Search to RefSeqBP_Rel44
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20070806C-002574
(1042 letters)
Database: RefSeq44_BP.fasta
33,615 sequences; 18,071,151 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_002687024.1| PREDICTED: WD repeat domain 86 [Bos taurus]. 413 e-115
Alignment gi|NP_001178268.1| WD repeat-containing protein 86 [Bos taurus]. 411 e-115
Alignment gi|NP_001157418.1| WD repeat-containing protein 38 [Bos taurus]. 136 3e-32
Alignment gi|NP_001069717.1| F-box/WD repeat-containing protein 7 [Bos ta... 112 4e-25
Alignment gi|XP_002698507.1| PREDICTED: TAF5 RNA polymerase II, TATA box ... 109 5e-24
Alignment gi|XP_002703257.1| PREDICTED: TAF5 RNA polymerase II, TATA box ... 109 5e-24
Alignment gi|NP_001098945.1| WD repeat-containing protein 5 [Bos taurus]. 100 2e-21
Alignment gi|NP_777088.1| platelet-activating factor acetylhydrolase IB s... 100 3e-21
Alignment gi|XP_002696296.1| PREDICTED: F-box and WD repeat domain contai... 97 2e-20
Alignment gi|XP_612428.5| PREDICTED: F-box and WD repeat domain containin... 97 2e-20
>ref|XP_002687024.1| PREDICTED: WD repeat domain 86 [Bos taurus].
Length = 507
Score = 413 bits (1062), Expect = e-115
Identities = 198/215 (92%), Positives = 204/215 (94%)
Frame = +1
Query: 397 SALRVCADHRGGINWLSLSPDGQRLLTGSEDGTARLWSTADGQCCALLQGHESYVTFCQL 576
SALRVCADHRGGINWLSLSPDGQRLLTGSEDGTARLWSTADG CCALLQGHESYVTFCQL
Sbjct: 6 SALRVCADHRGGINWLSLSPDGQRLLTGSEDGTARLWSTADGTCCALLQGHESYVTFCQL 65
Query: 577 EDEAAFTCSADCTIRKWDVLTGQCLQVFRGHTSIVNRILVTNNQLFSSSYDRTARAWSVD 756
EDEAAFTCSADCTIRKWDVLTGQCLQVFRGHTSIVNRILV +NQLFSSSYDRTARAWSVD
Sbjct: 66 EDEAAFTCSADCTIRKWDVLTGQCLQVFRGHTSIVNRILVADNQLFSSSYDRTARAWSVD 125
Query: 757 KGQVSREFRGHRNCVLTLAYSAPWDLPGAPCVEEAVAGGLLVTGSTDGTAKVWQVASGCC 936
+GQV+REFRGH NCVLTLAY+ GAPC+EEAVAGGLLVTGSTD TAKVWQVASGCC
Sbjct: 126 RGQVAREFRGHCNCVLTLAYA------GAPCMEEAVAGGLLVTGSTDATAKVWQVASGCC 179
Query: 937 HQTLRGHTGAVLCLVLDTPGHTAFTGSTDATIRAW 1041
HQTLRGHTGAVLCLVLD PGHTAFTGSTDAT+RAW
Sbjct: 180 HQTLRGHTGAVLCLVLDAPGHTAFTGSTDATVRAW 214
Score = 66.6 bits (161), Expect = 3e-11
Identities = 35/76 (46%), Positives = 44/76 (57%), Gaps = 2/76 (2%)
Frame = +1
Query: 460 GQRLLTGSEDGTARLWSTADGQCCALLQGHESYVTFCQLE--DEAAFTCSADCTIRKWDV 633
G L+TGS D TA++W A G C L+GH V L+ AFT S D T+R WD+
Sbjct: 157 GGLLVTGSTDATAKVWQVASGCCHQTLRGHTGAVLCLVLDAPGHTAFTGSTDATVRAWDI 216
Query: 634 LTGQCLQVFRGHTSIV 681
L+GQ L+VFR H V
Sbjct: 217 LSGQQLRVFREHQGSV 232
Score = 58.9 bits (141), Expect = 7e-09
Identities = 35/111 (31%), Positives = 46/111 (41%)
Frame = +1
Query: 709 LFSSSYDRTARAWSVDKGQVSREFRGHRNCVLTLAYSAPWDLPGAPCVEEAVAGGLLVTG 888
L + S DRT + W D G+ R F HR+ V L Y A G L TG
Sbjct: 378 LKAGSADRTVKCWLADTGERVRTFTAHRHSVSALKYHA----------------GTLFTG 421
Query: 889 STDGTAKVWQVASGCCHQTLRGHTGAVLCLVLDTPGHTAFTGSTDATIRAW 1041
S D A+ + SG + RGH + C + G +T S D +R W
Sbjct: 422 SGDARARAFDAQSGALRRVFRGHAFVINC--IQVHGQVLYTASHDGALRLW 470
Score = 56.6 bits (135), Expect = 4e-08
Identities = 37/129 (28%), Positives = 51/129 (39%), Gaps = 10/129 (7%)
Frame = +1
Query: 469 LLTGSEDGTARLWSTADGQCCALLQGHESYVTFCQLEDEAAFTCSADCTIRKWDVLTGQC 648
L GS D T + W G+ H V+ + FT S D R +D +G
Sbjct: 378 LKAGSADRTVKCWLADTGERVRTFTAHRHSVSALKYHAGTLFTGSGDARARAFDAQSGAL 437
Query: 649 LQVFRGHTSIVNRILVTNNQLFSSSYDRTARAWSV----------DKGQVSREFRGHRNC 798
+VFRGH ++N I V L+++S+D R W V K +SR F C
Sbjct: 438 RRVFRGHAFVINCIQVHGQVLYTASHDGALRLWDVRGLPPPRAAAPKRSLSRLFSNKVGC 497
Query: 799 VLTLAYSAP 825
A P
Sbjct: 498 AAAAAPLQP 506
Score = 51.2 bits (121), Expect = 2e-06
Identities = 33/107 (30%), Positives = 49/107 (45%)
Frame = +1
Query: 601 SADCTIRKWDVLTGQCLQVFRGHTSIVNRILVTNNQLFSSSYDRTARAWSVDKGQVSREF 780
SAD T++ W TG+ ++ F H V+ + LF+ S D ARA+ G + R F
Sbjct: 382 SADRTVKCWLADTGERVRTFTAHRHSVSALKYHAGTLFTGSGDARARAFDAQSGALRRVF 441
Query: 781 RGHRNCVLTLAYSAPWDLPGAPCVEEAVAGGLLVTGSTDGTAKVWQV 921
RGH + C++ V G +L T S DG ++W V
Sbjct: 442 RGHAFVI--------------NCIQ--VHGQVLYTASHDGALRLWDV 472
>ref|NP_001178268.1| WD repeat-containing protein 86 [Bos taurus].
Length = 371
Score = 411 bits (1057), Expect = e-115
Identities = 198/215 (92%), Positives = 203/215 (94%)
Frame = +1
Query: 397 SALRVCADHRGGINWLSLSPDGQRLLTGSEDGTARLWSTADGQCCALLQGHESYVTFCQL 576
SALRVCADHRGGINWLSLSPDGQRLLTGSEDGTARLWSTADG CCALLQGHESYVTFCQL
Sbjct: 6 SALRVCADHRGGINWLSLSPDGQRLLTGSEDGTARLWSTADGTCCALLQGHESYVTFCQL 65
Query: 577 EDEAAFTCSADCTIRKWDVLTGQCLQVFRGHTSIVNRILVTNNQLFSSSYDRTARAWSVD 756
EDEAAFTCSADCTIRKWDVLTGQCLQVFRGHTSIVNRILV +NQLFSSSYDRTARAWSVD
Sbjct: 66 EDEAAFTCSADCTIRKWDVLTGQCLQVFRGHTSIVNRILVADNQLFSSSYDRTARAWSVD 125
Query: 757 KGQVSREFRGHRNCVLTLAYSAPWDLPGAPCVEEAVAGGLLVTGSTDGTAKVWQVASGCC 936
+GQV+REFRGH NCVLTLAY+ GAPCVEEAVAGGLLVTGSTD TAKVWQVASGCC
Sbjct: 126 RGQVAREFRGHCNCVLTLAYA------GAPCVEEAVAGGLLVTGSTDATAKVWQVASGCC 179
Query: 937 HQTLRGHTGAVLCLVLDTPGHTAFTGSTDATIRAW 1041
HQTLRGHTGAVLCLVLD PG TAFTGSTDAT+RAW
Sbjct: 180 HQTLRGHTGAVLCLVLDAPGRTAFTGSTDATVRAW 214
Score = 123 bits (308), Expect = 3e-28
Identities = 71/196 (36%), Positives = 94/196 (47%), Gaps = 2/196 (1%)
Frame = +1
Query: 460 GQRLLTGSEDGTARLWSTADGQCCALLQGHESYVTFCQLE--DEAAFTCSADCTIRKWDV 633
G L+TGS D TA++W A G C L+GH V L+ AFT S D T+R WD+
Sbjct: 157 GGLLVTGSTDATAKVWQVASGCCHQTLRGHTGAVLCLVLDAPGRTAFTGSTDATVRAWDI 216
Query: 634 LTGQCLQVFRGHTSIVNRILVTNNQLFSSSYDRTARAWSVDKGQVSREFRGHRNCVLTLA 813
L+GQ L+VFR H V + + N ++S S DRT + W D G+ R F HR+ V L
Sbjct: 217 LSGQQLRVFREHQGSVICLELVNRHVYSGSADRTVKCWLADTGERVRTFTAHRHSVSALK 276
Query: 814 YSAPWDLPGAPCVEEAVAGGLLVTGSTDGTAKVWQVASGCCHQTLRGHTGAVLCLVLDTP 993
Y A G L TGS D A+ + SG + RGH + C +
Sbjct: 277 YHA----------------GTLFTGSGDARARAFDAQSGALRRVFRGHAFVINC--IQVH 318
Query: 994 GHTAFTGSTDATIRAW 1041
G +T S D +R W
Sbjct: 319 GQVLYTASHDGALRLW 334
Score = 80.5 bits (197), Expect = 2e-15
Identities = 51/170 (30%), Positives = 74/170 (43%), Gaps = 3/170 (1%)
Frame = +1
Query: 421 HRGGINWLSLSPDGQRLLTGSEDGTARLWSTADGQCCALLQGHESYVTFCQLEDEAAFTC 600
H G + L L G+ TGS D T R W GQ + + H+ V +L + ++
Sbjct: 186 HTGAVLCLVLDAPGRTAFTGSTDATVRAWDILSGQQLRVFREHQGSVICLELVNRHVYSG 245
Query: 601 SADCTIRKWDVLTGQCLQVFRGHTSIVNRILVTNNQLFSSSYDRTARAWSVDKGQVSREF 780
SAD T++ W TG+ ++ F H V+ + LF+ S D ARA+ G + R F
Sbjct: 246 SADRTVKCWLADTGERVRTFTAHRHSVSALKYHAGTLFTGSGDARARAFDAQSGALRRVF 305
Query: 781 RGHR---NCVLTLAYSAPWDLPGAPCVEEAVAGGLLVTGSTDGTAKVWQV 921
RGH NC+ V G +L T S DG ++W V
Sbjct: 306 RGHAFVINCI-------------------QVHGQVLYTASHDGALRLWDV 336
>ref|NP_001157418.1| WD repeat-containing protein 38 [Bos taurus].
Length = 296
Score = 136 bits (343), Expect = 3e-32
Identities = 81/214 (37%), Positives = 107/214 (50%), Gaps = 7/214 (3%)
Frame = +1
Query: 421 HRGGINWLSLSPDGQRLLTGSEDGTARLWSTADGQCCALLQGHESYVTFCQLEDEAAFTC 600
HRG +N + SPDGQRLLT SEDG W T G+ L+GH+ V FC+ +
Sbjct: 20 HRGEVNSSAFSPDGQRLLTASEDGCVYGWETQSGRLLWRLRGHKGPVRFCRFSPDGRLFA 79
Query: 601 SADC--TIRKWDVLTGQCLQVFRGHTSIVNRILVTNN--QLFSSSYDRTARAWSVDKGQV 768
S C TIR WD +CLQV +GH V + +++ QL S +D+ W V GQV
Sbjct: 80 STSCDRTIRLWDATDAKCLQVLKGHQRSVETVSFSHDSKQLASGGWDKRVMLWEVQSGQV 139
Query: 769 SREFRGHRNCVLTLAYSAPWDLPGAPCVEEAVAGGLLVTGSTDGTAKVWQVAS---GCCH 939
R F GHR+ V + ++ P + C L TGS D T ++W + + G H
Sbjct: 140 LRHFVGHRDSVQSSDFA-----PSSDC---------LATGSWDSTIRMWDLRAGTPGIFH 185
Query: 940 QTLRGHTGAVLCLVLDTPGHTAFTGSTDATIRAW 1041
Q L GH G + CL G A +GS D TI W
Sbjct: 186 QELEGHRGNISCLCYSPSGLLA-SGSWDKTIHIW 218
Score = 65.5 bits (158), Expect = 8e-11
Identities = 52/213 (24%), Positives = 81/213 (38%), Gaps = 6/213 (2%)
Frame = +1
Query: 403 LRVCADHRGGINWLSLSPDGQRLLTGSEDGTARLWSTADGQCCALLQGHESYVTFCQL-- 576
L+V H+ + +S S D ++L +G D LW GQ GH V
Sbjct: 98 LQVLKGHQRSVETVSFSHDSKQLASGGWDKRVMLWEVQSGQVLRHFVGHRDSVQSSDFAP 157
Query: 577 EDEAAFTCSADCTIRKWDVLTGQ---CLQVFRGHTSIVNRILVTNNQLFSS-SYDRTARA 744
+ T S D TIR WD+ G Q GH ++ + + + L +S S+D+T
Sbjct: 158 SSDCLATGSWDSTIRMWDLRAGTPGIFHQELEGHRGNISCLCYSPSGLLASGSWDKTIHI 217
Query: 745 WSVDKGQVSREFRGHRNCVLTLAYSAPWDLPGAPCVEEAVAGGLLVTGSTDGTAKVWQVA 924
W + + +GH V ++A+S G L + KVW
Sbjct: 218 WKPSTRSLLIQLKGHITWVKSIAFSPD--------------GQQLASAGYSHMVKVWDCN 263
Query: 925 SGCCHQTLRGHTGAVLCLVLDTPGHTAFTGSTD 1023
+G C +TL+G G +G+ D
Sbjct: 264 TGKCTETLKGVLNVAHACAFMPDGKLLVSGAVD 296
>ref|NP_001069717.1| F-box/WD repeat-containing protein 7 [Bos taurus].
Length = 627
Score = 112 bits (281), Expect = 4e-25
Identities = 63/194 (32%), Positives = 91/194 (46%)
Frame = +1
Query: 460 GQRLLTGSEDGTARLWSTADGQCCALLQGHESYVTFCQLEDEAAFTCSADCTIRKWDVLT 639
G R+++GS+D T ++WS G+C L GH V Q+ D + S D T++ W+ T
Sbjct: 311 GNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDNIIISGSTDRTLKVWNAET 370
Query: 640 GQCLQVFRGHTSIVNRILVTNNQLFSSSYDRTARAWSVDKGQVSREFRGHRNCVLTLAYS 819
G+C+ GHTS V + + ++ S S D T R W ++ GQ GH V + Y
Sbjct: 371 GECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYD 430
Query: 820 APWDLPGAPCVEEAVAGGLLVTGSTDGTAKVWQVASGCCHQTLRGHTGAVLCLVLDTPGH 999
G +V+G+ D KVW + C TL+GHT V L D G
Sbjct: 431 ----------------GRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQFD--GI 472
Query: 1000 TAFTGSTDATIRAW 1041
+GS D +IR W
Sbjct: 473 HVVSGSLDTSIRVW 486
Score = 102 bits (253), Expect = 7e-22
Identities = 57/196 (29%), Positives = 90/196 (45%), Gaps = 3/196 (1%)
Frame = +1
Query: 463 QRLLTGSEDGTARLWSTADGQCCALLQGHESYVTFCQLEDEAAFTCSADCTIRKWDVLTG 642
+R+++GS D T R+W GQC +L GH + V Q + + + D ++ WD T
Sbjct: 392 KRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETE 451
Query: 643 QCLQVFRGHTSIVNRILVTNNQLFSSSYDRTARAWSVDKGQVSREFRGHRNCVLTLAYSA 822
CL +GHT+ V + + S S D + R W V+ G GH++ +
Sbjct: 452 TCLHTLQGHTNRVYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGM---- 507
Query: 823 PWDLPGAPCVEEAVAGGLLVTGSTDGTAKVWQVASGCCHQTLRG---HTGAVLCLVLDTP 993
+ +LV+G+ D T K+W + +G C QTL+G H AV CL +
Sbjct: 508 ------------ELKDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNK- 554
Query: 994 GHTAFTGSTDATIRAW 1041
+ T S D T++ W
Sbjct: 555 -NFVITSSDDGTVKLW 569
Score = 84.7 bits (208), Expect = 1e-16
Identities = 46/161 (28%), Positives = 77/161 (47%), Gaps = 3/161 (1%)
Frame = +1
Query: 457 DGQRLLTGSEDGTARLWSTADGQCCALLQGHESYVTFCQLEDEAAFTCSADCTIRKWDVL 636
DG+R+++G+ D ++W C LQGH + V Q + + S D +IR WDV
Sbjct: 430 DGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQFDGIHVVSGSLDTSIRVWDVE 489
Query: 637 TGQCLQVFRGHTSIVNRILVTNNQLFSSSYDRTARAWSVDKGQVSREFRG---HRNCVLT 807
TG C+ GH S+ + + + +N L S + D T + W + GQ + +G H++ V
Sbjct: 490 TGNCIHTLTGHQSLTSGMELKDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTC 549
Query: 808 LAYSAPWDLPGAPCVEEAVAGGLLVTGSTDGTAKVWQVASG 930
L ++ ++T S DGT K+W + +G
Sbjct: 550 LQFNK----------------NFVITSSDDGTVKLWDLKTG 574
Score = 78.6 bits (192), Expect = 9e-15
Identities = 40/113 (35%), Positives = 61/113 (53%), Gaps = 3/113 (2%)
Frame = +1
Query: 445 SLSPDGQRLLTGSEDGTARLWSTADGQCCALLQGHESYVTFCQLEDEAAFTCSADCTIRK 624
SL DG +++GS D + R+W G C L GH+S + +L+D + +AD T++
Sbjct: 466 SLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKDNILVSGNADSTVKI 525
Query: 625 WDVLTGQCLQVFRG---HTSIVNRILVTNNQLFSSSYDRTARAWSVDKGQVSR 774
WD+ TGQCLQ +G H S V + N + +SS D T + W + G+ R
Sbjct: 526 WDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGEFIR 578
Score = 65.9 bits (159), Expect = 6e-11
Identities = 41/131 (31%), Positives = 59/131 (45%), Gaps = 1/131 (0%)
Frame = +1
Query: 652 QVFRGHTS-IVNRILVTNNQLFSSSYDRTARAWSVDKGQVSREFRGHRNCVLTLAYSAPW 828
+V +GH ++ + N++ S S D T + WS G+ R GH V W
Sbjct: 294 KVLKGHDDHVITCLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGV--------W 345
Query: 829 DLPGAPCVEEAVAGGLLVTGSTDGTAKVWQVASGCCHQTLRGHTGAVLCLVLDTPGHTAF 1008
+ ++++GSTD T KVW +G C TL GHT V C+ L
Sbjct: 346 --------SSQMRDNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHE--KRVV 395
Query: 1009 TGSTDATIRAW 1041
+GS DAT+R W
Sbjct: 396 SGSRDATLRVW 406
>ref|XP_002698507.1| PREDICTED: TAF5 RNA polymerase II, TATA box binding protein
(TBP)-associated factor, 100kDa [Bos taurus].
Length = 800
Score = 109 bits (272), Expect = 5e-24
Identities = 73/219 (33%), Positives = 95/219 (43%), Gaps = 4/219 (1%)
Frame = +1
Query: 397 SALRVCADHRGGINWLSLSPDGQRLLTGSEDGTARLWSTADGQCCALLQGHESYVTFCQL 576
S L++ H G + S SPD LL+ SEDGT RLWS C +GH V Q
Sbjct: 534 SELKILYGHSGPVYGASFSPDRNYLLSSSEDGTVRLWSLQTFTCLVGYKGHNYPVWDTQF 593
Query: 577 EDEAAFTCSA--DCTIRKWDVLTGQCLQVFRGHTSIVN--RILVTNNQLFSSSYDRTARA 744
+ S D R W Q L++F GH + VN R +N + + S DRT R
Sbjct: 594 SPYGYYFVSGGHDRVARLWATDHYQPLRIFAGHLADVNCTRFHPNSNYVATGSADRTVRL 653
Query: 745 WSVDKGQVSREFRGHRNCVLTLAYSAPWDLPGAPCVEEAVAGGLLVTGSTDGTAKVWQVA 924
W V G R F GH+ + +L +S G L TG+TDG +W +
Sbjct: 654 WDVLNGNCVRIFTGHKGPIHSLTFSPN--------------GRFLATGATDGRVLLWDIG 699
Query: 925 SGCCHQTLRGHTGAVLCLVLDTPGHTAFTGSTDATIRAW 1041
G L+GHT V L G +GS D T+R W
Sbjct: 700 HGLMVGELKGHTDTVCSLRFSRDGEILASGSMDNTVRLW 738
>ref|XP_002703257.1| PREDICTED: TAF5 RNA polymerase II, TATA box binding protein
(TBP)-associated factor, 100kDa [Bos taurus].
Length = 800
Score = 109 bits (272), Expect = 5e-24
Identities = 73/219 (33%), Positives = 95/219 (43%), Gaps = 4/219 (1%)
Frame = +1
Query: 397 SALRVCADHRGGINWLSLSPDGQRLLTGSEDGTARLWSTADGQCCALLQGHESYVTFCQL 576
S L++ H G + S SPD LL+ SEDGT RLWS C +GH V Q
Sbjct: 534 SELKILYGHSGPVYGASFSPDRNYLLSSSEDGTVRLWSLQTFTCLVGYKGHNYPVWDTQF 593
Query: 577 EDEAAFTCSA--DCTIRKWDVLTGQCLQVFRGHTSIVN--RILVTNNQLFSSSYDRTARA 744
+ S D R W Q L++F GH + VN R +N + + S DRT R
Sbjct: 594 SPYGYYFVSGGHDRVARLWATDHYQPLRIFAGHLADVNCTRFHPNSNYVATGSADRTVRL 653
Query: 745 WSVDKGQVSREFRGHRNCVLTLAYSAPWDLPGAPCVEEAVAGGLLVTGSTDGTAKVWQVA 924
W V G R F GH+ + +L +S G L TG+TDG +W +
Sbjct: 654 WDVLNGNCVRIFTGHKGPIHSLTFSPN--------------GRFLATGATDGRVLLWDIG 699
Query: 925 SGCCHQTLRGHTGAVLCLVLDTPGHTAFTGSTDATIRAW 1041
G L+GHT V L G +GS D T+R W
Sbjct: 700 HGLMVGELKGHTDTVCSLRFSRDGEILASGSMDNTVRLW 738
>ref|NP_001098945.1| WD repeat-containing protein 5 [Bos taurus].
Length = 334
Score = 100 bits (249), Expect = 2e-21
Identities = 62/219 (28%), Positives = 101/219 (46%), Gaps = 7/219 (3%)
Frame = +1
Query: 406 RVCADHRGGINWLSLSPDGQRLLTGSEDGTARLWSTADGQCCALLQGHESYVTFCQLEDE 585
+ + H+ GI+ ++ S D L++ S+D T ++W + G+C L+GH +YV C +
Sbjct: 81 KTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQ 140
Query: 586 AAFTCSA--DCTIRKWDVLTGQCLQVFRGHTSIVNRILVT--NNQLFSSSYDRTARAWSV 753
+ S D ++R WDV TG+CL+ H+ V+ + + + SSSYD R W
Sbjct: 141 SNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT 200
Query: 754 DKGQVSREFRGHRNCVLTLAYSAPWDLPGAPCVEEAVAGGLLVTGSTDGTAKVWQVASGC 933
GQ C+ TL D P V+ + G ++ + D T K+W + G
Sbjct: 201 ASGQ----------CLKTLIDD---DNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGK 247
Query: 934 CHQTLRGHTGAVLCLVLD---TPGHTAFTGSTDATIRAW 1041
C +T GH C+ + T G +GS D + W
Sbjct: 248 CLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIW 286
Score = 88.2 bits (217), Expect = 1e-17
Identities = 55/214 (25%), Positives = 98/214 (45%), Gaps = 5/214 (2%)
Frame = +1
Query: 415 ADHRGGINWLSLSPDGQRLLTGSEDGTARLWSTADGQCCALLQGHESYVTFCQLEDEAAF 594
A H ++ + SP+G+ L + S D ++W DG+ + GH+ ++ ++
Sbjct: 42 AGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNL 101
Query: 595 TCSA--DCTIRKWDVLTGQCLQVFRGHTSIV--NRILVTNNQLFSSSYDRTARAWSVDKG 762
SA D T++ WDV +G+CL+ +GH++ V +N + S S+D + R W V G
Sbjct: 102 LVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTG 161
Query: 763 QVSREFRGHRNCVLTLAYSAPWDLPGAPCVEEAVAGGLLVTGSTDGTAKVWQVASGCCHQ 942
+ + H + V + ++ G L+V+ S DG ++W ASG C +
Sbjct: 162 KCLKTLPAHSDPVSAVHFNRD--------------GSLIVSSSYDGLCRIWDTASGQCLK 207
Query: 943 TLRGHTGAVLCLVLDTP-GHTAFTGSTDATIRAW 1041
TL + V +P G + D T++ W
Sbjct: 208 TLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW 241
Score = 69.7 bits (169), Expect = 4e-12
Identities = 51/224 (22%), Positives = 91/224 (40%), Gaps = 11/224 (4%)
Frame = +1
Query: 403 LRVCADHRGGINWLSLSPDGQRLLTGSEDGTARLWSTADGQCCALLQGHESYVTFCQLED 582
L+ H + + +P +++GS D + R+W G+C L H V+
Sbjct: 122 LKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNR 181
Query: 583 EAAFTCSA--DCTIRKWDVLTGQCLQVF----RGHTSIVNRILVTNNQLFSSSYDRTARA 744
+ + S+ D R WD +GQCL+ S V + + +++ D T +
Sbjct: 182 DGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFV-KFSPNGKYILAATLDNTLKL 240
Query: 745 WSVDKGQVSREFRGHRN---CVLTLAYSAPWDLPGAPCVEEAVAGGLLVTGSTDGTAKVW 915
W KG+ + + GH+N C+ A + + G G +V+GS D +W
Sbjct: 241 WDYSKGKCLKTYTGHKNEKYCIF-----ANFSVTG---------GKWIVSGSEDNLVYIW 286
Query: 916 QVASGCCHQTLRGHTGAVLCLVLDTPGHTAFTGS--TDATIRAW 1041
+ + Q L+GHT V+ + + + D TI+ W
Sbjct: 287 NLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 330
Score = 66.6 bits (161), Expect = 3e-11
Identities = 43/180 (23%), Positives = 78/180 (43%), Gaps = 8/180 (4%)
Frame = +1
Query: 403 LRVCADHRGGINWLSLSPDGQRLLTGSEDGTARLWSTADGQCC-ALLQGHESYVTFCQLE 579
L+ H ++ + + DG +++ S DG R+W TA GQC L+ V+F +
Sbjct: 164 LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFS 223
Query: 580 DEAAFTCSA--DCTIRKWDVLTGQCLQVFRGHTS-----IVNRILVTNNQLFSSSYDRTA 738
+ +A D T++ WD G+CL+ + GH + N + + S S D
Sbjct: 224 PNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLV 283
Query: 739 RAWSVDKGQVSREFRGHRNCVLTLAYSAPWDLPGAPCVEEAVAGGLLVTGSTDGTAKVWQ 918
W++ ++ ++ +GH + V++ A E +A L D T K+W+
Sbjct: 284 YIWNLQTKEIVQKLQGHTDVVISTACHP---------TENIIASAAL---ENDKTIKLWK 331
>ref|NP_777088.1| platelet-activating factor acetylhydrolase IB subunit alpha [Bos
taurus].
