HGLAGIYYYLMQPSLQVSHAKLHNLVKPSVDYVCQLKFPSGNYPPCVDDSRDLLIHWCHG 278
Query: 1245 APGVIHTLMQAYKVFKEEKYLTDAVECSDVIWQRGLLRKGYGICHGTAGNGY 1400
APGVI+ L QAYKVFKEE+YL DA +C+DVIWQ GLL+KGYG+CHGTAGN Y
Sbjct: 279 APGVIYMLTQAYKVFKEERYLNDAYQCADVIWQYGLLKKGYGLCHGTAGNAY 330
Score = 80.9 bits (198), Expect(2) = e-119
Identities = 34/49 (69%), Positives = 40/49 (81%)
Frame = +2
Query: 1424 TQDKKYLYRALQFAEWCLEYXAHGCRISDRPYSLFEGMGGRIHFLSDIL 1570
TQD KYLYRA +FAEWCL+Y HGCR D P+SLFEGM G I+FL+D+L
Sbjct: 339 TQDAKYLYRACKFAEWCLDYGEHGCRTPDTPFSLFEGMAGTIYFLADLL 387
>ref|XP_002700274.1| PREDICTED: LanC lantibiotic synthetase component C-like 3 (bacterial)
[Bos taurus].
Length = 420
Score = 153 bits (386), Expect(2) = 2e-43
Identities = 90/239 (37%), Positives = 131/239 (54%), Gaps = 7/239 (2%)
Frame = +3
Query: 705 RVTFLCGDAGPLAVGAVVYHKLKSDGESQECITKLLQLQRTIVCRDSDL----PDELLFG 872
R FL G AG AV +VYH L Q + K L VC DEL G
Sbjct: 117 RAAFLLGGAGVYAVATLVYHALGRPDYVQP-LGKFRAL--CAVCAPVSFLECGSDELFVG 173
Query: 873 RAGYLYALLYVNTEMGPGAVCESAIKEVVDAIIDSGKTLSKEERKAERCPLLYQWHRKQY 1052
RAGYL A L + ++ + + IK + AI+DSGK + ++RK PL+Y ++ +Y
Sbjct: 174 RAGYLCAALVLKQKLAQEVLTPAQIKSICQAILDSGKQYAMKKRKP--FPLMYSYYGTEY 231
Query: 1053 VGAAHGMAGIYYMLMQPAAKVDQETLTEMVKPSIDYMRHKRFRSGNYPSSLSNETDR--- 1223
+GAAHG++ I ML+ + E+V S+D++ + ++ N+P L +R
Sbjct: 232 LGAAHGLSSILQMLLSYHEHLKPSD-QELVWQSVDFLMEQE-QNCNWPPELGEAIERENE 289
Query: 1224 LVHWCHGAPGVIHTLMQAYKVFKEEKYLTDAVECSDVIWQRGLLRKGYGICHGTAGNGY 1400
LVHWCHGAPG+ + +AY V K+ +YL + C ++ WQ+GLL+KG GICHG AG+ Y
Sbjct: 290 LVHWCHGAPGIAYLFAKAYLVSKKPQYLDTCIRCGELTWQKGLLKKGPGICHGVAGSAY 348
Score = 42.4 bits (98), Expect(2) = 2e-43
Identities = 22/50 (44%), Positives = 31/50 (62%), Gaps = 1/50 (2%)
Frame = +2
Query: 1424 TQDKKYLYRALQFAEWCL-EYXAHGCRISDRPYSLFEGMGGRIHFLSDIL 1570
T + KY+YRA +FAE+ E G R+ + YSL+EG G + FL D+L
Sbjct: 357 TGNSKYIYRAQRFAEFLFTEEFKAGSRVLESIYSLYEGFSGTVCFLIDLL 406
>ref|XP_002706107.1| PREDICTED: LanC lantibiotic synthetase component C-like 3
(bacterial), partial [Bos taurus].
Length = 306
Score = 125 bits (313), Expect(2) = 6e-35
Identities = 62/155 (40%), Positives = 96/155 (61%), Gaps = 3/155 (1%)
Frame = +3
Query: 945 IKEVVDAIIDSGKTLSKEERKAERCPLLYQWHRKQYVGAAHGMAGIYYMLMQPAAKVDQE 1124
IK + AI+DSGK + ++RK PL+Y ++ +Y+GAAHG++ I ML+ +
Sbjct: 84 IKSICQAILDSGKQYAMKKRKP--FPLMYSYYGTEYLGAAHGLSSILQMLLSYHEHLKPS 141
Query: 1125 TLTEMVKPSIDYMRHKRFRSGNYPSSLSNETDR---LVHWCHGAPGVIHTLMQAYKVFKE 1295
E+V S+D++ + ++ N+P L +R LVHWCHGAPG+ + +AY V K+
Sbjct: 142 D-QELVWQSVDFLMEQE-QNCNWPPELGEAIERENELVHWCHGAPGIAYLFAKAYLVSKK 199
Query: 1296 EKYLTDAVECSDVIWQRGLLRKGYGICHGTAGNGY 1400
+YL + C ++ WQ+GLL+KG GICHG AG+ Y
Sbjct: 200 PQYLDTCIRCGELTWQKGLLKKGPGICHGVAGSAY 234
Score = 42.4 bits (98), Expect(2) = 6e-35
Identities = 22/50 (44%), Positives = 31/50 (62%), Gaps = 1/50 (2%)
Frame = +2
Query: 1424 TQDKKYLYRALQFAEWCL-EYXAHGCRISDRPYSLFEGMGGRIHFLSDIL 1570
T + KY+YRA +FAE+ E G R+ + YSL+EG G + FL D+L
Sbjct: 243 TGNSKYIYRAQRFAEFLFTEEFKAGSRVLESIYSLYEGFSGTVCFLIDLL 292
Database: RefSeq44_BP.fasta
Posted date: Nov 15, 2010 4:36 PM
Number of letters in database: 18,071,151
Number of sequences in database: 33,615
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33615
Number of Hits to DB: 62,822,218
Number of extensions: 1802017
Number of successful extensions: 11137
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 11009
Number of HSP's successfully gapped: 8
Length of query: 524
Length of database: 18,071,151
Length adjustment: 107
Effective length of query: 417
Effective length of database: 14,474,346
Effective search space: 6035802282
Effective search space used: 6035802282
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqCP_Rel44
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20070806C-001536
(1574 letters)
Database: RefSeq44_CP.fasta
33,359 sequences; 18,921,627 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_540359.2| PREDICTED: similar to LanC-like protein 2 (Test... 604 0.0
Alignment gi|XP_536055.1| PREDICTED: similar to LanC-like protein 1 (40 k... 367 e-119
Alignment gi|XP_548943.2| PREDICTED: similar to LanC lantibiotic syntheta... 153 2e-43
>ref|XP_540359.2| PREDICTED: similar to LanC-like protein 2 (Testis-specific adriamycin
sensitivity protein) [Canis familiaris].
