Search to RefSeqBP_Rel44
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20070806C-003702
(1181 letters)
Database: RefSeq44_BP.fasta
33,615 sequences; 18,071,151 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001029772.1| D-beta-hydroxybutyrate dehydrogenase, mitoch... 327 e-149
Alignment gi|NP_776591.2| 11-cis retinol dehydrogenase [Bos taurus]. 93 2e-35
Alignment gi|NP_001069194.1| estradiol 17-beta-dehydrogenase 2 [Bos tauru... 124 2e-28
Alignment gi|NP_001030472.1| 17-beta-hydroxysteroid dehydrogenase type 6 ... 118 1e-26
Alignment gi|NP_001069264.1| retinol dehydrogenase 16 [Bos taurus]. 111 1e-24
Alignment gi|NP_777067.1| corticosteroid 11-beta-dehydrogenase isozyme 2 ... 107 3e-23
Alignment gi|NP_777158.1| dehydrogenase/reductase SDR family member 9 pre... 103 2e-22
Alignment gi|NP_001077206.1| short-chain dehydrogenase/reductase family 9... 97 3e-20
Alignment gi|XP_002702202.1| PREDICTED: dehydrogenase/reductase SDR famil... 59 6e-14
Alignment gi|NP_001030420.1| dehydrogenase/reductase SDR family member 7B... 59 7e-14
>ref|NP_001029772.1| D-beta-hydroxybutyrate dehydrogenase, mitochondrial precursor [Bos
taurus].
Length = 344
Score = 327 bits (838), Expect(2) = e-149
Identities = 165/194 (85%), Positives = 173/194 (89%)
Frame = +2
Query: 236 RLSRPLSQLPRKTLNFSERENGARGSLLFYSPSFVPGSRRTYADSVNPVGSKAVLVTGCD 415
RLSRPLSQLPRKTLNFS+RENG RGSLL YS FVP RRTYA SV+PVGSKAVL+TGCD
Sbjct: 5 RLSRPLSQLPRKTLNFSDRENGTRGSLLLYSAPFVPVGRRTYAASVDPVGSKAVLITGCD 64
Query: 416 SGFGFSLAKHLHSKGFLVFAGCLMKDKGHDGVKELDSLKSDRLRTVQLNXXXXXXXXXXX 595
SGFGFSLAKHLHS+GFLVFAGCLMKDKG DGVKELDS+KSDRLRTVQLN
Sbjct: 65 SGFGFSLAKHLHSEGFLVFAGCLMKDKGSDGVKELDSMKSDRLRTVQLNVCKSEEVDKAA 124
Query: 596 XTIRSSLQDPEKGLWGLVNNAGISTFGDVEFTSMETYKEVAEVNLWGTVRVTKSFLPLIR 775
IRSSL+DPEKGLWGLVNNAGISTFGDVEFTSMETYKEVAEVNLWGTVRVTK+FLPLIR
Sbjct: 125 EVIRSSLEDPEKGLWGLVNNAGISTFGDVEFTSMETYKEVAEVNLWGTVRVTKAFLPLIR 184
Query: 776 RAKGRVVNISSIMG 817
RAKGRVVNISS+MG
Sbjct: 185 RAKGRVVNISSMMG 198
Score = 222 bits (566), Expect(2) = e-149
Identities = 106/123 (86%), Positives = 114/123 (92%), Gaps = 1/123 (0%)
Frame = +1
Query: 814 GRLANVSRSPYCITKFGVEAFSDCLRYEMHPLGVKVSVVEPGNFIVATSLYS-PERIRAI 990
GR+ANV+RSPYCITKFGVEAFSDCLRYEMHPLGVKVSVVEPGNFI ATSLY ERI+AI
Sbjct: 198 GRMANVARSPYCITKFGVEAFSDCLRYEMHPLGVKVSVVEPGNFIAATSLYGGTERIQAI 257
Query: 991 ATKMWEQVPETVRQDYGRKYFDEMVARMENFCNSGSTDTSPVINAVTHALTSTTPYTRYH 1170
A KMWE++PE VRQDYGRKYFDE VARME++C SGSTDTSPVI AVTHALT+TTPYTRYH
Sbjct: 258 ANKMWEELPEVVRQDYGRKYFDEKVARMESYCTSGSTDTSPVIKAVTHALTATTPYTRYH 317
Query: 1171 PMD 1179
PMD
Sbjct: 318 PMD 320
>ref|NP_776591.2| 11-cis retinol dehydrogenase [Bos taurus].
Length = 318
Score = 93.2 bits (230), Expect(2) = 2e-35
Identities = 54/148 (36%), Positives = 80/148 (54%), Gaps = 1/148 (0%)
Frame = +2
Query: 377 PVGSKAVLVTGCDSGFGFSLAKHLHSKGFLVFAGCLMKDKGHDGVKELDSLKSDRLRTVQ 556
P + +TGCDSGFG LA L +GF V A CL G ++L + S RL T
Sbjct: 25 PASDAFIFITGCDSGFGRLLALRLDQRGFRVLASCLTPS----GAEDLQRVASSRLHTTL 80
Query: 557 LNXXXXXXXXXXXXTIRSSLQDPEKGLWGLVNNAGIS-TFGDVEFTSMETYKEVAEVNLW 733
L+ + + + E GL+GLVNNAG++ G + + E ++ V VN
Sbjct: 81 LDVTDPQSIRQAVKWVETHVG--EAGLFGLVNNAGVAGIIGPTPWQTREDFQRVLNVNTL 138
Query: 734 GTVRVTKSFLPLIRRAKGRVVNISSIMG 817
G + VT + LPL+ +A+GRV+NI+S++G
Sbjct: 139 GPIGVTLALLPLLLQARGRVINITSVLG 166
Score = 75.5 bits (184), Expect(2) = 2e-35
Identities = 44/121 (36%), Positives = 65/121 (53%), Gaps = 1/121 (0%)
Frame = +1
Query: 814 GRLANVSRSPYCITKFGVEAFSDCLRYEMHPLGVKVSVVEPGNFIVATSLYSPERIRAIA 993
GRLA + YC++KFG+EAFSD LR ++ P GV+VS+VEPG F T + + E +
Sbjct: 166 GRLA-ANGGGYCVSKFGLEAFSDSLRRDVAPFGVRVSIVEPGFF--RTPVTNLETLEDTL 222
Query: 994 TKMWEQVPETVRQDYGRKYFDEMVARMENFCNS-GSTDTSPVINAVTHALTSTTPYTRYH 1170
W ++P + YG + + + + N D + V + HALT+ P TRY
Sbjct: 223 QACWARLPPATQALYGEAFLTKYLRVQQRIMNMICDPDLAKVSRCLEHALTARHPRTRYS 282
Query: 1171 P 1173
P
Sbjct: 283 P 283
>ref|NP_001069194.1| estradiol 17-beta-dehydrogenase 2 [Bos taurus].
Length = 388
Score = 124 bits (310), Expect = 2e-28
Identities = 72/152 (47%), Positives = 89/152 (58%), Gaps = 1/152 (0%)
Frame = +2
Query: 377 PVGSKAVLVTGCDSGFGFSLAKHLHSKGFLVFAGCLMKDKGHDGVKELDSLKSDRLRTVQ 556
PV KAVL+TGCDSGFG LAK+L GF VFAG L D+ G +EL S L +Q
Sbjct: 80 PVDQKAVLITGCDSGFGHGLAKYLDELGFTVFAGVL--DEQGSGAEELRRTCSKNLSVLQ 137
Query: 557 LNXXXXXXXXXXXXTIRSSLQDPEKGLWGLVNNAGISTFG-DVEFTSMETYKEVAEVNLW 733
LN ++ LQ+ KGLW ++NNAG+ D E M YK VN +
Sbjct: 138 LNITNTQEIKAAYSKVKEKLQN--KGLWAVINNAGVLGLPTDGELIPMTEYKRCMAVNFF 195
Query: 734 GTVRVTKSFLPLIRRAKGRVVNISSIMGAWPM 829
G V VTK FLPL+R++KGR+VNISS+ G PM
Sbjct: 196 GAVEVTKVFLPLLRKSKGRLVNISSMAGGVPM 227
Score = 58.5 bits (140), Expect = 1e-08
Identities = 43/142 (30%), Positives = 66/142 (46%), Gaps = 18/142 (12%)
Frame = +1
Query: 802 QQHNGRLANVSR----------SPYCITKFGVEAFSDCLRYEMHPLGVKVSVVEPGNFIV 951
++ GRL N+S + Y +K + FS LR E+ GVKVSV++PG F
Sbjct: 209 RKSKGRLVNISSMAGGVPMQKMAAYGSSKAALIMFSSILRQELSKWGVKVSVIQPGGFKT 268
Query: 952 ATSLYSPERIRAIATKMWEQVPET--------VRQDYGRKYFDEMVARMENFCNSGSTDT 1107
S S +MWE++ T V++DYG+ Y + + S D
Sbjct: 269 NISGTS---------QMWEKLERTVLDNLSPEVQEDYGQDYILSERSFLNLMKTSTDPDI 319
Query: 1108 SPVINAVTHALTSTTPYTRYHP 1173
SPV+ V HA+++ +P+ Y P
Sbjct: 320 SPVLLDVRHAISAQSPFAFYAP 341
>ref|NP_001030472.1| 17-beta-hydroxysteroid dehydrogenase type 6 precursor [Bos taurus].