Length = 410
Score = 100 bits (248), Expect = 3e-21
Identities = 65/224 (29%), Positives = 103/224 (45%), Gaps = 12/224 (5%)
Frame = +1
Query: 406 RVCADHRGGINWLSLSPDGQRLLTGSEDGTARLWSTADGQCCALLQGHESYVTFCQL--E 579
R H + +S G+ L + S D T +LW +C + GH+ V+ +
Sbjct: 144 RTLKGHTDSVEDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVAIMPN 203
Query: 580 DEAAFTCSADCTIRKWDVLTGQCLQVFRGHTSIVNRILVTNNQ----LFSSSYDRTARAW 747
+ + S D TI+ W+V TG C++ F GH V +V NQ + S S D+T R W
Sbjct: 204 GDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVR--MVRPNQDGTLIASCSNDQTVRVW 261
Query: 748 SVDKGQVSREFRGHRNCVLTLA------YSAPWDLPGAPCVEEAVAGGLLVTGSTDGTAK 909
V + E R H + V ++ YS+ + G+ + G L++GS D T K
Sbjct: 262 VVATKECKAELREHEHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIK 321
Query: 910 VWQVASGCCHQTLRGHTGAVLCLVLDTPGHTAFTGSTDATIRAW 1041
+W V++G C TL GH V ++ + G + + D T+R W
Sbjct: 322 MWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVW 365
Score = 82.8 bits (203), Expect = 5e-16
Identities = 56/237 (23%), Positives = 91/237 (38%), Gaps = 24/237 (10%)
Frame = +1
Query: 403 LRVCADHRGGINWLSLSPDGQRLLTGSEDGTARLWSTADGQCCALLQGHESYVTFCQLED 582
+R H ++ +++ P+G +++ S D T ++W G C GH +V +
Sbjct: 185 IRTMHGHDHNVSSVAIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQ 244
Query: 583 EAAF--TCSADCTIRKWDVLTGQCLQVFRGHTSIVNRIL------------VTNNQ---- 708
+ +CS D T+R W V T +C R H +V I T ++
Sbjct: 245 DGTLIASCSNDQTVRVWVVATKECKAELREHEHVVECISWAPESSYSSISEATGSETKKS 304
Query: 709 ------LFSSSYDRTARAWSVDKGQVSREFRGHRNCVLTLAYSAPWDLPGAPCVEEAVAG 870
L S S D+T + W V G GH N V + + + G
Sbjct: 305 GKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHS--------------GG 350
Query: 871 GLLVTGSTDGTAKVWQVASGCCHQTLRGHTGAVLCLVLDTPGHTAFTGSTDATIRAW 1041
+++ + D T +VW + C +TL H V L TGS D T++ W
Sbjct: 351 KFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVW 407
Score = 70.1 bits (170), Expect = 3e-12
Identities = 52/192 (27%), Positives = 79/192 (41%), Gaps = 26/192 (13%)
Frame = +1
Query: 421 HRGGINWLSLSPDGQRLLTGSEDGTARLWSTADGQCCALLQGHESYVTFCQLEDEAAFTC 600
HR + + + DG + + S D T R+W A +C A L+ HE V E++++
Sbjct: 233 HREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHEHVVECISWAPESSYSS 292
Query: 601 ----------------------SADCTIRKWDVLTGQCLQVFRGHTSIVNRILVTNNQLF 714
S D TI+ WDV TG CL GH + V +L + F
Sbjct: 293 ISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKF 352
Query: 715 --SSSYDRTARAWSVDKGQVSREFRGHRNCVLTLAY--SAPWDLPGAPCVEEAVAGGLLV 882
S + D+T R W + + H + V +L + +AP+ +V
Sbjct: 353 ILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPY----------------VV 396
Query: 883 TGSTDGTAKVWQ 918
TGS D T KVW+
Sbjct: 397 TGSVDQTVKVWE 408
Score = 65.9 bits (159), Expect = 6e-11
Identities = 52/172 (30%), Positives = 73/172 (42%), Gaps = 4/172 (2%)
Frame = +1
Query: 538 LQGHESYVTFCQLEDEAAFTCSA--DCTIRKWDVLTGQCLQVFRGHTSIVNRILV--TNN 705
L GH S VT + SA D TI+ WD TG + +GHT V I +
Sbjct: 104 LSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVEDISFDHSGK 163
Query: 706 QLFSSSYDRTARAWSVDKGQVSREFRGHRNCVLTLAYSAPWDLPGAPCVEEAVAGGLLVT 885
L S S D T + W + R GH + V ++A +P G +V+
Sbjct: 164 LLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVAI-----MPN---------GDHIVS 209
Query: 886 GSTDGTAKVWQVASGCCHQTLRGHTGAVLCLVLDTPGHTAFTGSTDATIRAW 1041
S D T K+W+V +G C +T GH V + + G + S D T+R W
Sbjct: 210 ASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVW 261
>ref|XP_002696296.1| PREDICTED: F-box and WD repeat domain containing 11 [Bos taurus].
Length = 542
Score = 97.1 bits (240), Expect = 2e-20
Identities = 61/216 (28%), Positives = 95/216 (43%), Gaps = 3/216 (1%)
Frame = +1
Query: 403 LRVCADHRGGINWLSLSPDGQRLLTGSEDGTARLWSTADGQCCALLQGHESYVTFCQLED 582
L+V H G + L L D + ++TGS D T R+W G+ L H V + +
Sbjct: 273 LKVLTGHTGSV--LCLQYDERVIVTGSSDSTVRVWDVNTGEVLNTLIHHNEAVLHLRFSN 330
Query: 583 EAAFTCSADCTIRKWDVLTGQCL---QVFRGHTSIVNRILVTNNQLFSSSYDRTARAWSV 753
TCS D +I WD+ + + +V GH + VN + + + S+S DRT + WS
Sbjct: 331 GLMVTCSKDRSIAVWDMASATDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWST 390
Query: 754 DKGQVSREFRGHRNCVLTLAYSAPWDLPGAPCVEEAVAGGLLVTGSTDGTAKVWQVASGC 933
+ R GH+ + L Y L+V+GS+D T ++W + G
Sbjct: 391 STCEFVRTLNGHKRGIACLQY----------------RDRLVVSGSSDNTIRLWDIECGA 434
Query: 934 CHQTLRGHTGAVLCLVLDTPGHTAFTGSTDATIRAW 1041
C + L GH V C+ D +G+ D I+ W
Sbjct: 435 CLRVLEGHEELVRCIRFD--NKRIVSGAYDGKIKVW 468
Score = 74.3 bits (181), Expect = 2e-13
Identities = 37/116 (31%), Positives = 59/116 (50%)
Frame = +1
Query: 406 RVCADHRGGINWLSLSPDGQRLLTGSEDGTARLWSTADGQCCALLQGHESYVTFCQLEDE 585
RV HR +N + D + +++ S D T ++WST+ + L GH+ + Q D
Sbjct: 357 RVLVGHRAAVNVVDF--DDKYIVSASGDRTIKVWSTSTCEFVRTLNGHKRGIACLQYRDR 414
Query: 586 AAFTCSADCTIRKWDVLTGQCLQVFRGHTSIVNRILVTNNQLFSSSYDRTARAWSV 753
+ S+D TIR WD+ G CL+V GH +V I N ++ S +YD + W +
Sbjct: 415 LVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDNKRIVSGAYDGKIKVWDL 470
Score = 67.0 bits (162), Expect = 3e-11
Identities = 52/203 (25%), Positives = 80/203 (39%), Gaps = 12/203 (5%)
Frame = +1
Query: 469 LLTGSEDGTARLWSTADGQCCAL---LQGHESYVTFCQLEDEAAFTCSADCTIRKWDVLT 639
++T S+D + +W A L L GH + V +D+ + S D TI+ W T
Sbjct: 333 MVTCSKDRSIAVWDMASATDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWSTST 392
Query: 640 GQCLQVFRGHTSIVNRILVTNNQLFSSSYDRTARAWSVDKGQVSREFRGHRNCVLTLAYS 819
+ ++ GH + + + + S S D T R W ++ G R GH V + +
Sbjct: 393 CEFVRTLNGHKRGIACLQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFD 452
Query: 820 APWDLPGAPCVEEAVAGGLLVTGSTDGTAKVWQV---------ASGCCHQTLRGHTGAVL 972
+V+G+ DG KVW + AS C +TL H+G V
Sbjct: 453 ----------------NKRIVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVF 496
Query: 973 CLVLDTPGHTAFTGSTDATIRAW 1041
L D + S D TI W
Sbjct: 497 RLQFDE--FQIISSSHDDTILIW 517
>ref|XP_612428.5| PREDICTED: F-box and WD repeat domain containing 11 isoform 1 [Bos
taurus].
Length = 542
Score = 97.1 bits (240), Expect = 2e-20
Identities = 61/216 (28%), Positives = 95/216 (43%), Gaps = 3/216 (1%)
Frame = +1
Query: 403 LRVCADHRGGINWLSLSPDGQRLLTGSEDGTARLWSTADGQCCALLQGHESYVTFCQLED 582
L+V H G + L L D + ++TGS D T R+W G+ L H V + +
Sbjct: 273 LKVLTGHTGSV--LCLQYDERVIVTGSSDSTVRVWDVNTGEVLNTLIHHNEAVLHLRFSN 330
Query: 583 EAAFTCSADCTIRKWDVLTGQCL---QVFRGHTSIVNRILVTNNQLFSSSYDRTARAWSV 753
TCS D +I WD+ + + +V GH + VN + + + S+S DRT + WS
Sbjct: 331 GLMVTCSKDRSIAVWDMASATDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWST 390
Query: 754 DKGQVSREFRGHRNCVLTLAYSAPWDLPGAPCVEEAVAGGLLVTGSTDGTAKVWQVASGC 933
+ R GH+ + L Y L+V+GS+D T ++W + G
Sbjct: 391 STCEFVRTLNGHKRGIACLQY----------------RDRLVVSGSSDNTIRLWDIECGA 434
Query: 934 CHQTLRGHTGAVLCLVLDTPGHTAFTGSTDATIRAW 1041
C + L GH V C+ D +G+ D I+ W
Sbjct: 435 CLRVLEGHEELVRCIRFD--NKRIVSGAYDGKIKVW 468
Score = 74.3 bits (181), Expect = 2e-13
Identities = 37/116 (31%), Positives = 59/116 (50%)
Frame = +1
Query: 406 RVCADHRGGINWLSLSPDGQRLLTGSEDGTARLWSTADGQCCALLQGHESYVTFCQLEDE 585
RV HR +N + D + +++ S D T ++WST+ + L GH+ + Q D
Sbjct: 357 RVLVGHRAAVNVVDF--DDKYIVSASGDRTIKVWSTSTCEFVRTLNGHKRGIACLQYRDR 414
Query: 586 AAFTCSADCTIRKWDVLTGQCLQVFRGHTSIVNRILVTNNQLFSSSYDRTARAWSV 753
+ S+D TIR WD+ G CL+V GH +V I N ++ S +YD + W +
Sbjct: 415 LVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDNKRIVSGAYDGKIKVWDL 470
Score = 67.0 bits (162), Expect = 3e-11
Identities = 52/203 (25%), Positives = 80/203 (39%), Gaps = 12/203 (5%)
Frame = +1
Query: 469 LLTGSEDGTARLWSTADGQCCAL---LQGHESYVTFCQLEDEAAFTCSADCTIRKWDVLT 639
++T S+D + +W A L L GH + V +D+ + S D TI+ W T
Sbjct: 333 MVTCSKDRSIAVWDMASATDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWSTST 392
Query: 640 GQCLQVFRGHTSIVNRILVTNNQLFSSSYDRTARAWSVDKGQVSREFRGHRNCVLTLAYS 819
+ ++ GH + + + + S S D T R W ++ G R GH V + +
Sbjct: 393 CEFVRTLNGHKRGIACLQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFD 452
Query: 820 APWDLPGAPCVEEAVAGGLLVTGSTDGTAKVWQV---------ASGCCHQTLRGHTGAVL 972
+V+G+ DG KVW + AS C +TL H+G V
Sbjct: 453 ----------------NKRIVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVF 496
Query: 973 CLVLDTPGHTAFTGSTDATIRAW 1041
L D + S D TI W
Sbjct: 497 RLQFDE--FQIISSSHDDTILIW 517
Database: RefSeq44_BP.fasta
Posted date: Nov 15, 2010 4:36 PM
Number of letters in database: 18,071,151
Number of sequences in database: 33,615
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33615
Number of Hits to DB: 43,913,670
Number of extensions: 1359195
Number of successful extensions: 10382
Number of sequences better than 1.0e-05: 111
Number of HSP's gapped: 9283
Number of HSP's successfully gapped: 267
Length of query: 347
Length of database: 18,071,151
Length adjustment: 103
Effective length of query: 244
Effective length of database: 14,608,806
Effective search space: 3564548664
Effective search space used: 3564548664
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel44
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20070806C-002574
(1042 letters)
Database: RefSeq44_CP.fasta
33,359 sequences; 18,921,627 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_532767.2| PREDICTED: similar to F-box and WD-40 domain pr... 332 4e-91
Alignment gi|XP_867701.1| PREDICTED: similar to F-box protein FBW7 isofor... 114 1e-25
Alignment gi|XP_532689.2| PREDICTED: similar to F-box protein FBW7 isofor... 112 4e-25
Alignment gi|XP_867720.1| PREDICTED: similar to F-box protein FBW7 isofor... 112 4e-25
Alignment gi|XP_853624.1| PREDICTED: similar to F-box protein FBW7 isofor... 112 4e-25
Alignment gi|XP_537775.2| PREDICTED: similar to platelet-activating facto... 100 3e-21
Alignment gi|XP_854482.1| PREDICTED: similar to platelet-activating facto... 100 3e-21
Alignment gi|XP_868508.1| PREDICTED: similar to platelet-activating facto... 100 3e-21
Alignment gi|XP_866627.1| PREDICTED: similar to F-box/WD-repeat protein 1... 97 3e-20
Alignment gi|XP_852961.1| PREDICTED: similar to F-box and WD-40 domain pr... 97 3e-20
>ref|XP_532767.2| PREDICTED: similar to F-box and WD-40 domain protein 7, archipelago
homolog [Canis familiaris].
Length = 544
Score = 332 bits (851), Expect = 4e-91
Identities = 158/166 (95%), Positives = 159/166 (95%)
Frame = +1
Query: 544 GHESYVTFCQLEDEAAFTCSADCTIRKWDVLTGQCLQVFRGHTSIVNRILVTNNQLFSSS 723
GHESYVTFCQLEDEAAFTCSADCTIRKWDV TGQCLQVFRGHTSIVNRILV NNQLFSSS
Sbjct: 178 GHESYVTFCQLEDEAAFTCSADCTIRKWDVRTGQCLQVFRGHTSIVNRILVANNQLFSSS 237
Query: 724 YDRTARAWSVDKGQVSREFRGHRNCVLTLAYSAPWDLPGAPCVEEAVAGGLLVTGSTDGT 903
YDRTARAWSVDKGQVS+EFRGHRNCVLTLAYSAPWDLPGAPC EE GGLLVTGSTDGT
Sbjct: 238 YDRTARAWSVDKGQVSQEFRGHRNCVLTLAYSAPWDLPGAPCAEE--VGGLLVTGSTDGT 295
Query: 904 AKVWQVASGCCHQTLRGHTGAVLCLVLDTPGHTAFTGSTDATIRAW 1041
AKVWQVASGCCHQTLRGHTGAVLCLVLDTP HTAFTGSTDATIRAW
Sbjct: 296 AKVWQVASGCCHQTLRGHTGAVLCLVLDTPSHTAFTGSTDATIRAW 341
Score = 106 bits (265), Expect = 3e-23
Identities = 49/49 (100%), Positives = 49/49 (100%)
Frame = +1
Query: 397 SALRVCADHRGGINWLSLSPDGQRLLTGSEDGTARLWSTADGQCCALLQ 543
SALRVCADHRGGINWLSLSPDGQRLLTGSEDGTARLWSTADGQCCALLQ
Sbjct: 6 SALRVCADHRGGINWLSLSPDGQRLLTGSEDGTARLWSTADGQCCALLQ 54
>ref|XP_867701.1| PREDICTED: similar to F-box protein FBW7 isoform 2 isoform 3 [Canis
familiaris].
Length = 279
Score = 114 bits (286), Expect = 1e-25
Identities = 64/218 (29%), Positives = 102/218 (46%), Gaps = 27/218 (12%)
Frame = +1
Query: 469 LLTGSEDGTARLWSTADGQCCALLQGHESYVTFCQLEDEAAFTCSADCTIRKWDVLTGQC 648
+++GS D T ++W+ G+C L GH S V L ++ + S D T+R WD+ TGQC
Sbjct: 6 IISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQC 65
Query: 649 LQVFRGHTSIVNRILVTNNQLFSSSYDRTARAWSVDKGQVSREFRGHRNCVLTLAYSA-- 822
L V GH + V + ++ S +YD + W + +GH N V +L +
Sbjct: 66 LHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQFDGIH 125
Query: 823 -----------PWDLPGAPCV-----EEAVAGG------LLVTGSTDGTAKVWQVASGCC 936
WD+ C+ +++ G +LV+G+ D T K+W + +G C
Sbjct: 126 VVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKDNILVSGNADSTVKIWDIKTGQC 185
Query: 937 HQTLRG---HTGAVLCLVLDTPGHTAFTGSTDATIRAW 1041
QTL+G H AV CL + + T S D T++ W
Sbjct: 186 LQTLQGPNKHQSAVTCLQFNK--NFVITSSDDGTVKLW 221
Score = 84.7 bits (208), Expect = 1e-16
Identities = 46/161 (28%), Positives = 77/161 (47%), Gaps = 3/161 (1%)
Frame = +1
Query: 457 DGQRLLTGSEDGTARLWSTADGQCCALLQGHESYVTFCQLEDEAAFTCSADCTIRKWDVL 636
DG+R+++G+ D ++W C LQGH + V Q + + S D +IR WDV
Sbjct: 82 DGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQFDGIHVVSGSLDTSIRVWDVE 141
Query: 637 TGQCLQVFRGHTSIVNRILVTNNQLFSSSYDRTARAWSVDKGQVSREFRG---HRNCVLT 807
TG C+ GH S+ + + + +N L S + D T + W + GQ + +G H++ V
Sbjct: 142 TGNCIHTLTGHQSLTSGMELKDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTC 201
Query: 808 LAYSAPWDLPGAPCVEEAVAGGLLVTGSTDGTAKVWQVASG 930
L ++ ++T S DGT K+W + +G
Sbjct: 202 LQFNK----------------NFVITSSDDGTVKLWDLKTG 226
Score = 80.9 bits (198), Expect = 2e-15
Identities = 48/156 (30%), Positives = 69/156 (44%)
Frame = +1
Query: 574 LEDEAAFTCSADCTIRKWDVLTGQCLQVFRGHTSIVNRILVTNNQLFSSSYDRTARAWSV 753
+ D + S D T++ W+ TG+C+ GHTS V + + ++ S S D T R W +
Sbjct: 1 MRDNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDI 60
Query: 754 DKGQVSREFRGHRNCVLTLAYSAPWDLPGAPCVEEAVAGGLLVTGSTDGTAKVWQVASGC 933
+ GQ GH V + Y G +V+G+ D KVW +
Sbjct: 61 ETGQCLHVLMGHVAAVRCVQYD----------------GRRVVSGAYDFMVKVWDPETET 104
Query: 934 CHQTLRGHTGAVLCLVLDTPGHTAFTGSTDATIRAW 1041
C TL+GHT V L D G +GS D +IR W
Sbjct: 105 CLHTLQGHTNRVYSLQFD--GIHVVSGSLDTSIRVW 138
Score = 78.6 bits (192), Expect = 9e-15
Identities = 40/113 (35%), Positives = 61/113 (53%), Gaps = 3/113 (2%)
Frame = +1
Query: 445 SLSPDGQRLLTGSEDGTARLWSTADGQCCALLQGHESYVTFCQLEDEAAFTCSADCTIRK 624
SL DG +++GS D + R+W G C L GH+S + +L+D + +AD T++
Sbjct: 118 SLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKDNILVSGNADSTVKI 177
Query: 625 WDVLTGQCLQVFRG---HTSIVNRILVTNNQLFSSSYDRTARAWSVDKGQVSR 774
WD+ TGQCLQ +G H S V + N + +SS D T + W + G+ R
Sbjct: 178 WDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGEFIR 230
>ref|XP_532689.2| PREDICTED: similar to F-box protein FBW7 isoform 3 isoform 1 [Canis
familiaris].
Length = 589
Score = 112 bits (281), Expect = 4e-25
Identities = 63/194 (32%), Positives = 91/194 (46%)
Frame = +1
Query: 460 GQRLLTGSEDGTARLWSTADGQCCALLQGHESYVTFCQLEDEAAFTCSADCTIRKWDVLT 639
G R+++GS+D T ++WS G+C L GH V Q+ D + S D T++ W+ T
Sbjct: 273 GNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDNIIISGSTDRTLKVWNAET 332
Query: 640 GQCLQVFRGHTSIVNRILVTNNQLFSSSYDRTARAWSVDKGQVSREFRGHRNCVLTLAYS 819
G+C+ GHTS V + + ++ S S D T R W ++ GQ GH V + Y
Sbjct: 333 GECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYD 392
Query: 820 APWDLPGAPCVEEAVAGGLLVTGSTDGTAKVWQVASGCCHQTLRGHTGAVLCLVLDTPGH 999
G +V+G+ D KVW + C TL+GHT V L D G
Sbjct: 393 ----------------GRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQFD--GI 434
Query: 1000 TAFTGSTDATIRAW 1041
+GS D +IR W
Sbjct: 435 HVVSGSLDTSIRVW 448
Score = 102 bits (253), Expect = 8e-22
Identities = 57/196 (29%), Positives = 90/196 (45%), Gaps = 3/196 (1%)
Frame = +1
Query: 463 QRLLTGSEDGTARLWSTADGQCCALLQGHESYVTFCQLEDEAAFTCSADCTIRKWDVLTG 642
+R+++GS D T R+W GQC +L GH + V Q + + + D ++ WD T
Sbjct: 354 KRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETE 413
Query: 643 QCLQVFRGHTSIVNRILVTNNQLFSSSYDRTARAWSVDKGQVSREFRGHRNCVLTLAYSA 822
CL +GHT+ V + + S S D + R W V+ G GH++ +
Sbjct: 414 TCLHTLQGHTNRVYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGM---- 469
Query: 823 PWDLPGAPCVEEAVAGGLLVTGSTDGTAKVWQVASGCCHQTLRG---HTGAVLCLVLDTP 993
+ +LV+G+ D T K+W + +G C QTL+G H AV CL +
Sbjct: 470 ------------ELKDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNK- 516
Query: 994 GHTAFTGSTDATIRAW 1041
+ T S D T++ W
Sbjct: 517 -NFVITSSDDGTVKLW 531
Score = 84.7 bits (208), Expect = 1e-16
Identities = 46/161 (28%), Positives = 77/161 (47%), Gaps = 3/161 (1%)
Frame = +1
Query: 457 DGQRLLTGSEDGTARLWSTADGQCCALLQGHESYVTFCQLEDEAAFTCSADCTIRKWDVL 636
DG+R+++G+ D ++W C LQGH + V Q + + S D +IR WDV
Sbjct: 392 DGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQFDGIHVVSGSLDTSIRVWDVE 451
Query: 637 TGQCLQVFRGHTSIVNRILVTNNQLFSSSYDRTARAWSVDKGQVSREFRG---HRNCVLT 807
TG C+ GH S+ + + + +N L S + D T + W + GQ + +G H++ V
Sbjct: 452 TGNCIHTLTGHQSLTSGMELKDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTC 511
Query: 808 LAYSAPWDLPGAPCVEEAVAGGLLVTGSTDGTAKVWQVASG 930
L ++ ++T S DGT K+W + +G
Sbjct: 512 LQFNK----------------NFVITSSDDGTVKLWDLKTG 536
Score = 78.6 bits (192), Expect = 9e-15
Identities = 40/113 (35%), Positives = 61/113 (53%), Gaps = 3/113 (2%)
Frame = +1
Query: 445 SLSPDGQRLLTGSEDGTARLWSTADGQCCALLQGHESYVTFCQLEDEAAFTCSADCTIRK 624
SL DG +++GS D + R+W G C L GH+S + +L+D + +AD T++
Sbjct: 428 SLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKDNILVSGNADSTVKI 487
Query: 625 WDVLTGQCLQVFRG---HTSIVNRILVTNNQLFSSSYDRTARAWSVDKGQVSR 774
WD+ TGQCLQ +G H S V + N + +SS D T + W + G+ R
Sbjct: 488 WDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGEFIR 540
Score = 65.9 bits (159), Expect = 6e-11
Identities = 41/131 (31%), Positives = 59/131 (45%), Gaps = 1/131 (0%)
Frame = +1
Query: 652 QVFRGHTS-IVNRILVTNNQLFSSSYDRTARAWSVDKGQVSREFRGHRNCVLTLAYSAPW 828
+V +GH ++ + N++ S S D T + WS G+ R GH V W
Sbjct: 256 KVLKGHDDHVITCLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGV--------W 307
Query: 829 DLPGAPCVEEAVAGGLLVTGSTDGTAKVWQVASGCCHQTLRGHTGAVLCLVLDTPGHTAF 1008
+ ++++GSTD T KVW +G C TL GHT V C+ L
Sbjct: 308 --------SSQMRDNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHE--KRVV 357
Query: 1009 TGSTDATIRAW 1041
+GS DAT+R W
Sbjct: 358 SGSRDATLRVW 368
>ref|XP_867720.1| PREDICTED: similar to F-box protein FBW7 isoform 2 isoform 5 [Canis
familiaris].