Length = 452
Score = 604 bits (1558), Expect(2) = 0.0
Identities = 290/308 (94%), Positives = 301/308 (97%)
Frame = +3
Query: 477 KIIHNFTRRIQSKIKDLLQQMEEGLKTADPHDCSAYTGWTGIALLYLQLYRVTCDQNYLL 656
+I+ NFT+RIQ+KIKDLLQQMEEGLKTADPHDCSAYTGWTGIALLYLQLYRVTCDQ YLL
Sbjct: 67 RIVQNFTKRIQTKIKDLLQQMEEGLKTADPHDCSAYTGWTGIALLYLQLYRVTCDQTYLL 126
Query: 657 RSLDYVKRTLRNLNGRRVTFLCGDAGPLAVGAVVYHKLKSDGESQECITKLLQLQRTIVC 836
RSLDYVKRTLRNLNGRRVTFLCGDAGPLAVGAVVYHKLKSD ESQECITKLLQLQRTIVC
Sbjct: 127 RSLDYVKRTLRNLNGRRVTFLCGDAGPLAVGAVVYHKLKSDCESQECITKLLQLQRTIVC 186
Query: 837 RDSDLPDELLFGRAGYLYALLYVNTEMGPGAVCESAIKEVVDAIIDSGKTLSKEERKAER 1016
RDSDLPDELL+GRAGYLYALLY+NTE+GPG VCESAIKEVV AII+SGKTLS+EERKAER
Sbjct: 187 RDSDLPDELLYGRAGYLYALLYLNTEIGPGTVCESAIKEVVCAIIESGKTLSREERKAER 246
Query: 1017 CPLLYQWHRKQYVGAAHGMAGIYYMLMQPAAKVDQETLTEMVKPSIDYMRHKRFRSGNYP 1196
CPLLYQWHRKQYVGAAHGMAGIYYMLMQPAAKVDQETLTEMVKPSIDY+RHKRFRSGNYP
Sbjct: 247 CPLLYQWHRKQYVGAAHGMAGIYYMLMQPAAKVDQETLTEMVKPSIDYVRHKRFRSGNYP 306
Query: 1197 SSLSNETDRLVHWCHGAPGVIHTLMQAYKVFKEEKYLTDAVECSDVIWQRGLLRKGYGIC 1376
SSLSNETDRLVHWCHGAPGVIH LMQAYKVFKEEKYL DA+ECSDVIWQRGLLRKGYGIC
Sbjct: 307 SSLSNETDRLVHWCHGAPGVIHMLMQAYKVFKEEKYLKDAMECSDVIWQRGLLRKGYGIC 366
Query: 1377 HGTAGNGY 1400
HGTAGNGY
Sbjct: 367 HGTAGNGY 374
Score = 97.8 bits (242), Expect(2) = 0.0
Identities = 44/50 (88%), Positives = 45/50 (90%)
Frame = +2
Query: 1424 TQDKKYLYRALQFAEWCLEYXAHGCRISDRPYSLFEGMGGRIHFLSDILA 1573
TQDKKYLYRA +FAEWCLEY AHGCRI DRPYSLFEGM G IHFLSDILA
Sbjct: 383 TQDKKYLYRACKFAEWCLEYGAHGCRIPDRPYSLFEGMAGAIHFLSDILA 432
>ref|XP_536055.1| PREDICTED: similar to LanC-like protein 1 (40 kDa erythrocyte
membrane protein) (p40) [Canis familiaris].
Length = 399
Score = 367 bits (941), Expect(2) = e-119
Identities = 172/352 (48%), Positives = 242/352 (68%)
Frame = +3
Query: 345 MEERAFPNPFPDYXXXXXXXXXXXXXXXXXLTPEELGLPFHSDGKIIHNFTRRIQSKIKD 524
M +RAFPNP+ D+ F G++ F++R+ +KI++
Sbjct: 1 MAQRAFPNPYADFNKSLAESY------------------FDCAGRLTPEFSQRLNNKIRE 42
Query: 525 LLQQMEEGLKTADPHDCSAYTGWTGIALLYLQLYRVTCDQNYLLRSLDYVKRTLRNLNGR 704
LLQQME GLK+ADP D + YTGW GIALLYL LY V D YL + YVK++L +L R
Sbjct: 43 LLQQMERGLKSADPRDSTVYTGWAGIALLYLHLYDVFGDPAYLQMAHGYVKQSLNSLTKR 102
Query: 705 RVTFLCGDAGPLAVGAVVYHKLKSDGESQECITKLLQLQRTIVCRDSDLPDELLFGRAGY 884
+TFLCGDAGPLA+GAVVYHK+ ++ ++++CIT+L+ L + D P+E+L+GR GY
Sbjct: 103 SITFLCGDAGPLAIGAVVYHKMNNEKQAEDCITRLIHLNKI----DHHAPNEMLYGRMGY 158
Query: 885 LYALLYVNTEMGPGAVCESAIKEVVDAIIDSGKTLSKEERKAERCPLLYQWHRKQYVGAA 1064
+YALL+VN G + +S I+++ +A++ SG+ L+++ + PL+Y+W+++ YVGAA
Sbjct: 159 VYALLFVNKNFGVEKIPQSHIQQICEAVLTSGENLAQKRNFTAKTPLMYEWYQEYYVGAA 218
Query: 1065 HGMAGIYYMLMQPAAKVDQETLTEMVKPSIDYMRHKRFRSGNYPSSLSNETDRLVHWCHG 1244
HG+AGIYY+LMQP+ +V L +VKPS+DY+ +F SGNYP + + D LVHWCHG
Sbjct: 219 HGLAGIYYLLMQPSLQVSHVKLHNLVKPSVDYVCQLKFPSGNYPPCVDDNRDLLVHWCHG 278
Query: 1245 APGVIHTLMQAYKVFKEEKYLTDAVECSDVIWQRGLLRKGYGICHGTAGNGY 1400
+PGVI+ L+QAYK F+ E YL DA +C+DVIW+ GLLRKGYG+CHGTAGN Y
Sbjct: 279 SPGVIYMLIQAYKAFRGEHYLNDAHQCADVIWRYGLLRKGYGLCHGTAGNAY 330
Score = 80.9 bits (198), Expect(2) = e-119
Identities = 34/49 (69%), Positives = 40/49 (81%)
Frame = +2
Query: 1424 TQDKKYLYRALQFAEWCLEYXAHGCRISDRPYSLFEGMGGRIHFLSDIL 1570
TQD KYLYRA +FAEWCL+Y HGCR D P+SLFEGM G I+FL+D+L
Sbjct: 339 TQDMKYLYRACKFAEWCLDYGEHGCRTPDTPFSLFEGMAGTIYFLADLL 387
>ref|XP_548943.2| PREDICTED: similar to LanC lantibiotic synthetase component C-like 3
[Canis familiaris].