Length = 317
Score = 118 bits (295), Expect = 1e-26
Identities = 66/150 (44%), Positives = 93/150 (62%), Gaps = 1/150 (0%)
Frame = +2
Query: 371 VNPVGSKAVLVTGCDSGFGFSLAKHLHSKGFLVFAGCLMKDKGHDGVKELDSLKSDRLRT 550
V+ + K V +TGCDSGFG LA+ L +G V AGCL + G ++L + SDRL+T
Sbjct: 24 VSHLQDKFVFITGCDSGFGNQLARQLDLRGLRVLAGCLTEQ----GAEQLRNQTSDRLQT 79
Query: 551 VQLNXXXXXXXXXXXXTIRSSLQDPEKGLWGLVNNAGI-STFGDVEFTSMETYKEVAEVN 727
V L+ ++ + D +GLWGLVNNAGI + G E+ +ETY++ VN
Sbjct: 80 VILDVTKTESIAAATEWVKECVGD--RGLWGLVNNAGIFHSHGYAEWIKIETYRDTLRVN 137
Query: 728 LWGTVRVTKSFLPLIRRAKGRVVNISSIMG 817
L G + VT S LPL+R+A+GR+VN+SSI+G
Sbjct: 138 LIGVIEVTLSMLPLVRKAQGRIVNVSSILG 167
Score = 87.0 bits (214), Expect = 3e-17
Identities = 50/127 (39%), Positives = 74/127 (58%), Gaps = 9/127 (7%)
Frame = +1
Query: 814 GRLANVSR---------SPYCITKFGVEAFSDCLRYEMHPLGVKVSVVEPGNFIVATSLY 966
GR+ NVS + Y +K+GVEAFSD LR E+ GVKVS+VEPG F T++
Sbjct: 157 GRIVNVSSILGRIAFFGAVYSCSKYGVEAFSDILRRELQHFGVKVSMVEPGYF--RTAMT 214
Query: 967 SPERIRAIATKMWEQVPETVRQDYGRKYFDEMVARMENFCNSGSTDTSPVINAVTHALTS 1146
++ I ++W++ P +++ YG+K+FD M+ S ST+ + V + + HALTS
Sbjct: 215 DWQKFSEIMKQIWKETPAHIKETYGQKFFDAYHDLMKQGLLSCSTNLNLVTDCMEHALTS 274
Query: 1147 TTPYTRY 1167
P TRY
Sbjct: 275 VHPRTRY 281
>ref|NP_001069264.1| retinol dehydrogenase 16 [Bos taurus].
Length = 317
Score = 111 bits (277), Expect = 1e-24
Identities = 65/150 (43%), Positives = 92/150 (61%), Gaps = 1/150 (0%)
Frame = +2
Query: 371 VNPVGSKAVLVTGCDSGFGFSLAKHLHSKGFLVFAGCLMKDKGHDGVKELDSLKSDRLRT 550
V+ + K V +TGCDSGFG LA+ L +G V A CL + G ++L + SDRL+T
Sbjct: 24 VSHLRDKFVFITGCDSGFGNLLARQLDLRGLRVLAACLTEK----GAEQLRNQTSDRLQT 79
Query: 551 VQLNXXXXXXXXXXXXTIRSSLQDPEKGLWGLVNNAGIST-FGDVEFTSMETYKEVAEVN 727
V L+ ++ + D +GLWGLVNNAGIST E+ + + + ++ +VN
Sbjct: 80 VILDVTKTDSVAAATEWVKERVGD--RGLWGLVNNAGISTPTAPNEWLTKQDFMKILDVN 137
Query: 728 LWGTVRVTKSFLPLIRRAKGRVVNISSIMG 817
L G + VT S LPL+R+A+GRVVN+SSIMG
Sbjct: 138 LLGVIDVTLSVLPLVRKARGRVVNVSSIMG 167
Score = 82.4 bits (202), Expect = 7e-16
Identities = 47/129 (36%), Positives = 69/129 (53%), Gaps = 9/129 (6%)
Frame = +1
Query: 814 GRLANVSR---------SPYCITKFGVEAFSDCLRYEMHPLGVKVSVVEPGNFIVATSLY 966
GR+ NVS YC++K+GVEAFSD LR E+ GVKV ++EPG F T++
Sbjct: 157 GRVVNVSSIMGRVALLGGGYCMSKYGVEAFSDSLRRELSYFGVKVVMIEPGYF--KTAVT 214
Query: 967 SPERIRAIATKMWEQVPETVRQDYGRKYFDEMVARMENFCNSGSTDTSPVINAVTHALTS 1146
SP+ + W Q +++ YG K+ ++ ++ + D S V N + HALT+
Sbjct: 215 SPKALSQGFQASWNQASPEIKELYGEKFMANLMKSVDLLETTSCQDLSLVTNCMEHALTA 274
Query: 1147 TTPYTRYHP 1173
P TRY P
Sbjct: 275 CHPRTRYSP 283
>ref|NP_777067.1| corticosteroid 11-beta-dehydrogenase isozyme 2 [Bos taurus].
Length = 404
Score = 107 bits (266), Expect = 3e-23
Identities = 62/151 (41%), Positives = 85/151 (56%), Gaps = 1/151 (0%)
Frame = +2
Query: 377 PVGSKAVLVTGCDSGFGFSLAKHLHSKGFLVFAGCLMKDKGHDGVKELDSLKSDRLRTVQ 556
PV ++AVL+TGCDSGFG + AK L + GF V A L D G EL + S RL+ +Q
Sbjct: 79 PVATRAVLITGCDSGFGNATAKKLDTMGFTVLATVL--DLNSPGALELRACCSSRLKLLQ 136
Query: 557 LNXXXXXXXXXXXXTIRSSLQDPEKGLWGLVNNAGISTF-GDVEFTSMETYKEVAEVNLW 733
++ + + P GLWGLVNNAG + F D E + T++ EVN +
Sbjct: 137 MDLTKPGDISRVLEFTK--VHTPSTGLWGLVNNAGQNIFVADAELCPVATFRTCMEVNFF 194
Query: 734 GTVRVTKSFLPLIRRAKGRVVNISSIMGAWP 826
G + +TK LPL+RR+ GR+V +SS G P
Sbjct: 195 GALEMTKGLLPLLRRSSGRIVTVSSPAGDMP 225
Score = 51.6 bits (122), Expect = 1e-06
Identities = 35/134 (26%), Positives = 64/134 (47%), Gaps = 10/134 (7%)
Frame = +1
Query: 802 QQHNGRLANVSRS----PY-CITKFGVEAFSDCLRY-----EMHPLGVKVSVVEPGNFIV 951
++ +GR+ VS P+ C+ +G + L E+ P GVKVS+++P F
Sbjct: 208 RRSSGRIVTVSSPAGDMPFPCLAAYGTSKAALALLMGNFSCELLPWGVKVSIIQPACF-K 266
Query: 952 ATSLYSPERIRAIATKMWEQVPETVRQDYGRKYFDEMVARMENFCNSGSTDTSPVINAVT 1131
S+ + ++ +P+ + Q YG Y + + + + + D SPV++A+T
Sbjct: 267 TESVKDVHQWEERKQQLLATLPQELLQAYGEDYIEHLNGQFLHSLSQALPDLSPVVDAIT 326
Query: 1132 HALTSTTPYTRYHP 1173
AL + P RY+P
Sbjct: 327 DALLAAQPLRRYYP 340
>ref|NP_777158.1| dehydrogenase/reductase SDR family member 9 precursor [Bos taurus].
Length = 319
Score = 103 bits (258), Expect = 2e-22
Identities = 58/147 (39%), Positives = 86/147 (58%), Gaps = 1/147 (0%)
Frame = +2
Query: 380 VGSKAVLVTGCDSGFGFSLAKHLHSKGFLVFAGCLMKDKGHDGVKELDSLKSDRLRTVQL 559
+ K + +TGCD+GFG A+ KGF V A CL + G L + S+RL TV L
Sbjct: 27 ITDKYIFITGCDTGFGNLAARTFDKKGFHVIAACLTES----GSTALKAETSERLHTVLL 82
Query: 560 NXXXXXXXXXXXXTIRSSLQDPEKGLWGLVNNAGI-STFGDVEFTSMETYKEVAEVNLWG 736
+ +++ Q EKGLWGL+NNAGI ++ ++E Y+E EVNL+G
Sbjct: 83 DVTDPENVKRAAQWVKN--QVGEKGLWGLINNAGILGVLAPNDWLTVEDYREPVEVNLFG 140
Query: 737 TVRVTKSFLPLIRRAKGRVVNISSIMG 817
+ VT + LPL+++A+GR++N+SSI G
Sbjct: 141 LISVTLNMLPLVKKARGRIINVSSIGG 167
Score = 75.1 bits (183), Expect = 1e-13
Identities = 42/127 (33%), Positives = 66/127 (51%), Gaps = 9/127 (7%)
Frame = +1
Query: 814 GRLANVSR---------SPYCITKFGVEAFSDCLRYEMHPLGVKVSVVEPGNFIVATSLY 966
GR+ NVS Y +K+ VE F+D LR +M GV V+ +EPG F T+L
Sbjct: 157 GRIINVSSIGGRLAFGGGGYSPSKYAVEGFNDSLRRDMKAFGVHVACIEPGLF--KTNLS 214
Query: 967 SPERIRAIATKMWEQVPETVRQDYGRKYFDEMVARMENFCNSGSTDTSPVINAVTHALTS 1146
PE+ +W+ + ++Q YG Y ++ + +++ + + D S V+ + HALTS
Sbjct: 215 DPEKTAEKKLAIWKHLSPDIKQQYGESYIEKSLEQLKGTASFVNVDLSLVVECMDHALTS 274
Query: 1147 TTPYTRY 1167
P TRY
Sbjct: 275 LFPKTRY 281
>ref|NP_001077206.1| short-chain dehydrogenase/reductase family 9C member 7 [Bos taurus].