Length = 637
Score = 112 bits (281), Expect = 4e-25
Identities = 63/194 (32%), Positives = 91/194 (46%)
Frame = +1
Query: 460 GQRLLTGSEDGTARLWSTADGQCCALLQGHESYVTFCQLEDEAAFTCSADCTIRKWDVLT 639
G R+++GS+D T ++WS G+C L GH V Q+ D + S D T++ W+ T
Sbjct: 321 GNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDNIIISGSTDRTLKVWNAET 380
Query: 640 GQCLQVFRGHTSIVNRILVTNNQLFSSSYDRTARAWSVDKGQVSREFRGHRNCVLTLAYS 819
G+C+ GHTS V + + ++ S S D T R W ++ GQ GH V + Y
Sbjct: 381 GECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYD 440
Query: 820 APWDLPGAPCVEEAVAGGLLVTGSTDGTAKVWQVASGCCHQTLRGHTGAVLCLVLDTPGH 999
G +V+G+ D KVW + C TL+GHT V L D G
Sbjct: 441 ----------------GRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQFD--GI 482
Query: 1000 TAFTGSTDATIRAW 1041
+GS D +IR W
Sbjct: 483 HVVSGSLDTSIRVW 496
Score = 102 bits (253), Expect = 8e-22
Identities = 57/196 (29%), Positives = 90/196 (45%), Gaps = 3/196 (1%)
Frame = +1
Query: 463 QRLLTGSEDGTARLWSTADGQCCALLQGHESYVTFCQLEDEAAFTCSADCTIRKWDVLTG 642
+R+++GS D T R+W GQC +L GH + V Q + + + D ++ WD T
Sbjct: 402 KRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETE 461
Query: 643 QCLQVFRGHTSIVNRILVTNNQLFSSSYDRTARAWSVDKGQVSREFRGHRNCVLTLAYSA 822
CL +GHT+ V + + S S D + R W V+ G GH++ +
Sbjct: 462 TCLHTLQGHTNRVYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGM---- 517
Query: 823 PWDLPGAPCVEEAVAGGLLVTGSTDGTAKVWQVASGCCHQTLRG---HTGAVLCLVLDTP 993
+ +LV+G+ D T K+W + +G C QTL+G H AV CL +
Sbjct: 518 ------------ELKDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNK- 564
Query: 994 GHTAFTGSTDATIRAW 1041
+ T S D T++ W
Sbjct: 565 -NFVITSSDDGTVKLW 579
Score = 84.7 bits (208), Expect = 1e-16
Identities = 46/161 (28%), Positives = 77/161 (47%), Gaps = 3/161 (1%)
Frame = +1
Query: 457 DGQRLLTGSEDGTARLWSTADGQCCALLQGHESYVTFCQLEDEAAFTCSADCTIRKWDVL 636
DG+R+++G+ D ++W C LQGH + V Q + + S D +IR WDV
Sbjct: 440 DGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQFDGIHVVSGSLDTSIRVWDVE 499
Query: 637 TGQCLQVFRGHTSIVNRILVTNNQLFSSSYDRTARAWSVDKGQVSREFRG---HRNCVLT 807
TG C+ GH S+ + + + +N L S + D T + W + GQ + +G H++ V
Sbjct: 500 TGNCIHTLTGHQSLTSGMELKDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTC 559
Query: 808 LAYSAPWDLPGAPCVEEAVAGGLLVTGSTDGTAKVWQVASG 930
L ++ ++T S DGT K+W + +G
Sbjct: 560 LQFNK----------------NFVITSSDDGTVKLWDLKTG 584
Score = 78.6 bits (192), Expect = 9e-15
Identities = 40/113 (35%), Positives = 61/113 (53%), Gaps = 3/113 (2%)
Frame = +1
Query: 445 SLSPDGQRLLTGSEDGTARLWSTADGQCCALLQGHESYVTFCQLEDEAAFTCSADCTIRK 624
SL DG +++GS D + R+W G C L GH+S + +L+D + +AD T++
Sbjct: 476 SLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKDNILVSGNADSTVKI 535
Query: 625 WDVLTGQCLQVFRG---HTSIVNRILVTNNQLFSSSYDRTARAWSVDKGQVSR 774
WD+ TGQCLQ +G H S V + N + +SS D T + W + G+ R
Sbjct: 536 WDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGEFIR 588
Score = 65.9 bits (159), Expect = 6e-11
Identities = 41/131 (31%), Positives = 59/131 (45%), Gaps = 1/131 (0%)
Frame = +1
Query: 652 QVFRGHTS-IVNRILVTNNQLFSSSYDRTARAWSVDKGQVSREFRGHRNCVLTLAYSAPW 828
+V +GH ++ + N++ S S D T + WS G+ R GH V W
Sbjct: 304 KVLKGHDDHVITCLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGV--------W 355
Query: 829 DLPGAPCVEEAVAGGLLVTGSTDGTAKVWQVASGCCHQTLRGHTGAVLCLVLDTPGHTAF 1008
+ ++++GSTD T KVW +G C TL GHT V C+ L
Sbjct: 356 --------SSQMRDNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHE--KRVV 405
Query: 1009 TGSTDATIRAW 1041
+GS DAT+R W
Sbjct: 406 SGSRDATLRVW 416
>ref|XP_853624.1| PREDICTED: similar to F-box protein FBW7 isoform 2 isoform 2 [Canis
familiaris].
Length = 627
Score = 112 bits (281), Expect = 4e-25
Identities = 63/194 (32%), Positives = 91/194 (46%)
Frame = +1
Query: 460 GQRLLTGSEDGTARLWSTADGQCCALLQGHESYVTFCQLEDEAAFTCSADCTIRKWDVLT 639
G R+++GS+D T ++WS G+C L GH V Q+ D + S D T++ W+ T
Sbjct: 311 GNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDNIIISGSTDRTLKVWNAET 370
Query: 640 GQCLQVFRGHTSIVNRILVTNNQLFSSSYDRTARAWSVDKGQVSREFRGHRNCVLTLAYS 819
G+C+ GHTS V + + ++ S S D T R W ++ GQ GH V + Y
Sbjct: 371 GECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYD 430
Query: 820 APWDLPGAPCVEEAVAGGLLVTGSTDGTAKVWQVASGCCHQTLRGHTGAVLCLVLDTPGH 999
G +V+G+ D KVW + C TL+GHT V L D G
Sbjct: 431 ----------------GRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQFD--GI 472
Query: 1000 TAFTGSTDATIRAW 1041
+GS D +IR W
Sbjct: 473 HVVSGSLDTSIRVW 486
Score = 102 bits (253), Expect = 8e-22
Identities = 57/196 (29%), Positives = 90/196 (45%), Gaps = 3/196 (1%)
Frame = +1
Query: 463 QRLLTGSEDGTARLWSTADGQCCALLQGHESYVTFCQLEDEAAFTCSADCTIRKWDVLTG 642
+R+++GS D T R+W GQC +L GH + V Q + + + D ++ WD T
Sbjct: 392 KRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETE 451
Query: 643 QCLQVFRGHTSIVNRILVTNNQLFSSSYDRTARAWSVDKGQVSREFRGHRNCVLTLAYSA 822
CL +GHT+ V + + S S D + R W V+ G GH++ +
Sbjct: 452 TCLHTLQGHTNRVYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGM---- 507
Query: 823 PWDLPGAPCVEEAVAGGLLVTGSTDGTAKVWQVASGCCHQTLRG---HTGAVLCLVLDTP 993
+ +LV+G+ D T K+W + +G C QTL+G H AV CL +
Sbjct: 508 ------------ELKDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNK- 554
Query: 994 GHTAFTGSTDATIRAW 1041
+ T S D T++ W
Sbjct: 555 -NFVITSSDDGTVKLW 569
Score = 84.7 bits (208), Expect = 1e-16
Identities = 46/161 (28%), Positives = 77/161 (47%), Gaps = 3/161 (1%)
Frame = +1
Query: 457 DGQRLLTGSEDGTARLWSTADGQCCALLQGHESYVTFCQLEDEAAFTCSADCTIRKWDVL 636
DG+R+++G+ D ++W C LQGH + V Q + + S D +IR WDV
Sbjct: 430 DGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQFDGIHVVSGSLDTSIRVWDVE 489
Query: 637 TGQCLQVFRGHTSIVNRILVTNNQLFSSSYDRTARAWSVDKGQVSREFRG---HRNCVLT 807
TG C+ GH S+ + + + +N L S + D T + W + GQ + +G H++ V
Sbjct: 490 TGNCIHTLTGHQSLTSGMELKDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTC 549
Query: 808 LAYSAPWDLPGAPCVEEAVAGGLLVTGSTDGTAKVWQVASG 930
L ++ ++T S DGT K+W + +G
Sbjct: 550 LQFNK----------------NFVITSSDDGTVKLWDLKTG 574
Score = 78.6 bits (192), Expect = 9e-15
Identities = 40/113 (35%), Positives = 61/113 (53%), Gaps = 3/113 (2%)
Frame = +1
Query: 445 SLSPDGQRLLTGSEDGTARLWSTADGQCCALLQGHESYVTFCQLEDEAAFTCSADCTIRK 624
SL DG +++GS D + R+W G C L GH+S + +L+D + +AD T++
Sbjct: 466 SLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKDNILVSGNADSTVKI 525
Query: 625 WDVLTGQCLQVFRG---HTSIVNRILVTNNQLFSSSYDRTARAWSVDKGQVSR 774
WD+ TGQCLQ +G H S V + N + +SS D T + W + G+ R
Sbjct: 526 WDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGEFIR 578
Score = 65.9 bits (159), Expect = 6e-11
Identities = 41/131 (31%), Positives = 59/131 (45%), Gaps = 1/131 (0%)
Frame = +1
Query: 652 QVFRGHTS-IVNRILVTNNQLFSSSYDRTARAWSVDKGQVSREFRGHRNCVLTLAYSAPW 828
+V +GH ++ + N++ S S D T + WS G+ R GH V W
Sbjct: 294 KVLKGHDDHVITCLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGV--------W 345
Query: 829 DLPGAPCVEEAVAGGLLVTGSTDGTAKVWQVASGCCHQTLRGHTGAVLCLVLDTPGHTAF 1008
+ ++++GSTD T KVW +G C TL GHT V C+ L
Sbjct: 346 --------SSQMRDNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHE--KRVV 395
Query: 1009 TGSTDATIRAW 1041
+GS DAT+R W
Sbjct: 396 SGSRDATLRVW 406
>ref|XP_537775.2| PREDICTED: similar to platelet-activating factor acetylhydrolase beta
subunit isoform 1 [Canis familiaris].
Length = 372
Score = 100 bits (248), Expect = 3e-21
Identities = 65/224 (29%), Positives = 103/224 (45%), Gaps = 12/224 (5%)
Frame = +1
Query: 406 RVCADHRGGINWLSLSPDGQRLLTGSEDGTARLWSTADGQCCALLQGHESYVTFCQL--E 579
R H + +S G+ L + S D T +LW +C + GH+ V+ +
Sbjct: 106 RTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVAIMPN 165
Query: 580 DEAAFTCSADCTIRKWDVLTGQCLQVFRGHTSIVNRILVTNNQ----LFSSSYDRTARAW 747
+ + S D TI+ W+V TG C++ F GH V +V NQ + S S D+T R W
Sbjct: 166 GDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVR--MVRPNQDGTLIASCSNDQTVRVW 223
Query: 748 SVDKGQVSREFRGHRNCVLTLA------YSAPWDLPGAPCVEEAVAGGLLVTGSTDGTAK 909
V + E R H + V ++ YS+ + G+ + G L++GS D T K
Sbjct: 224 VVATKECKAELREHEHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIK 283
Query: 910 VWQVASGCCHQTLRGHTGAVLCLVLDTPGHTAFTGSTDATIRAW 1041
+W V++G C TL GH V ++ + G + + D T+R W
Sbjct: 284 MWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVW 327
Score = 82.8 bits (203), Expect = 5e-16
Identities = 56/237 (23%), Positives = 91/237 (38%), Gaps = 24/237 (10%)
Frame = +1
Query: 403 LRVCADHRGGINWLSLSPDGQRLLTGSEDGTARLWSTADGQCCALLQGHESYVTFCQLED 582
+R H ++ +++ P+G +++ S D T ++W G C GH +V +
Sbjct: 147 IRTMHGHDHNVSSVAIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQ 206
Query: 583 EAAF--TCSADCTIRKWDVLTGQCLQVFRGHTSIVNRIL------------VTNNQ---- 708
+ +CS D T+R W V T +C R H +V I T ++
Sbjct: 207 DGTLIASCSNDQTVRVWVVATKECKAELREHEHVVECISWAPESSYSSISEATGSETKKS 266
Query: 709 ------LFSSSYDRTARAWSVDKGQVSREFRGHRNCVLTLAYSAPWDLPGAPCVEEAVAG 870
L S S D+T + W V G GH N V + + + G
Sbjct: 267 GKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHS--------------GG 312
Query: 871 GLLVTGSTDGTAKVWQVASGCCHQTLRGHTGAVLCLVLDTPGHTAFTGSTDATIRAW 1041
+++ + D T +VW + C +TL H V L TGS D T++ W
Sbjct: 313 KFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVW 369
Score = 70.1 bits (170), Expect = 3e-12
Identities = 52/192 (27%), Positives = 79/192 (41%), Gaps = 26/192 (13%)
Frame = +1
Query: 421 HRGGINWLSLSPDGQRLLTGSEDGTARLWSTADGQCCALLQGHESYVTFCQLEDEAAFTC 600
HR + + + DG + + S D T R+W A +C A L+ HE V E++++
Sbjct: 195 HREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHEHVVECISWAPESSYSS 254
Query: 601 ----------------------SADCTIRKWDVLTGQCLQVFRGHTSIVNRILVTNNQLF 714
S D TI+ WDV TG CL GH + V +L + F
Sbjct: 255 ISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKF 314
Query: 715 --SSSYDRTARAWSVDKGQVSREFRGHRNCVLTLAY--SAPWDLPGAPCVEEAVAGGLLV 882
S + D+T R W + + H + V +L + +AP+ +V
Sbjct: 315 ILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPY----------------VV 358
Query: 883 TGSTDGTAKVWQ 918
TGS D T KVW+
Sbjct: 359 TGSVDQTVKVWE 370
Score = 65.9 bits (159), Expect = 6e-11
Identities = 52/172 (30%), Positives = 73/172 (42%), Gaps = 4/172 (2%)
Frame = +1
Query: 538 LQGHESYVTFCQLEDEAAFTCSA--DCTIRKWDVLTGQCLQVFRGHTSIVNRILV--TNN 705
L GH S VT + SA D TI+ WD TG + +GHT V I +
Sbjct: 66 LSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGK 125
Query: 706 QLFSSSYDRTARAWSVDKGQVSREFRGHRNCVLTLAYSAPWDLPGAPCVEEAVAGGLLVT 885
L S S D T + W + R GH + V ++A +P G +V+
Sbjct: 126 LLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVAI-----MPN---------GDHIVS 171
Query: 886 GSTDGTAKVWQVASGCCHQTLRGHTGAVLCLVLDTPGHTAFTGSTDATIRAW 1041
S D T K+W+V +G C +T GH V + + G + S D T+R W
Sbjct: 172 ASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVW 223
>ref|XP_854482.1| PREDICTED: similar to platelet-activating factor acetylhydrolase beta
subunit isoform 2 [Canis familiaris].
Length = 410
Score = 100 bits (248), Expect = 3e-21
Identities = 65/224 (29%), Positives = 103/224 (45%), Gaps = 12/224 (5%)
Frame = +1
Query: 406 RVCADHRGGINWLSLSPDGQRLLTGSEDGTARLWSTADGQCCALLQGHESYVTFCQL--E 579
R H + +S G+ L + S D T +LW +C + GH+ V+ +
Sbjct: 144 RTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVAIMPN 203
Query: 580 DEAAFTCSADCTIRKWDVLTGQCLQVFRGHTSIVNRILVTNNQ----LFSSSYDRTARAW 747
+ + S D TI+ W+V TG C++ F GH V +V NQ + S S D+T R W
Sbjct: 204 GDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVR--MVRPNQDGTLIASCSNDQTVRVW 261
Query: 748 SVDKGQVSREFRGHRNCVLTLA------YSAPWDLPGAPCVEEAVAGGLLVTGSTDGTAK 909
V + E R H + V ++ YS+ + G+ + G L++GS D T K
Sbjct: 262 VVATKECKAELREHEHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIK 321
Query: 910 VWQVASGCCHQTLRGHTGAVLCLVLDTPGHTAFTGSTDATIRAW 1041
+W V++G C TL GH V ++ + G + + D T+R W
Sbjct: 322 MWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVW 365
Score = 82.8 bits (203), Expect = 5e-16
Identities = 56/237 (23%), Positives = 91/237 (38%), Gaps = 24/237 (10%)
Frame = +1
Query: 403 LRVCADHRGGINWLSLSPDGQRLLTGSEDGTARLWSTADGQCCALLQGHESYVTFCQLED 582
+R H ++ +++ P+G +++ S D T ++W G C GH +V +
Sbjct: 185 IRTMHGHDHNVSSVAIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQ 244
Query: 583 EAAF--TCSADCTIRKWDVLTGQCLQVFRGHTSIVNRIL------------VTNNQ---- 708
+ +CS D T+R W V T +C R H +V I T ++
Sbjct: 245 DGTLIASCSNDQTVRVWVVATKECKAELREHEHVVECISWAPESSYSSISEATGSETKKS 304
Query: 709 ------LFSSSYDRTARAWSVDKGQVSREFRGHRNCVLTLAYSAPWDLPGAPCVEEAVAG 870
L S S D+T + W V G GH N V + + + G
Sbjct: 305 GKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHS--------------GG 350
Query: 871 GLLVTGSTDGTAKVWQVASGCCHQTLRGHTGAVLCLVLDTPGHTAFTGSTDATIRAW 1041
+++ + D T +VW + C +TL H V L TGS D T++ W
Sbjct: 351 KFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVW 407
Score = 70.1 bits (170), Expect = 3e-12
Identities = 52/192 (27%), Positives = 79/192 (41%), Gaps = 26/192 (13%)
Frame = +1
Query: 421 HRGGINWLSLSPDGQRLLTGSEDGTARLWSTADGQCCALLQGHESYVTFCQLEDEAAFTC 600
HR + + + DG + + S D T R+W A +C A L+ HE V E++++
Sbjct: 233 HREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHEHVVECISWAPESSYSS 292
Query: 601 ----------------------SADCTIRKWDVLTGQCLQVFRGHTSIVNRILVTNNQLF 714
S D TI+ WDV TG CL GH + V +L + F
Sbjct: 293 ISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKF 352
Query: 715 --SSSYDRTARAWSVDKGQVSREFRGHRNCVLTLAY--SAPWDLPGAPCVEEAVAGGLLV 882
S + D+T R W + + H + V +L + +AP+ +V
Sbjct: 353 ILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPY----------------VV 396
Query: 883 TGSTDGTAKVWQ 918
TGS D T KVW+
Sbjct: 397 TGSVDQTVKVWE 408
Score = 65.9 bits (159), Expect = 6e-11
Identities = 52/172 (30%), Positives = 73/172 (42%), Gaps = 4/172 (2%)
Frame = +1
Query: 538 LQGHESYVTFCQLEDEAAFTCSA--DCTIRKWDVLTGQCLQVFRGHTSIVNRILV--TNN 705
L GH S VT + SA D TI+ WD TG + +GHT V I +
Sbjct: 104 LSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGK 163
Query: 706 QLFSSSYDRTARAWSVDKGQVSREFRGHRNCVLTLAYSAPWDLPGAPCVEEAVAGGLLVT 885
L S S D T + W + R GH + V ++A +P G +V+
Sbjct: 164 LLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVAI-----MPN---------GDHIVS 209
Query: 886 GSTDGTAKVWQVASGCCHQTLRGHTGAVLCLVLDTPGHTAFTGSTDATIRAW 1041
S D T K+W+V +G C +T GH V + + G + S D T+R W
Sbjct: 210 ASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVW 261
>ref|XP_868508.1| PREDICTED: similar to platelet-activating factor acetylhydrolase beta
subunit isoform 3 [Canis familiaris].
Length = 345
Score = 100 bits (248), Expect = 3e-21
Identities = 65/224 (29%), Positives = 103/224 (45%), Gaps = 12/224 (5%)
Frame = +1
Query: 406 RVCADHRGGINWLSLSPDGQRLLTGSEDGTARLWSTADGQCCALLQGHESYVTFCQL--E 579
R H + +S G+ L + S D T +LW +C + GH+ V+ +
Sbjct: 79 RTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVAIMPN 138
Query: 580 DEAAFTCSADCTIRKWDVLTGQCLQVFRGHTSIVNRILVTNNQ----LFSSSYDRTARAW 747
+ + S D TI+ W+V TG C++ F GH V +V NQ + S S D+T R W
Sbjct: 139 GDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVR--MVRPNQDGTLIASCSNDQTVRVW 196
Query: 748 SVDKGQVSREFRGHRNCVLTLA------YSAPWDLPGAPCVEEAVAGGLLVTGSTDGTAK 909
V + E R H + V ++ YS+ + G+ + G L++GS D T K
Sbjct: 197 VVATKECKAELREHEHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIK 256
Query: 910 VWQVASGCCHQTLRGHTGAVLCLVLDTPGHTAFTGSTDATIRAW 1041
+W V++G C TL GH V ++ + G + + D T+R W
Sbjct: 257 MWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVW 300
Score = 82.8 bits (203), Expect = 5e-16
Identities = 56/237 (23%), Positives = 91/237 (38%), Gaps = 24/237 (10%)
Frame = +1
Query: 403 LRVCADHRGGINWLSLSPDGQRLLTGSEDGTARLWSTADGQCCALLQGHESYVTFCQLED 582
+R H ++ +++ P+G +++ S D T ++W G C GH +V +
Sbjct: 120 IRTMHGHDHNVSSVAIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQ 179
Query: 583 EAAF--TCSADCTIRKWDVLTGQCLQVFRGHTSIVNRIL------------VTNNQ---- 708
+ +CS D T+R W V T +C R H +V I T ++
Sbjct: 180 DGTLIASCSNDQTVRVWVVATKECKAELREHEHVVECISWAPESSYSSISEATGSETKKS 239
Query: 709 ------LFSSSYDRTARAWSVDKGQVSREFRGHRNCVLTLAYSAPWDLPGAPCVEEAVAG 870
L S S D+T + W V G GH N V + + + G
Sbjct: 240 GKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHS--------------GG 285
Query: 871 GLLVTGSTDGTAKVWQVASGCCHQTLRGHTGAVLCLVLDTPGHTAFTGSTDATIRAW 1041
+++ + D T +VW + C +TL H V L TGS D T++ W
Sbjct: 286 KFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVW 342
Score = 70.1 bits (170), Expect = 3e-12
Identities = 52/192 (27%), Positives = 79/192 (41%), Gaps = 26/192 (13%)
Frame = +1
Query: 421 HRGGINWLSLSPDGQRLLTGSEDGTARLWSTADGQCCALLQGHESYVTFCQLEDEAAFTC 600
HR + + + DG + + S D T R+W A +C A L+ HE V E++++
Sbjct: 168 HREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHEHVVECISWAPESSYSS 227
Query: 601 ----------------------SADCTIRKWDVLTGQCLQVFRGHTSIVNRILVTNNQLF 714
S D TI+ WDV TG CL GH + V +L + F
Sbjct: 228 ISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKF 287
Query: 715 --SSSYDRTARAWSVDKGQVSREFRGHRNCVLTLAY--SAPWDLPGAPCVEEAVAGGLLV 882
S + D+T R W + + H + V +L + +AP+ +V
Sbjct: 288 ILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPY----------------VV 331
Query: 883 TGSTDGTAKVWQ 918
TGS D T KVW+
Sbjct: 332 TGSVDQTVKVWE 343
Score = 65.9 bits (159), Expect = 6e-11
Identities = 52/172 (30%), Positives = 73/172 (42%), Gaps = 4/172 (2%)
Frame = +1
Query: 538 LQGHESYVTFCQLEDEAAFTCSA--DCTIRKWDVLTGQCLQVFRGHTSIVNRILV--TNN 705
L GH S VT + SA D TI+ WD TG + +GHT V I +
Sbjct: 39 LSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGK 98
Query: 706 QLFSSSYDRTARAWSVDKGQVSREFRGHRNCVLTLAYSAPWDLPGAPCVEEAVAGGLLVT 885
L S S D T + W + R GH + V ++A +P G +V+
Sbjct: 99 LLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVAI-----MPN---------GDHIVS 144
Query: 886 GSTDGTAKVWQVASGCCHQTLRGHTGAVLCLVLDTPGHTAFTGSTDATIRAW 1041
S D T K+W+V +G C +T GH V + + G + S D T+R W
Sbjct: 145 ASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVW 196
>ref|XP_866627.1| PREDICTED: similar to F-box/WD-repeat protein 11 (F-box/WD-repeat
protein 1B) (F-box and WD-repeats protein beta-TrCP2)
isoform 8 [Canis familiaris].
Length = 542
Score = 97.1 bits (240), Expect = 3e-20
Identities = 61/216 (28%), Positives = 95/216 (43%), Gaps = 3/216 (1%)
Frame = +1
Query: 403 LRVCADHRGGINWLSLSPDGQRLLTGSEDGTARLWSTADGQCCALLQGHESYVTFCQLED 582
L+V H G + L L D + ++TGS D T R+W G+ L H V + +
Sbjct: 273 LKVLTGHTGSV--LCLQYDERVIVTGSSDSTVRVWDVNTGEVLNTLIHHNEAVLHLRFSN 330
Query: 583 EAAFTCSADCTIRKWDVLTGQCL---QVFRGHTSIVNRILVTNNQLFSSSYDRTARAWSV 753
TCS D +I WD+ + + +V GH + VN + + + S+S DRT + WS
Sbjct: 331 GLMVTCSKDRSIAVWDMASATDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWST 390
Query: 754 DKGQVSREFRGHRNCVLTLAYSAPWDLPGAPCVEEAVAGGLLVTGSTDGTAKVWQVASGC 933
+ R GH+ + L Y L+V+GS+D T ++W + G
Sbjct: 391 STCEFVRTLNGHKRGIACLQY----------------RDRLVVSGSSDNTIRLWDIECGA 434
Query: 934 CHQTLRGHTGAVLCLVLDTPGHTAFTGSTDATIRAW 1041
C + L GH V C+ D +G+ D I+ W
Sbjct: 435 CLRVLEGHEELVRCIRFD--NKRIVSGAYDGKIKVW 468
Score = 74.3 bits (181), Expect = 2e-13
Identities = 37/116 (31%), Positives = 59/116 (50%)
Frame = +1
Query: 406 RVCADHRGGINWLSLSPDGQRLLTGSEDGTARLWSTADGQCCALLQGHESYVTFCQLEDE 585
RV HR +N + D + +++ S D T ++WST+ + L GH+ + Q D
Sbjct: 357 RVLVGHRAAVNVVDF--DDKYIVSASGDRTIKVWSTSTCEFVRTLNGHKRGIACLQYRDR 414
Query: 586 AAFTCSADCTIRKWDVLTGQCLQVFRGHTSIVNRILVTNNQLFSSSYDRTARAWSV 753
+ S+D TIR WD+ G CL+V GH +V I N ++ S +YD + W +
Sbjct: 415 LVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDNKRIVSGAYDGKIKVWDL 470
Score = 67.0 bits (162), Expect = 3e-11
Identities = 52/203 (25%), Positives = 80/203 (39%), Gaps = 12/203 (5%)
Frame = +1
Query: 469 LLTGSEDGTARLWSTADGQCCAL---LQGHESYVTFCQLEDEAAFTCSADCTIRKWDVLT 639
++T S+D + +W A L L GH + V +D+ + S D TI+ W T
Sbjct: 333 MVTCSKDRSIAVWDMASATDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWSTST 392
Query: 640 GQCLQVFRGHTSIVNRILVTNNQLFSSSYDRTARAWSVDKGQVSREFRGHRNCVLTLAYS 819
+ ++ GH + + + + S S D T R W ++ G R GH V + +
Sbjct: 393 CEFVRTLNGHKRGIACLQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFD 452
Query: 820 APWDLPGAPCVEEAVAGGLLVTGSTDGTAKVWQV---------ASGCCHQTLRGHTGAVL 972
+V+G+ DG KVW + AS C +TL H+G V
Sbjct: 453 ----------------NKRIVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVF 496
Query: 973 CLVLDTPGHTAFTGSTDATIRAW 1041
L D + S D TI W
Sbjct: 497 RLQFDE--FQIISSSHDDTILIW 517
>ref|XP_852961.1| PREDICTED: similar to F-box and WD-40 domain protein 11 isoform 2
[Canis familiaris].