Length = 420
Score = 153 bits (387), Expect(2) = 2e-43
Identities = 90/239 (37%), Positives = 131/239 (54%), Gaps = 7/239 (2%)
Frame = +3
Query: 705 RVTFLCGDAGPLAVGAVVYHKLKSDGESQECITKLLQLQRTIVCRDSDL----PDELLFG 872
R FL G AG AV +VYH L Q + K L VC DEL G
Sbjct: 117 RAAFLLGGAGVYAVATLVYHALGRSDYVQP-LGKFRAL--CAVCAPVSFLECGSDELFVG 173
Query: 873 RAGYLYALLYVNTEMGPGAVCESAIKEVVDAIIDSGKTLSKEERKAERCPLLYQWHRKQY 1052
RAGYL A L + ++ + + IK + AI+DSGK + ++RK PL+Y ++ +Y
Sbjct: 174 RAGYLCAALVLKQKLAQEVLTPAQIKSICQAILDSGKQYAMKKRKP--FPLMYSYYGTEY 231
Query: 1053 VGAAHGMAGIYYMLMQPAAKVDQETLTEMVKPSIDYMRHKRFRSGNYPSSLSNETDR--- 1223
+GAAHG++ I ML+ + E+V S+D++ + ++ N+P L +R
Sbjct: 232 LGAAHGLSSILQMLLSYHEHLKPSD-QELVWQSVDFLMEQE-QNCNWPPELGEAIERENE 289
Query: 1224 LVHWCHGAPGVIHTLMQAYKVFKEEKYLTDAVECSDVIWQRGLLRKGYGICHGTAGNGY 1400
LVHWCHGAPG+ + +AY V K+ +YL + C ++ WQ+GLL+KG GICHG AG+ Y
Sbjct: 290 LVHWCHGAPGIAYLFAKAYLVSKKPQYLDTCIRCGELTWQKGLLKKGPGICHGVAGSAY 348
Score = 42.4 bits (98), Expect(2) = 2e-43
Identities = 22/50 (44%), Positives = 31/50 (62%), Gaps = 1/50 (2%)
Frame = +2
Query: 1424 TQDKKYLYRALQFAEWCL-EYXAHGCRISDRPYSLFEGMGGRIHFLSDIL 1570
T + KY+YRA +FAE+ E G R+ + YSL+EG G + FL D+L
Sbjct: 357 TGNSKYIYRAQRFAEFLFTEEFKAGSRVLESIYSLYEGFSGTVCFLIDLL 406
Database: RefSeq44_CP.fasta
Posted date: Nov 15, 2010 4:36 PM
Number of letters in database: 18,921,627
Number of sequences in database: 33,359
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33359
Number of Hits to DB: 64,246,795
Number of extensions: 1820880
Number of successful extensions: 11625
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 11484
Number of HSP's successfully gapped: 6
Length of query: 524
Length of database: 18,921,627
Length adjustment: 107
Effective length of query: 417
Effective length of database: 15,352,214
Effective search space: 6401873238
Effective search space used: 6401873238
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqHP_Rel44
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20070806C-001536
(1574 letters)
Database: RefSeq44_HP.fasta
33,950 sequences; 18,324,212 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_061167.1| lanC-like protein 2 [Homo sapiens]. 645 0.0
Alignment gi|NP_006046.1| lanC-like protein 1 [Homo sapiens]. 369 e-120
Alignment gi|NP_001130047.1| lanC-like protein 1 [Homo sapiens]. 369 e-120
Alignment gi|NP_001130046.1| lanC-like protein 1 [Homo sapiens]. 369 e-120
Alignment gi|NP_001163802.1| lanC-like protein 3 isoform 2 [Homo sapiens]. 152 7e-43
Alignment gi|NP_940913.1| lanC-like protein 3 isoform 1 [Homo sapiens]. 152 6e-37
>ref|NP_061167.1| lanC-like protein 2 [Homo sapiens].
Length = 450
Score = 645 bits (1664), Expect(2) = 0.0
Identities = 313/375 (83%), Positives = 335/375 (89%), Gaps = 5/375 (1%)
Frame = +3
Query: 291 MGETISRRLWFQGDWDAEMEERAFPNPFPDYXXXXXXXXXXXXXXXXXL-----TPEELG 455
MGET+S+RL +AEMEERAF NPFPDY T +E G
Sbjct: 1 MGETMSKRLKLHLGGEAEMEERAFVNPFPDYEAAAGALLASGAAEETGCVRPPATTDEPG 60
Query: 456 LPFHSDGKIIHNFTRRIQSKIKDLLQQMEEGLKTADPHDCSAYTGWTGIALLYLQLYRVT 635
LPFH DGKIIHNF RRIQ+KIKDLLQQMEEGLKTADPHDCSAYTGWTGIALLYLQLYRVT
Sbjct: 61 LPFHQDGKIIHNFIRRIQTKIKDLLQQMEEGLKTADPHDCSAYTGWTGIALLYLQLYRVT 120
Query: 636 CDQNYLLRSLDYVKRTLRNLNGRRVTFLCGDAGPLAVGAVVYHKLKSDGESQECITKLLQ 815
CDQ YLLRSLDYVKRTLRNLNGRRVTFLCGDAGPLAVGAV+YHKL+SD ESQEC+TKLLQ
Sbjct: 121 CDQTYLLRSLDYVKRTLRNLNGRRVTFLCGDAGPLAVGAVIYHKLRSDCESQECVTKLLQ 180
Query: 816 LQRTIVCRDSDLPDELLFGRAGYLYALLYVNTEMGPGAVCESAIKEVVDAIIDSGKTLSK 995
LQR++VC++SDLPDELL+GRAGYLYALLY+NTE+GPG VCESAIKEVV+AII+SGKTLS+
Sbjct: 181 LQRSVVCQESDLPDELLYGRAGYLYALLYLNTEIGPGTVCESAIKEVVNAIIESGKTLSR 240
Query: 996 EERKAERCPLLYQWHRKQYVGAAHGMAGIYYMLMQPAAKVDQETLTEMVKPSIDYMRHKR 1175
EERK ERCPLLYQWHRKQYVGAAHGMAGIYYMLMQPAAKVDQETLTEMVKPSIDY+RHK+
Sbjct: 241 EERKTERCPLLYQWHRKQYVGAAHGMAGIYYMLMQPAAKVDQETLTEMVKPSIDYVRHKK 300
Query: 1176 FRSGNYPSSLSNETDRLVHWCHGAPGVIHTLMQAYKVFKEEKYLTDAVECSDVIWQRGLL 1355
FRSGNYPSSLSNETDRLVHWCHGAPGVIH LMQAYKVFKEEKYL +A+ECSDVIWQRGLL
Sbjct: 301 FRSGNYPSSLSNETDRLVHWCHGAPGVIHMLMQAYKVFKEEKYLKEAMECSDVIWQRGLL 360
Query: 1356 RKGYGICHGTAGNGY 1400
RKGYGICHGTAGNGY
Sbjct: 361 RKGYGICHGTAGNGY 375
Score = 94.7 bits (234), Expect(2) = 0.0
Identities = 41/49 (83%), Positives = 44/49 (89%)
Frame = +2
Query: 1424 TQDKKYLYRALQFAEWCLEYXAHGCRISDRPYSLFEGMGGRIHFLSDIL 1570
TQDKKYLYRA +FAEWCL+Y AHGCRI DRPYSLFEGM G IHFLSD+L
Sbjct: 384 TQDKKYLYRACKFAEWCLDYGAHGCRIPDRPYSLFEGMAGAIHFLSDVL 432
>ref|NP_006046.1| lanC-like protein 1 [Homo sapiens].