Length = 313
Score = 97.1 bits (240), Expect = 3e-20
Identities = 50/129 (38%), Positives = 74/129 (57%), Gaps = 9/129 (6%)
Frame = +1
Query: 814 GRLANVSRSP---------YCITKFGVEAFSDCLRYEMHPLGVKVSVVEPGNFIVATSLY 966
GR+ N+S S YCI+KFGVEAFSD +R E+H GVKVS++EPGNF T++
Sbjct: 153 GRVVNMSSSGGRVAVIGGGYCISKFGVEAFSDSIRRELHYFGVKVSIIEPGNF--RTAIL 210
Query: 967 SPERIRAIATKMWEQVPETVRQDYGRKYFDEMVARMENFCNSGSTDTSPVINAVTHALTS 1146
+ + K+WE++P R+ YG +YF +++ S V N++ HA+ S
Sbjct: 211 GKDGLEKHMRKLWERLPPETRESYGEEYFRIYTDNLKSTMQLADPRISEVTNSMEHAIVS 270
Query: 1147 TTPYTRYHP 1173
+P RY+P
Sbjct: 271 RSPRIRYNP 279
Score = 94.7 bits (234), Expect = 1e-19
Identities = 58/150 (38%), Positives = 83/150 (55%), Gaps = 1/150 (0%)
Frame = +2
Query: 371 VNPVGSKAVLVTGCDSGFGFSLAKHLHSKGFLVFAGCLMKDKGHDGVKELDSLKSDRLRT 550
V + K V +TGCDSGFG LA+ L +G V A C K+ G ++L S +L+T
Sbjct: 20 VRNLSDKYVFITGCDSGFGNLLARQLVDRGMRVLAACFTKE----GAQKLQQDTSYQLQT 75
Query: 551 VQLNXXXXXXXXXXXXTIRSSLQDPEKGLWGLVNNAGIST-FGDVEFTSMETYKEVAEVN 727
+ L+ +R Q E+GLW LVNNAG+ G E+ + E + +V VN
Sbjct: 76 ILLDVTKTESIKAATQWVRD--QVGEQGLWALVNNAGVGLPSGPNEWLTKEDFVKVINVN 133
Query: 728 LWGTVRVTKSFLPLIRRAKGRVVNISSIMG 817
L G + VT LP++++A+GRVVN+SS G
Sbjct: 134 LVGLIEVTLHMLPMVKKARGRVVNMSSSGG 163
>ref|XP_002702202.1| PREDICTED: dehydrogenase/reductase SDR family member 7B-like [Bos
taurus].
Length = 325
Score = 58.9 bits (141), Expect(2) = 6e-14
Identities = 49/152 (32%), Positives = 72/152 (47%), Gaps = 6/152 (3%)
Frame = +2
Query: 380 VGSKAVLVTGCDSGFGFSLAKHLHSKGFLVFAGCLMKDKGHDGVKELDS-LKSDRLRTVQ 556
V + V++TG SG G A+ H+ G A ++ + + ++EL L + R VQ
Sbjct: 50 VRNAVVVITGATSGLGRECARVFHAAG----ARLVLCGRNAEALEELSQELAASRAPEVQ 105
Query: 557 LNXXXXXXXXXXXXTIRSSLQDPEKGLWG----LVNNAGISTFGDVEFTSMETYKEVAEV 724
+ + +G L+NNAGIS G + TS + K V E
Sbjct: 106 THKPCTVTFDLADPGAIAGAASEILQCFGHVDVLINNAGISYRGAIVDTSPDVDKRVMET 165
Query: 725 NLWGTVRVTKSFLP-LIRRAKGRVVNISSIMG 817
N +G V +TK+ LP +IRR +G VV ISSI G
Sbjct: 166 NYFGPVALTKALLPAMIRRRQGHVVAISSIQG 197
Score = 37.4 bits (85), Expect(2) = 6e-14
Identities = 16/42 (38%), Positives = 26/42 (61%)
Frame = +1
Query: 814 GRLANVSRSPYCITKFGVEAFSDCLRYEMHPLGVKVSVVEPG 939
G+++ RS Y +K +AF DCLR E+ ++V+V+ PG
Sbjct: 197 GKISLPFRSAYAASKHATQAFFDCLRAEVEQHDIEVTVISPG 238
>ref|NP_001030420.1| dehydrogenase/reductase SDR family member 7B [Bos taurus].
Length = 325
Score = 58.5 bits (140), Expect(2) = 7e-14
Identities = 49/152 (32%), Positives = 72/152 (47%), Gaps = 6/152 (3%)
Frame = +2
Query: 380 VGSKAVLVTGCDSGFGFSLAKHLHSKGFLVFAGCLMKDKGHDGVKELDS-LKSDRLRTVQ 556
V + V++TG SG G A+ H+ G A ++ + + ++EL L + R VQ
Sbjct: 50 VRNAVVVITGATSGLGRECARVFHAAG----ARLVLCGRNAEALEELSQELAASRAPGVQ 105
Query: 557 LNXXXXXXXXXXXXTIRSSLQDPEKGLWG----LVNNAGISTFGDVEFTSMETYKEVAEV 724
+ + +G L+NNAGIS G + TS + K V E
Sbjct: 106 THKPCTVTFDLADPGAIAGAASEILQCFGHVDVLINNAGISYRGAIVDTSPDVDKRVMET 165
Query: 725 NLWGTVRVTKSFLP-LIRRAKGRVVNISSIMG 817
N +G V +TK+ LP +IRR +G VV ISSI G
Sbjct: 166 NYFGPVALTKALLPAMIRRRQGHVVAISSIQG 197
Score = 37.4 bits (85), Expect(2) = 7e-14
Identities = 16/42 (38%), Positives = 26/42 (61%)
Frame = +1
Query: 814 GRLANVSRSPYCITKFGVEAFSDCLRYEMHPLGVKVSVVEPG 939
G+++ RS Y +K +AF DCLR E+ ++V+V+ PG
Sbjct: 197 GKISLPFRSAYAASKHATQAFFDCLRAEVEQHDIEVTVISPG 238
Database: RefSeq44_BP.fasta
Posted date: Nov 15, 2010 4:36 PM
Number of letters in database: 18,071,151
Number of sequences in database: 33,615
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33615
Number of Hits to DB: 45,822,809
Number of extensions: 1273669
Number of successful extensions: 4678
Number of sequences better than 1.0e-05: 16
Number of HSP's gapped: 4628
Number of HSP's successfully gapped: 30
Length of query: 393
Length of database: 18,071,151
Length adjustment: 104
Effective length of query: 289
Effective length of database: 14,575,191
Effective search space: 4212230199
Effective search space used: 4212230199
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqCP_Rel44
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20070806C-003702
(1181 letters)
Database: RefSeq44_CP.fasta
33,359 sequences; 18,921,627 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_545160.2| PREDICTED: similar to 3-hydroxybutyrate dehydro... 243 e-123
Alignment gi|XP_545513.2| PREDICTED: similar to NADP-dependent retinol de... 103 2e-38
Alignment gi|XP_853935.1| PREDICTED: similar to Corticosteroid 11-beta-de... 87 1e-27
Alignment gi|XP_546810.2| PREDICTED: similar to hydroxysteroid (17-beta) ... 116 5e-26
Alignment gi|XP_538239.2| PREDICTED: similar to 3-hydroxysteroid epimeras... 108 1e-23
Alignment gi|XP_858059.1| PREDICTED: similar to 3-hydroxysteroid epimeras... 108 1e-23
Alignment gi|XP_858182.1| PREDICTED: similar to microsomal NAD+-dependent... 106 5e-23
Alignment gi|XP_531641.2| PREDICTED: similar to microsomal NAD+-dependent... 106 5e-23
Alignment gi|XP_538240.2| PREDICTED: similar to orphan short-chain dehydr... 101 1e-21
Alignment gi|XP_538220.2| PREDICTED: similar to 11-cis retinol dehydrogen... 96 9e-20
>ref|XP_545160.2| PREDICTED: similar to 3-hydroxybutyrate dehydrogenase precursor
[Canis familiaris].