Length = 563
Score = 97.1 bits (240), Expect = 3e-20
Identities = 61/216 (28%), Positives = 95/216 (43%), Gaps = 3/216 (1%)
Frame = +1
Query: 403 LRVCADHRGGINWLSLSPDGQRLLTGSEDGTARLWSTADGQCCALLQGHESYVTFCQLED 582
L+V H G + L L D + ++TGS D T R+W G+ L H V + +
Sbjct: 294 LKVLTGHTGSV--LCLQYDERVIVTGSSDSTVRVWDVNTGEVLNTLIHHNEAVLHLRFSN 351
Query: 583 EAAFTCSADCTIRKWDVLTGQCL---QVFRGHTSIVNRILVTNNQLFSSSYDRTARAWSV 753
TCS D +I WD+ + + +V GH + VN + + + S+S DRT + WS
Sbjct: 352 GLMVTCSKDRSIAVWDMASATDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWST 411
Query: 754 DKGQVSREFRGHRNCVLTLAYSAPWDLPGAPCVEEAVAGGLLVTGSTDGTAKVWQVASGC 933
+ R GH+ + L Y L+V+GS+D T ++W + G
Sbjct: 412 STCEFVRTLNGHKRGIACLQY----------------RDRLVVSGSSDNTIRLWDIECGA 455
Query: 934 CHQTLRGHTGAVLCLVLDTPGHTAFTGSTDATIRAW 1041
C + L GH V C+ D +G+ D I+ W
Sbjct: 456 CLRVLEGHEELVRCIRFD--NKRIVSGAYDGKIKVW 489
Score = 74.3 bits (181), Expect = 2e-13
Identities = 37/116 (31%), Positives = 59/116 (50%)
Frame = +1
Query: 406 RVCADHRGGINWLSLSPDGQRLLTGSEDGTARLWSTADGQCCALLQGHESYVTFCQLEDE 585
RV HR +N + D + +++ S D T ++WST+ + L GH+ + Q D
Sbjct: 378 RVLVGHRAAVNVVDF--DDKYIVSASGDRTIKVWSTSTCEFVRTLNGHKRGIACLQYRDR 435
Query: 586 AAFTCSADCTIRKWDVLTGQCLQVFRGHTSIVNRILVTNNQLFSSSYDRTARAWSV 753
+ S+D TIR WD+ G CL+V GH +V I N ++ S +YD + W +
Sbjct: 436 LVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDNKRIVSGAYDGKIKVWDL 491
Score = 67.0 bits (162), Expect = 3e-11
Identities = 52/203 (25%), Positives = 80/203 (39%), Gaps = 12/203 (5%)
Frame = +1
Query: 469 LLTGSEDGTARLWSTADGQCCAL---LQGHESYVTFCQLEDEAAFTCSADCTIRKWDVLT 639
++T S+D + +W A L L GH + V +D+ + S D TI+ W T
Sbjct: 354 MVTCSKDRSIAVWDMASATDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWSTST 413
Query: 640 GQCLQVFRGHTSIVNRILVTNNQLFSSSYDRTARAWSVDKGQVSREFRGHRNCVLTLAYS 819
+ ++ GH + + + + S S D T R W ++ G R GH V + +
Sbjct: 414 CEFVRTLNGHKRGIACLQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFD 473
Query: 820 APWDLPGAPCVEEAVAGGLLVTGSTDGTAKVWQV---------ASGCCHQTLRGHTGAVL 972
+V+G+ DG KVW + AS C +TL H+G V
Sbjct: 474 ----------------NKRIVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVF 517
Query: 973 CLVLDTPGHTAFTGSTDATIRAW 1041
L D + S D TI W
Sbjct: 518 RLQFDE--FQIISSSHDDTILIW 538
Database: RefSeq44_CP.fasta
Posted date: Nov 15, 2010 4:36 PM
Number of letters in database: 18,921,627
Number of sequences in database: 33,359
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33359
Number of Hits to DB: 44,818,042
Number of extensions: 1366199
Number of successful extensions: 10828
Number of sequences better than 1.0e-05: 127
Number of HSP's gapped: 9560
Number of HSP's successfully gapped: 323
Length of query: 347
Length of database: 18,921,627
Length adjustment: 104
Effective length of query: 243
Effective length of database: 15,452,291
Effective search space: 3754906713
Effective search space used: 3754906713
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel44
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20070806C-002574
(1042 letters)
Database: RefSeq44_HP.fasta
33,950 sequences; 18,324,212 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_938026.2| WD repeat-containing protein 86 [Homo sapiens]. 439 e-123
Alignment gi|NP_001038941.1| WD repeat-containing protein 38 [Homo sapien... 129 6e-30
Alignment gi|NP_060785.2| F-box/WD repeat-containing protein 7 isoform 2 ... 112 4e-25
Alignment gi|NP_001013433.1| F-box/WD repeat-containing protein 7 isoform... 112 4e-25
Alignment gi|NP_361014.1| F-box/WD repeat-containing protein 7 isoform 1 ... 112 4e-25
Alignment gi|NP_008882.2| transcription initiation factor TFIID subunit 5... 109 5e-24
Alignment gi|NP_438172.1| WD repeat-containing protein 5 [Homo sapiens]. 100 2e-21
Alignment gi|NP_060058.1| WD repeat-containing protein 5 [Homo sapiens]. 100 2e-21
Alignment gi|NP_000421.1| platelet-activating factor acetylhydrolase IB s... 100 3e-21
Alignment gi|NP_849143.1| WD repeat-containing protein 69 [Homo sapiens]. 99 8e-21
>ref|NP_938026.2| WD repeat-containing protein 86 [Homo sapiens].
Length = 376
Score = 439 bits (1130), Expect = e-123
Identities = 206/215 (95%), Positives = 209/215 (97%)
Frame = +1
Query: 397 SALRVCADHRGGINWLSLSPDGQRLLTGSEDGTARLWSTADGQCCALLQGHESYVTFCQL 576
SALRVCADHRGGINWLSLSPDGQRLLTGSEDGTARLWSTADGQCCALLQGHESYVTFCQL
Sbjct: 6 SALRVCADHRGGINWLSLSPDGQRLLTGSEDGTARLWSTADGQCCALLQGHESYVTFCQL 65
Query: 577 EDEAAFTCSADCTIRKWDVLTGQCLQVFRGHTSIVNRILVTNNQLFSSSYDRTARAWSVD 756
EDEAAFTCSADCTIR+WDVLTGQCLQV+RGHTSIVNRILV NNQLFSSSYDRTAR WSVD
Sbjct: 66 EDEAAFTCSADCTIRRWDVLTGQCLQVYRGHTSIVNRILVANNQLFSSSYDRTARVWSVD 125
Query: 757 KGQVSREFRGHRNCVLTLAYSAPWDLPGAPCVEEAVAGGLLVTGSTDGTAKVWQVASGCC 936
KGQ+SREFRGHRNCVLTLAYSAPWDLP PC EEA AGGLLVTGSTDGTAKVWQVASGCC
Sbjct: 126 KGQMSREFRGHRNCVLTLAYSAPWDLPSTPCAEEAAAGGLLVTGSTDGTAKVWQVASGCC 185
Query: 937 HQTLRGHTGAVLCLVLDTPGHTAFTGSTDATIRAW 1041
HQTLRGHTGAVLCLVLDTPGHTAFTGSTDATIRAW
Sbjct: 186 HQTLRGHTGAVLCLVLDTPGHTAFTGSTDATIRAW 220
Score = 123 bits (309), Expect = 2e-28
Identities = 73/196 (37%), Positives = 95/196 (48%), Gaps = 2/196 (1%)
Frame = +1
Query: 460 GQRLLTGSEDGTARLWSTADGQCCALLQGHESYVTFCQLED--EAAFTCSADCTIRKWDV 633
G L+TGS DGTA++W A G C L+GH V L+ AFT S D TIR WD+
Sbjct: 163 GGLLVTGSTDGTAKVWQVASGCCHQTLRGHTGAVLCLVLDTPGHTAFTGSTDATIRAWDI 222
Query: 634 LTGQCLQVFRGHTSIVNRILVTNNQLFSSSYDRTARAWSVDKGQVSREFRGHRNCVLTLA 813
L+G+ L+VFR H V + + N ++S S DRT + W D G+ R F HR V L
Sbjct: 223 LSGEQLRVFREHRGSVICLELVNRLVYSGSADRTVKCWLADTGECVRTFTAHRRNVSALK 282
Query: 814 YSAPWDLPGAPCVEEAVAGGLLVTGSTDGTAKVWQVASGCCHQTLRGHTGAVLCLVLDTP 993
Y A G L TGS D A+ + SG + RGHT + C +
Sbjct: 283 YHA----------------GTLFTGSGDACARAFDAQSGELRRVFRGHTFIINC--IQVH 324
Query: 994 GHTAFTGSTDATIRAW 1041
G +T S D +R W
Sbjct: 325 GQVLYTASHDGALRLW 340
Score = 83.6 bits (205), Expect = 3e-16
Identities = 51/170 (30%), Positives = 74/170 (43%), Gaps = 3/170 (1%)
Frame = +1
Query: 421 HRGGINWLSLSPDGQRLLTGSEDGTARLWSTADGQCCALLQGHESYVTFCQLEDEAAFTC 600
H G + L L G TGS D T R W G+ + + H V +L + ++
Sbjct: 192 HTGAVLCLVLDTPGHTAFTGSTDATIRAWDILSGEQLRVFREHRGSVICLELVNRLVYSG 251
Query: 601 SADCTIRKWDVLTGQCLQVFRGHTSIVNRILVTNNQLFSSSYDRTARAWSVDKGQVSREF 780
SAD T++ W TG+C++ F H V+ + LF+ S D ARA+ G++ R F
Sbjct: 252 SADRTVKCWLADTGECVRTFTAHRRNVSALKYHAGTLFTGSGDACARAFDAQSGELRRVF 311
Query: 781 RGHR---NCVLTLAYSAPWDLPGAPCVEEAVAGGLLVTGSTDGTAKVWQV 921
RGH NC+ V G +L T S DG ++W V
Sbjct: 312 RGHTFIINCI-------------------QVHGQVLYTASHDGALRLWDV 342
>ref|NP_001038941.1| WD repeat-containing protein 38 [Homo sapiens].
Length = 314
Score = 129 bits (323), Expect = 6e-30
Identities = 79/214 (36%), Positives = 101/214 (47%), Gaps = 7/214 (3%)
Frame = +1
Query: 421 HRGGINWLSLSPDGQRLLTGSEDGTARLWSTADGQCCALLQGHESYVTFCQLEDEAAFTC 600
H G +N + SPDGQ LLTGSEDG W T GQ L GH V FC+ +
Sbjct: 20 HGGEVNSSAFSPDGQMLLTGSEDGCVYGWETRSGQLLWRLGGHTGPVKFCRFSPDGHLFA 79
Query: 601 SA--DCTIRKWDVLTGQCLQVFRGHTSIVNRILVT--NNQLFSSSYDRTARAWSVDKGQV 768
SA DCT+R WDV +CL+V +GH V + + + QL S +D+ W V GQ+
Sbjct: 80 SASCDCTVRLWDVARAKCLRVLKGHQRSVETVSFSPDSRQLASGGWDKRVMLWDVQSGQM 139
Query: 769 SREFRGHRNCVLTLAYSAPWDLPGAPCVEEAVAGGLLVTGSTDGTAKVW---QVASGCCH 939
R GHR+ + + +S P C L TGS D T +W V H
Sbjct: 140 LRLLVGHRDSIQSSDFS-----PTVNC---------LATGSWDSTVHIWDLRMVTPAVSH 185
Query: 940 QTLRGHTGAVLCLVLDTPGHTAFTGSTDATIRAW 1041
Q L GH+ + CL G A +GS D TI W
Sbjct: 186 QALEGHSANISCLCYSASGLLA-SGSWDKTIHIW 218
Score = 71.6 bits (174), Expect = 1e-12
Identities = 56/217 (25%), Positives = 87/217 (40%), Gaps = 6/217 (2%)
Frame = +1
Query: 403 LRVCADHRGGINWLSLSPDGQRLLTGSEDGTARLWSTADGQCCALLQGHESYVTFCQLED 582
LRV H+ + +S SPD ++L +G D LW GQ LL GH +
Sbjct: 98 LRVLKGHQRSVETVSFSPDSRQLASGGWDKRVMLWDVQSGQMLRLLVGHRDSIQSSDFSP 157
Query: 583 --EAAFTCSADCTIRKWD---VLTGQCLQVFRGHTSIVNRILVTNNQLFSS-SYDRTARA 744
T S D T+ WD V Q GH++ ++ + + + L +S S+D+T
Sbjct: 158 TVNCLATGSWDSTVHIWDLRMVTPAVSHQALEGHSANISCLCYSASGLLASGSWDKTIHI 217
Query: 745 WSVDKGQVSREFRGHRNCVLTLAYSAPWDLPGAPCVEEAVAGGLLVTGSTDGTAKVWQVA 924
W + + +GH V ++A+S P +L L + KVW
Sbjct: 218 WKPTTSSLLIQLKGHVTWVKSIAFS-PDEL-------------WLASAGYSRMVKVWDCN 263
Query: 925 SGCCHQTLRGHTGAVLCLVLDTPGHTAFTGSTDATIR 1035
+G C +TL+G G +G+ D T R
Sbjct: 264 TGKCLETLKGVLDVAHTCAFTPDGKILVSGAADQTRR 300
>ref|NP_060785.2| F-box/WD repeat-containing protein 7 isoform 2 [Homo sapiens].
Length = 627
Score = 112 bits (281), Expect = 4e-25
Identities = 63/194 (32%), Positives = 91/194 (46%)
Frame = +1
Query: 460 GQRLLTGSEDGTARLWSTADGQCCALLQGHESYVTFCQLEDEAAFTCSADCTIRKWDVLT 639
G R+++GS+D T ++WS G+C L GH V Q+ D + S D T++ W+ T
Sbjct: 311 GNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDNIIISGSTDRTLKVWNAET 370
Query: 640 GQCLQVFRGHTSIVNRILVTNNQLFSSSYDRTARAWSVDKGQVSREFRGHRNCVLTLAYS 819
G+C+ GHTS V + + ++ S S D T R W ++ GQ GH V + Y
Sbjct: 371 GECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYD 430
Query: 820 APWDLPGAPCVEEAVAGGLLVTGSTDGTAKVWQVASGCCHQTLRGHTGAVLCLVLDTPGH 999
G +V+G+ D KVW + C TL+GHT V L D G
Sbjct: 431 ----------------GRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQFD--GI 472
Query: 1000 TAFTGSTDATIRAW 1041
+GS D +IR W
Sbjct: 473 HVVSGSLDTSIRVW 486
Score = 102 bits (253), Expect = 8e-22
Identities = 57/196 (29%), Positives = 90/196 (45%), Gaps = 3/196 (1%)
Frame = +1
Query: 463 QRLLTGSEDGTARLWSTADGQCCALLQGHESYVTFCQLEDEAAFTCSADCTIRKWDVLTG 642
+R+++GS D T R+W GQC +L GH + V Q + + + D ++ WD T
Sbjct: 392 KRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETE 451
Query: 643 QCLQVFRGHTSIVNRILVTNNQLFSSSYDRTARAWSVDKGQVSREFRGHRNCVLTLAYSA 822
CL +GHT+ V + + S S D + R W V+ G GH++ +
Sbjct: 452 TCLHTLQGHTNRVYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGM---- 507
Query: 823 PWDLPGAPCVEEAVAGGLLVTGSTDGTAKVWQVASGCCHQTLRG---HTGAVLCLVLDTP 993
+ +LV+G+ D T K+W + +G C QTL+G H AV CL +
Sbjct: 508 ------------ELKDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNK- 554
Query: 994 GHTAFTGSTDATIRAW 1041
+ T S D T++ W
Sbjct: 555 -NFVITSSDDGTVKLW 569
Score = 84.7 bits (208), Expect = 1e-16
Identities = 46/161 (28%), Positives = 77/161 (47%), Gaps = 3/161 (1%)
Frame = +1
Query: 457 DGQRLLTGSEDGTARLWSTADGQCCALLQGHESYVTFCQLEDEAAFTCSADCTIRKWDVL 636
DG+R+++G+ D ++W C LQGH + V Q + + S D +IR WDV
Sbjct: 430 DGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQFDGIHVVSGSLDTSIRVWDVE 489
Query: 637 TGQCLQVFRGHTSIVNRILVTNNQLFSSSYDRTARAWSVDKGQVSREFRG---HRNCVLT 807
TG C+ GH S+ + + + +N L S + D T + W + GQ + +G H++ V
Sbjct: 490 TGNCIHTLTGHQSLTSGMELKDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTC 549
Query: 808 LAYSAPWDLPGAPCVEEAVAGGLLVTGSTDGTAKVWQVASG 930
L ++ ++T S DGT K+W + +G
Sbjct: 550 LQFNK----------------NFVITSSDDGTVKLWDLKTG 574
Score = 78.6 bits (192), Expect = 9e-15
Identities = 40/113 (35%), Positives = 61/113 (53%), Gaps = 3/113 (2%)
Frame = +1
Query: 445 SLSPDGQRLLTGSEDGTARLWSTADGQCCALLQGHESYVTFCQLEDEAAFTCSADCTIRK 624
SL DG +++GS D + R+W G C L GH+S + +L+D + +AD T++
Sbjct: 466 SLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKDNILVSGNADSTVKI 525
Query: 625 WDVLTGQCLQVFRG---HTSIVNRILVTNNQLFSSSYDRTARAWSVDKGQVSR 774
WD+ TGQCLQ +G H S V + N + +SS D T + W + G+ R
Sbjct: 526 WDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGEFIR 578
Score = 65.9 bits (159), Expect = 6e-11
Identities = 41/131 (31%), Positives = 59/131 (45%), Gaps = 1/131 (0%)
Frame = +1
Query: 652 QVFRGHTS-IVNRILVTNNQLFSSSYDRTARAWSVDKGQVSREFRGHRNCVLTLAYSAPW 828
+V +GH ++ + N++ S S D T + WS G+ R GH V W
Sbjct: 294 KVLKGHDDHVITCLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGV--------W 345
Query: 829 DLPGAPCVEEAVAGGLLVTGSTDGTAKVWQVASGCCHQTLRGHTGAVLCLVLDTPGHTAF 1008
+ ++++GSTD T KVW +G C TL GHT V C+ L
Sbjct: 346 --------SSQMRDNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHE--KRVV 395
Query: 1009 TGSTDATIRAW 1041
+GS DAT+R W
Sbjct: 396 SGSRDATLRVW 406
>ref|NP_001013433.1| F-box/WD repeat-containing protein 7 isoform 3 [Homo sapiens].
Length = 589
Score = 112 bits (281), Expect = 4e-25
Identities = 63/194 (32%), Positives = 91/194 (46%)
Frame = +1
Query: 460 GQRLLTGSEDGTARLWSTADGQCCALLQGHESYVTFCQLEDEAAFTCSADCTIRKWDVLT 639
G R+++GS+D T ++WS G+C L GH V Q+ D + S D T++ W+ T
Sbjct: 273 GNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDNIIISGSTDRTLKVWNAET 332
Query: 640 GQCLQVFRGHTSIVNRILVTNNQLFSSSYDRTARAWSVDKGQVSREFRGHRNCVLTLAYS 819
G+C+ GHTS V + + ++ S S D T R W ++ GQ GH V + Y
Sbjct: 333 GECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYD 392
Query: 820 APWDLPGAPCVEEAVAGGLLVTGSTDGTAKVWQVASGCCHQTLRGHTGAVLCLVLDTPGH 999
G +V+G+ D KVW + C TL+GHT V L D G
Sbjct: 393 ----------------GRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQFD--GI 434
Query: 1000 TAFTGSTDATIRAW 1041
+GS D +IR W
Sbjct: 435 HVVSGSLDTSIRVW 448
Score = 102 bits (253), Expect = 8e-22
Identities = 57/196 (29%), Positives = 90/196 (45%), Gaps = 3/196 (1%)
Frame = +1
Query: 463 QRLLTGSEDGTARLWSTADGQCCALLQGHESYVTFCQLEDEAAFTCSADCTIRKWDVLTG 642
+R+++GS D T R+W GQC +L GH + V Q + + + D ++ WD T
Sbjct: 354 KRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETE 413
Query: 643 QCLQVFRGHTSIVNRILVTNNQLFSSSYDRTARAWSVDKGQVSREFRGHRNCVLTLAYSA 822
CL +GHT+ V + + S S D + R W V+ G GH++ +
Sbjct: 414 TCLHTLQGHTNRVYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGM---- 469
Query: 823 PWDLPGAPCVEEAVAGGLLVTGSTDGTAKVWQVASGCCHQTLRG---HTGAVLCLVLDTP 993
+ +LV+G+ D T K+W + +G C QTL+G H AV CL +
Sbjct: 470 ------------ELKDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNK- 516
Query: 994 GHTAFTGSTDATIRAW 1041
+ T S D T++ W
Sbjct: 517 -NFVITSSDDGTVKLW 531
Score = 84.7 bits (208), Expect = 1e-16
Identities = 46/161 (28%), Positives = 77/161 (47%), Gaps = 3/161 (1%)
Frame = +1
Query: 457 DGQRLLTGSEDGTARLWSTADGQCCALLQGHESYVTFCQLEDEAAFTCSADCTIRKWDVL 636
DG+R+++G+ D ++W C LQGH + V Q + + S D +IR WDV
Sbjct: 392 DGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQFDGIHVVSGSLDTSIRVWDVE 451
Query: 637 TGQCLQVFRGHTSIVNRILVTNNQLFSSSYDRTARAWSVDKGQVSREFRG---HRNCVLT 807
TG C+ GH S+ + + + +N L S + D T + W + GQ + +G H++ V
Sbjct: 452 TGNCIHTLTGHQSLTSGMELKDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTC 511
Query: 808 LAYSAPWDLPGAPCVEEAVAGGLLVTGSTDGTAKVWQVASG 930
L ++ ++T S DGT K+W + +G
Sbjct: 512 LQFNK----------------NFVITSSDDGTVKLWDLKTG 536
Score = 78.6 bits (192), Expect = 9e-15
Identities = 40/113 (35%), Positives = 61/113 (53%), Gaps = 3/113 (2%)
Frame = +1
Query: 445 SLSPDGQRLLTGSEDGTARLWSTADGQCCALLQGHESYVTFCQLEDEAAFTCSADCTIRK 624
SL DG +++GS D + R+W G C L GH+S + +L+D + +AD T++
Sbjct: 428 SLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKDNILVSGNADSTVKI 487
Query: 625 WDVLTGQCLQVFRG---HTSIVNRILVTNNQLFSSSYDRTARAWSVDKGQVSR 774
WD+ TGQCLQ +G H S V + N + +SS D T + W + G+ R
Sbjct: 488 WDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGEFIR 540
Score = 65.9 bits (159), Expect = 6e-11
Identities = 41/131 (31%), Positives = 59/131 (45%), Gaps = 1/131 (0%)
Frame = +1
Query: 652 QVFRGHTS-IVNRILVTNNQLFSSSYDRTARAWSVDKGQVSREFRGHRNCVLTLAYSAPW 828
+V +GH ++ + N++ S S D T + WS G+ R GH V W
Sbjct: 256 KVLKGHDDHVITCLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGV--------W 307
Query: 829 DLPGAPCVEEAVAGGLLVTGSTDGTAKVWQVASGCCHQTLRGHTGAVLCLVLDTPGHTAF 1008
+ ++++GSTD T KVW +G C TL GHT V C+ L
Sbjct: 308 --------SSQMRDNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHE--KRVV 357
Query: 1009 TGSTDATIRAW 1041
+GS DAT+R W
Sbjct: 358 SGSRDATLRVW 368
>ref|NP_361014.1| F-box/WD repeat-containing protein 7 isoform 1 [Homo sapiens].