Length = 399
Score = 369 bits (948), Expect(2) = e-120
Identities = 175/352 (49%), Positives = 243/352 (69%)
Frame = +3
Query: 345 MEERAFPNPFPDYXXXXXXXXXXXXXXXXXLTPEELGLPFHSDGKIIHNFTRRIQSKIKD 524
M +RAFPNP+ DY F + G++ F++R+ +KI++
Sbjct: 1 MAQRAFPNPYADYNKSLAEGY------------------FDAAGRLTPEFSQRLTNKIRE 42
Query: 525 LLQQMEEGLKTADPHDCSAYTGWTGIALLYLQLYRVTCDQNYLLRSLDYVKRTLRNLNGR 704
LLQQME GLK+ADP D + YTGW GIA+LYL LY V D YL + YVK++L L R
Sbjct: 43 LLQQMERGLKSADPRDGTGYTGWAGIAVLYLHLYDVFGDPAYLQLAHGYVKQSLNCLTKR 102
Query: 705 RVTFLCGDAGPLAVGAVVYHKLKSDGESQECITKLLQLQRTIVCRDSDLPDELLFGRAGY 884
+TFLCGDAGPLAV AV+YHK+ ++ ++++CIT+L+ L + D P+E+L+GR GY
Sbjct: 103 SITFLCGDAGPLAVAAVLYHKMNNEKQAEDCITRLIHLNKI----DPHAPNEMLYGRIGY 158
Query: 885 LYALLYVNTEMGPGAVCESAIKEVVDAIIDSGKTLSKEERKAERCPLLYQWHRKQYVGAA 1064
+YALL+VN G + +S I+++ + I+ SG+ L+++ + PL+Y+W+++ YVGAA
Sbjct: 159 IYALLFVNKNFGVEKIPQSHIQQICETILTSGENLARKRNFTAKSPLMYEWYQEYYVGAA 218
Query: 1065 HGMAGIYYMLMQPAAKVDQETLTEMVKPSIDYMRHKRFRSGNYPSSLSNETDRLVHWCHG 1244
HG+AGIYY LMQP+ +V Q L +VKPS+DY+ +F SGNYP + + D LVHWCHG
Sbjct: 219 HGLAGIYYYLMQPSLQVSQGKLHSLVKPSVDYVCQLKFPSGNYPPCIGDNRDLLVHWCHG 278
Query: 1245 APGVIHTLMQAYKVFKEEKYLTDAVECSDVIWQRGLLRKGYGICHGTAGNGY 1400
APGVI+ L+QAYKVF+EEKYL DA +C+DVIWQ GLL+KGYG+CHG+AGN Y
Sbjct: 279 APGVIYMLIQAYKVFREEKYLCDAYQCADVIWQYGLLKKGYGLCHGSAGNAY 330
Score = 82.0 bits (201), Expect(2) = e-120
Identities = 35/49 (71%), Positives = 40/49 (81%)
Frame = +2
Query: 1424 TQDKKYLYRALQFAEWCLEYXAHGCRISDRPYSLFEGMGGRIHFLSDIL 1570
TQD KYLYRA +FAEWCLEY HGCR D P+SLFEGM G I+FL+D+L
Sbjct: 339 TQDMKYLYRACKFAEWCLEYGEHGCRTPDTPFSLFEGMAGTIYFLADLL 387
>ref|NP_001130047.1| lanC-like protein 1 [Homo sapiens].
Length = 399
Score = 369 bits (948), Expect(2) = e-120
Identities = 175/352 (49%), Positives = 243/352 (69%)
Frame = +3
Query: 345 MEERAFPNPFPDYXXXXXXXXXXXXXXXXXLTPEELGLPFHSDGKIIHNFTRRIQSKIKD 524
M +RAFPNP+ DY F + G++ F++R+ +KI++
Sbjct: 1 MAQRAFPNPYADYNKSLAEGY------------------FDAAGRLTPEFSQRLTNKIRE 42
Query: 525 LLQQMEEGLKTADPHDCSAYTGWTGIALLYLQLYRVTCDQNYLLRSLDYVKRTLRNLNGR 704
LLQQME GLK+ADP D + YTGW GIA+LYL LY V D YL + YVK++L L R
Sbjct: 43 LLQQMERGLKSADPRDGTGYTGWAGIAVLYLHLYDVFGDPAYLQLAHGYVKQSLNCLTKR 102
Query: 705 RVTFLCGDAGPLAVGAVVYHKLKSDGESQECITKLLQLQRTIVCRDSDLPDELLFGRAGY 884
+TFLCGDAGPLAV AV+YHK+ ++ ++++CIT+L+ L + D P+E+L+GR GY
Sbjct: 103 SITFLCGDAGPLAVAAVLYHKMNNEKQAEDCITRLIHLNKI----DPHAPNEMLYGRIGY 158
Query: 885 LYALLYVNTEMGPGAVCESAIKEVVDAIIDSGKTLSKEERKAERCPLLYQWHRKQYVGAA 1064
+YALL+VN G + +S I+++ + I+ SG+ L+++ + PL+Y+W+++ YVGAA
Sbjct: 159 IYALLFVNKNFGVEKIPQSHIQQICETILTSGENLARKRNFTAKSPLMYEWYQEYYVGAA 218
Query: 1065 HGMAGIYYMLMQPAAKVDQETLTEMVKPSIDYMRHKRFRSGNYPSSLSNETDRLVHWCHG 1244
HG+AGIYY LMQP+ +V Q L +VKPS+DY+ +F SGNYP + + D LVHWCHG
Sbjct: 219 HGLAGIYYYLMQPSLQVSQGKLHSLVKPSVDYVCQLKFPSGNYPPCIGDNRDLLVHWCHG 278
Query: 1245 APGVIHTLMQAYKVFKEEKYLTDAVECSDVIWQRGLLRKGYGICHGTAGNGY 1400
APGVI+ L+QAYKVF+EEKYL DA +C+DVIWQ GLL+KGYG+CHG+AGN Y
Sbjct: 279 APGVIYMLIQAYKVFREEKYLCDAYQCADVIWQYGLLKKGYGLCHGSAGNAY 330
Score = 82.0 bits (201), Expect(2) = e-120
Identities = 35/49 (71%), Positives = 40/49 (81%)
Frame = +2
Query: 1424 TQDKKYLYRALQFAEWCLEYXAHGCRISDRPYSLFEGMGGRIHFLSDIL 1570
TQD KYLYRA +FAEWCLEY HGCR D P+SLFEGM G I+FL+D+L
Sbjct: 339 TQDMKYLYRACKFAEWCLEYGEHGCRTPDTPFSLFEGMAGTIYFLADLL 387
>ref|NP_001130046.1| lanC-like protein 1 [Homo sapiens].