Length = 299
Score = 243 bits (620), Expect(2) = e-123
Identities = 118/146 (80%), Positives = 131/146 (89%)
Frame = +2
Query: 380 VGSKAVLVTGCDSGFGFSLAKHLHSKGFLVFAGCLMKDKGHDGVKELDSLKSDRLRTVQL 559
VGSKAVLVTGCDSGFGFSLAKHLHSKGFLVFAGCLMKD+G DGVKELD LKSDRLRT+QL
Sbjct: 9 VGSKAVLVTGCDSGFGFSLAKHLHSKGFLVFAGCLMKDQGGDGVKELDGLKSDRLRTIQL 68
Query: 560 NXXXXXXXXXXXXTIRSSLQDPEKGLWGLVNNAGISTFGDVEFTSMETYKEVAEVNLWGT 739
N +RSSL+DPEKG+WGLVNNAGISTFG+VEFTSMETYKEVAEVNLWGT
Sbjct: 69 NVCKGEEVERVVEVVRSSLEDPEKGMWGLVNNAGISTFGEVEFTSMETYKEVAEVNLWGT 128
Query: 740 VRVTKSFLPLIRRAKGRVVNISSIMG 817
V++TK+FLPLIRRA+GR+VNISS++G
Sbjct: 129 VQMTKAFLPLIRRARGRIVNISSMLG 154
Score = 217 bits (553), Expect(2) = e-123
Identities = 99/122 (81%), Positives = 114/122 (93%)
Frame = +1
Query: 814 GRLANVSRSPYCITKFGVEAFSDCLRYEMHPLGVKVSVVEPGNFIVATSLYSPERIRAIA 993
GR+AN +RSPYCITKFGVEAFSDCLRYEM+PLGVKVSVVEPGNFI ATSLY+PERI+AIA
Sbjct: 154 GRMANPARSPYCITKFGVEAFSDCLRYEMYPLGVKVSVVEPGNFIAATSLYNPERIQAIA 213
Query: 994 TKMWEQVPETVRQDYGRKYFDEMVARMENFCNSGSTDTSPVINAVTHALTSTTPYTRYHP 1173
KMW+++PE VR+DYGRKYFDE +ARM+ +CNSGSTD SPV++AVTHALTS +PYTRYHP
Sbjct: 214 DKMWDELPEVVRKDYGRKYFDEKIARMQAYCNSGSTDISPVVSAVTHALTSRSPYTRYHP 273
Query: 1174 MD 1179
MD
Sbjct: 274 MD 275
>ref|XP_545513.2| PREDICTED: similar to NADP-dependent retinol
dehydrogenase/reductase [Canis familiaris].
Length = 753
Score = 103 bits (256), Expect(2) = 2e-38
Identities = 56/147 (38%), Positives = 86/147 (58%), Gaps = 1/147 (0%)
Frame = +2
Query: 380 VGSKAVLVTGCDSGFGFSLAKHLHSKGFLVFAGCLMKDKGHDGVKELDSLKSDRLRTVQL 559
+ K + +TGCD+GFG A+ KGF V A CL + + L + S+RL TV L
Sbjct: 461 ITDKYIFITGCDTGFGNLAARTFDKKGFHVIAACLTESES----TALKAETSERLHTVLL 516
Query: 560 NXXXXXXXXXXXXTIRSSLQDPEKGLWGLVNNAGI-STFGDVEFTSMETYKEVAEVNLWG 736
+ +++ Q EKGLWGL+NNAG+ ++ ++E Y+E EVNL+G
Sbjct: 517 DVTDPENVKRTAQWVKN--QVGEKGLWGLINNAGVLGVLAPTDWLTVEDYREPIEVNLFG 574
Query: 737 TVRVTKSFLPLIRRAKGRVVNISSIMG 817
+ VT + LPL+++A+GR++N+SSI G
Sbjct: 575 LISVTLNLLPLVKKARGRIINVSSIGG 601
Score = 75.5 bits (184), Expect(2) = 2e-38
Identities = 42/118 (35%), Positives = 65/118 (55%)
Frame = +1
Query: 814 GRLANVSRSPYCITKFGVEAFSDCLRYEMHPLGVKVSVVEPGNFIVATSLYSPERIRAIA 993
GRLA +S Y +K+ VE F+D LR +M GV VS +EPG F T L P +
Sbjct: 601 GRLA-ISGGGYTPSKYAVEGFNDSLRRDMKAFGVHVSCIEPGLF--KTGLSDPIKATEKK 657
Query: 994 TKMWEQVPETVRQDYGRKYFDEMVARMENFCNSGSTDTSPVINAVTHALTSTTPYTRY 1167
+W+ + ++Q YG Y ++ + ++++ + + D S V+ + HALTS P TRY
Sbjct: 658 LAIWKHLSPDIKQQYGESYIEKSLDKLKDTTSFVNVDLSLVVECMDHALTSLFPKTRY 715
>ref|XP_853935.1| PREDICTED: similar to Corticosteroid 11-beta-dehydrogenase, isozyme
2 (11-DH2) (11-beta-hydroxysteroid dehydrogenase type 2)
(11-beta-HSD2) (NAD-dependent 11-beta-hydroxysteroid
dehydrogenase) [Canis familiaris].
Length = 323
Score = 87.4 bits (215), Expect(2) = 1e-27
Identities = 54/140 (38%), Positives = 74/140 (52%), Gaps = 1/140 (0%)
Frame = +2
Query: 410 CDSGFGFSLAKHLHSKGFLVFAGCLMKDKGHDGVKELDSLKSDRLRTVQLNXXXXXXXXX 589
CDSGFG AK L + GF V A L D G EL + S RLR +Q++
Sbjct: 8 CDSGFGKETAKKLDAMGFTVLATVLELDG--PGALELRACCSPRLRLLQMDLTKPADISR 65
Query: 590 XXXTIRSSLQDPEKGLWGLVNNAGIS-TFGDVEFTSMETYKEVAEVNLWGTVRVTKSFLP 766
++ GLWGLVNNAG + DVE + + T++ EVN +G + +TK LP
Sbjct: 66 ALEFTKAHTSST--GLWGLVNNAGHNDVVADVELSPVATFRSCMEVNFFGALELTKGLLP 123
Query: 767 LIRRAKGRVVNISSIMGAWP 826
L+RR++GR+V + S G P
Sbjct: 124 LLRRSRGRIVTVGSPAGDMP 143
Score = 55.5 bits (132), Expect(2) = 1e-27
Identities = 36/118 (30%), Positives = 54/118 (45%), Gaps = 8/118 (6%)
Frame = +1
Query: 844 YCITKFGVEAFSDCLRYEMHPLGVKVSVVEPGNFIVATSLYSPERIRAIATKMWEQ---- 1011
Y +K + D E+ P GVKVSV++PG F E +R + WEQ
Sbjct: 150 YGTSKAAMALLMDTFSCELLPWGVKVSVIQPGCF-------KTESVRNVGH--WEQRKQL 200
Query: 1012 ----VPETVRQDYGRKYFDEMVARMENFCNSGSTDTSPVINAVTHALTSTTPYTRYHP 1173
+P + Q YG Y + + + + D SPV++A+T AL + P RY+P
Sbjct: 201 LLASLPRELLQAYGEDYIEHLHGQFLHSLRLALPDLSPVVDAITDALLAAQPRRRYYP 258
>ref|XP_546810.2| PREDICTED: similar to hydroxysteroid (17-beta) dehydrogenase 2
[Canis familiaris].
Length = 382
Score = 116 bits (290), Expect = 5e-26
Identities = 69/152 (45%), Positives = 89/152 (58%), Gaps = 1/152 (0%)
Frame = +2
Query: 377 PVGSKAVLVTGCDSGFGFSLAKHLHSKGFLVFAGCLMKDKGHDGVKELDSLKSDRLRTVQ 556
PV KAVL+TG DSGFG +L+K+L GF VF G L D+ G +EL S RL +Q
Sbjct: 80 PVDQKAVLITGGDSGFGHALSKYLDELGFTVFVGVL--DEKGSGAEELRRTCSKRLSVLQ 137
Query: 557 LNXXXXXXXXXXXXTIRSSLQDPEKGLWGLVNNAGISTF-GDVEFTSMETYKEVAEVNLW 733
++ + LQD +GLW +VNNAGI D E M YK+ VN +
Sbjct: 138 MDITDQQQIKDAHSKVVEKLQD--RGLWAVVNNAGIICLPADGELIPMTDYKKCMAVNFF 195
Query: 734 GTVRVTKSFLPLIRRAKGRVVNISSIMGAWPM 829
G V VTK+FLPL+R++KGR+VNISS+ PM
Sbjct: 196 GAVEVTKAFLPLLRKSKGRLVNISSMAAGVPM 227
Score = 60.8 bits (146), Expect = 2e-09
Identities = 39/137 (28%), Positives = 67/137 (48%), Gaps = 13/137 (9%)
Frame = +1
Query: 802 QQHNGRLANVSR----------SPYCITKFGVEAFSDCLRYEMHPLGVKVSVVEPGNF-- 945
++ GRL N+S + Y +K + FS +R E+ GVKVSV++PG F
Sbjct: 209 RKSKGRLVNISSMAAGVPMEKLAAYSSSKAALTMFSAVMRQELSKWGVKVSVIQPGGFRT 268
Query: 946 -IVATSLYSPERIRAIATKMWEQVPETVRQDYGRKYFDEMVARMENFCNSGSTDTSPVIN 1122
I TS E + + + + V +DYG+ Y + +++ +TD SPV+
Sbjct: 269 NIAGTS----EMWSKLEKNILDHLSSDVEEDYGKDYILQQRNYLKSINIKTNTDISPVLQ 324
Query: 1123 AVTHALTSTTPYTRYHP 1173
+ HA+++ +P+ Y P
Sbjct: 325 DIRHAVSAKSPFAFYAP 341
>ref|XP_538239.2| PREDICTED: similar to 3-hydroxysteroid epimerase isoform 3 [Canis
familiaris].