Length = 707
Score = 112 bits (281), Expect = 4e-25
Identities = 63/194 (32%), Positives = 91/194 (46%)
Frame = +1
Query: 460 GQRLLTGSEDGTARLWSTADGQCCALLQGHESYVTFCQLEDEAAFTCSADCTIRKWDVLT 639
G R+++GS+D T ++WS G+C L GH V Q+ D + S D T++ W+ T
Sbjct: 391 GNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDNIIISGSTDRTLKVWNAET 450
Query: 640 GQCLQVFRGHTSIVNRILVTNNQLFSSSYDRTARAWSVDKGQVSREFRGHRNCVLTLAYS 819
G+C+ GHTS V + + ++ S S D T R W ++ GQ GH V + Y
Sbjct: 451 GECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYD 510
Query: 820 APWDLPGAPCVEEAVAGGLLVTGSTDGTAKVWQVASGCCHQTLRGHTGAVLCLVLDTPGH 999
G +V+G+ D KVW + C TL+GHT V L D G
Sbjct: 511 ----------------GRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQFD--GI 552
Query: 1000 TAFTGSTDATIRAW 1041
+GS D +IR W
Sbjct: 553 HVVSGSLDTSIRVW 566
Score = 102 bits (253), Expect = 8e-22
Identities = 57/196 (29%), Positives = 90/196 (45%), Gaps = 3/196 (1%)
Frame = +1
Query: 463 QRLLTGSEDGTARLWSTADGQCCALLQGHESYVTFCQLEDEAAFTCSADCTIRKWDVLTG 642
+R+++GS D T R+W GQC +L GH + V Q + + + D ++ WD T
Sbjct: 472 KRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETE 531
Query: 643 QCLQVFRGHTSIVNRILVTNNQLFSSSYDRTARAWSVDKGQVSREFRGHRNCVLTLAYSA 822
CL +GHT+ V + + S S D + R W V+ G GH++ +
Sbjct: 532 TCLHTLQGHTNRVYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGM---- 587
Query: 823 PWDLPGAPCVEEAVAGGLLVTGSTDGTAKVWQVASGCCHQTLRG---HTGAVLCLVLDTP 993
+ +LV+G+ D T K+W + +G C QTL+G H AV CL +
Sbjct: 588 ------------ELKDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNK- 634
Query: 994 GHTAFTGSTDATIRAW 1041
+ T S D T++ W
Sbjct: 635 -NFVITSSDDGTVKLW 649
Score = 84.7 bits (208), Expect = 1e-16
Identities = 46/161 (28%), Positives = 77/161 (47%), Gaps = 3/161 (1%)
Frame = +1
Query: 457 DGQRLLTGSEDGTARLWSTADGQCCALLQGHESYVTFCQLEDEAAFTCSADCTIRKWDVL 636
DG+R+++G+ D ++W C LQGH + V Q + + S D +IR WDV
Sbjct: 510 DGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQFDGIHVVSGSLDTSIRVWDVE 569
Query: 637 TGQCLQVFRGHTSIVNRILVTNNQLFSSSYDRTARAWSVDKGQVSREFRG---HRNCVLT 807
TG C+ GH S+ + + + +N L S + D T + W + GQ + +G H++ V
Sbjct: 570 TGNCIHTLTGHQSLTSGMELKDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTC 629
Query: 808 LAYSAPWDLPGAPCVEEAVAGGLLVTGSTDGTAKVWQVASG 930
L ++ ++T S DGT K+W + +G
Sbjct: 630 LQFNK----------------NFVITSSDDGTVKLWDLKTG 654
Score = 78.6 bits (192), Expect = 9e-15
Identities = 40/113 (35%), Positives = 61/113 (53%), Gaps = 3/113 (2%)
Frame = +1
Query: 445 SLSPDGQRLLTGSEDGTARLWSTADGQCCALLQGHESYVTFCQLEDEAAFTCSADCTIRK 624
SL DG +++GS D + R+W G C L GH+S + +L+D + +AD T++
Sbjct: 546 SLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKDNILVSGNADSTVKI 605
Query: 625 WDVLTGQCLQVFRG---HTSIVNRILVTNNQLFSSSYDRTARAWSVDKGQVSR 774
WD+ TGQCLQ +G H S V + N + +SS D T + W + G+ R
Sbjct: 606 WDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGEFIR 658
Score = 65.9 bits (159), Expect = 6e-11
Identities = 41/131 (31%), Positives = 59/131 (45%), Gaps = 1/131 (0%)
Frame = +1
Query: 652 QVFRGHTS-IVNRILVTNNQLFSSSYDRTARAWSVDKGQVSREFRGHRNCVLTLAYSAPW 828
+V +GH ++ + N++ S S D T + WS G+ R GH V W
Sbjct: 374 KVLKGHDDHVITCLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGV--------W 425
Query: 829 DLPGAPCVEEAVAGGLLVTGSTDGTAKVWQVASGCCHQTLRGHTGAVLCLVLDTPGHTAF 1008
+ ++++GSTD T KVW +G C TL GHT V C+ L
Sbjct: 426 --------SSQMRDNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHE--KRVV 475
Query: 1009 TGSTDATIRAW 1041
+GS DAT+R W
Sbjct: 476 SGSRDATLRVW 486
>ref|NP_008882.2| transcription initiation factor TFIID subunit 5 [Homo sapiens].
Length = 800
Score = 109 bits (272), Expect = 5e-24
Identities = 73/219 (33%), Positives = 95/219 (43%), Gaps = 4/219 (1%)
Frame = +1
Query: 397 SALRVCADHRGGINWLSLSPDGQRLLTGSEDGTARLWSTADGQCCALLQGHESYVTFCQL 576
S L++ H G + S SPD LL+ SEDGT RLWS C +GH V Q
Sbjct: 534 SELKILYGHSGPVYGASFSPDRNYLLSSSEDGTVRLWSLQTFTCLVGYKGHNYPVWDTQF 593
Query: 577 EDEAAFTCSA--DCTIRKWDVLTGQCLQVFRGHTSIVN--RILVTNNQLFSSSYDRTARA 744
+ S D R W Q L++F GH + VN R +N + + S DRT R
Sbjct: 594 SPYGYYFVSGGHDRVARLWATDHYQPLRIFAGHLADVNCTRFHPNSNYVATGSADRTVRL 653
Query: 745 WSVDKGQVSREFRGHRNCVLTLAYSAPWDLPGAPCVEEAVAGGLLVTGSTDGTAKVWQVA 924
W V G R F GH+ + +L +S G L TG+TDG +W +
Sbjct: 654 WDVLNGNCVRIFTGHKGPIHSLTFSPN--------------GRFLATGATDGRVLLWDIG 699
Query: 925 SGCCHQTLRGHTGAVLCLVLDTPGHTAFTGSTDATIRAW 1041
G L+GHT V L G +GS D T+R W
Sbjct: 700 HGLMVGELKGHTDTVCSLRFSRDGEILASGSMDNTVRLW 738
>ref|NP_438172.1| WD repeat-containing protein 5 [Homo sapiens].
Length = 334
Score = 100 bits (249), Expect = 2e-21
Identities = 62/219 (28%), Positives = 101/219 (46%), Gaps = 7/219 (3%)
Frame = +1
Query: 406 RVCADHRGGINWLSLSPDGQRLLTGSEDGTARLWSTADGQCCALLQGHESYVTFCQLEDE 585
+ + H+ GI+ ++ S D L++ S+D T ++W + G+C L+GH +YV C +
Sbjct: 81 KTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQ 140
Query: 586 AAFTCSA--DCTIRKWDVLTGQCLQVFRGHTSIVNRILVT--NNQLFSSSYDRTARAWSV 753
+ S D ++R WDV TG+CL+ H+ V+ + + + SSSYD R W
Sbjct: 141 SNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT 200
Query: 754 DKGQVSREFRGHRNCVLTLAYSAPWDLPGAPCVEEAVAGGLLVTGSTDGTAKVWQVASGC 933
GQ C+ TL D P V+ + G ++ + D T K+W + G
Sbjct: 201 ASGQ----------CLKTLIDD---DNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGK 247
Query: 934 CHQTLRGHTGAVLCLVLD---TPGHTAFTGSTDATIRAW 1041
C +T GH C+ + T G +GS D + W
Sbjct: 248 CLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIW 286
Score = 88.2 bits (217), Expect = 1e-17
Identities = 55/214 (25%), Positives = 98/214 (45%), Gaps = 5/214 (2%)
Frame = +1
Query: 415 ADHRGGINWLSLSPDGQRLLTGSEDGTARLWSTADGQCCALLQGHESYVTFCQLEDEAAF 594
A H ++ + SP+G+ L + S D ++W DG+ + GH+ ++ ++
Sbjct: 42 AGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNL 101
Query: 595 TCSA--DCTIRKWDVLTGQCLQVFRGHTSIV--NRILVTNNQLFSSSYDRTARAWSVDKG 762
SA D T++ WDV +G+CL+ +GH++ V +N + S S+D + R W V G
Sbjct: 102 LVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTG 161
Query: 763 QVSREFRGHRNCVLTLAYSAPWDLPGAPCVEEAVAGGLLVTGSTDGTAKVWQVASGCCHQ 942
+ + H + V + ++ G L+V+ S DG ++W ASG C +
Sbjct: 162 KCLKTLPAHSDPVSAVHFNRD--------------GSLIVSSSYDGLCRIWDTASGQCLK 207
Query: 943 TLRGHTGAVLCLVLDTP-GHTAFTGSTDATIRAW 1041
TL + V +P G + D T++ W
Sbjct: 208 TLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW 241
Score = 69.7 bits (169), Expect = 4e-12
Identities = 51/224 (22%), Positives = 91/224 (40%), Gaps = 11/224 (4%)
Frame = +1
Query: 403 LRVCADHRGGINWLSLSPDGQRLLTGSEDGTARLWSTADGQCCALLQGHESYVTFCQLED 582
L+ H + + +P +++GS D + R+W G+C L H V+
Sbjct: 122 LKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNR 181
Query: 583 EAAFTCSA--DCTIRKWDVLTGQCLQVF----RGHTSIVNRILVTNNQLFSSSYDRTARA 744
+ + S+ D R WD +GQCL+ S V + + +++ D T +
Sbjct: 182 DGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFV-KFSPNGKYILAATLDNTLKL 240
Query: 745 WSVDKGQVSREFRGHRN---CVLTLAYSAPWDLPGAPCVEEAVAGGLLVTGSTDGTAKVW 915
W KG+ + + GH+N C+ A + + G G +V+GS D +W
Sbjct: 241 WDYSKGKCLKTYTGHKNEKYCIF-----ANFSVTG---------GKWIVSGSEDNLVYIW 286
Query: 916 QVASGCCHQTLRGHTGAVLCLVLDTPGHTAFTGS--TDATIRAW 1041
+ + Q L+GHT V+ + + + D TI+ W
Sbjct: 287 NLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 330
Score = 66.6 bits (161), Expect = 4e-11
Identities = 43/180 (23%), Positives = 78/180 (43%), Gaps = 8/180 (4%)
Frame = +1
Query: 403 LRVCADHRGGINWLSLSPDGQRLLTGSEDGTARLWSTADGQCC-ALLQGHESYVTFCQLE 579
L+ H ++ + + DG +++ S DG R+W TA GQC L+ V+F +
Sbjct: 164 LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFS 223
Query: 580 DEAAFTCSA--DCTIRKWDVLTGQCLQVFRGHTS-----IVNRILVTNNQLFSSSYDRTA 738
+ +A D T++ WD G+CL+ + GH + N + + S S D
Sbjct: 224 PNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLV 283
Query: 739 RAWSVDKGQVSREFRGHRNCVLTLAYSAPWDLPGAPCVEEAVAGGLLVTGSTDGTAKVWQ 918
W++ ++ ++ +GH + V++ A E +A L D T K+W+
Sbjct: 284 YIWNLQTKEIVQKLQGHTDVVISTACHP---------TENIIASAAL---ENDKTIKLWK 331
>ref|NP_060058.1| WD repeat-containing protein 5 [Homo sapiens].
Length = 334
Score = 100 bits (249), Expect = 2e-21
Identities = 62/219 (28%), Positives = 101/219 (46%), Gaps = 7/219 (3%)
Frame = +1
Query: 406 RVCADHRGGINWLSLSPDGQRLLTGSEDGTARLWSTADGQCCALLQGHESYVTFCQLEDE 585
+ + H+ GI+ ++ S D L++ S+D T ++W + G+C L+GH +YV C +
Sbjct: 81 KTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQ 140
Query: 586 AAFTCSA--DCTIRKWDVLTGQCLQVFRGHTSIVNRILVT--NNQLFSSSYDRTARAWSV 753
+ S D ++R WDV TG+CL+ H+ V+ + + + SSSYD R W
Sbjct: 141 SNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT 200
Query: 754 DKGQVSREFRGHRNCVLTLAYSAPWDLPGAPCVEEAVAGGLLVTGSTDGTAKVWQVASGC 933
GQ C+ TL D P V+ + G ++ + D T K+W + G
Sbjct: 201 ASGQ----------CLKTLIDD---DNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGK 247
Query: 934 CHQTLRGHTGAVLCLVLD---TPGHTAFTGSTDATIRAW 1041
C +T GH C+ + T G +GS D + W
Sbjct: 248 CLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIW 286
Score = 88.2 bits (217), Expect = 1e-17
Identities = 55/214 (25%), Positives = 98/214 (45%), Gaps = 5/214 (2%)
Frame = +1
Query: 415 ADHRGGINWLSLSPDGQRLLTGSEDGTARLWSTADGQCCALLQGHESYVTFCQLEDEAAF 594
A H ++ + SP+G+ L + S D ++W DG+ + GH+ ++ ++
Sbjct: 42 AGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNL 101
Query: 595 TCSA--DCTIRKWDVLTGQCLQVFRGHTSIV--NRILVTNNQLFSSSYDRTARAWSVDKG 762
SA D T++ WDV +G+CL+ +GH++ V +N + S S+D + R W V G
Sbjct: 102 LVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTG 161
Query: 763 QVSREFRGHRNCVLTLAYSAPWDLPGAPCVEEAVAGGLLVTGSTDGTAKVWQVASGCCHQ 942
+ + H + V + ++ G L+V+ S DG ++W ASG C +
Sbjct: 162 KCLKTLPAHSDPVSAVHFNRD--------------GSLIVSSSYDGLCRIWDTASGQCLK 207
Query: 943 TLRGHTGAVLCLVLDTP-GHTAFTGSTDATIRAW 1041
TL + V +P G + D T++ W
Sbjct: 208 TLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW 241
Score = 69.7 bits (169), Expect = 4e-12
Identities = 51/224 (22%), Positives = 91/224 (40%), Gaps = 11/224 (4%)
Frame = +1
Query: 403 LRVCADHRGGINWLSLSPDGQRLLTGSEDGTARLWSTADGQCCALLQGHESYVTFCQLED 582
L+ H + + +P +++GS D + R+W G+C L H V+
Sbjct: 122 LKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNR 181
Query: 583 EAAFTCSA--DCTIRKWDVLTGQCLQVF----RGHTSIVNRILVTNNQLFSSSYDRTARA 744
+ + S+ D R WD +GQCL+ S V + + +++ D T +
Sbjct: 182 DGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFV-KFSPNGKYILAATLDNTLKL 240
Query: 745 WSVDKGQVSREFRGHRN---CVLTLAYSAPWDLPGAPCVEEAVAGGLLVTGSTDGTAKVW 915
W KG+ + + GH+N C+ A + + G G +V+GS D +W
Sbjct: 241 WDYSKGKCLKTYTGHKNEKYCIF-----ANFSVTG---------GKWIVSGSEDNLVYIW 286
Query: 916 QVASGCCHQTLRGHTGAVLCLVLDTPGHTAFTGS--TDATIRAW 1041
+ + Q L+GHT V+ + + + D TI+ W
Sbjct: 287 NLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 330
Score = 66.6 bits (161), Expect = 4e-11
Identities = 43/180 (23%), Positives = 78/180 (43%), Gaps = 8/180 (4%)
Frame = +1
Query: 403 LRVCADHRGGINWLSLSPDGQRLLTGSEDGTARLWSTADGQCC-ALLQGHESYVTFCQLE 579
L+ H ++ + + DG +++ S DG R+W TA GQC L+ V+F +
Sbjct: 164 LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFS 223
Query: 580 DEAAFTCSA--DCTIRKWDVLTGQCLQVFRGHTS-----IVNRILVTNNQLFSSSYDRTA 738
+ +A D T++ WD G+CL+ + GH + N + + S S D
Sbjct: 224 PNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLV 283
Query: 739 RAWSVDKGQVSREFRGHRNCVLTLAYSAPWDLPGAPCVEEAVAGGLLVTGSTDGTAKVWQ 918
W++ ++ ++ +GH + V++ A E +A L D T K+W+
Sbjct: 284 YIWNLQTKEIVQKLQGHTDVVISTACHP---------TENIIASAAL---ENDKTIKLWK 331
>ref|NP_000421.1| platelet-activating factor acetylhydrolase IB subunit alpha [Homo
sapiens].
Length = 410
Score = 100 bits (248), Expect = 3e-21
Identities = 65/224 (29%), Positives = 103/224 (45%), Gaps = 12/224 (5%)
Frame = +1
Query: 406 RVCADHRGGINWLSLSPDGQRLLTGSEDGTARLWSTADGQCCALLQGHESYVTFCQL--E 579
R H + +S G+ L + S D T +LW +C + GH+ V+ +
Sbjct: 144 RTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVAIMPN 203
Query: 580 DEAAFTCSADCTIRKWDVLTGQCLQVFRGHTSIVNRILVTNNQ----LFSSSYDRTARAW 747
+ + S D TI+ W+V TG C++ F GH V +V NQ + S S D+T R W
Sbjct: 204 GDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVR--MVRPNQDGTLIASCSNDQTVRVW 261
Query: 748 SVDKGQVSREFRGHRNCVLTLA------YSAPWDLPGAPCVEEAVAGGLLVTGSTDGTAK 909
V + E R H + V ++ YS+ + G+ + G L++GS D T K
Sbjct: 262 VVATKECKAELREHEHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIK 321
Query: 910 VWQVASGCCHQTLRGHTGAVLCLVLDTPGHTAFTGSTDATIRAW 1041
+W V++G C TL GH V ++ + G + + D T+R W
Sbjct: 322 MWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVW 365
Score = 82.8 bits (203), Expect = 5e-16
Identities = 56/237 (23%), Positives = 91/237 (38%), Gaps = 24/237 (10%)
Frame = +1
Query: 403 LRVCADHRGGINWLSLSPDGQRLLTGSEDGTARLWSTADGQCCALLQGHESYVTFCQLED 582
+R H ++ +++ P+G +++ S D T ++W G C GH +V +
Sbjct: 185 IRTMHGHDHNVSSVAIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQ 244
Query: 583 EAAF--TCSADCTIRKWDVLTGQCLQVFRGHTSIVNRIL------------VTNNQ---- 708
+ +CS D T+R W V T +C R H +V I T ++
Sbjct: 245 DGTLIASCSNDQTVRVWVVATKECKAELREHEHVVECISWAPESSYSSISEATGSETKKS 304
Query: 709 ------LFSSSYDRTARAWSVDKGQVSREFRGHRNCVLTLAYSAPWDLPGAPCVEEAVAG 870
L S S D+T + W V G GH N V + + + G
Sbjct: 305 GKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHS--------------GG 350
Query: 871 GLLVTGSTDGTAKVWQVASGCCHQTLRGHTGAVLCLVLDTPGHTAFTGSTDATIRAW 1041
+++ + D T +VW + C +TL H V L TGS D T++ W
Sbjct: 351 KFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVW 407
Score = 70.1 bits (170), Expect = 3e-12
Identities = 52/192 (27%), Positives = 79/192 (41%), Gaps = 26/192 (13%)
Frame = +1
Query: 421 HRGGINWLSLSPDGQRLLTGSEDGTARLWSTADGQCCALLQGHESYVTFCQLEDEAAFTC 600
HR + + + DG + + S D T R+W A +C A L+ HE V E++++
Sbjct: 233 HREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHEHVVECISWAPESSYSS 292
Query: 601 ----------------------SADCTIRKWDVLTGQCLQVFRGHTSIVNRILVTNNQLF 714
S D TI+ WDV TG CL GH + V +L + F
Sbjct: 293 ISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKF 352
Query: 715 --SSSYDRTARAWSVDKGQVSREFRGHRNCVLTLAY--SAPWDLPGAPCVEEAVAGGLLV 882
S + D+T R W + + H + V +L + +AP+ +V
Sbjct: 353 ILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPY----------------VV 396
Query: 883 TGSTDGTAKVWQ 918
TGS D T KVW+
Sbjct: 397 TGSVDQTVKVWE 408
Score = 65.9 bits (159), Expect = 6e-11
Identities = 52/172 (30%), Positives = 73/172 (42%), Gaps = 4/172 (2%)
Frame = +1
Query: 538 LQGHESYVTFCQLEDEAAFTCSA--DCTIRKWDVLTGQCLQVFRGHTSIVNRILV--TNN 705
L GH S VT + SA D TI+ WD TG + +GHT V I +
Sbjct: 104 LSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGK 163
Query: 706 QLFSSSYDRTARAWSVDKGQVSREFRGHRNCVLTLAYSAPWDLPGAPCVEEAVAGGLLVT 885
L S S D T + W + R GH + V ++A +P G +V+
Sbjct: 164 LLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVAI-----MPN---------GDHIVS 209
Query: 886 GSTDGTAKVWQVASGCCHQTLRGHTGAVLCLVLDTPGHTAFTGSTDATIRAW 1041
S D T K+W+V +G C +T GH V + + G + S D T+R W
Sbjct: 210 ASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVW 261
>ref|NP_849143.1| WD repeat-containing protein 69 [Homo sapiens].
Length = 415
Score = 98.6 bits (244), Expect = 8e-21
Identities = 68/231 (29%), Positives = 100/231 (43%), Gaps = 33/231 (14%)
Frame = +1
Query: 442 LSLSPDGQRLLTGSEDGTARLWSTADGQCCALLQGHESYV---TFCQLEDEAAFTCSADC 612
++L+ G +TGS D T +LW TA G+ L+GH + V F + T S D
Sbjct: 98 VALNKSGSCFITGSYDRTCKLWDTASGEELNTLEGHRNVVYAIAFNNPYGDKIATGSFDK 157
Query: 613 TIRKWDVLTGQCLQVFRGHTSIVNRILVT--NNQLFSSSYDRTARAWSVDKGQVSREFRG 786
T + W V TG+C FRGHT+ + + + + + S D TA+ W + G+ RG
Sbjct: 158 TCKLWSVETGKCYHTFRGHTAEIVCLSFNPQSTLVATGSMDTTAKLWDIQNGEEVYTLRG 217
Query: 787 HRNCVLTLAYSAP---------------WDLPG--------APCVEEAVAG-----GLLV 882
H +++L+++ WD C E + A L++
Sbjct: 218 HSAEIISLSFNTSGDRIITGSFDHTVVVWDADTGRKVNILIGHCAEISSASFNWDCSLIL 277
Query: 883 TGSTDGTAKVWQVASGCCHQTLRGHTGAVLCLVLDTPGHTAFTGSTDATIR 1035
TGS D T K+W +G C TL GH +L D G T S D T R
Sbjct: 278 TGSMDKTCKLWDATNGKCVATLTGHDDEILDSCFDYTGKLIATASADGTAR 328
Score = 94.0 bits (232), Expect = 2e-19
Identities = 59/211 (27%), Positives = 94/211 (44%), Gaps = 4/211 (1%)
Frame = +1
Query: 421 HRGGINWLSLSPDGQRLLTGSEDGTARLWSTADGQCCALLQGHESYVTFCQLEDEAAF-- 594
H I LS + G R++TGS D T +W G+ +L GH + ++ + +
Sbjct: 218 HSAEIISLSFNTSGDRIITGSFDHTVVVWDADTGRKVNILIGHCAEISSASFNWDCSLIL 277
Query: 595 TCSADCTIRKWDVLTGQCLQVFRGHTSIV--NRILVTNNQLFSSSYDRTARAWSVDKGQV 768
T S D T + WD G+C+ GH + + T + ++S D TAR +S +
Sbjct: 278 TGSMDKTCKLWDATNGKCVATLTGHDDEILDSCFDYTGKLIATASADGTARIFSAATRKC 337
Query: 769 SREFRGHRNCVLTLAYSAPWDLPGAPCVEEAVAGGLLVTGSTDGTAKVWQVASGCCHQTL 948
+ GH + ++++ G L+TGS+D TA++W +G C Q L
Sbjct: 338 IAKLEGHEGEISKISFNPQ--------------GNHLLTGSSDKTARIWDAQTGQCLQVL 383
Query: 949 RGHTGAVLCLVLDTPGHTAFTGSTDATIRAW 1041
GHT + + G+ TGS D T R W
Sbjct: 384 EGHTDEIFSCAFNYKGNIVITGSKDNTCRIW 414
Score = 90.1 bits (222), Expect = 3e-18
Identities = 57/211 (27%), Positives = 92/211 (43%), Gaps = 4/211 (1%)
Frame = +1
Query: 421 HRGGINWLSLSPDGQRLLTGSEDGTARLWSTADGQCCALLQGHESYVTFCQL--EDEAAF 594
H I LS +P + TGS D TA+LW +G+ L+GH + + +
Sbjct: 176 HTAEIVCLSFNPQSTLVATGSMDTTAKLWDIQNGEEVYTLRGHSAEIISLSFNTSGDRII 235
Query: 595 TCSADCTIRKWDVLTGQCLQVFRGHTSIVNRILVT--NNQLFSSSYDRTARAWSVDKGQV 768
T S D T+ WD TG+ + + GH + ++ + + + S D+T + W G+
Sbjct: 236 TGSFDHTVVVWDADTGRKVNILIGHCAEISSASFNWDCSLILTGSMDKTCKLWDATNGKC 295
Query: 769 SREFRGHRNCVLTLAYSAPWDLPGAPCVEEAVAGGLLVTGSTDGTAKVWQVASGCCHQTL 948
GH + +L + G L+ T S DGTA+++ A+ C L
Sbjct: 296 VATLTGHDDEILDSCFD--------------YTGKLIATASADGTARIFSAATRKCIAKL 341
Query: 949 RGHTGAVLCLVLDTPGHTAFTGSTDATIRAW 1041
GH G + + + G+ TGS+D T R W
Sbjct: 342 EGHEGEISKISFNPQGNHLLTGSSDKTARIW 372
Score = 88.2 bits (217), Expect = 1e-17
Identities = 49/152 (32%), Positives = 77/152 (50%), Gaps = 3/152 (1%)
Frame = +1
Query: 595 TCSADCTIRKWDVLTGQCLQVFRGHTSIVNRILVTN---NQLFSSSYDRTARAWSVDKGQ 765
T S D T + WD +G+ L GH ++V I N +++ + S+D+T + WSV+ G+
Sbjct: 109 TGSYDRTCKLWDTASGEELNTLEGHRNVVYAIAFNNPYGDKIATGSFDKTCKLWSVETGK 168
Query: 766 VSREFRGHRNCVLTLAYSAPWDLPGAPCVEEAVAGGLLVTGSTDGTAKVWQVASGCCHQT 945
FRGH ++ L+++ L+ TGS D TAK+W + +G T
Sbjct: 169 CYHTFRGHTAEIVCLSFNPQ--------------STLVATGSMDTTAKLWDIQNGEEVYT 214
Query: 946 LRGHTGAVLCLVLDTPGHTAFTGSTDATIRAW 1041
LRGH+ ++ L +T G TGS D T+ W
Sbjct: 215 LRGHSAEIISLSFNTSGDRIITGSFDHTVVVW 246
Score = 84.0 bits (206), Expect = 2e-16
Identities = 49/176 (27%), Positives = 81/176 (46%), Gaps = 4/176 (2%)
Frame = +1
Query: 403 LRVCADHRGGINWLSLSPDGQRLLTGSEDGTARLWSTADGQCCALLQGHESYV--TFCQL 576
+ + H I+ S + D +LTGS D T +LW +G+C A L GH+ + +
Sbjct: 254 VNILIGHCAEISSASFNWDCSLILTGSMDKTCKLWDATNGKCVATLTGHDDEILDSCFDY 313
Query: 577 EDEAAFTCSADCTIRKWDVLTGQCLQVFRGHTSIVNRILVT--NNQLFSSSYDRTARAWS 750
+ T SAD T R + T +C+ GH +++I N L + S D+TAR W
Sbjct: 314 TGKLIATASADGTARIFSAATRKCIAKLEGHEGEISKISFNPQGNHLLTGSSDKTARIWD 373
Query: 751 VDKGQVSREFRGHRNCVLTLAYSAPWDLPGAPCVEEAVAGGLLVTGSTDGTAKVWQ 918
GQ + GH + + + A++ G +++TGS D T ++W+
Sbjct: 374 AQTGQCLQVLEGHTDEIFSCAFN--------------YKGNIVITGSKDNTCRIWR 415
Database: RefSeq44_HP.fasta
Posted date: Nov 15, 2010 4:36 PM
Number of letters in database: 18,324,212
Number of sequences in database: 33,950
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33950
Number of Hits to DB: 44,017,525
Number of extensions: 1333648
Number of successful extensions: 9932
Number of sequences better than 1.0e-05: 110
Number of HSP's gapped: 8801
Number of HSP's successfully gapped: 264
Length of query: 347
Length of database: 18,324,212
Length adjustment: 103
Effective length of query: 244
Effective length of database: 14,827,362
Effective search space: 3617876328
Effective search space used: 3617876328
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel44
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20070806C-002574
(1042 letters)
Database: RefSeq44_MP.fasta
29,866 sequences; 15,452,059 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001074910.1| WD repeat domain 86 [Mus musculus]. 405 e-113
Alignment gi|NP_536353.2| F-box/WD repeat-containing protein 7 isoform 2 ... 112 4e-25
Alignment gi|NP_001171245.1| F-box/WD repeat-containing protein 7 isoform... 112 4e-25
Alignment gi|NP_001171244.1| F-box/WD repeat-containing protein 7 isoform... 112 4e-25
Alignment gi|NP_796316.2| transcription initiation factor TFIID subunit 5... 109 4e-24
Alignment gi|NP_083963.1| WD repeat-containing protein 38 [Mus musculus]. 107 2e-23
Alignment gi|NP_543124.1| WD repeat-containing protein 5 [Mus musculus]. 100 2e-21
Alignment gi|NP_038653.1| platelet-activating factor acetylhydrolase IB s... 100 2e-21
Alignment gi|NP_598776.1| F-box/WD repeat-containing protein 11 [Mus musc... 97 2e-20
Alignment gi|NP_081389.1| WD repeat-containing protein 5B [Mus musculus]. 95 1e-19
>ref|NP_001074910.1| WD repeat domain 86 [Mus musculus].