Length = 399
Score = 369 bits (948), Expect(2) = e-120
Identities = 175/352 (49%), Positives = 243/352 (69%)
Frame = +3
Query: 345 MEERAFPNPFPDYXXXXXXXXXXXXXXXXXLTPEELGLPFHSDGKIIHNFTRRIQSKIKD 524
M +RAFPNP+ DY F + G++ F++R+ +KI++
Sbjct: 1 MAQRAFPNPYADYNKSLAEGY------------------FDAAGRLTPEFSQRLTNKIRE 42
Query: 525 LLQQMEEGLKTADPHDCSAYTGWTGIALLYLQLYRVTCDQNYLLRSLDYVKRTLRNLNGR 704
LLQQME GLK+ADP D + YTGW GIA+LYL LY V D YL + YVK++L L R
Sbjct: 43 LLQQMERGLKSADPRDGTGYTGWAGIAVLYLHLYDVFGDPAYLQLAHGYVKQSLNCLTKR 102
Query: 705 RVTFLCGDAGPLAVGAVVYHKLKSDGESQECITKLLQLQRTIVCRDSDLPDELLFGRAGY 884
+TFLCGDAGPLAV AV+YHK+ ++ ++++CIT+L+ L + D P+E+L+GR GY
Sbjct: 103 SITFLCGDAGPLAVAAVLYHKMNNEKQAEDCITRLIHLNKI----DPHAPNEMLYGRIGY 158
Query: 885 LYALLYVNTEMGPGAVCESAIKEVVDAIIDSGKTLSKEERKAERCPLLYQWHRKQYVGAA 1064
+YALL+VN G + +S I+++ + I+ SG+ L+++ + PL+Y+W+++ YVGAA
Sbjct: 159 IYALLFVNKNFGVEKIPQSHIQQICETILTSGENLARKRNFTAKSPLMYEWYQEYYVGAA 218
Query: 1065 HGMAGIYYMLMQPAAKVDQETLTEMVKPSIDYMRHKRFRSGNYPSSLSNETDRLVHWCHG 1244
HG+AGIYY LMQP+ +V Q L +VKPS+DY+ +F SGNYP + + D LVHWCHG
Sbjct: 219 HGLAGIYYYLMQPSLQVSQGKLHSLVKPSVDYVCQLKFPSGNYPPCIGDNRDLLVHWCHG 278
Query: 1245 APGVIHTLMQAYKVFKEEKYLTDAVECSDVIWQRGLLRKGYGICHGTAGNGY 1400
APGVI+ L+QAYKVF+EEKYL DA +C+DVIWQ GLL+KGYG+CHG+AGN Y
Sbjct: 279 APGVIYMLIQAYKVFREEKYLCDAYQCADVIWQYGLLKKGYGLCHGSAGNAY 330
Score = 82.0 bits (201), Expect(2) = e-120
Identities = 35/49 (71%), Positives = 40/49 (81%)
Frame = +2
Query: 1424 TQDKKYLYRALQFAEWCLEYXAHGCRISDRPYSLFEGMGGRIHFLSDIL 1570
TQD KYLYRA +FAEWCLEY HGCR D P+SLFEGM G I+FL+D+L
Sbjct: 339 TQDMKYLYRACKFAEWCLEYGEHGCRTPDTPFSLFEGMAGTIYFLADLL 387
>ref|NP_001163802.1| lanC-like protein 3 isoform 2 [Homo sapiens].
Length = 420
Score = 152 bits (385), Expect(2) = 7e-43
Identities = 90/239 (37%), Positives = 131/239 (54%), Gaps = 7/239 (2%)
Frame = +3
Query: 705 RVTFLCGDAGPLAVGAVVYHKLKSDGESQECITKLLQLQRTIVCRDSDL----PDELLFG 872
R FL G AG AV +VYH L Q + K L VC DEL G
Sbjct: 117 RAAFLLGGAGVYAVATLVYHALGRSDYVQP-LGKFRAL--CAVCAPVSFLECGSDELFVG 173
Query: 873 RAGYLYALLYVNTEMGPGAVCESAIKEVVDAIIDSGKTLSKEERKAERCPLLYQWHRKQY 1052
RAGYL A L + ++ + + IK + AI+DSGK + ++RK PL+Y ++ +Y
Sbjct: 174 RAGYLCAALVLKQKLAQEVLTPAQIKSICQAILDSGKQYAIKKRKP--FPLMYSYYGTEY 231
Query: 1053 VGAAHGMAGIYYMLMQPAAKVDQETLTEMVKPSIDYMRHKRFRSGNYPSSLSNETDR--- 1223
+GAAHG++ I ML+ + E+V S+D++ + ++ N+P L +R
Sbjct: 232 LGAAHGLSSILQMLLSYHEHLKPSD-RELVWQSVDFLMEQE-QNCNWPPELGETIERENE 289
Query: 1224 LVHWCHGAPGVIHTLMQAYKVFKEEKYLTDAVECSDVIWQRGLLRKGYGICHGTAGNGY 1400
LVHWCHGAPG+ + +AY V K+ +YL + C ++ WQ+GLL+KG GICHG AG+ Y
Sbjct: 290 LVHWCHGAPGIAYLFAKAYLVSKKPQYLDTCIRCGELTWQKGLLKKGPGICHGVAGSAY 348
Score = 41.2 bits (95), Expect(2) = 7e-43
Identities = 21/50 (42%), Positives = 31/50 (62%), Gaps = 1/50 (2%)
Frame = +2
Query: 1424 TQDKKYLYRALQFAEWCL-EYXAHGCRISDRPYSLFEGMGGRIHFLSDIL 1570
T + KY+YRA +FA++ E G R+ + YSL+EG G + FL D+L
Sbjct: 357 TGNSKYIYRAQRFAQFLFTEEFKAGSRVLESIYSLYEGFSGTVCFLIDLL 406
>ref|NP_940913.1| lanC-like protein 3 isoform 1 [Homo sapiens].