Length = 317
Score = 108 bits (269), Expect = 1e-23
Identities = 66/150 (44%), Positives = 88/150 (58%), Gaps = 1/150 (0%)
Frame = +2
Query: 371 VNPVGSKAVLVTGCDSGFGFSLAKHLHSKGFLVFAGCLMKDKGHDGVKELDSLKSDRLRT 550
V+ + K V +TGCDSGFG LA+ L +G V A CL + G ++L S SDRL T
Sbjct: 24 VSHLHDKYVFITGCDSGFGNLLARQLDLRGLRVLAACLTEK----GAQQLRSQTSDRLDT 79
Query: 551 VQLNXXXXXXXXXXXXTIRSSLQDPEKGLWGLVNNAGI-STFGDVEFTSMETYKEVAEVN 727
V L+ + + D +GLWGLVNNAGI E+ +E Y +V +VN
Sbjct: 80 VILDVTKTESILAATQWVEERVGD--RGLWGLVNNAGIFHPHCYSEWLKIEAYVDVFKVN 137
Query: 728 LWGTVRVTKSFLPLIRRAKGRVVNISSIMG 817
L G + VT S LPL+RRA+GR+VN+SSI+G
Sbjct: 138 LTGLIEVTLSMLPLLRRARGRIVNVSSILG 167
Score = 84.7 bits (208), Expect = 2e-16
Identities = 50/129 (38%), Positives = 73/129 (56%), Gaps = 11/129 (8%)
Frame = +1
Query: 814 GRLANVSR---------SPYCITKFGVEAFSDCLRYEMHPLGVKVSVVEPGNFIVATS-- 960
GR+ NVS YC +K+GVEAFSD LR E+ GVK+S+VEPG F +
Sbjct: 157 GRIVNVSSILGRLAFFGGAYCSSKYGVEAFSDTLRRELRHFGVKISIVEPGYFRTGMTHV 216
Query: 961 LYSPERIRAIATKMWEQVPETVRQDYGRKYFDEMVARMENFCNSGSTDTSPVINAVTHAL 1140
+ ER++ + WE+VP +++ YG+K+FD ++ ST+ + V + + HAL
Sbjct: 217 AWCLERLK----QAWEEVPTHIKEAYGQKFFDAHHNGVKQGLLKCSTNLNLVTDCMEHAL 272
Query: 1141 TSTTPYTRY 1167
TS P TRY
Sbjct: 273 TSVHPRTRY 281
>ref|XP_858059.1| PREDICTED: similar to 3-hydroxysteroid epimerase isoform 4 [Canis
familiaris].
Length = 323
Score = 108 bits (269), Expect = 1e-23
Identities = 66/150 (44%), Positives = 88/150 (58%), Gaps = 1/150 (0%)
Frame = +2
Query: 371 VNPVGSKAVLVTGCDSGFGFSLAKHLHSKGFLVFAGCLMKDKGHDGVKELDSLKSDRLRT 550
V+ + K V +TGCDSGFG LA+ L +G V A CL + G ++L S SDRL T
Sbjct: 24 VSHLHDKYVFITGCDSGFGNLLARQLDLRGLRVLAACLTEK----GAQQLRSQTSDRLDT 79
Query: 551 VQLNXXXXXXXXXXXXTIRSSLQDPEKGLWGLVNNAGI-STFGDVEFTSMETYKEVAEVN 727
V L+ + + D +GLWGLVNNAGI E+ +E Y +V +VN
Sbjct: 80 VILDVTKTESILAATQWVEERVGD--RGLWGLVNNAGIFHPHCYSEWLKIEAYVDVFKVN 137
Query: 728 LWGTVRVTKSFLPLIRRAKGRVVNISSIMG 817
L G + VT S LPL+RRA+GR+VN+SSI+G
Sbjct: 138 LTGLIEVTLSMLPLLRRARGRIVNVSSILG 167
Score = 79.3 bits (194), Expect = 6e-15
Identities = 51/135 (37%), Positives = 73/135 (54%), Gaps = 17/135 (12%)
Frame = +1
Query: 814 GRLANVSR---------SPYCITKFGVEAFSDCLRYEMHPLGVKVSVVEPGNFIVATS-- 960
GR+ NVS YC +K+GVEAFSD LR E+ GVK+S+VEPG F +
Sbjct: 157 GRIVNVSSILGRLAFFGGAYCSSKYGVEAFSDTLRRELRHFGVKISIVEPGYFRTGMTHV 216
Query: 961 LYSPERIRAIATKMWEQVPETVRQDYGRKYFDEMVARM--ENFCNSG----STDTSPVIN 1122
+ ER++ + WE+VP +++ YG+K+F + N G ST+ + V +
Sbjct: 217 AWCLERLK----QAWEEVPTHIKEAYGQKFFASFLFLYTDHNGVKQGLLKCSTNLNLVTD 272
Query: 1123 AVTHALTSTTPYTRY 1167
+ HALTS P TRY
Sbjct: 273 CMEHALTSVHPRTRY 287
>ref|XP_858182.1| PREDICTED: similar to microsomal NAD+-dependent retinol
dehydrogenase 4 isoform 2 [Canis familiaris].
Length = 319
Score = 106 bits (264), Expect = 5e-23
Identities = 65/150 (43%), Positives = 88/150 (58%), Gaps = 1/150 (0%)
Frame = +2
Query: 371 VNPVGSKAVLVTGCDSGFGFSLAKHLHSKGFLVFAGCLMKDKGHDGVKELDSLKSDRLRT 550
V+ + K V +TGCDSGFG LA+ L +G V A CL + G ++L S SDRL T
Sbjct: 24 VSHLQDKYVFITGCDSGFGNLLARQLDLRGLRVLAACLTEK----GAQQLRSQTSDRLDT 79
Query: 551 VQLNXXXXXXXXXXXXTIRSSLQDPEKGLWGLVNNAGIS-TFGDVEFTSMETYKEVAEVN 727
V L+ + + D +GLWGLVNNAGIS E+ + + + ++ +VN
Sbjct: 80 VILDVTKTESILAATQWVEEHVGD--RGLWGLVNNAGISWPTAPNEWLTKDDFMKILDVN 137
Query: 728 LWGTVRVTKSFLPLIRRAKGRVVNISSIMG 817
L G V VT S L L+R+A+GRVVN+SSIMG
Sbjct: 138 LLGLVEVTLSLLSLVRKARGRVVNVSSIMG 167
Score = 80.9 bits (198), Expect = 2e-15
Identities = 51/131 (38%), Positives = 74/131 (56%), Gaps = 11/131 (8%)
Frame = +1
Query: 814 GRLANVSR---------SPYCITKFGVEAFSDCLRYEMHPLGVKVSVVEPGNFIVATSLY 966
GR+ NVS YCI+K+GVEAFSD LR E+ GVKV+V+EPG F +T++
Sbjct: 157 GRVVNVSSIMGRLSLCGGGYCISKYGVEAFSDSLRRELTYFGVKVAVIEPGYF--STNVT 214
Query: 967 SPERIRAIATKMWEQVPETVRQDYGRKY--FDEMVARMENFCNSGSTDTSPVINAVTHAL 1140
+PE+I + W+++ VR+ YG ++ +A E + T+ V N + HAL
Sbjct: 215 NPEKISRGFQETWDRLSPEVREAYGEEHARTPGKLAVKELLKSMCDTNLYLVTNCMEHAL 274
Query: 1141 TSTTPYTRYHP 1173
T+ P TRY P
Sbjct: 275 TACHPRTRYSP 285
>ref|XP_531641.2| PREDICTED: similar to microsomal NAD+-dependent retinol
dehydrogenase 4 isoform 1 [Canis familiaris].