Length = 380
Score = 405 bits (1042), Expect = e-113
Identities = 191/215 (88%), Positives = 200/215 (93%)
Frame = +1
Query: 397 SALRVCADHRGGINWLSLSPDGQRLLTGSEDGTARLWSTADGQCCALLQGHESYVTFCQL 576
SALRVCADHRGGINWLSLSPDGQRLLTGSEDGTARLWST DGQCCALLQGHESYVTFC L
Sbjct: 6 SALRVCADHRGGINWLSLSPDGQRLLTGSEDGTARLWSTVDGQCCALLQGHESYVTFCHL 65
Query: 577 EDEAAFTCSADCTIRKWDVLTGQCLQVFRGHTSIVNRILVTNNQLFSSSYDRTARAWSVD 756
EDEAAFTCSADCTIR+WDV TGQCLQV+RGHTSIVNRILV N+QLFSSSYDRTAR W+VD
Sbjct: 66 EDEAAFTCSADCTIRRWDVRTGQCLQVYRGHTSIVNRILVANDQLFSSSYDRTARVWTVD 125
Query: 757 KGQVSREFRGHRNCVLTLAYSAPWDLPGAPCVEEAVAGGLLVTGSTDGTAKVWQVASGCC 936
KGQVS+EFRGHRNCVLTLAYSAP DLP PC+E A+ GGLLVTGS+D TAKVWQVASGCC
Sbjct: 126 KGQVSQEFRGHRNCVLTLAYSAPEDLPQDPCMEAAMGGGLLVTGSSDDTAKVWQVASGCC 185
Query: 937 HQTLRGHTGAVLCLVLDTPGHTAFTGSTDATIRAW 1041
HQTLRGHTGAVLCLVL HTAFTGSTDAT+RAW
Sbjct: 186 HQTLRGHTGAVLCLVLHVSSHTAFTGSTDATVRAW 220
Score = 121 bits (303), Expect = 1e-27
Identities = 72/196 (36%), Positives = 94/196 (47%), Gaps = 2/196 (1%)
Frame = +1
Query: 460 GQRLLTGSEDGTARLWSTADGQCCALLQGHESYVTFCQLE--DEAAFTCSADCTIRKWDV 633
G L+TGS D TA++W A G C L+GH V L AFT S D T+R WD+
Sbjct: 163 GGLLVTGSSDDTAKVWQVASGCCHQTLRGHTGAVLCLVLHVSSHTAFTGSTDATVRAWDI 222
Query: 634 LTGQCLQVFRGHTSIVNRILVTNNQLFSSSYDRTARAWSVDKGQVSREFRGHRNCVLTLA 813
L+G+ L+VFR H V + +T+ L+S S DRT + W D G+ F HR+ V L
Sbjct: 223 LSGEQLRVFREHQGSVICLELTDRLLYSGSADRTVKCWLADTGERVLTFPAHRHSVSALK 282
Query: 814 YSAPWDLPGAPCVEEAVAGGLLVTGSTDGTAKVWQVASGCCHQTLRGHTGAVLCLVLDTP 993
Y A G L TGS D A+ + SG + RGHT + C L
Sbjct: 283 YHA----------------GTLFTGSGDACARAFDAQSGVLQRVFRGHTFVINC--LQVH 324
Query: 994 GHTAFTGSTDATIRAW 1041
G +T S D +R W
Sbjct: 325 GQVLYTASHDGALRLW 340
Score = 76.3 bits (186), Expect = 4e-14
Identities = 50/170 (29%), Positives = 71/170 (41%), Gaps = 3/170 (1%)
Frame = +1
Query: 421 HRGGINWLSLSPDGQRLLTGSEDGTARLWSTADGQCCALLQGHESYVTFCQLEDEAAFTC 600
H G + L L TGS D T R W G+ + + H+ V +L D ++
Sbjct: 192 HTGAVLCLVLHVSSHTAFTGSTDATVRAWDILSGEQLRVFREHQGSVICLELTDRLLYSG 251
Query: 601 SADCTIRKWDVLTGQCLQVFRGHTSIVNRILVTNNQLFSSSYDRTARAWSVDKGQVSREF 780
SAD T++ W TG+ + F H V+ + LF+ S D ARA+ G + R F
Sbjct: 252 SADRTVKCWLADTGERVLTFPAHRHSVSALKYHAGTLFTGSGDACARAFDAQSGVLQRVF 311
Query: 781 RGHR---NCVLTLAYSAPWDLPGAPCVEEAVAGGLLVTGSTDGTAKVWQV 921
RGH NC+ V G +L T S DG ++W V
Sbjct: 312 RGHTFVINCL-------------------QVHGQVLYTASHDGALRLWDV 342
>ref|NP_536353.2| F-box/WD repeat-containing protein 7 isoform 2 [Mus musculus].
Length = 629
Score = 112 bits (281), Expect = 4e-25
Identities = 63/194 (32%), Positives = 91/194 (46%)
Frame = +1
Query: 460 GQRLLTGSEDGTARLWSTADGQCCALLQGHESYVTFCQLEDEAAFTCSADCTIRKWDVLT 639
G R+++GS+D T ++WS G+C L GH V Q+ D + S D T++ W+ T
Sbjct: 313 GNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDNIIISGSTDRTLKVWNAET 372
Query: 640 GQCLQVFRGHTSIVNRILVTNNQLFSSSYDRTARAWSVDKGQVSREFRGHRNCVLTLAYS 819
G+C+ GHTS V + + ++ S S D T R W ++ GQ GH V + Y
Sbjct: 373 GECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYD 432
Query: 820 APWDLPGAPCVEEAVAGGLLVTGSTDGTAKVWQVASGCCHQTLRGHTGAVLCLVLDTPGH 999
G +V+G+ D KVW + C TL+GHT V L D G
Sbjct: 433 ----------------GRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQFD--GI 474
Query: 1000 TAFTGSTDATIRAW 1041
+GS D +IR W
Sbjct: 475 HVVSGSLDTSIRVW 488
Score = 102 bits (253), Expect = 6e-22
Identities = 57/196 (29%), Positives = 90/196 (45%), Gaps = 3/196 (1%)
Frame = +1
Query: 463 QRLLTGSEDGTARLWSTADGQCCALLQGHESYVTFCQLEDEAAFTCSADCTIRKWDVLTG 642
+R+++GS D T R+W GQC +L GH + V Q + + + D ++ WD T
Sbjct: 394 KRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETE 453
Query: 643 QCLQVFRGHTSIVNRILVTNNQLFSSSYDRTARAWSVDKGQVSREFRGHRNCVLTLAYSA 822
CL +GHT+ V + + S S D + R W V+ G GH++ +
Sbjct: 454 TCLHTLQGHTNRVYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGM---- 509
Query: 823 PWDLPGAPCVEEAVAGGLLVTGSTDGTAKVWQVASGCCHQTLRG---HTGAVLCLVLDTP 993
+ +LV+G+ D T K+W + +G C QTL+G H AV CL +
Sbjct: 510 ------------ELKDNILVSGNADSTVKIWDIKTGQCLQTLQGPSKHQSAVTCLQFNK- 556
Query: 994 GHTAFTGSTDATIRAW 1041
+ T S D T++ W
Sbjct: 557 -NFVITSSDDGTVKLW 571
Score = 84.7 bits (208), Expect = 1e-16
Identities = 46/161 (28%), Positives = 77/161 (47%), Gaps = 3/161 (1%)
Frame = +1
Query: 457 DGQRLLTGSEDGTARLWSTADGQCCALLQGHESYVTFCQLEDEAAFTCSADCTIRKWDVL 636
DG+R+++G+ D ++W C LQGH + V Q + + S D +IR WDV
Sbjct: 432 DGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQFDGIHVVSGSLDTSIRVWDVE 491
Query: 637 TGQCLQVFRGHTSIVNRILVTNNQLFSSSYDRTARAWSVDKGQVSREFRG---HRNCVLT 807
TG C+ GH S+ + + + +N L S + D T + W + GQ + +G H++ V
Sbjct: 492 TGNCIHTLTGHQSLTSGMELKDNILVSGNADSTVKIWDIKTGQCLQTLQGPSKHQSAVTC 551
Query: 808 LAYSAPWDLPGAPCVEEAVAGGLLVTGSTDGTAKVWQVASG 930
L ++ ++T S DGT K+W + +G
Sbjct: 552 LQFNK----------------NFVITSSDDGTVKLWDLKTG 576
Score = 78.6 bits (192), Expect = 8e-15
Identities = 40/113 (35%), Positives = 61/113 (53%), Gaps = 3/113 (2%)
Frame = +1
Query: 445 SLSPDGQRLLTGSEDGTARLWSTADGQCCALLQGHESYVTFCQLEDEAAFTCSADCTIRK 624
SL DG +++GS D + R+W G C L GH+S + +L+D + +AD T++
Sbjct: 468 SLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKDNILVSGNADSTVKI 527
Query: 625 WDVLTGQCLQVFRG---HTSIVNRILVTNNQLFSSSYDRTARAWSVDKGQVSR 774
WD+ TGQCLQ +G H S V + N + +SS D T + W + G+ R
Sbjct: 528 WDIKTGQCLQTLQGPSKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGEFIR 580
Score = 65.9 bits (159), Expect = 5e-11
Identities = 41/131 (31%), Positives = 59/131 (45%), Gaps = 1/131 (0%)
Frame = +1
Query: 652 QVFRGHTS-IVNRILVTNNQLFSSSYDRTARAWSVDKGQVSREFRGHRNCVLTLAYSAPW 828
+V +GH ++ + N++ S S D T + WS G+ R GH V W
Sbjct: 296 KVLKGHDDHVITCLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGV--------W 347
Query: 829 DLPGAPCVEEAVAGGLLVTGSTDGTAKVWQVASGCCHQTLRGHTGAVLCLVLDTPGHTAF 1008
+ ++++GSTD T KVW +G C TL GHT V C+ L
Sbjct: 348 --------SSQMRDNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHE--KRVV 397
Query: 1009 TGSTDATIRAW 1041
+GS DAT+R W
Sbjct: 398 SGSRDATLRVW 408
>ref|NP_001171245.1| F-box/WD repeat-containing protein 7 isoform 1 [Mus musculus].
Length = 710
Score = 112 bits (281), Expect = 4e-25
Identities = 63/194 (32%), Positives = 91/194 (46%)
Frame = +1
Query: 460 GQRLLTGSEDGTARLWSTADGQCCALLQGHESYVTFCQLEDEAAFTCSADCTIRKWDVLT 639
G R+++GS+D T ++WS G+C L GH V Q+ D + S D T++ W+ T
Sbjct: 394 GNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDNIIISGSTDRTLKVWNAET 453
Query: 640 GQCLQVFRGHTSIVNRILVTNNQLFSSSYDRTARAWSVDKGQVSREFRGHRNCVLTLAYS 819
G+C+ GHTS V + + ++ S S D T R W ++ GQ GH V + Y
Sbjct: 454 GECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYD 513
Query: 820 APWDLPGAPCVEEAVAGGLLVTGSTDGTAKVWQVASGCCHQTLRGHTGAVLCLVLDTPGH 999
G +V+G+ D KVW + C TL+GHT V L D G
Sbjct: 514 ----------------GRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQFD--GI 555
Query: 1000 TAFTGSTDATIRAW 1041
+GS D +IR W
Sbjct: 556 HVVSGSLDTSIRVW 569
Score = 102 bits (253), Expect = 6e-22
Identities = 57/196 (29%), Positives = 90/196 (45%), Gaps = 3/196 (1%)
Frame = +1
Query: 463 QRLLTGSEDGTARLWSTADGQCCALLQGHESYVTFCQLEDEAAFTCSADCTIRKWDVLTG 642
+R+++GS D T R+W GQC +L GH + V Q + + + D ++ WD T
Sbjct: 475 KRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETE 534
Query: 643 QCLQVFRGHTSIVNRILVTNNQLFSSSYDRTARAWSVDKGQVSREFRGHRNCVLTLAYSA 822
CL +GHT+ V + + S S D + R W V+ G GH++ +
Sbjct: 535 TCLHTLQGHTNRVYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGM---- 590
Query: 823 PWDLPGAPCVEEAVAGGLLVTGSTDGTAKVWQVASGCCHQTLRG---HTGAVLCLVLDTP 993
+ +LV+G+ D T K+W + +G C QTL+G H AV CL +
Sbjct: 591 ------------ELKDNILVSGNADSTVKIWDIKTGQCLQTLQGPSKHQSAVTCLQFNK- 637
Query: 994 GHTAFTGSTDATIRAW 1041
+ T S D T++ W
Sbjct: 638 -NFVITSSDDGTVKLW 652
Score = 84.7 bits (208), Expect = 1e-16
Identities = 46/161 (28%), Positives = 77/161 (47%), Gaps = 3/161 (1%)
Frame = +1
Query: 457 DGQRLLTGSEDGTARLWSTADGQCCALLQGHESYVTFCQLEDEAAFTCSADCTIRKWDVL 636
DG+R+++G+ D ++W C LQGH + V Q + + S D +IR WDV
Sbjct: 513 DGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQFDGIHVVSGSLDTSIRVWDVE 572
Query: 637 TGQCLQVFRGHTSIVNRILVTNNQLFSSSYDRTARAWSVDKGQVSREFRG---HRNCVLT 807
TG C+ GH S+ + + + +N L S + D T + W + GQ + +G H++ V
Sbjct: 573 TGNCIHTLTGHQSLTSGMELKDNILVSGNADSTVKIWDIKTGQCLQTLQGPSKHQSAVTC 632
Query: 808 LAYSAPWDLPGAPCVEEAVAGGLLVTGSTDGTAKVWQVASG 930
L ++ ++T S DGT K+W + +G
Sbjct: 633 LQFNK----------------NFVITSSDDGTVKLWDLKTG 657
Score = 78.6 bits (192), Expect = 8e-15
Identities = 40/113 (35%), Positives = 61/113 (53%), Gaps = 3/113 (2%)
Frame = +1
Query: 445 SLSPDGQRLLTGSEDGTARLWSTADGQCCALLQGHESYVTFCQLEDEAAFTCSADCTIRK 624
SL DG +++GS D + R+W G C L GH+S + +L+D + +AD T++
Sbjct: 549 SLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKDNILVSGNADSTVKI 608
Query: 625 WDVLTGQCLQVFRG---HTSIVNRILVTNNQLFSSSYDRTARAWSVDKGQVSR 774
WD+ TGQCLQ +G H S V + N + +SS D T + W + G+ R
Sbjct: 609 WDIKTGQCLQTLQGPSKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGEFIR 661
Score = 65.9 bits (159), Expect = 5e-11
Identities = 41/131 (31%), Positives = 59/131 (45%), Gaps = 1/131 (0%)
Frame = +1
Query: 652 QVFRGHTS-IVNRILVTNNQLFSSSYDRTARAWSVDKGQVSREFRGHRNCVLTLAYSAPW 828
+V +GH ++ + N++ S S D T + WS G+ R GH V W
Sbjct: 377 KVLKGHDDHVITCLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGV--------W 428
Query: 829 DLPGAPCVEEAVAGGLLVTGSTDGTAKVWQVASGCCHQTLRGHTGAVLCLVLDTPGHTAF 1008
+ ++++GSTD T KVW +G C TL GHT V C+ L
Sbjct: 429 --------SSQMRDNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHE--KRVV 478
Query: 1009 TGSTDATIRAW 1041
+GS DAT+R W
Sbjct: 479 SGSRDATLRVW 489
>ref|NP_001171244.1| F-box/WD repeat-containing protein 7 isoform 1 [Mus musculus].
Length = 710
Score = 112 bits (281), Expect = 4e-25
Identities = 63/194 (32%), Positives = 91/194 (46%)
Frame = +1
Query: 460 GQRLLTGSEDGTARLWSTADGQCCALLQGHESYVTFCQLEDEAAFTCSADCTIRKWDVLT 639
G R+++GS+D T ++WS G+C L GH V Q+ D + S D T++ W+ T
Sbjct: 394 GNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDNIIISGSTDRTLKVWNAET 453
Query: 640 GQCLQVFRGHTSIVNRILVTNNQLFSSSYDRTARAWSVDKGQVSREFRGHRNCVLTLAYS 819
G+C+ GHTS V + + ++ S S D T R W ++ GQ GH V + Y
Sbjct: 454 GECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYD 513
Query: 820 APWDLPGAPCVEEAVAGGLLVTGSTDGTAKVWQVASGCCHQTLRGHTGAVLCLVLDTPGH 999
G +V+G+ D KVW + C TL+GHT V L D G
Sbjct: 514 ----------------GRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQFD--GI 555
Query: 1000 TAFTGSTDATIRAW 1041
+GS D +IR W
Sbjct: 556 HVVSGSLDTSIRVW 569
Score = 102 bits (253), Expect = 6e-22
Identities = 57/196 (29%), Positives = 90/196 (45%), Gaps = 3/196 (1%)
Frame = +1
Query: 463 QRLLTGSEDGTARLWSTADGQCCALLQGHESYVTFCQLEDEAAFTCSADCTIRKWDVLTG 642
+R+++GS D T R+W GQC +L GH + V Q + + + D ++ WD T
Sbjct: 475 KRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETE 534
Query: 643 QCLQVFRGHTSIVNRILVTNNQLFSSSYDRTARAWSVDKGQVSREFRGHRNCVLTLAYSA 822
CL +GHT+ V + + S S D + R W V+ G GH++ +
Sbjct: 535 TCLHTLQGHTNRVYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGM---- 590
Query: 823 PWDLPGAPCVEEAVAGGLLVTGSTDGTAKVWQVASGCCHQTLRG---HTGAVLCLVLDTP 993
+ +LV+G+ D T K+W + +G C QTL+G H AV CL +
Sbjct: 591 ------------ELKDNILVSGNADSTVKIWDIKTGQCLQTLQGPSKHQSAVTCLQFNK- 637
Query: 994 GHTAFTGSTDATIRAW 1041
+ T S D T++ W
Sbjct: 638 -NFVITSSDDGTVKLW 652
Score = 84.7 bits (208), Expect = 1e-16
Identities = 46/161 (28%), Positives = 77/161 (47%), Gaps = 3/161 (1%)
Frame = +1
Query: 457 DGQRLLTGSEDGTARLWSTADGQCCALLQGHESYVTFCQLEDEAAFTCSADCTIRKWDVL 636
DG+R+++G+ D ++W C LQGH + V Q + + S D +IR WDV
Sbjct: 513 DGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQFDGIHVVSGSLDTSIRVWDVE 572
Query: 637 TGQCLQVFRGHTSIVNRILVTNNQLFSSSYDRTARAWSVDKGQVSREFRG---HRNCVLT 807
TG C+ GH S+ + + + +N L S + D T + W + GQ + +G H++ V
Sbjct: 573 TGNCIHTLTGHQSLTSGMELKDNILVSGNADSTVKIWDIKTGQCLQTLQGPSKHQSAVTC 632
Query: 808 LAYSAPWDLPGAPCVEEAVAGGLLVTGSTDGTAKVWQVASG 930
L ++ ++T S DGT K+W + +G
Sbjct: 633 LQFNK----------------NFVITSSDDGTVKLWDLKTG 657
Score = 78.6 bits (192), Expect = 8e-15
Identities = 40/113 (35%), Positives = 61/113 (53%), Gaps = 3/113 (2%)
Frame = +1
Query: 445 SLSPDGQRLLTGSEDGTARLWSTADGQCCALLQGHESYVTFCQLEDEAAFTCSADCTIRK 624
SL DG +++GS D + R+W G C L GH+S + +L+D + +AD T++
Sbjct: 549 SLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKDNILVSGNADSTVKI 608
Query: 625 WDVLTGQCLQVFRG---HTSIVNRILVTNNQLFSSSYDRTARAWSVDKGQVSR 774
WD+ TGQCLQ +G H S V + N + +SS D T + W + G+ R
Sbjct: 609 WDIKTGQCLQTLQGPSKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGEFIR 661
Score = 65.9 bits (159), Expect = 5e-11
Identities = 41/131 (31%), Positives = 59/131 (45%), Gaps = 1/131 (0%)
Frame = +1
Query: 652 QVFRGHTS-IVNRILVTNNQLFSSSYDRTARAWSVDKGQVSREFRGHRNCVLTLAYSAPW 828
+V +GH ++ + N++ S S D T + WS G+ R GH V W
Sbjct: 377 KVLKGHDDHVITCLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGV--------W 428
Query: 829 DLPGAPCVEEAVAGGLLVTGSTDGTAKVWQVASGCCHQTLRGHTGAVLCLVLDTPGHTAF 1008
+ ++++GSTD T KVW +G C TL GHT V C+ L
Sbjct: 429 --------SSQMRDNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHE--KRVV 478
Query: 1009 TGSTDATIRAW 1041
+GS DAT+R W
Sbjct: 479 SGSRDATLRVW 489
>ref|NP_796316.2| transcription initiation factor TFIID subunit 5 [Mus musculus].
Length = 801
Score = 109 bits (272), Expect = 4e-24
Identities = 73/219 (33%), Positives = 95/219 (43%), Gaps = 4/219 (1%)
Frame = +1
Query: 397 SALRVCADHRGGINWLSLSPDGQRLLTGSEDGTARLWSTADGQCCALLQGHESYVTFCQL 576
S L++ H G + S SPD LL+ SEDGT RLWS C +GH V Q
Sbjct: 535 SELKILYGHSGPVYGASFSPDRNYLLSSSEDGTVRLWSLQTFTCLVGYKGHNYPVWDTQF 594
Query: 577 EDEAAFTCSA--DCTIRKWDVLTGQCLQVFRGHTSIVN--RILVTNNQLFSSSYDRTARA 744
+ S D R W Q L++F GH + VN R +N + + S DRT R
Sbjct: 595 SPYGYYFVSGGHDRVARLWATDHYQPLRIFAGHLADVNCTRFHPNSNYVATGSADRTVRL 654
Query: 745 WSVDKGQVSREFRGHRNCVLTLAYSAPWDLPGAPCVEEAVAGGLLVTGSTDGTAKVWQVA 924
W V G R F GH+ + +L +S G L TG+TDG +W +
Sbjct: 655 WDVLNGNCVRIFTGHKGPIHSLTFSPN--------------GRFLATGATDGRVLLWDIG 700
Query: 925 SGCCHQTLRGHTGAVLCLVLDTPGHTAFTGSTDATIRAW 1041
G L+GHT V L G +GS D T+R W
Sbjct: 701 HGLMVGELKGHTDTVCSLRFSRDGEILASGSMDNTVRLW 739
>ref|NP_083963.1| WD repeat-containing protein 38 [Mus musculus].
Length = 303
Score = 107 bits (266), Expect = 2e-23
Identities = 69/220 (31%), Positives = 98/220 (44%), Gaps = 7/220 (3%)
Frame = +1
Query: 403 LRVCADHRGGINWLSLSPDGQRLLTGSEDGTARLWSTADGQCCALLQGHESYVTFCQLED 582
+R H G +N + SPDG+ LLT S+DG +W T G+ L GH V C
Sbjct: 19 VRFYGQHHGEVNCSAFSPDGRTLLTASDDGCVYVWGTKSGRLLWRLAGHRGPVKSCCFSP 78
Query: 583 EAAF--TCSADCTIRKWDVLTGQCLQVFRGHTSIVNRILVT--NNQLFSSSYDRTARAWS 750
+ + S+D +IR WDV +CL V +GH V + + + QL S +D+ A W
Sbjct: 79 DGRLIASSSSDHSIRLWDVARSKCLHVLKGHQRSVETVSFSPDSKQLASGGWDKRAIVWE 138
Query: 751 VDKGQVSREFRGHRNCVLTLAYSAPWDLPGAPCVEEAVAGGLLVTGSTDGTAKVWQVASG 930
V G+ GH + + + +S D L TGS D T +W + +
Sbjct: 139 VQSGRRVHLLVGHCDSIQSSDFSPTSD--------------SLATGSWDSTVHIWDLRAS 184
Query: 931 ---CCHQTLRGHTGAVLCLVLDTPGHTAFTGSTDATIRAW 1041
+ L GHTG + CL G A +GS D TI W
Sbjct: 185 TPVVSYHNLEGHTGNISCLCYSASGLLA-SGSWDKTICVW 223
>ref|NP_543124.1| WD repeat-containing protein 5 [Mus musculus].