Length = 388
Score = 152 bits (385), Expect = 6e-37
Identities = 90/239 (37%), Positives = 131/239 (54%), Gaps = 7/239 (2%)
Frame = +3
Query: 705 RVTFLCGDAGPLAVGAVVYHKLKSDGESQECITKLLQLQRTIVCRDSDL----PDELLFG 872
R FL G AG AV +VYH L Q + K L VC DEL G
Sbjct: 117 RAAFLLGGAGVYAVATLVYHALGRSDYVQP-LGKFRAL--CAVCAPVSFLECGSDELFVG 173
Query: 873 RAGYLYALLYVNTEMGPGAVCESAIKEVVDAIIDSGKTLSKEERKAERCPLLYQWHRKQY 1052
RAGYL A L + ++ + + IK + AI+DSGK + ++RK PL+Y ++ +Y
Sbjct: 174 RAGYLCAALVLKQKLAQEVLTPAQIKSICQAILDSGKQYAIKKRKP--FPLMYSYYGTEY 231
Query: 1053 VGAAHGMAGIYYMLMQPAAKVDQETLTEMVKPSIDYMRHKRFRSGNYPSSLSNETDR--- 1223
+GAAHG++ I ML+ + E+V S+D++ + ++ N+P L +R
Sbjct: 232 LGAAHGLSSILQMLLSYHEHLKPSD-RELVWQSVDFLMEQE-QNCNWPPELGETIERENE 289
Query: 1224 LVHWCHGAPGVIHTLMQAYKVFKEEKYLTDAVECSDVIWQRGLLRKGYGICHGTAGNGY 1400
LVHWCHGAPG+ + +AY V K+ +YL + C ++ WQ+GLL+KG GICHG AG+ Y
Sbjct: 290 LVHWCHGAPGIAYLFAKAYLVSKKPQYLDTCIRCGELTWQKGLLKKGPGICHGVAGSAY 348
Database: RefSeq44_HP.fasta
Posted date: Nov 15, 2010 4:36 PM
Number of letters in database: 18,324,212
Number of sequences in database: 33,950
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33950
Number of Hits to DB: 63,049,068
Number of extensions: 1778473
Number of successful extensions: 9650
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 9551
Number of HSP's successfully gapped: 11
Length of query: 524
Length of database: 18,324,212
Length adjustment: 107
Effective length of query: 417
Effective length of database: 14,691,562
Effective search space: 6126381354
Effective search space used: 6126381354
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqMP_Rel44
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20070806C-001536
(1574 letters)
Database: RefSeq44_MP.fasta
29,866 sequences; 15,452,059 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_598498.1| lanC-like protein 2 [Mus musculus]. 615 0.0
Alignment gi|NP_001177913.1| lanC-like protein 1 [Mus musculus]. 373 e-121
Alignment gi|NP_067270.1| lanC-like protein 1 [Mus musculus]. 373 e-121
Alignment gi|NP_001177914.1| lanC-like protein 1 [Mus musculus]. 373 e-121
Alignment gi|NP_775590.2| lanC-like protein 3 [Mus musculus]. 152 6e-43
>ref|NP_598498.1| lanC-like protein 2 [Mus musculus].
Length = 450
Score = 615 bits (1587), Expect(2) = 0.0
Identities = 301/376 (80%), Positives = 332/376 (88%), Gaps = 6/376 (1%)
Frame = +3
Query: 291 MGETISRRLWFQGDWDAEMEERAFPNPFPDYXXXXXXXXXXXXXXXXX------LTPEEL 452
MGET+S+RL F +AEMEER+FPNPFPDY T E+
Sbjct: 1 MGETMSKRLKFHLG-EAEMEERSFPNPFPDYEAAASAAGLAAGSAEETGRVCPLPTTEDP 59
Query: 453 GLPFHSDGKIIHNFTRRIQSKIKDLLQQMEEGLKTADPHDCSAYTGWTGIALLYLQLYRV 632
GLPFH +GKI+ NF +RIQ+KIKDLLQQMEEGLKTADPHDCSAYTGWTGIALLYLQLYRV
Sbjct: 60 GLPFHPNGKIVPNFIKRIQTKIKDLLQQMEEGLKTADPHDCSAYTGWTGIALLYLQLYRV 119
Query: 633 TCDQNYLLRSLDYVKRTLRNLNGRRVTFLCGDAGPLAVGAVVYHKLKSDGESQECITKLL 812
T DQ YLLRSLDYVKRTLRNL+GRRVTFLCGDAGPLAVGAV+YHKLKS+ ESQECITKLL
Sbjct: 120 TGDQTYLLRSLDYVKRTLRNLSGRRVTFLCGDAGPLAVGAVIYHKLKSECESQECITKLL 179
Query: 813 QLQRTIVCRDSDLPDELLFGRAGYLYALLYVNTEMGPGAVCESAIKEVVDAIIDSGKTLS 992
Q+ RTIVC++S+LPDELL+GRAGYLYALLY+NTE+GPG V E+AIKEVV AII+SGK+LS
Sbjct: 180 QMHRTIVCQESELPDELLYGRAGYLYALLYLNTEIGPGTVGETAIKEVVSAIIESGKSLS 239
Query: 993 KEERKAERCPLLYQWHRKQYVGAAHGMAGIYYMLMQPAAKVDQETLTEMVKPSIDYMRHK 1172
+EERK+ERCPLLYQWHRKQYVGAAHGMAGIYYMLMQP AKVDQETLTEMVKPSIDY+RHK
Sbjct: 240 REERKSERCPLLYQWHRKQYVGAAHGMAGIYYMLMQPEAKVDQETLTEMVKPSIDYVRHK 299
Query: 1173 RFRSGNYPSSLSNETDRLVHWCHGAPGVIHTLMQAYKVFKEEKYLTDAVECSDVIWQRGL 1352
+FRSGNYPSSLSNETDRLVHWCHGAPGVIH L+QAY+VFKEEKYL +A+ECSDVIWQRGL
Sbjct: 300 KFRSGNYPSSLSNETDRLVHWCHGAPGVIHVLLQAYQVFKEEKYLKEAMECSDVIWQRGL 359
Query: 1353 LRKGYGICHGTAGNGY 1400
LRKGYGICHGT+GNGY
Sbjct: 360 LRKGYGICHGTSGNGY 375
Score = 94.7 bits (234), Expect(2) = 0.0
Identities = 41/49 (83%), Positives = 44/49 (89%)
Frame = +2
Query: 1424 TQDKKYLYRALQFAEWCLEYXAHGCRISDRPYSLFEGMGGRIHFLSDIL 1570
TQDKKYLYRA +FAEWCL+Y AHGCRI DRPYSLFEGM G +HFLSDIL
Sbjct: 384 TQDKKYLYRACKFAEWCLDYGAHGCRIPDRPYSLFEGMAGAVHFLSDIL 432
>ref|NP_001177913.1| lanC-like protein 1 [Mus musculus].