Length = 317
Score = 106 bits (264), Expect = 5e-23
Identities = 65/150 (43%), Positives = 88/150 (58%), Gaps = 1/150 (0%)
Frame = +2
Query: 371 VNPVGSKAVLVTGCDSGFGFSLAKHLHSKGFLVFAGCLMKDKGHDGVKELDSLKSDRLRT 550
V+ + K V +TGCDSGFG LA+ L +G V A CL + G ++L S SDRL T
Sbjct: 24 VSHLQDKYVFITGCDSGFGNLLARQLDLRGLRVLAACLTEK----GAQQLRSQTSDRLDT 79
Query: 551 VQLNXXXXXXXXXXXXTIRSSLQDPEKGLWGLVNNAGIS-TFGDVEFTSMETYKEVAEVN 727
V L+ + + D +GLWGLVNNAGIS E+ + + + ++ +VN
Sbjct: 80 VILDVTKTESILAATQWVEEHVGD--RGLWGLVNNAGISWPTAPNEWLTKDDFMKILDVN 137
Query: 728 LWGTVRVTKSFLPLIRRAKGRVVNISSIMG 817
L G V VT S L L+R+A+GRVVN+SSIMG
Sbjct: 138 LLGLVEVTLSLLSLVRKARGRVVNVSSIMG 167
Score = 86.3 bits (212), Expect = 5e-17
Identities = 50/129 (38%), Positives = 73/129 (56%), Gaps = 9/129 (6%)
Frame = +1
Query: 814 GRLANVSR---------SPYCITKFGVEAFSDCLRYEMHPLGVKVSVVEPGNFIVATSLY 966
GR+ NVS YCI+K+GVEAFSD LR E+ GVKV+V+EPG F +T++
Sbjct: 157 GRVVNVSSIMGRLSLCGGGYCISKYGVEAFSDSLRRELTYFGVKVAVIEPGYF--STNVT 214
Query: 967 SPERIRAIATKMWEQVPETVRQDYGRKYFDEMVARMENFCNSGSTDTSPVINAVTHALTS 1146
+PE+I + W+++ VR+ YG ++ +E + T+ V N + HALT+
Sbjct: 215 NPEKISRGFQETWDRLSPEVREAYGEEFLASARKPIEKLKSMCDTNLYLVTNCMEHALTA 274
Query: 1147 TTPYTRYHP 1173
P TRY P
Sbjct: 275 CHPRTRYSP 283
>ref|XP_538240.2| PREDICTED: similar to orphan short-chain dehydrogenase / reductase
[Canis familiaris].
Length = 313
Score = 101 bits (252), Expect = 1e-21
Identities = 50/129 (38%), Positives = 76/129 (58%), Gaps = 9/129 (6%)
Frame = +1
Query: 814 GRLANVSRSP---------YCITKFGVEAFSDCLRYEMHPLGVKVSVVEPGNFIVATSLY 966
GR+ N+S S YC++KFGVEAFSD +R E+H GVKVS++EPGN+ TS+
Sbjct: 153 GRVVNMSSSGGRVALIGGGYCVSKFGVEAFSDSIRRELHYFGVKVSIIEPGNY--RTSIL 210
Query: 967 SPERIRAIATKMWEQVPETVRQDYGRKYFDEMVARMENFCNSGSTDTSPVINAVTHALTS 1146
E + + K+WE++P+ + YG +YF +++N S V N++ HA+ S
Sbjct: 211 GKEDMVSRMRKLWERLPQETKDSYGEEYFRNYTDKLKNMMQSAEPRIREVTNSMEHAIVS 270
Query: 1147 TTPYTRYHP 1173
+P RY+P
Sbjct: 271 RSPRVRYNP 279
Score = 94.0 bits (232), Expect = 3e-19
Identities = 59/150 (39%), Positives = 83/150 (55%), Gaps = 1/150 (0%)
Frame = +2
Query: 371 VNPVGSKAVLVTGCDSGFGFSLAKHLHSKGFLVFAGCLMKDKGHDGVKELDSLKSDRLRT 550
V + K V +TGCDSGFG LA+ L ++G V A C ++ G ++L S RL+T
Sbjct: 20 VRNLSDKYVFITGCDSGFGNLLARQLVNRGMRVLAACFTEE----GAQKLQRDTSYRLQT 75
Query: 551 VQLNXXXXXXXXXXXXTIRSSLQDPEKGLWGLVNNAGIST-FGDVEFTSMETYKEVAEVN 727
L+ +R Q E+GLW LVNNAGI G E+ + E + +V VN
Sbjct: 76 TLLDVTRTESIQAATQWVRD--QVGEQGLWALVNNAGIGLPSGPNEWLTKEDFVKVINVN 133
Query: 728 LWGTVRVTKSFLPLIRRAKGRVVNISSIMG 817
L G + VT LP++++A+GRVVN+SS G
Sbjct: 134 LVGLIEVTLHMLPMVKKARGRVVNMSSSGG 163
>ref|XP_538220.2| PREDICTED: similar to 11-cis retinol dehydrogenase (11-cis RDH)
[Canis familiaris].
Length = 339
Score = 95.5 bits (236), Expect = 9e-20
Identities = 56/148 (37%), Positives = 81/148 (54%), Gaps = 1/148 (0%)
Frame = +2
Query: 377 PVGSKAVLVTGCDSGFGFSLAKHLHSKGFLVFAGCLMKDKGHDGVKELDSLKSDRLRTVQ 556
P V +TGCDSGFG LA L +GF V A CL G ++L + S RL T
Sbjct: 46 PASDAFVFITGCDSGFGRLLALRLDQRGFRVLASCLTPA----GAEDLQRVASSRLHTTL 101
Query: 557 LNXXXXXXXXXXXXTIRSSLQDPEKGLWGLVNNAGIS-TFGDVEFTSMETYKEVAEVNLW 733
L+ + + + E GL+GLVNNAG++ G + + + + V VN
Sbjct: 102 LDVTEPQSVQRAAKWVETHVG--EAGLFGLVNNAGVAGIIGPTPWLTQDDFHRVLNVNTL 159
Query: 734 GTVRVTKSFLPLIRRAKGRVVNISSIMG 817
G +RVT + LPL+++++GRVVNISS++G
Sbjct: 160 GPIRVTLALLPLLQQSRGRVVNISSVLG 187
Score = 76.3 bits (186), Expect = 5e-14
Identities = 48/137 (35%), Positives = 69/137 (50%), Gaps = 13/137 (9%)
Frame = +1
Query: 802 QQHNGRLANVSR---------SPYCITKFGVEAFSDCLRYEMHPLGVKVSVVEPGNFIVA 954
QQ GR+ N+S YC++KFG+EAFSD LR ++ GV+VS+VEPG F
Sbjct: 173 QQSRGRVVNISSVLGRLAANGGGYCVSKFGLEAFSDSLRRDVAHFGVRVSIVEPGFF--R 230
Query: 955 TSLYSPERIRAIATKMWEQVPETVRQDYGR----KYFDEMVARMENFCNSGSTDTSPVIN 1122
T + + E + + W ++P + + YG KY M C+ D + V
Sbjct: 231 TPVTNLEHLENTLQECWARLPPSTQAHYGEAFLPKYLQVQQHIMSLICD---PDLTKVSR 287
Query: 1123 AVTHALTSTTPYTRYHP 1173
+ HALT+ P TRY P
Sbjct: 288 CLEHALTARYPRTRYSP 304
Database: RefSeq44_CP.fasta
Posted date: Nov 15, 2010 4:36 PM
Number of letters in database: 18,921,627
Number of sequences in database: 33,359
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33359
Number of Hits to DB: 47,047,793
Number of extensions: 1294332
Number of successful extensions: 4810
Number of sequences better than 1.0e-05: 16
Number of HSP's gapped: 4762
Number of HSP's successfully gapped: 31
Length of query: 393
Length of database: 18,921,627
Length adjustment: 105
Effective length of query: 288
Effective length of database: 15,418,932
Effective search space: 4440652416
Effective search space used: 4440652416
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel44
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20070806C-003702
(1181 letters)
Database: RefSeq44_HP.fasta
33,950 sequences; 18,324,212 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_976059.1| D-beta-hydroxybutyrate dehydrogenase, mitochond... 305 e-142
Alignment gi|NP_976060.1| D-beta-hydroxybutyrate dehydrogenase, mitochond... 305 e-142
Alignment gi|NP_004042.1| D-beta-hydroxybutyrate dehydrogenase, mitochond... 305 e-142
Alignment gi|NP_954674.1| dehydrogenase/reductase SDR family member 9 [Ho... 108 1e-40
Alignment gi|NP_001135743.1| dehydrogenase/reductase SDR family member 9 ... 108 1e-40
Alignment gi|NP_001135742.1| dehydrogenase/reductase SDR family member 9 ... 108 1e-40
Alignment gi|NP_005762.2| dehydrogenase/reductase SDR family member 9 [Ho... 108 1e-40
Alignment gi|NP_000187.3| corticosteroid 11-beta-dehydrogenase isozyme 2 ... 99 9e-32
Alignment gi|NP_002144.1| estradiol 17-beta-dehydrogenase 2 [Homo sapiens]. 116 5e-26
Alignment gi|NP_003699.3| retinol dehydrogenase 16 [Homo sapiens]. 111 1e-24
>ref|NP_976059.1| D-beta-hydroxybutyrate dehydrogenase, mitochondrial precursor [Homo
sapiens].