Length = 334
Score = 100 bits (249), Expect = 2e-21
Identities = 62/219 (28%), Positives = 101/219 (46%), Gaps = 7/219 (3%)
Frame = +1
Query: 406 RVCADHRGGINWLSLSPDGQRLLTGSEDGTARLWSTADGQCCALLQGHESYVTFCQLEDE 585
+ + H+ GI+ ++ S D L++ S+D T ++W + G+C L+GH +YV C +
Sbjct: 81 KTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQ 140
Query: 586 AAFTCSA--DCTIRKWDVLTGQCLQVFRGHTSIVNRILVT--NNQLFSSSYDRTARAWSV 753
+ S D ++R WDV TG+CL+ H+ V+ + + + SSSYD R W
Sbjct: 141 SNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT 200
Query: 754 DKGQVSREFRGHRNCVLTLAYSAPWDLPGAPCVEEAVAGGLLVTGSTDGTAKVWQVASGC 933
GQ C+ TL D P V+ + G ++ + D T K+W + G
Sbjct: 201 ASGQ----------CLKTLIDD---DNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGK 247
Query: 934 CHQTLRGHTGAVLCLVLD---TPGHTAFTGSTDATIRAW 1041
C +T GH C+ + T G +GS D + W
Sbjct: 248 CLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIW 286
Score = 88.2 bits (217), Expect = 1e-17
Identities = 55/214 (25%), Positives = 98/214 (45%), Gaps = 5/214 (2%)
Frame = +1
Query: 415 ADHRGGINWLSLSPDGQRLLTGSEDGTARLWSTADGQCCALLQGHESYVTFCQLEDEAAF 594
A H ++ + SP+G+ L + S D ++W DG+ + GH+ ++ ++
Sbjct: 42 AGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNL 101
Query: 595 TCSA--DCTIRKWDVLTGQCLQVFRGHTSIV--NRILVTNNQLFSSSYDRTARAWSVDKG 762
SA D T++ WDV +G+CL+ +GH++ V +N + S S+D + R W V G
Sbjct: 102 LVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTG 161
Query: 763 QVSREFRGHRNCVLTLAYSAPWDLPGAPCVEEAVAGGLLVTGSTDGTAKVWQVASGCCHQ 942
+ + H + V + ++ G L+V+ S DG ++W ASG C +
Sbjct: 162 KCLKTLPAHSDPVSAVHFNRD--------------GSLIVSSSYDGLCRIWDTASGQCLK 207
Query: 943 TLRGHTGAVLCLVLDTP-GHTAFTGSTDATIRAW 1041
TL + V +P G + D T++ W
Sbjct: 208 TLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW 241
Score = 69.7 bits (169), Expect = 4e-12
Identities = 51/224 (22%), Positives = 91/224 (40%), Gaps = 11/224 (4%)
Frame = +1
Query: 403 LRVCADHRGGINWLSLSPDGQRLLTGSEDGTARLWSTADGQCCALLQGHESYVTFCQLED 582
L+ H + + +P +++GS D + R+W G+C L H V+
Sbjct: 122 LKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNR 181
Query: 583 EAAFTCSA--DCTIRKWDVLTGQCLQVF----RGHTSIVNRILVTNNQLFSSSYDRTARA 744
+ + S+ D R WD +GQCL+ S V + + +++ D T +
Sbjct: 182 DGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFV-KFSPNGKYILAATLDNTLKL 240
Query: 745 WSVDKGQVSREFRGHRN---CVLTLAYSAPWDLPGAPCVEEAVAGGLLVTGSTDGTAKVW 915
W KG+ + + GH+N C+ A + + G G +V+GS D +W
Sbjct: 241 WDYSKGKCLKTYTGHKNEKYCIF-----ANFSVTG---------GKWIVSGSEDNLVYIW 286
Query: 916 QVASGCCHQTLRGHTGAVLCLVLDTPGHTAFTGS--TDATIRAW 1041
+ + Q L+GHT V+ + + + D TI+ W
Sbjct: 287 NLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 330
Score = 66.6 bits (161), Expect = 3e-11
Identities = 43/180 (23%), Positives = 78/180 (43%), Gaps = 8/180 (4%)
Frame = +1
Query: 403 LRVCADHRGGINWLSLSPDGQRLLTGSEDGTARLWSTADGQCC-ALLQGHESYVTFCQLE 579
L+ H ++ + + DG +++ S DG R+W TA GQC L+ V+F +
Sbjct: 164 LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFS 223
Query: 580 DEAAFTCSA--DCTIRKWDVLTGQCLQVFRGHTS-----IVNRILVTNNQLFSSSYDRTA 738
+ +A D T++ WD G+CL+ + GH + N + + S S D
Sbjct: 224 PNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLV 283
Query: 739 RAWSVDKGQVSREFRGHRNCVLTLAYSAPWDLPGAPCVEEAVAGGLLVTGSTDGTAKVWQ 918
W++ ++ ++ +GH + V++ A E +A L D T K+W+
Sbjct: 284 YIWNLQTKEIVQKLQGHTDVVISTACHP---------TENIIASAAL---ENDKTIKLWK 331
>ref|NP_038653.1| platelet-activating factor acetylhydrolase IB subunit alpha [Mus
musculus].
Length = 410
Score = 100 bits (248), Expect = 2e-21
Identities = 65/224 (29%), Positives = 103/224 (45%), Gaps = 12/224 (5%)
Frame = +1
Query: 406 RVCADHRGGINWLSLSPDGQRLLTGSEDGTARLWSTADGQCCALLQGHESYVTFCQL--E 579
R H + +S G+ L + S D T +LW +C + GH+ V+ +
Sbjct: 144 RTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVAIMPN 203
Query: 580 DEAAFTCSADCTIRKWDVLTGQCLQVFRGHTSIVNRILVTNNQ----LFSSSYDRTARAW 747
+ + S D TI+ W+V TG C++ F GH V +V NQ + S S D+T R W
Sbjct: 204 GDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVR--MVRPNQDGTLIASCSNDQTVRVW 261
Query: 748 SVDKGQVSREFRGHRNCVLTLA------YSAPWDLPGAPCVEEAVAGGLLVTGSTDGTAK 909
V + E R H + V ++ YS+ + G+ + G L++GS D T K
Sbjct: 262 VVATKECKAELREHEHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIK 321
Query: 910 VWQVASGCCHQTLRGHTGAVLCLVLDTPGHTAFTGSTDATIRAW 1041
+W V++G C TL GH V ++ + G + + D T+R W
Sbjct: 322 MWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVW 365
Score = 82.8 bits (203), Expect = 4e-16
Identities = 56/237 (23%), Positives = 91/237 (38%), Gaps = 24/237 (10%)
Frame = +1
Query: 403 LRVCADHRGGINWLSLSPDGQRLLTGSEDGTARLWSTADGQCCALLQGHESYVTFCQLED 582
+R H ++ +++ P+G +++ S D T ++W G C GH +V +
Sbjct: 185 IRTMHGHDHNVSSVAIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQ 244
Query: 583 EAAF--TCSADCTIRKWDVLTGQCLQVFRGHTSIVNRIL------------VTNNQ---- 708
+ +CS D T+R W V T +C R H +V I T ++
Sbjct: 245 DGTLIASCSNDQTVRVWVVATKECKAELREHEHVVECISWAPESSYSSISEATGSETKKS 304
Query: 709 ------LFSSSYDRTARAWSVDKGQVSREFRGHRNCVLTLAYSAPWDLPGAPCVEEAVAG 870
L S S D+T + W V G GH N V + + + G
Sbjct: 305 GKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHS--------------GG 350
Query: 871 GLLVTGSTDGTAKVWQVASGCCHQTLRGHTGAVLCLVLDTPGHTAFTGSTDATIRAW 1041
+++ + D T +VW + C +TL H V L TGS D T++ W
Sbjct: 351 KFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVW 407
Score = 70.1 bits (170), Expect = 3e-12
Identities = 52/192 (27%), Positives = 79/192 (41%), Gaps = 26/192 (13%)
Frame = +1
Query: 421 HRGGINWLSLSPDGQRLLTGSEDGTARLWSTADGQCCALLQGHESYVTFCQLEDEAAFTC 600
HR + + + DG + + S D T R+W A +C A L+ HE V E++++
Sbjct: 233 HREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHEHVVECISWAPESSYSS 292
Query: 601 ----------------------SADCTIRKWDVLTGQCLQVFRGHTSIVNRILVTNNQLF 714
S D TI+ WDV TG CL GH + V +L + F
Sbjct: 293 ISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKF 352
Query: 715 --SSSYDRTARAWSVDKGQVSREFRGHRNCVLTLAY--SAPWDLPGAPCVEEAVAGGLLV 882
S + D+T R W + + H + V +L + +AP+ +V
Sbjct: 353 ILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPY----------------VV 396
Query: 883 TGSTDGTAKVWQ 918
TGS D T KVW+
Sbjct: 397 TGSVDQTVKVWE 408
Score = 65.9 bits (159), Expect = 5e-11
Identities = 52/172 (30%), Positives = 73/172 (42%), Gaps = 4/172 (2%)
Frame = +1
Query: 538 LQGHESYVTFCQLEDEAAFTCSA--DCTIRKWDVLTGQCLQVFRGHTSIVNRILV--TNN 705
L GH S VT + SA D TI+ WD TG + +GHT V I +
Sbjct: 104 LSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGK 163
Query: 706 QLFSSSYDRTARAWSVDKGQVSREFRGHRNCVLTLAYSAPWDLPGAPCVEEAVAGGLLVT 885
L S S D T + W + R GH + V ++A +P G +V+
Sbjct: 164 LLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVAI-----MPN---------GDHIVS 209
Query: 886 GSTDGTAKVWQVASGCCHQTLRGHTGAVLCLVLDTPGHTAFTGSTDATIRAW 1041
S D T K+W+V +G C +T GH V + + G + S D T+R W
Sbjct: 210 ASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVW 261
>ref|NP_598776.1| F-box/WD repeat-containing protein 11 [Mus musculus].
Length = 563
Score = 97.1 bits (240), Expect = 2e-20
Identities = 61/216 (28%), Positives = 95/216 (43%), Gaps = 3/216 (1%)
Frame = +1
Query: 403 LRVCADHRGGINWLSLSPDGQRLLTGSEDGTARLWSTADGQCCALLQGHESYVTFCQLED 582
L+V H G + L L D + ++TGS D T R+W G+ L H V + +
Sbjct: 294 LKVLTGHTGSV--LCLQYDERVIVTGSSDSTVRVWDVNTGEVLNTLIHHNEAVLHLRFSN 351
Query: 583 EAAFTCSADCTIRKWDVLTGQCL---QVFRGHTSIVNRILVTNNQLFSSSYDRTARAWSV 753
TCS D +I WD+ + + +V GH + VN + + + S+S DRT + WS
Sbjct: 352 GLMVTCSKDRSIAVWDMASATDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWST 411
Query: 754 DKGQVSREFRGHRNCVLTLAYSAPWDLPGAPCVEEAVAGGLLVTGSTDGTAKVWQVASGC 933
+ R GH+ + L Y L+V+GS+D T ++W + G
Sbjct: 412 STCEFVRTLNGHKRGIACLQY----------------RDRLVVSGSSDNTIRLWDIECGA 455
Query: 934 CHQTLRGHTGAVLCLVLDTPGHTAFTGSTDATIRAW 1041
C + L GH V C+ D +G+ D I+ W
Sbjct: 456 CLRVLEGHEELVRCIRFD--NKRIVSGAYDGKIKVW 489
Score = 74.3 bits (181), Expect = 1e-13
Identities = 37/116 (31%), Positives = 59/116 (50%)
Frame = +1
Query: 406 RVCADHRGGINWLSLSPDGQRLLTGSEDGTARLWSTADGQCCALLQGHESYVTFCQLEDE 585
RV HR +N + D + +++ S D T ++WST+ + L GH+ + Q D
Sbjct: 378 RVLVGHRAAVNVVDF--DDKYIVSASGDRTIKVWSTSTCEFVRTLNGHKRGIACLQYRDR 435
Query: 586 AAFTCSADCTIRKWDVLTGQCLQVFRGHTSIVNRILVTNNQLFSSSYDRTARAWSV 753
+ S+D TIR WD+ G CL+V GH +V I N ++ S +YD + W +
Sbjct: 436 LVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDNKRIVSGAYDGKIKVWDL 491
Score = 67.0 bits (162), Expect = 2e-11
Identities = 52/203 (25%), Positives = 80/203 (39%), Gaps = 12/203 (5%)
Frame = +1
Query: 469 LLTGSEDGTARLWSTADGQCCAL---LQGHESYVTFCQLEDEAAFTCSADCTIRKWDVLT 639
++T S+D + +W A L L GH + V +D+ + S D TI+ W T
Sbjct: 354 MVTCSKDRSIAVWDMASATDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWSTST 413
Query: 640 GQCLQVFRGHTSIVNRILVTNNQLFSSSYDRTARAWSVDKGQVSREFRGHRNCVLTLAYS 819
+ ++ GH + + + + S S D T R W ++ G R GH V + +
Sbjct: 414 CEFVRTLNGHKRGIACLQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFD 473
Query: 820 APWDLPGAPCVEEAVAGGLLVTGSTDGTAKVWQV---------ASGCCHQTLRGHTGAVL 972
+V+G+ DG KVW + AS C +TL H+G V
Sbjct: 474 ----------------NKRIVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVF 517
Query: 973 CLVLDTPGHTAFTGSTDATIRAW 1041
L D + S D TI W
Sbjct: 518 RLQFDE--FQIISSSHDDTILIW 538
>ref|NP_081389.1| WD repeat-containing protein 5B [Mus musculus].
Length = 328
Score = 94.7 bits (234), Expect = 1e-19
Identities = 65/221 (29%), Positives = 104/221 (47%), Gaps = 7/221 (3%)
Frame = +1
Query: 400 ALRVC-ADHRGGINWLSLSPDGQRLLTGSEDGTARLWSTADGQCCALLQGHESYVTFCQL 576
ALR+ A H I+ + SP+G+ L + + D +W DG C L GH ++
Sbjct: 30 ALRLTLAGHSAAISSVKFSPNGEWLASSAADALIIIWGAYDGNCKKTLYGHSLEISDVAW 89
Query: 577 EDEAAFTCSA--DCTIRKWDVLTGQCLQVFRGHTSIV--NRILVTNNQLFSSSYDRTARA 744
+++ SA D T++ WD+ +G+CL+ +GH+ V +N + S S+D + +
Sbjct: 90 SSDSSRLVSASDDKTLKVWDMRSGKCLKTLKGHSDFVFCCDFNPPSNLIVSGSFDESVKI 149
Query: 745 WSVDKGQVSREFRGHRNCVLTL-AYSAPWDLPGAPCVEEAVAGGLLVTGSTDGTAKVWQV 921
W V G+ C+ TL A+S P C G L+V+GS DG ++W
Sbjct: 150 WEVKTGK----------CLKTLSAHSDPISAVNFNC-----NGSLIVSGSYDGLCRIWDA 194
Query: 922 ASGCCHQTLRGHTGAVLCLVLDTP-GHTAFTGSTDATIRAW 1041
ASG C +TL + V +P G T + D T++ W
Sbjct: 195 ASGQCLRTLADEGNPPVSFVKFSPNGKYILTATLDNTLKLW 235
Score = 89.7 bits (221), Expect = 3e-18
Identities = 59/214 (27%), Positives = 93/214 (43%), Gaps = 7/214 (3%)
Frame = +1
Query: 421 HRGGINWLSLSPDGQRLLTGSEDGTARLWSTADGQCCALLQGHESYVTFCQLEDEAAFTC 600
H I+ ++ S D RL++ S+D T ++W G+C L+GH +V C +
Sbjct: 80 HSLEISDVAWSSDSSRLVSASDDKTLKVWDMRSGKCLKTLKGHSDFVFCCDFNPPSNLIV 139
Query: 601 SA--DCTIRKWDVLTGQCLQVFRGHTSIVNRILVTNN--QLFSSSYDRTARAWSVDKGQV 768
S D +++ W+V TG+CL+ H+ ++ + N + S SYD R W GQ
Sbjct: 140 SGSFDESVKIWEVKTGKCLKTLSAHSDPISAVNFNCNGSLIVSGSYDGLCRIWDAASGQ- 198
Query: 769 SREFRGHRNCVLTLAYSAPWDLPGAPCVEEAVAGGLLVTGSTDGTAKVWQVASGCCHQTL 948
C+ TLA P V+ + G ++T + D T K+W + G C +T
Sbjct: 199 ---------CLRTLADEGN---PPVSFVKFSPNGKYILTATLDNTLKLWDYSRGRCLKTY 246
Query: 949 RGHTGAVLCLVLD---TPGHTAFTGSTDATIRAW 1041
GH CL T +GS D + W
Sbjct: 247 TGHKNEKYCLFASFSVTGRKWVVSGSEDNMVYIW 280
Score = 64.3 bits (155), Expect = 1e-10
Identities = 45/180 (25%), Positives = 83/180 (46%), Gaps = 9/180 (5%)
Frame = +1
Query: 403 LRVCADHRGGINWLSLSPDGQRLLTGSEDGTARLWSTADGQCCALL--QGHE--SYVTFC 570
L+ + H I+ ++ + +G +++GS DG R+W A GQC L +G+ S+V F
Sbjct: 158 LKTLSAHSDPISAVNFNCNGSLIVSGSYDGLCRIWDAASGQCLRTLADEGNPPVSFVKFS 217
Query: 571 QLEDEAAFTCSADCTIRKWDVLTGQCLQVFRGHTS----IVNRILVTNNQ-LFSSSYDRT 735
+ T + D T++ WD G+CL+ + GH + + VT + + S S D
Sbjct: 218 P-NGKYILTATLDNTLKLWDYSRGRCLKTYTGHKNEKYCLFASFSVTGRKWVVSGSEDNM 276
Query: 736 ARAWSVDKGQVSREFRGHRNCVLTLAYSAPWDLPGAPCVEEAVAGGLLVTGSTDGTAKVW 915
W++ ++ + +GH + V++ A ++ + +E D T KVW
Sbjct: 277 VYIWNLQTKEIVQRLQGHTDVVISAACHPTKNIIASAALE------------NDKTIKVW 324
Database: RefSeq44_MP.fasta
Posted date: Nov 15, 2010 4:36 PM
Number of letters in database: 15,452,059
Number of sequences in database: 29,866
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 29866
Number of Hits to DB: 36,147,428
Number of extensions: 1069177
Number of successful extensions: 7683
Number of sequences better than 1.0e-05: 101
Number of HSP's gapped: 6719
Number of HSP's successfully gapped: 233
Length of query: 347
Length of database: 15,452,059
Length adjustment: 102
Effective length of query: 245
Effective length of database: 12,405,727
Effective search space: 3039403115
Effective search space used: 3039403115
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel44
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20070806C-002574
(1042 letters)
Database: RefSeq44_SP.fasta
20,576 sequences; 9,542,844 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003134626.1| PREDICTED: WD repeat-containing protein 86-l... 251 4e-67
Alignment gi|XP_003134630.1| PREDICTED: ATP-binding cassette sub-family F... 183 1e-46
Alignment gi|XP_001927805.1| PREDICTED: WD repeat-containing protein 38-l... 135 4e-32
Alignment gi|XP_001929370.1| PREDICTED: transcription initiation factor T... 109 2e-24
Alignment gi|XP_003122317.1| PREDICTED: WD repeat-containing protein 5-li... 100 1e-21
Alignment gi|XP_001927336.2| PREDICTED: WD repeat-containing protein 5 [S... 100 1e-21
Alignment gi|NP_999415.1| platelet-activating factor acetylhydrolase IB s... 100 2e-21
Alignment gi|XP_001924863.2| PREDICTED: f-box/WD repeat-containing protei... 93 2e-19
Alignment gi|XP_003133751.1| PREDICTED: WD repeat-containing protein 69-l... 92 3e-19
Alignment gi|XP_003129175.1| PREDICTED: pleiotropic regulator 1-like [Sus... 91 9e-19
>ref|XP_003134626.1| PREDICTED: WD repeat-containing protein 86-like [Sus scrofa].
Length = 487
Score = 251 bits (641), Expect = 4e-67
Identities = 119/119 (100%), Positives = 119/119 (100%)
Frame = +1
Query: 685 RILVTNNQLFSSSYDRTARAWSVDKGQVSREFRGHRNCVLTLAYSAPWDLPGAPCVEEAV 864
RILVTNNQLFSSSYDRTARAWSVDKGQVSREFRGHRNCVLTLAYSAPWDLPGAPCVEEAV
Sbjct: 192 RILVTNNQLFSSSYDRTARAWSVDKGQVSREFRGHRNCVLTLAYSAPWDLPGAPCVEEAV 251
Query: 865 AGGLLVTGSTDGTAKVWQVASGCCHQTLRGHTGAVLCLVLDTPGHTAFTGSTDATIRAW 1041
AGGLLVTGSTDGTAKVWQVASGCCHQTLRGHTGAVLCLVLDTPGHTAFTGSTDATIRAW
Sbjct: 252 AGGLLVTGSTDGTAKVWQVASGCCHQTLRGHTGAVLCLVLDTPGHTAFTGSTDATIRAW 310
Score = 85.5 bits (210), Expect = 4e-17
Identities = 66/204 (32%), Positives = 90/204 (44%), Gaps = 10/204 (4%)
Frame = +1
Query: 460 GQRLLTGSEDGTARLWSTADGQCCALLQGHESYVTFCQLED--EAAFTCSADCTIRKWDV 633
G L+TGS DGTA++W A G C L+GH V L+ AFT S D TIR WD+
Sbjct: 253 GGLLVTGSTDGTAKVWQVASGCCHQTLRGHTGAVLCLVLDTPGHTAFTGSTDATIRAWDI 312
Query: 634 LTGQCLQVFRGHT-SIVNRILVTNNQLFSSSYDRTARAWSVDKGQVSREFRGHRNCVLTL 810
L+G+ L+VFR H SI+ S A + S G+ F + +
Sbjct: 313 LSGEPLRVFREHQGSIICLEDKPPEPEIGSPLGDLADSPSYQLGEGQAAF---PDALRDR 369
Query: 811 AYSAPWDLPGAP-CVEEAVAGG------LLVTGSTDGTAKVWQVASGCCHQTLRGHTGAV 969
S W + G E + AGG + TGS D A+ + SG + RGH +
Sbjct: 370 QGSGVWSILGREGSAEGSGAGGQSHCVFTVFTGSGDARARAFDAQSGALRRVFRGHAFII 429
Query: 970 LCLVLDTPGHTAFTGSTDATIRAW 1041
C + G +T S D +R W
Sbjct: 430 NC--IQVHGQVLYTASHDGALRLW 451
>ref|XP_003134630.1| PREDICTED: ATP-binding cassette sub-family F member 2-like [Sus
scrofa].
Length = 655
Score = 183 bits (465), Expect = 1e-46
Identities = 110/209 (52%), Positives = 118/209 (56%), Gaps = 3/209 (1%)
Frame = +1
Query: 58 GGSEARAEPVSTGVAPPPLEGLTYNLGP---ERTARGYEGAQFXXXXXXXXXXXXIWVFQ 228
GG E P G + L GL Y P ERTARGYEGAQF IWVFQ
Sbjct: 443 GGPE---RPGDGGPSTRSLAGL-YCSAPGSRERTARGYEGAQFPGSPESPTPGEEIWVFQ 498
Query: 229 RAPQDASAQEXXXXXXXXXXXXXXXXCCRVGAGAPLPSGAQPAXXXXXXXXXXXXXSALR 408
RAP+DASAQE CCRVGAGAPLPSGAQPA SALR
Sbjct: 499 RAPRDASAQEPGAGAPRWPRAAALGSCCRVGAGAPLPSGAQPAPGPRPTSRMGGGGSALR 558
Query: 409 VCADHRGGINWLSLSPDGQRLLTGSEDGTARLWSTADGQCCALLQGHESYVTFCQLEDEA 588
VCADHRGGINWLSLSPDGQRLLTGSEDGTARLWSTADGQCCALLQG +L +
Sbjct: 559 VCADHRGGINWLSLSPDGQRLLTGSEDGTARLWSTADGQCCALLQGEHLPDNSWELTAKG 618
Query: 589 AFTCSADCTIRKWDVLTGQCLQVFRGHTS 675
+ C ++ L+G R TS
Sbjct: 619 SCATCWTCGRQQAKRLSGDAFLGCRASTS 647
>ref|XP_001927805.1| PREDICTED: WD repeat-containing protein 38-like [Sus scrofa].
Length = 312
Score = 135 bits (339), Expect = 4e-32
Identities = 81/214 (37%), Positives = 106/214 (49%), Gaps = 7/214 (3%)
Frame = +1
Query: 421 HRGGINWLSLSPDGQRLLTGSEDGTARLWSTADGQCCALLQGHESYVTFCQLEDEAAF-- 594
HRG +N + SPDGQRLLT SEDG W T G+ L GH V FC+ +
Sbjct: 20 HRGEVNSSTFSPDGQRLLTASEDGCVYGWETQSGRLLWKLGGHTGPVKFCRFSPDGRLFA 79
Query: 595 TCSADCTIRKWDVLTGQCLQVFRGHTSIVNRILVT--NNQLFSSSYDRTARAWSVDKGQV 768
+ S+DCTIR WDV +CLQV +GH V + + + QL S +D+ W V GQV
Sbjct: 80 STSSDCTIRLWDVAKVECLQVLKGHQRSVETVSFSPDSKQLASGGWDKRVMLWEVQSGQV 139
Query: 769 SREFRGHRNCVLTLAYSAPWDLPGAPCVEEAVAGGLLVTGSTDGTAKVWQVASG---CCH 939
R GHR+ + + ++ P + C L TGS D T ++W + G H
Sbjct: 140 LRHLVGHRDSIQSSDFA-----PSSDC---------LATGSWDSTIRMWDLRGGTGAIFH 185
Query: 940 QTLRGHTGAVLCLVLDTPGHTAFTGSTDATIRAW 1041
Q L GH G + CL G A +GS D TI W
Sbjct: 186 QELEGHRGNISCLCFSAFGLLA-SGSWDKTIHIW 218
>ref|XP_001929370.1| PREDICTED: transcription initiation factor TFIID subunit 5 [Sus
scrofa].
Length = 800
Score = 109 bits (272), Expect = 2e-24
Identities = 73/219 (33%), Positives = 95/219 (43%), Gaps = 4/219 (1%)
Frame = +1
Query: 397 SALRVCADHRGGINWLSLSPDGQRLLTGSEDGTARLWSTADGQCCALLQGHESYVTFCQL 576
S L++ H G + S SPD LL+ SEDGT RLWS C +GH V Q
Sbjct: 534 SELKILYGHSGPVYGASFSPDRNYLLSSSEDGTVRLWSLQTFTCLVGYKGHNYPVWDTQF 593
Query: 577 EDEAAFTCSA--DCTIRKWDVLTGQCLQVFRGHTSIVN--RILVTNNQLFSSSYDRTARA 744
+ S D R W Q L++F GH + VN R +N + + S DRT R
Sbjct: 594 SPYGYYFVSGGHDRVARLWATDHYQPLRIFAGHLADVNCTRFHPNSNYVATGSADRTVRL 653
Query: 745 WSVDKGQVSREFRGHRNCVLTLAYSAPWDLPGAPCVEEAVAGGLLVTGSTDGTAKVWQVA 924
W V G R F GH+ + +L +S G L TG+TDG +W +
Sbjct: 654 WDVLNGNCVRIFTGHKGPIHSLTFSPN--------------GRFLATGATDGRVLLWDIG 699
Query: 925 SGCCHQTLRGHTGAVLCLVLDTPGHTAFTGSTDATIRAW 1041
G L+GHT V L G +GS D T+R W
Sbjct: 700 HGLMVGELKGHTDTVCSLRFSRDGEILASGSMDNTVRLW 738
>ref|XP_003122317.1| PREDICTED: WD repeat-containing protein 5-like [Sus scrofa].