Length = 399
Score = 373 bits (958), Expect(2) = e-121
Identities = 178/352 (50%), Positives = 245/352 (69%)
Frame = +3
Query: 345 MEERAFPNPFPDYXXXXXXXXXXXXXXXXXLTPEELGLPFHSDGKIIHNFTRRIQSKIKD 524
M +RAFPNP+ DY F S G++ F+ R+ +KI++
Sbjct: 1 MAQRAFPNPYADYNKSLAENY------------------FDSTGRLTPEFSHRLTNKIRE 42
Query: 525 LLQQMEEGLKTADPHDCSAYTGWTGIALLYLQLYRVTCDQNYLLRSLDYVKRTLRNLNGR 704
LLQQME GLK+ADP D + YTGW GIA+LYL L+ V D YL + YVK++L L+ R
Sbjct: 43 LLQQMERGLKSADPRDGTGYTGWAGIAVLYLHLHNVFGDPAYLQMAHSYVKQSLNCLSRR 102
Query: 705 RVTFLCGDAGPLAVGAVVYHKLKSDGESQECITKLLQLQRTIVCRDSDLPDELLFGRAGY 884
+TFLCGDAGPLAV AV+YHK+ S+ +++ECIT+L+ L + D +P+E+L+GR GY
Sbjct: 103 SITFLCGDAGPLAVAAVLYHKMNSEKQAEECITRLIHLNKI----DPHVPNEMLYGRIGY 158
Query: 885 LYALLYVNTEMGPGAVCESAIKEVVDAIIDSGKTLSKEERKAERCPLLYQWHRKQYVGAA 1064
++ALL+VN G + +S I+++ + I+ SG+ LS++ A + PL+Y+W+++ YVGAA
Sbjct: 159 IFALLFVNKNFGEEKIPQSHIQQICENILTSGENLSRKRNLAAKSPLMYEWYQEYYVGAA 218
Query: 1065 HGMAGIYYMLMQPAAKVDQETLTEMVKPSIDYMRHKRFRSGNYPSSLSNETDRLVHWCHG 1244
HG+AGIYY LMQP+ +V+Q L +VKPS+D++ +F SGNYP L + D LVHWCHG
Sbjct: 219 HGLAGIYYYLMQPSLQVNQGKLHSLVKPSVDFVCRLKFPSGNYPPCLDDTRDLLVHWCHG 278
Query: 1245 APGVIHTLMQAYKVFKEEKYLTDAVECSDVIWQRGLLRKGYGICHGTAGNGY 1400
APGVI+ L+QAYKVFKEE+YL DA +C+DVIWQ GLL+KGYG+CHG AGN Y
Sbjct: 279 APGVIYMLIQAYKVFKEERYLCDAQQCADVIWQYGLLKKGYGLCHGAAGNAY 330
Score = 81.3 bits (199), Expect(2) = e-121
Identities = 34/49 (69%), Positives = 41/49 (83%)
Frame = +2
Query: 1424 TQDKKYLYRALQFAEWCLEYXAHGCRISDRPYSLFEGMGGRIHFLSDIL 1570
TQD KYLYRA +FAEWCL+Y HGCR +D P+SLFEGM G I+FL+D+L
Sbjct: 339 TQDLKYLYRACKFAEWCLDYGEHGCRTADTPFSLFEGMAGTIYFLADLL 387
>ref|NP_067270.1| lanC-like protein 1 [Mus musculus].
Length = 399
Score = 373 bits (958), Expect(2) = e-121
Identities = 178/352 (50%), Positives = 245/352 (69%)
Frame = +3
Query: 345 MEERAFPNPFPDYXXXXXXXXXXXXXXXXXLTPEELGLPFHSDGKIIHNFTRRIQSKIKD 524
M +RAFPNP+ DY F S G++ F+ R+ +KI++
Sbjct: 1 MAQRAFPNPYADYNKSLAENY------------------FDSTGRLTPEFSHRLTNKIRE 42
Query: 525 LLQQMEEGLKTADPHDCSAYTGWTGIALLYLQLYRVTCDQNYLLRSLDYVKRTLRNLNGR 704
LLQQME GLK+ADP D + YTGW GIA+LYL L+ V D YL + YVK++L L+ R
Sbjct: 43 LLQQMERGLKSADPRDGTGYTGWAGIAVLYLHLHNVFGDPAYLQMAHSYVKQSLNCLSRR 102
Query: 705 RVTFLCGDAGPLAVGAVVYHKLKSDGESQECITKLLQLQRTIVCRDSDLPDELLFGRAGY 884
+TFLCGDAGPLAV AV+YHK+ S+ +++ECIT+L+ L + D +P+E+L+GR GY
Sbjct: 103 SITFLCGDAGPLAVAAVLYHKMNSEKQAEECITRLIHLNKI----DPHVPNEMLYGRIGY 158
Query: 885 LYALLYVNTEMGPGAVCESAIKEVVDAIIDSGKTLSKEERKAERCPLLYQWHRKQYVGAA 1064
++ALL+VN G + +S I+++ + I+ SG+ LS++ A + PL+Y+W+++ YVGAA
Sbjct: 159 IFALLFVNKNFGEEKIPQSHIQQICENILTSGENLSRKRNLAAKSPLMYEWYQEYYVGAA 218
Query: 1065 HGMAGIYYMLMQPAAKVDQETLTEMVKPSIDYMRHKRFRSGNYPSSLSNETDRLVHWCHG 1244
HG+AGIYY LMQP+ +V+Q L +VKPS+D++ +F SGNYP L + D LVHWCHG
Sbjct: 219 HGLAGIYYYLMQPSLQVNQGKLHSLVKPSVDFVCRLKFPSGNYPPCLDDTRDLLVHWCHG 278
Query: 1245 APGVIHTLMQAYKVFKEEKYLTDAVECSDVIWQRGLLRKGYGICHGTAGNGY 1400
APGVI+ L+QAYKVFKEE+YL DA +C+DVIWQ GLL+KGYG+CHG AGN Y
Sbjct: 279 APGVIYMLIQAYKVFKEERYLCDAQQCADVIWQYGLLKKGYGLCHGAAGNAY 330
Score = 81.3 bits (199), Expect(2) = e-121
Identities = 34/49 (69%), Positives = 41/49 (83%)
Frame = +2
Query: 1424 TQDKKYLYRALQFAEWCLEYXAHGCRISDRPYSLFEGMGGRIHFLSDIL 1570
TQD KYLYRA +FAEWCL+Y HGCR +D P+SLFEGM G I+FL+D+L
Sbjct: 339 TQDLKYLYRACKFAEWCLDYGEHGCRTADTPFSLFEGMAGTIYFLADLL 387
>ref|NP_001177914.1| lanC-like protein 1 [Mus musculus].
Length = 399
Score = 373 bits (958), Expect(2) = e-121
Identities = 178/352 (50%), Positives = 245/352 (69%)
Frame = +3
Query: 345 MEERAFPNPFPDYXXXXXXXXXXXXXXXXXLTPEELGLPFHSDGKIIHNFTRRIQSKIKD 524
M +RAFPNP+ DY F S G++ F+ R+ +KI++
Sbjct: 1 MAQRAFPNPYADYNKSLAENY------------------FDSTGRLTPEFSHRLTNKIRE 42
Query: 525 LLQQMEEGLKTADPHDCSAYTGWTGIALLYLQLYRVTCDQNYLLRSLDYVKRTLRNLNGR 704
LLQQME GLK+ADP D + YTGW GIA+LYL L+ V D YL + YVK++L L+ R
Sbjct: 43 LLQQMERGLKSADPRDGTGYTGWAGIAVLYLHLHNVFGDPAYLQMAHSYVKQSLNCLSRR 102
Query: 705 RVTFLCGDAGPLAVGAVVYHKLKSDGESQECITKLLQLQRTIVCRDSDLPDELLFGRAGY 884
+TFLCGDAGPLAV AV+YHK+ S+ +++ECIT+L+ L + D +P+E+L+GR GY
Sbjct: 103 SITFLCGDAGPLAVAAVLYHKMNSEKQAEECITRLIHLNKI----DPHVPNEMLYGRIGY 158
Query: 885 LYALLYVNTEMGPGAVCESAIKEVVDAIIDSGKTLSKEERKAERCPLLYQWHRKQYVGAA 1064
++ALL+VN G + +S I+++ + I+ SG+ LS++ A + PL+Y+W+++ YVGAA
Sbjct: 159 IFALLFVNKNFGEEKIPQSHIQQICENILTSGENLSRKRNLAAKSPLMYEWYQEYYVGAA 218
Query: 1065 HGMAGIYYMLMQPAAKVDQETLTEMVKPSIDYMRHKRFRSGNYPSSLSNETDRLVHWCHG 1244
HG+AGIYY LMQP+ +V+Q L +VKPS+D++ +F SGNYP L + D LVHWCHG
Sbjct: 219 HGLAGIYYYLMQPSLQVNQGKLHSLVKPSVDFVCRLKFPSGNYPPCLDDTRDLLVHWCHG 278
Query: 1245 APGVIHTLMQAYKVFKEEKYLTDAVECSDVIWQRGLLRKGYGICHGTAGNGY 1400
APGVI+ L+QAYKVFKEE+YL DA +C+DVIWQ GLL+KGYG+CHG AGN Y
Sbjct: 279 APGVIYMLIQAYKVFKEERYLCDAQQCADVIWQYGLLKKGYGLCHGAAGNAY 330
Score = 81.3 bits (199), Expect(2) = e-121
Identities = 34/49 (69%), Positives = 41/49 (83%)
Frame = +2
Query: 1424 TQDKKYLYRALQFAEWCLEYXAHGCRISDRPYSLFEGMGGRIHFLSDIL 1570
TQD KYLYRA +FAEWCL+Y HGCR +D P+SLFEGM G I+FL+D+L
Sbjct: 339 TQDLKYLYRACKFAEWCLDYGEHGCRTADTPFSLFEGMAGTIYFLADLL 387
>ref|NP_775590.2| lanC-like protein 3 [Mus musculus].