Length = 343
Score = 305 bits (780), Expect(2) = e-142
Identities = 153/194 (78%), Positives = 167/194 (86%)
Frame = +2
Query: 236 RLSRPLSQLPRKTLNFSERENGARGSLLFYSPSFVPGSRRTYADSVNPVGSKAVLVTGCD 415
RLSRPLS+LP KTL+ +RENGAR LL S SF+P RRTYA + PVGSKAVLVTGCD
Sbjct: 5 RLSRPLSRLPGKTLSACDRENGARRPLLLGSTSFIPIGRRTYASAAEPVGSKAVLVTGCD 64
Query: 416 SGFGFSLAKHLHSKGFLVFAGCLMKDKGHDGVKELDSLKSDRLRTVQLNXXXXXXXXXXX 595
SGFGFSLAKHLHSKGFLVFAGCLMKDKGHDGVKELDSL SDRLRTVQLN
Sbjct: 65 SGFGFSLAKHLHSKGFLVFAGCLMKDKGHDGVKELDSLNSDRLRTVQLNVCSSEEVEKVV 124
Query: 596 XTIRSSLQDPEKGLWGLVNNAGISTFGDVEFTSMETYKEVAEVNLWGTVRVTKSFLPLIR 775
+RSSL+DPEKG+WGLVNNAGISTFG+VEFTS+ETYK+VAEVNLWGTVR+TKSFLPLIR
Sbjct: 125 EIVRSSLKDPEKGMWGLVNNAGISTFGEVEFTSLETYKQVAEVNLWGTVRMTKSFLPLIR 184
Query: 776 RAKGRVVNISSIMG 817
RAKGRVVNISS++G
Sbjct: 185 RAKGRVVNISSMLG 198
Score = 220 bits (561), Expect(2) = e-142
Identities = 101/122 (82%), Positives = 115/122 (94%)
Frame = +1
Query: 814 GRLANVSRSPYCITKFGVEAFSDCLRYEMHPLGVKVSVVEPGNFIVATSLYSPERIRAIA 993
GR+AN +RSPYCITKFGVEAFSDCLRYEM+PLGVKVSVVEPGNFI ATSLYSPE I+AIA
Sbjct: 198 GRMANPARSPYCITKFGVEAFSDCLRYEMYPLGVKVSVVEPGNFIAATSLYSPESIQAIA 257
Query: 994 TKMWEQVPETVRQDYGRKYFDEMVARMENFCNSGSTDTSPVINAVTHALTSTTPYTRYHP 1173
KMWE++PE VR+DYG+KYFDE +A+ME +C+SGSTDTSPVI+AVTHALT+TTPYTRYHP
Sbjct: 258 KKMWEELPEVVRKDYGKKYFDEKIAKMETYCSSGSTDTSPVIDAVTHALTATTPYTRYHP 317
Query: 1174 MD 1179
MD
Sbjct: 318 MD 319
>ref|NP_976060.1| D-beta-hydroxybutyrate dehydrogenase, mitochondrial precursor [Homo
sapiens].
Length = 343
Score = 305 bits (780), Expect(2) = e-142
Identities = 153/194 (78%), Positives = 167/194 (86%)
Frame = +2
Query: 236 RLSRPLSQLPRKTLNFSERENGARGSLLFYSPSFVPGSRRTYADSVNPVGSKAVLVTGCD 415
RLSRPLS+LP KTL+ +RENGAR LL S SF+P RRTYA + PVGSKAVLVTGCD
Sbjct: 5 RLSRPLSRLPGKTLSACDRENGARRPLLLGSTSFIPIGRRTYASAAEPVGSKAVLVTGCD 64
Query: 416 SGFGFSLAKHLHSKGFLVFAGCLMKDKGHDGVKELDSLKSDRLRTVQLNXXXXXXXXXXX 595
SGFGFSLAKHLHSKGFLVFAGCLMKDKGHDGVKELDSL SDRLRTVQLN
Sbjct: 65 SGFGFSLAKHLHSKGFLVFAGCLMKDKGHDGVKELDSLNSDRLRTVQLNVCSSEEVEKVV 124
Query: 596 XTIRSSLQDPEKGLWGLVNNAGISTFGDVEFTSMETYKEVAEVNLWGTVRVTKSFLPLIR 775
+RSSL+DPEKG+WGLVNNAGISTFG+VEFTS+ETYK+VAEVNLWGTVR+TKSFLPLIR
Sbjct: 125 EIVRSSLKDPEKGMWGLVNNAGISTFGEVEFTSLETYKQVAEVNLWGTVRMTKSFLPLIR 184
Query: 776 RAKGRVVNISSIMG 817
RAKGRVVNISS++G
Sbjct: 185 RAKGRVVNISSMLG 198
Score = 220 bits (561), Expect(2) = e-142
Identities = 101/122 (82%), Positives = 115/122 (94%)
Frame = +1
Query: 814 GRLANVSRSPYCITKFGVEAFSDCLRYEMHPLGVKVSVVEPGNFIVATSLYSPERIRAIA 993
GR+AN +RSPYCITKFGVEAFSDCLRYEM+PLGVKVSVVEPGNFI ATSLYSPE I+AIA
Sbjct: 198 GRMANPARSPYCITKFGVEAFSDCLRYEMYPLGVKVSVVEPGNFIAATSLYSPESIQAIA 257
Query: 994 TKMWEQVPETVRQDYGRKYFDEMVARMENFCNSGSTDTSPVINAVTHALTSTTPYTRYHP 1173
KMWE++PE VR+DYG+KYFDE +A+ME +C+SGSTDTSPVI+AVTHALT+TTPYTRYHP
Sbjct: 258 KKMWEELPEVVRKDYGKKYFDEKIAKMETYCSSGSTDTSPVIDAVTHALTATTPYTRYHP 317
Query: 1174 MD 1179
MD
Sbjct: 318 MD 319
>ref|NP_004042.1| D-beta-hydroxybutyrate dehydrogenase, mitochondrial precursor [Homo
sapiens].
Length = 343
Score = 305 bits (780), Expect(2) = e-142
Identities = 153/194 (78%), Positives = 167/194 (86%)
Frame = +2
Query: 236 RLSRPLSQLPRKTLNFSERENGARGSLLFYSPSFVPGSRRTYADSVNPVGSKAVLVTGCD 415
RLSRPLS+LP KTL+ +RENGAR LL S SF+P RRTYA + PVGSKAVLVTGCD
Sbjct: 5 RLSRPLSRLPGKTLSACDRENGARRPLLLGSTSFIPIGRRTYASAAEPVGSKAVLVTGCD 64
Query: 416 SGFGFSLAKHLHSKGFLVFAGCLMKDKGHDGVKELDSLKSDRLRTVQLNXXXXXXXXXXX 595
SGFGFSLAKHLHSKGFLVFAGCLMKDKGHDGVKELDSL SDRLRTVQLN
Sbjct: 65 SGFGFSLAKHLHSKGFLVFAGCLMKDKGHDGVKELDSLNSDRLRTVQLNVCSSEEVEKVV 124
Query: 596 XTIRSSLQDPEKGLWGLVNNAGISTFGDVEFTSMETYKEVAEVNLWGTVRVTKSFLPLIR 775
+RSSL+DPEKG+WGLVNNAGISTFG+VEFTS+ETYK+VAEVNLWGTVR+TKSFLPLIR
Sbjct: 125 EIVRSSLKDPEKGMWGLVNNAGISTFGEVEFTSLETYKQVAEVNLWGTVRMTKSFLPLIR 184
Query: 776 RAKGRVVNISSIMG 817
RAKGRVVNISS++G
Sbjct: 185 RAKGRVVNISSMLG 198
Score = 220 bits (561), Expect(2) = e-142
Identities = 101/122 (82%), Positives = 115/122 (94%)
Frame = +1
Query: 814 GRLANVSRSPYCITKFGVEAFSDCLRYEMHPLGVKVSVVEPGNFIVATSLYSPERIRAIA 993
GR+AN +RSPYCITKFGVEAFSDCLRYEM+PLGVKVSVVEPGNFI ATSLYSPE I+AIA
Sbjct: 198 GRMANPARSPYCITKFGVEAFSDCLRYEMYPLGVKVSVVEPGNFIAATSLYSPESIQAIA 257
Query: 994 TKMWEQVPETVRQDYGRKYFDEMVARMENFCNSGSTDTSPVINAVTHALTSTTPYTRYHP 1173
KMWE++PE VR+DYG+KYFDE +A+ME +C+SGSTDTSPVI+AVTHALT+TTPYTRYHP
Sbjct: 258 KKMWEELPEVVRKDYGKKYFDEKIAKMETYCSSGSTDTSPVIDAVTHALTATTPYTRYHP 317
Query: 1174 MD 1179
MD
Sbjct: 318 MD 319
>ref|NP_954674.1| dehydrogenase/reductase SDR family member 9 [Homo sapiens].