Length = 334
Score = 100 bits (249), Expect = 1e-21
Identities = 62/219 (28%), Positives = 101/219 (46%), Gaps = 7/219 (3%)
Frame = +1
Query: 406 RVCADHRGGINWLSLSPDGQRLLTGSEDGTARLWSTADGQCCALLQGHESYVTFCQLEDE 585
+ + H+ GI+ ++ S D L++ S+D T ++W + G+C L+GH +YV C +
Sbjct: 81 KTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQ 140
Query: 586 AAFTCSA--DCTIRKWDVLTGQCLQVFRGHTSIVNRILVT--NNQLFSSSYDRTARAWSV 753
+ S D ++R WDV TG+CL+ H+ V+ + + + SSSYD R W
Sbjct: 141 SNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT 200
Query: 754 DKGQVSREFRGHRNCVLTLAYSAPWDLPGAPCVEEAVAGGLLVTGSTDGTAKVWQVASGC 933
GQ C+ TL D P V+ + G ++ + D T K+W + G
Sbjct: 201 ASGQ----------CLKTLIDD---DNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGK 247
Query: 934 CHQTLRGHTGAVLCLVLD---TPGHTAFTGSTDATIRAW 1041
C +T GH C+ + T G +GS D + W
Sbjct: 248 CLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIW 286
Score = 88.2 bits (217), Expect = 6e-18
Identities = 55/214 (25%), Positives = 98/214 (45%), Gaps = 5/214 (2%)
Frame = +1
Query: 415 ADHRGGINWLSLSPDGQRLLTGSEDGTARLWSTADGQCCALLQGHESYVTFCQLEDEAAF 594
A H ++ + SP+G+ L + S D ++W DG+ + GH+ ++ ++
Sbjct: 42 AGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNL 101
Query: 595 TCSA--DCTIRKWDVLTGQCLQVFRGHTSIV--NRILVTNNQLFSSSYDRTARAWSVDKG 762
SA D T++ WDV +G+CL+ +GH++ V +N + S S+D + R W V G
Sbjct: 102 LVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTG 161
Query: 763 QVSREFRGHRNCVLTLAYSAPWDLPGAPCVEEAVAGGLLVTGSTDGTAKVWQVASGCCHQ 942
+ + H + V + ++ G L+V+ S DG ++W ASG C +
Sbjct: 162 KCLKTLPAHSDPVSAVHFNRD--------------GSLIVSSSYDGLCRIWDTASGQCLK 207
Query: 943 TLRGHTGAVLCLVLDTP-GHTAFTGSTDATIRAW 1041
TL + V +P G + D T++ W
Sbjct: 208 TLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW 241
Score = 69.7 bits (169), Expect = 2e-12
Identities = 51/224 (22%), Positives = 91/224 (40%), Gaps = 11/224 (4%)
Frame = +1
Query: 403 LRVCADHRGGINWLSLSPDGQRLLTGSEDGTARLWSTADGQCCALLQGHESYVTFCQLED 582
L+ H + + +P +++GS D + R+W G+C L H V+
Sbjct: 122 LKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNR 181
Query: 583 EAAFTCSA--DCTIRKWDVLTGQCLQVF----RGHTSIVNRILVTNNQLFSSSYDRTARA 744
+ + S+ D R WD +GQCL+ S V + + +++ D T +
Sbjct: 182 DGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFV-KFSPNGKYILAATLDNTLKL 240
Query: 745 WSVDKGQVSREFRGHRN---CVLTLAYSAPWDLPGAPCVEEAVAGGLLVTGSTDGTAKVW 915
W KG+ + + GH+N C+ A + + G G +V+GS D +W
Sbjct: 241 WDYSKGKCLKTYTGHKNEKYCIF-----ANFSVTG---------GKWIVSGSEDNLVYIW 286
Query: 916 QVASGCCHQTLRGHTGAVLCLVLDTPGHTAFTGS--TDATIRAW 1041
+ + Q L+GHT V+ + + + D TI+ W
Sbjct: 287 NLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 330
Score = 66.6 bits (161), Expect = 2e-11
Identities = 43/180 (23%), Positives = 78/180 (43%), Gaps = 8/180 (4%)
Frame = +1
Query: 403 LRVCADHRGGINWLSLSPDGQRLLTGSEDGTARLWSTADGQCC-ALLQGHESYVTFCQLE 579
L+ H ++ + + DG +++ S DG R+W TA GQC L+ V+F +
Sbjct: 164 LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFS 223
Query: 580 DEAAFTCSA--DCTIRKWDVLTGQCLQVFRGHTS-----IVNRILVTNNQLFSSSYDRTA 738
+ +A D T++ WD G+CL+ + GH + N + + S S D
Sbjct: 224 PNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLV 283
Query: 739 RAWSVDKGQVSREFRGHRNCVLTLAYSAPWDLPGAPCVEEAVAGGLLVTGSTDGTAKVWQ 918
W++ ++ ++ +GH + V++ A E +A L D T K+W+
Sbjct: 284 YIWNLQTKEIVQKLQGHTDVVISTACHP---------TENIIASAAL---ENDKTIKLWK 331
>ref|XP_001927336.2| PREDICTED: WD repeat-containing protein 5 [Sus scrofa].
Length = 334
Score = 100 bits (249), Expect = 1e-21
Identities = 62/219 (28%), Positives = 101/219 (46%), Gaps = 7/219 (3%)
Frame = +1
Query: 406 RVCADHRGGINWLSLSPDGQRLLTGSEDGTARLWSTADGQCCALLQGHESYVTFCQLEDE 585
+ + H+ GI+ ++ S D L++ S+D T ++W + G+C L+GH +YV C +
Sbjct: 81 KTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQ 140
Query: 586 AAFTCSA--DCTIRKWDVLTGQCLQVFRGHTSIVNRILVT--NNQLFSSSYDRTARAWSV 753
+ S D ++R WDV TG+CL+ H+ V+ + + + SSSYD R W
Sbjct: 141 SNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT 200
Query: 754 DKGQVSREFRGHRNCVLTLAYSAPWDLPGAPCVEEAVAGGLLVTGSTDGTAKVWQVASGC 933
GQ C+ TL D P V+ + G ++ + D T K+W + G
Sbjct: 201 ASGQ----------CLKTLIDD---DNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGK 247
Query: 934 CHQTLRGHTGAVLCLVLD---TPGHTAFTGSTDATIRAW 1041
C +T GH C+ + T G +GS D + W
Sbjct: 248 CLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIW 286
Score = 88.2 bits (217), Expect = 6e-18
Identities = 55/214 (25%), Positives = 98/214 (45%), Gaps = 5/214 (2%)
Frame = +1
Query: 415 ADHRGGINWLSLSPDGQRLLTGSEDGTARLWSTADGQCCALLQGHESYVTFCQLEDEAAF 594
A H ++ + SP+G+ L + S D ++W DG+ + GH+ ++ ++
Sbjct: 42 AGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNL 101
Query: 595 TCSA--DCTIRKWDVLTGQCLQVFRGHTSIV--NRILVTNNQLFSSSYDRTARAWSVDKG 762
SA D T++ WDV +G+CL+ +GH++ V +N + S S+D + R W V G
Sbjct: 102 LVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTG 161
Query: 763 QVSREFRGHRNCVLTLAYSAPWDLPGAPCVEEAVAGGLLVTGSTDGTAKVWQVASGCCHQ 942
+ + H + V + ++ G L+V+ S DG ++W ASG C +
Sbjct: 162 KCLKTLPAHSDPVSAVHFNRD--------------GSLIVSSSYDGLCRIWDTASGQCLK 207
Query: 943 TLRGHTGAVLCLVLDTP-GHTAFTGSTDATIRAW 1041
TL + V +P G + D T++ W
Sbjct: 208 TLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLW 241
Score = 69.7 bits (169), Expect = 2e-12
Identities = 51/224 (22%), Positives = 91/224 (40%), Gaps = 11/224 (4%)
Frame = +1
Query: 403 LRVCADHRGGINWLSLSPDGQRLLTGSEDGTARLWSTADGQCCALLQGHESYVTFCQLED 582
L+ H + + +P +++GS D + R+W G+C L H V+
Sbjct: 122 LKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNR 181
Query: 583 EAAFTCSA--DCTIRKWDVLTGQCLQVF----RGHTSIVNRILVTNNQLFSSSYDRTARA 744
+ + S+ D R WD +GQCL+ S V + + +++ D T +
Sbjct: 182 DGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFV-KFSPNGKYILAATLDNTLKL 240
Query: 745 WSVDKGQVSREFRGHRN---CVLTLAYSAPWDLPGAPCVEEAVAGGLLVTGSTDGTAKVW 915
W KG+ + + GH+N C+ A + + G G +V+GS D +W
Sbjct: 241 WDYSKGKCLKTYTGHKNEKYCIF-----ANFSVTG---------GKWIVSGSEDNLVYIW 286
Query: 916 QVASGCCHQTLRGHTGAVLCLVLDTPGHTAFTGS--TDATIRAW 1041
+ + Q L+GHT V+ + + + D TI+ W
Sbjct: 287 NLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLW 330
Score = 66.6 bits (161), Expect = 2e-11
Identities = 43/180 (23%), Positives = 78/180 (43%), Gaps = 8/180 (4%)
Frame = +1
Query: 403 LRVCADHRGGINWLSLSPDGQRLLTGSEDGTARLWSTADGQCC-ALLQGHESYVTFCQLE 579
L+ H ++ + + DG +++ S DG R+W TA GQC L+ V+F +
Sbjct: 164 LKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFS 223
Query: 580 DEAAFTCSA--DCTIRKWDVLTGQCLQVFRGHTS-----IVNRILVTNNQLFSSSYDRTA 738
+ +A D T++ WD G+CL+ + GH + N + + S S D
Sbjct: 224 PNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLV 283
Query: 739 RAWSVDKGQVSREFRGHRNCVLTLAYSAPWDLPGAPCVEEAVAGGLLVTGSTDGTAKVWQ 918
W++ ++ ++ +GH + V++ A E +A L D T K+W+
Sbjct: 284 YIWNLQTKEIVQKLQGHTDVVISTACHP---------TENIIASAAL---ENDKTIKLWK 331
>ref|NP_999415.1| platelet-activating factor acetylhydrolase IB subunit alpha [Sus
scrofa].
Length = 410
Score = 99.8 bits (247), Expect = 2e-21
Identities = 66/224 (29%), Positives = 102/224 (45%), Gaps = 12/224 (5%)
Frame = +1
Query: 406 RVCADHRGGINWLSLSPDGQRLLTGSEDGTARLWSTADGQCCALLQGHESYVTFCQLEDE 585
R H + +S G+ L + S D T +LW +C + GH+ V+ +
Sbjct: 144 RTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVAIMPN 203
Query: 586 AAFTCSA--DCTIRKWDVLTGQCLQVFRGHTSIVNRILVTNNQ----LFSSSYDRTARAW 747
SA D TI+ W+V TG C++ F GH V +V NQ + S S D+T R W
Sbjct: 204 GDHIVSAARDKTIKMWEVQTGYCVKTFTGHREWVR--MVRPNQDGTLIASCSNDQTVRVW 261
Query: 748 SVDKGQVSREFRGHRNCVLTLA------YSAPWDLPGAPCVEEAVAGGLLVTGSTDGTAK 909
V + E R H + V ++ YS+ + G+ + G L++GS D T K
Sbjct: 262 VVATKECKAELREHEHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIK 321
Query: 910 VWQVASGCCHQTLRGHTGAVLCLVLDTPGHTAFTGSTDATIRAW 1041
+W V++G C TL GH V ++ + G + + D T+R W
Sbjct: 322 MWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVW 365
Score = 81.6 bits (200), Expect = 5e-16
Identities = 55/237 (23%), Positives = 91/237 (38%), Gaps = 24/237 (10%)
Frame = +1
Query: 403 LRVCADHRGGINWLSLSPDGQRLLTGSEDGTARLWSTADGQCCALLQGHESYVTFCQLED 582
+R H ++ +++ P+G +++ + D T ++W G C GH +V +
Sbjct: 185 IRTMHGHDHNVSSVAIMPNGDHIVSAARDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQ 244
Query: 583 EAAF--TCSADCTIRKWDVLTGQCLQVFRGHTSIVNRIL------------VTNNQ---- 708
+ +CS D T+R W V T +C R H +V I T ++
Sbjct: 245 DGTLIASCSNDQTVRVWVVATKECKAELREHEHVVECISWAPESSYSSISEATGSETKKS 304
Query: 709 ------LFSSSYDRTARAWSVDKGQVSREFRGHRNCVLTLAYSAPWDLPGAPCVEEAVAG 870
L S S D+T + W V G GH N V + + + G
Sbjct: 305 GKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHS--------------GG 350
Query: 871 GLLVTGSTDGTAKVWQVASGCCHQTLRGHTGAVLCLVLDTPGHTAFTGSTDATIRAW 1041
+++ + D T +VW + C +TL H V L TGS D T++ W
Sbjct: 351 KFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVW 407
Score = 70.1 bits (170), Expect = 2e-12
Identities = 52/192 (27%), Positives = 79/192 (41%), Gaps = 26/192 (13%)
Frame = +1
Query: 421 HRGGINWLSLSPDGQRLLTGSEDGTARLWSTADGQCCALLQGHESYVTFCQLEDEAAFTC 600
HR + + + DG + + S D T R+W A +C A L+ HE V E++++
Sbjct: 233 HREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHEHVVECISWAPESSYSS 292
Query: 601 ----------------------SADCTIRKWDVLTGQCLQVFRGHTSIVNRILVTNNQLF 714
S D TI+ WDV TG CL GH + V +L + F
Sbjct: 293 ISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKF 352
Query: 715 --SSSYDRTARAWSVDKGQVSREFRGHRNCVLTLAY--SAPWDLPGAPCVEEAVAGGLLV 882
S + D+T R W + + H + V +L + +AP+ +V
Sbjct: 353 ILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPY----------------VV 396
Query: 883 TGSTDGTAKVWQ 918
TGS D T KVW+
Sbjct: 397 TGSVDQTVKVWE 408
Score = 64.7 bits (156), Expect = 7e-11
Identities = 51/172 (29%), Positives = 73/172 (42%), Gaps = 4/172 (2%)
Frame = +1
Query: 538 LQGHESYVTFCQLEDEAAFTCSA--DCTIRKWDVLTGQCLQVFRGHTSIVNRILV--TNN 705
L GH S VT + SA D TI+ WD TG + +GHT V I +
Sbjct: 104 LSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGK 163
Query: 706 QLFSSSYDRTARAWSVDKGQVSREFRGHRNCVLTLAYSAPWDLPGAPCVEEAVAGGLLVT 885
L S S D T + W + R GH + V ++A +P G +V+
Sbjct: 164 LLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVAI-----MPN---------GDHIVS 209
Query: 886 GSTDGTAKVWQVASGCCHQTLRGHTGAVLCLVLDTPGHTAFTGSTDATIRAW 1041
+ D T K+W+V +G C +T GH V + + G + S D T+R W
Sbjct: 210 AARDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVW 261
>ref|XP_001924863.2| PREDICTED: f-box/WD repeat-containing protein 1A [Sus scrofa].
Length = 569
Score = 93.2 bits (230), Expect = 2e-19
Identities = 59/215 (27%), Positives = 94/215 (43%), Gaps = 3/215 (1%)
Frame = +1
Query: 406 RVCADHRGGINWLSLSPDGQRLLTGSEDGTARLWSTADGQCCALLQGHESYVTFCQLEDE 585
R+ H G + L L D + ++TGS D T R+W G+ L H V + +
Sbjct: 301 RILTGHTGSV--LCLQYDERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNG 358
Query: 586 AAFTCSADCTIRKWDVLTGQCL---QVFRGHTSIVNRILVTNNQLFSSSYDRTARAWSVD 756
TCS D +I WD+ + + +V GH + VN + + + S+S DRT + W+
Sbjct: 359 MMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTS 418
Query: 757 KGQVSREFRGHRNCVLTLAYSAPWDLPGAPCVEEAVAGGLLVTGSTDGTAKVWQVASGCC 936
+ R GH+ + L Y L+V+GS+D T ++W + G C
Sbjct: 419 TCEFVRTLNGHKRGIACLQY----------------RDRLVVSGSSDNTIRLWDIECGAC 462
Query: 937 HQTLRGHTGAVLCLVLDTPGHTAFTGSTDATIRAW 1041
+ L GH V C+ D +G+ D I+ W
Sbjct: 463 LRVLEGHEELVRCIRFD--NKRIVSGAYDGKIKVW 495
Score = 73.2 bits (178), Expect = 2e-13
Identities = 36/116 (31%), Positives = 59/116 (50%)
Frame = +1
Query: 406 RVCADHRGGINWLSLSPDGQRLLTGSEDGTARLWSTADGQCCALLQGHESYVTFCQLEDE 585
RV HR +N + D + +++ S D T ++W+T+ + L GH+ + Q D
Sbjct: 384 RVLVGHRAAVNVVDF--DDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYRDR 441
Query: 586 AAFTCSADCTIRKWDVLTGQCLQVFRGHTSIVNRILVTNNQLFSSSYDRTARAWSV 753
+ S+D TIR WD+ G CL+V GH +V I N ++ S +YD + W +
Sbjct: 442 LVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDNKRIVSGAYDGKIKVWDL 497
>ref|XP_003133751.1| PREDICTED: WD repeat-containing protein 69-like [Sus scrofa].
Length = 447
Score = 92.4 bits (228), Expect = 3e-19
Identities = 61/229 (26%), Positives = 95/229 (41%), Gaps = 32/229 (13%)
Frame = +1
Query: 451 SPDGQRLLTGSEDGTARLWSTADGQCCALLQGHESYVTFCQLEDEAAF--TCSADCTIRK 624
+P G ++ TGS D T +LWS G+C +GH + + ++ T S D T +
Sbjct: 176 NPYGDKIATGSFDKTCKLWSVETGKCYHTFRGHAAEIVCLSFNPQSTLVATGSMDTTAKL 235
Query: 625 WDVLTGQCLQVFRGHTSIVNRIL--VTNNQLFSSSYDRTARAWSVDKGQVSREFRGH--- 789
WD+ G+ + GH++ + + + +++ + S+D T W G+ GH
Sbjct: 236 WDIQNGEQVCTLMGHSAEIISLSFNTSGDRIITGSFDHTVIVWDAGTGRKLYTLIGHCAE 295
Query: 790 -------RNCVLTLAYSAP-----WDLPGAPCVEEAV-------------AGGLLVTGST 894
+C L L S WD CV G L+ T S
Sbjct: 296 ISSALFNWDCSLILTGSMDKTCMLWDATNEKCVATLTCHDDEILDSCFDYTGKLIATASA 355
Query: 895 DGTAKVWQVASGCCHQTLRGHTGAVLCLVLDTPGHTAFTGSTDATIRAW 1041
DGTA+V+ A+ C L GH G + + + G+ TGS D T R W
Sbjct: 356 DGTARVFSAATRKCITKLEGHEGEISKISFNPQGNRLLTGSADKTARIW 404
Score = 87.8 bits (216), Expect = 8e-18
Identities = 57/205 (27%), Positives = 90/205 (43%), Gaps = 5/205 (2%)
Frame = +1
Query: 442 LSLSPDGQRLLTGSEDGTARLWSTADGQCCALLQGHESYV---TFCQLEDEAAFTCSADC 612
++L+ G +TGS D T +LW A G+ L+GH + V F + T S D
Sbjct: 130 VALNKSGSCFITGSYDRTCKLWDMASGEELHTLEGHRNVVYAIAFNNPYGDKIATGSFDK 189
Query: 613 TIRKWDVLTGQCLQVFRGHTSIVNRILVT--NNQLFSSSYDRTARAWSVDKGQVSREFRG 786
T + W V TG+C FRGH + + + + + + S D TA+ W + G+ G
Sbjct: 190 TCKLWSVETGKCYHTFRGHAAEIVCLSFNPQSTLVATGSMDTTAKLWDIQNGEQVCTLMG 249
Query: 787 HRNCVLTLAYSAPWDLPGAPCVEEAVAGGLLVTGSTDGTAKVWQVASGCCHQTLRGHTGA 966
H +++L+++ +G ++TGS D T VW +G TL GH
Sbjct: 250 HSAEIISLSFN--------------TSGDRIITGSFDHTVIVWDAGTGRKLYTLIGHCAE 295
Query: 967 VLCLVLDTPGHTAFTGSTDATIRAW 1041
+ + + TGS D T W
Sbjct: 296 ISSALFNWDCSLILTGSMDKTCMLW 320
Score = 84.3 bits (207), Expect = 8e-17
Identities = 57/211 (27%), Positives = 88/211 (41%), Gaps = 4/211 (1%)
Frame = +1
Query: 421 HRGGINWLSLSPDGQRLLTGSEDGTARLWSTADGQCCALLQGHESYVTFCQLEDEAAF-- 594
H I LS + G R++TGS D T +W G+ L GH + ++ + +
Sbjct: 250 HSAEIISLSFNTSGDRIITGSFDHTVIVWDAGTGRKLYTLIGHCAEISSALFNWDCSLIL 309
Query: 595 TCSADCTIRKWDVLTGQCLQVFRGHTSIV--NRILVTNNQLFSSSYDRTARAWSVDKGQV 768
T S D T WD +C+ H + + T + ++S D TAR +S +
Sbjct: 310 TGSMDKTCMLWDATNEKCVATLTCHDDEILDSCFDYTGKLIATASADGTARVFSAATRKC 369
Query: 769 SREFRGHRNCVLTLAYSAPWDLPGAPCVEEAVAGGLLVTGSTDGTAKVWQVASGCCHQTL 948
+ GH + ++++ G L+TGS D TA++W +G C Q L
Sbjct: 370 ITKLEGHEGEISKISFNPQ--------------GNRLLTGSADKTARIWDAQTGQCLQVL 415
Query: 949 RGHTGAVLCLVLDTPGHTAFTGSTDATIRAW 1041
GHT + + G TGS D T R W
Sbjct: 416 EGHTDEIFSCAFNYKGDIIITGSKDNTCRIW 446
Score = 79.3 bits (194), Expect = 3e-15
Identities = 40/132 (30%), Positives = 61/132 (46%), Gaps = 2/132 (1%)
Frame = +1
Query: 652 QVFRGHTSIVNRILVTNNQ--LFSSSYDRTARAWSVDKGQVSREFRGHRNCVLTLAYSAP 825
+V R H + + + + + SYDRT + W + G+ GHRN V +A++ P
Sbjct: 118 KVLRAHILPLTNVALNKSGSCFITGSYDRTCKLWDMASGEELHTLEGHRNVVYAIAFNNP 177
Query: 826 WDLPGAPCVEEAVAGGLLVTGSTDGTAKVWQVASGCCHQTLRGHTGAVLCLVLDTPGHTA 1005
+ G + TGS D T K+W V +G C+ T RGH ++CL +
Sbjct: 178 Y-------------GDKIATGSFDKTCKLWSVETGKCYHTFRGHAAEIVCLSFNPQSTLV 224
Query: 1006 FTGSTDATIRAW 1041
TGS D T + W
Sbjct: 225 ATGSMDTTAKLW 236
Score = 75.5 bits (184), Expect = 4e-14
Identities = 48/174 (27%), Positives = 78/174 (44%), Gaps = 5/174 (2%)
Frame = +1
Query: 412 CADHRGGI-NWLSLSPDGQRLLTGSEDGTARLWSTADGQCCALLQGHESYV--TFCQLED 582
CA+ + NW D +LTGS D T LW + +C A L H+ + +
Sbjct: 293 CAEISSALFNW-----DCSLILTGSMDKTCMLWDATNEKCVATLTCHDDEILDSCFDYTG 347
Query: 583 EAAFTCSADCTIRKWDVLTGQCLQVFRGHTSIVNRILVT--NNQLFSSSYDRTARAWSVD 756
+ T SAD T R + T +C+ GH +++I N+L + S D+TAR W
Sbjct: 348 KLIATASADGTARVFSAATRKCITKLEGHEGEISKISFNPQGNRLLTGSADKTARIWDAQ 407
Query: 757 KGQVSREFRGHRNCVLTLAYSAPWDLPGAPCVEEAVAGGLLVTGSTDGTAKVWQ 918
GQ + GH + + + A++ G +++TGS D T ++W+
Sbjct: 408 TGQCLQVLEGHTDEIFSCAFN--------------YKGDIIITGSKDNTCRIWR 447
>ref|XP_003129175.1| PREDICTED: pleiotropic regulator 1-like [Sus scrofa].
Length = 513
Score = 90.9 bits (224), Expect = 9e-19
Identities = 63/216 (29%), Positives = 96/216 (44%), Gaps = 4/216 (1%)
Frame = +1
Query: 406 RVCADHRGGINWLSLSPDGQRLLTGSEDGTARLWSTADGQCCALLQGHESYV--TFCQLE 579
RV + H G + +++ P Q +TGS D T ++W A G+ L GH S V
Sbjct: 197 RVISGHLGWVRCIAVEPGNQWFVTGSADRTIKIWDLASGKLKLSLTGHISTVRGVIVSTR 256
Query: 580 DEAAFTCSADCTIRKWDVLTGQCLQVFRGHTSIVNRILV--TNNQLFSSSYDRTARAWSV 753
F+C D ++ WD+ + ++ + GH S V + + T + L + S D TAR W V
Sbjct: 257 SPYLFSCGEDKQVKCWDLEYNKVIRHYHGHLSAVYGLDLHPTIDVLVTCSRDSTARIWDV 316
Query: 754 DKGQVSREFRGHRNCVLTLAYSAPWDLPGAPCVEEAVAGGLLVTGSTDGTAKVWQVASGC 933
GH N V T+ A A ++TGS D T ++W + +G
Sbjct: 317 RTKASVHTLSGHTNAVATVRCQA--------------AEPQIITGSHDTTIRLWDLVAGK 362
Query: 934 CHQTLRGHTGAVLCLVLDTPGHTAFTGSTDATIRAW 1041
TL H +V +VL +T +GS D I+ W
Sbjct: 363 TRVTLTNHKKSVRAVVLHPRHYTLASGSPD-NIKQW 397
Database: RefSeq44_SP.fasta
Posted date: Nov 15, 2010 4:36 PM
Number of letters in database: 9,542,844
Number of sequences in database: 20,576
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 20576
Number of Hits to DB: 23,486,686
Number of extensions: 730513
Number of successful extensions: 6023
Number of sequences better than 1.0e-05: 72
Number of HSP's gapped: 5416
Number of HSP's successfully gapped: 159
Length of query: 347
Length of database: 9,542,844
Length adjustment: 99
Effective length of query: 248
Effective length of database: 7,505,820
Effective search space: 1861443360
Effective search space used: 1861443360
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)