Length = 420
Score = 152 bits (384), Expect(2) = 6e-43
Identities = 89/239 (37%), Positives = 131/239 (54%), Gaps = 7/239 (2%)
Frame = +3
Query: 705 RVTFLCGDAGPLAVGAVVYHKLKSDGESQECITKLLQLQRTIVCRDSDL----PDELLFG 872
R FL G AG AV +VYH L Q + K L VC DEL G
Sbjct: 117 RAAFLLGGAGVYAVATLVYHALGRPDYVQP-LGKFRAL--CAVCAPVSFLDCGSDELFVG 173
Query: 873 RAGYLYALLYVNTEMGPGAVCESAIKEVVDAIIDSGKTLSKEERKAERCPLLYQWHRKQY 1052
RAGYL A L + ++ + + IK + AI+DSGK + ++RK PL+Y ++ +Y
Sbjct: 174 RAGYLCAALVLKQKLAQEVLTPTQIKAICQAILDSGKQYALKKRKP--FPLMYSYYGTEY 231
Query: 1053 VGAAHGMAGIYYMLMQPAAKVDQETLTEMVKPSIDYMRHKRFRSGNYPSSLSNETDR--- 1223
+GAAHG++ I ML+ + E+V S+D++ + ++ N+P L +R
Sbjct: 232 LGAAHGLSSILQMLLSYQEHLKPSD-RELVWQSVDFLMEQE-QNCNWPPELGETIERENE 289
Query: 1224 LVHWCHGAPGVIHTLMQAYKVFKEEKYLTDAVECSDVIWQRGLLRKGYGICHGTAGNGY 1400
LVHWCHGAPG+ + +AY + K+ +YL + C ++ WQ+GLL+KG GICHG AG+ Y
Sbjct: 290 LVHWCHGAPGIAYLFAKAYLISKKPQYLDTCIRCGELTWQKGLLKKGPGICHGVAGSAY 348
Score = 41.6 bits (96), Expect(2) = 6e-43
Identities = 21/50 (42%), Positives = 31/50 (62%), Gaps = 1/50 (2%)
Frame = +2
Query: 1424 TQDKKYLYRALQFAEWCL-EYXAHGCRISDRPYSLFEGMGGRIHFLSDIL 1570
T + KY+YRA +FA++ E G R+ + YSL+EG G + FL D+L
Sbjct: 357 TGNSKYIYRAQRFAQFLFTEEFKSGSRVLESIYSLYEGFSGTVCFLIDLL 406
Database: RefSeq44_MP.fasta
Posted date: Nov 15, 2010 4:36 PM
Number of letters in database: 15,452,059
Number of sequences in database: 29,866
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 29866
Number of Hits to DB: 52,011,434
Number of extensions: 1437030
Number of successful extensions: 7390
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 7293
Number of HSP's successfully gapped: 10
Length of query: 524
Length of database: 15,452,059
Length adjustment: 106
Effective length of query: 418
Effective length of database: 12,286,263
Effective search space: 5135657934
Effective search space used: 5135657934
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqSP_Rel44
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20070806C-001536
(1574 letters)
Database: RefSeq44_SP.fasta
20,576 sequences; 9,542,844 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_001926406.2| PREDICTED: LanC lantibiotic synthetase compo... 143 4e-52
>ref|XP_001926406.2| PREDICTED: LanC lantibiotic synthetase component C-like 1 [Sus
scrofa].
Length = 171
Score = 143 bits (360), Expect(2) = 4e-52
Identities = 61/102 (59%), Positives = 79/102 (77%)
Frame = +3
Query: 1095 MQPAAKVDQETLTEMVKPSIDYMRHKRFRSGNYPSSLSNETDRLVHWCHGAPGVIHTLMQ 1274
M P+ +V L +VKPS+DY+ +F SGNYP + + D LVHWCHG+PGVI+ L+Q
Sbjct: 1 MLPSLQVSHAKLQSLVKPSVDYVCQLKFPSGNYPPCVDDTRDLLVHWCHGSPGVIYMLIQ 60
Query: 1275 AYKVFKEEKYLTDAVECSDVIWQRGLLRKGYGICHGTAGNGY 1400
AYKVF+EE+YL DA +C+DVIW+ GLL+KGYG+CHGTAGN Y
Sbjct: 61 AYKVFREERYLNDAYQCADVIWKYGLLKKGYGLCHGTAGNAY 102
Score = 80.9 bits (198), Expect(2) = 4e-52
Identities = 34/49 (69%), Positives = 40/49 (81%)
Frame = +2
Query: 1424 TQDKKYLYRALQFAEWCLEYXAHGCRISDRPYSLFEGMGGRIHFLSDIL 1570
TQD KYLYRA +FAEWCL+Y HGCR D P+SLFEGM G I+FL+D+L
Sbjct: 111 TQDMKYLYRACKFAEWCLDYGEHGCRTPDTPFSLFEGMAGTIYFLADLL 159
Database: RefSeq44_SP.fasta
Posted date: Nov 15, 2010 4:36 PM
Number of letters in database: 9,542,844
Number of sequences in database: 20,576
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 20576
Number of Hits to DB: 33,498,520
Number of extensions: 962795
Number of successful extensions: 6259
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 6186
Number of HSP's successfully gapped: 2
Length of query: 524
Length of database: 9,542,844
Length adjustment: 102
Effective length of query: 422
Effective length of database: 7,444,092
Effective search space: 3141406824
Effective search space used: 3141406824
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)