Length = 319
Score = 108 bits (269), Expect(2) = 1e-40
Identities = 59/150 (39%), Positives = 88/150 (58%), Gaps = 1/150 (0%)
Frame = +2
Query: 371 VNPVGSKAVLVTGCDSGFGFSLAKHLHSKGFLVFAGCLMKDKGHDGVKELDSLKSDRLRT 550
+ + K + +TGCDSGFG A+ KGF V A CL + G L + S+RLRT
Sbjct: 24 IEDITDKYIFITGCDSGFGNLAARTFDKKGFHVIAACLTES----GSTALKAETSERLRT 79
Query: 551 VQLNXXXXXXXXXXXXTIRSSLQDPEKGLWGLVNNAGI-STFGDVEFTSMETYKEVAEVN 727
V L+ +++ Q EKGLWGL+NNAG+ ++ ++E Y+E EVN
Sbjct: 80 VLLDVTDPENVKRTAQWVKN--QVGEKGLWGLINNAGVPGVLAPTDWLTLEDYREPIEVN 137
Query: 728 LWGTVRVTKSFLPLIRRAKGRVVNISSIMG 817
L+G + VT + LPL+++A+GRV+N+SS+ G
Sbjct: 138 LFGLISVTLNMLPLVKKAQGRVINVSSVGG 167
Score = 78.2 bits (191), Expect(2) = 1e-40
Identities = 44/118 (37%), Positives = 66/118 (55%)
Frame = +1
Query: 814 GRLANVSRSPYCITKFGVEAFSDCLRYEMHPLGVKVSVVEPGNFIVATSLYSPERIRAIA 993
GRLA V Y +K+ VE F+D LR +M GV VS +EPG F T+L P ++
Sbjct: 167 GRLAIVGGG-YTPSKYAVEGFNDSLRRDMKAFGVHVSCIEPGLF--KTNLADPVKVIEKK 223
Query: 994 TKMWEQVPETVRQDYGRKYFDEMVARMENFCNSGSTDTSPVINAVTHALTSTTPYTRY 1167
+WEQ+ ++Q YG Y ++ + +++ + + D SPV+ + HALTS P T Y
Sbjct: 224 LAIWEQLSPDIKQQYGEGYIEKSLDKLKGNKSYVNMDLSPVVECMDHALTSLFPKTHY 281
>ref|NP_001135743.1| dehydrogenase/reductase SDR family member 9 [Homo sapiens].
Length = 319
Score = 108 bits (269), Expect(2) = 1e-40
Identities = 59/150 (39%), Positives = 88/150 (58%), Gaps = 1/150 (0%)
Frame = +2
Query: 371 VNPVGSKAVLVTGCDSGFGFSLAKHLHSKGFLVFAGCLMKDKGHDGVKELDSLKSDRLRT 550
+ + K + +TGCDSGFG A+ KGF V A CL + G L + S+RLRT
Sbjct: 24 IEDITDKYIFITGCDSGFGNLAARTFDKKGFHVIAACLTES----GSTALKAETSERLRT 79
Query: 551 VQLNXXXXXXXXXXXXTIRSSLQDPEKGLWGLVNNAGI-STFGDVEFTSMETYKEVAEVN 727
V L+ +++ Q EKGLWGL+NNAG+ ++ ++E Y+E EVN
Sbjct: 80 VLLDVTDPENVKRTAQWVKN--QVGEKGLWGLINNAGVPGVLAPTDWLTLEDYREPIEVN 137
Query: 728 LWGTVRVTKSFLPLIRRAKGRVVNISSIMG 817
L+G + VT + LPL+++A+GRV+N+SS+ G
Sbjct: 138 LFGLISVTLNMLPLVKKAQGRVINVSSVGG 167
Score = 78.2 bits (191), Expect(2) = 1e-40
Identities = 44/118 (37%), Positives = 66/118 (55%)
Frame = +1
Query: 814 GRLANVSRSPYCITKFGVEAFSDCLRYEMHPLGVKVSVVEPGNFIVATSLYSPERIRAIA 993
GRLA V Y +K+ VE F+D LR +M GV VS +EPG F T+L P ++
Sbjct: 167 GRLAIVGGG-YTPSKYAVEGFNDSLRRDMKAFGVHVSCIEPGLF--KTNLADPVKVIEKK 223
Query: 994 TKMWEQVPETVRQDYGRKYFDEMVARMENFCNSGSTDTSPVINAVTHALTSTTPYTRY 1167
+WEQ+ ++Q YG Y ++ + +++ + + D SPV+ + HALTS P T Y
Sbjct: 224 LAIWEQLSPDIKQQYGEGYIEKSLDKLKGNKSYVNMDLSPVVECMDHALTSLFPKTHY 281
>ref|NP_001135742.1| dehydrogenase/reductase SDR family member 9 [Homo sapiens].
Length = 319
Score = 108 bits (269), Expect(2) = 1e-40
Identities = 59/150 (39%), Positives = 88/150 (58%), Gaps = 1/150 (0%)
Frame = +2
Query: 371 VNPVGSKAVLVTGCDSGFGFSLAKHLHSKGFLVFAGCLMKDKGHDGVKELDSLKSDRLRT 550
+ + K + +TGCDSGFG A+ KGF V A CL + G L + S+RLRT
Sbjct: 24 IEDITDKYIFITGCDSGFGNLAARTFDKKGFHVIAACLTES----GSTALKAETSERLRT 79
Query: 551 VQLNXXXXXXXXXXXXTIRSSLQDPEKGLWGLVNNAGI-STFGDVEFTSMETYKEVAEVN 727
V L+ +++ Q EKGLWGL+NNAG+ ++ ++E Y+E EVN
Sbjct: 80 VLLDVTDPENVKRTAQWVKN--QVGEKGLWGLINNAGVPGVLAPTDWLTLEDYREPIEVN 137
Query: 728 LWGTVRVTKSFLPLIRRAKGRVVNISSIMG 817
L+G + VT + LPL+++A+GRV+N+SS+ G
Sbjct: 138 LFGLISVTLNMLPLVKKAQGRVINVSSVGG 167
Score = 78.2 bits (191), Expect(2) = 1e-40
Identities = 44/118 (37%), Positives = 66/118 (55%)
Frame = +1
Query: 814 GRLANVSRSPYCITKFGVEAFSDCLRYEMHPLGVKVSVVEPGNFIVATSLYSPERIRAIA 993
GRLA V Y +K+ VE F+D LR +M GV VS +EPG F T+L P ++
Sbjct: 167 GRLAIVGGG-YTPSKYAVEGFNDSLRRDMKAFGVHVSCIEPGLF--KTNLADPVKVIEKK 223
Query: 994 TKMWEQVPETVRQDYGRKYFDEMVARMENFCNSGSTDTSPVINAVTHALTSTTPYTRY 1167
+WEQ+ ++Q YG Y ++ + +++ + + D SPV+ + HALTS P T Y
Sbjct: 224 LAIWEQLSPDIKQQYGEGYIEKSLDKLKGNKSYVNMDLSPVVECMDHALTSLFPKTHY 281
>ref|NP_005762.2| dehydrogenase/reductase SDR family member 9 [Homo sapiens].
Length = 319
Score = 108 bits (269), Expect(2) = 1e-40
Identities = 59/150 (39%), Positives = 88/150 (58%), Gaps = 1/150 (0%)
Frame = +2
Query: 371 VNPVGSKAVLVTGCDSGFGFSLAKHLHSKGFLVFAGCLMKDKGHDGVKELDSLKSDRLRT 550
+ + K + +TGCDSGFG A+ KGF V A CL + G L + S+RLRT
Sbjct: 24 IEDITDKYIFITGCDSGFGNLAARTFDKKGFHVIAACLTES----GSTALKAETSERLRT 79
Query: 551 VQLNXXXXXXXXXXXXTIRSSLQDPEKGLWGLVNNAGI-STFGDVEFTSMETYKEVAEVN 727
V L+ +++ Q EKGLWGL+NNAG+ ++ ++E Y+E EVN
Sbjct: 80 VLLDVTDPENVKRTAQWVKN--QVGEKGLWGLINNAGVPGVLAPTDWLTLEDYREPIEVN 137
Query: 728 LWGTVRVTKSFLPLIRRAKGRVVNISSIMG 817
L+G + VT + LPL+++A+GRV+N+SS+ G
Sbjct: 138 LFGLISVTLNMLPLVKKAQGRVINVSSVGG 167
Score = 78.2 bits (191), Expect(2) = 1e-40
Identities = 44/118 (37%), Positives = 66/118 (55%)
Frame = +1
Query: 814 GRLANVSRSPYCITKFGVEAFSDCLRYEMHPLGVKVSVVEPGNFIVATSLYSPERIRAIA 993
GRLA V Y +K+ VE F+D LR +M GV VS +EPG F T+L P ++
Sbjct: 167 GRLAIVGGG-YTPSKYAVEGFNDSLRRDMKAFGVHVSCIEPGLF--KTNLADPVKVIEKK 223
Query: 994 TKMWEQVPETVRQDYGRKYFDEMVARMENFCNSGSTDTSPVINAVTHALTSTTPYTRY 1167
+WEQ+ ++Q YG Y ++ + +++ + + D SPV+ + HALTS P T Y
Sbjct: 224 LAIWEQLSPDIKQQYGEGYIEKSLDKLKGNKSYVNMDLSPVVECMDHALTSLFPKTHY 281
>ref|NP_000187.3| corticosteroid 11-beta-dehydrogenase isozyme 2 [Homo sapiens].
Length = 405
Score = 99.4 bits (246), Expect(2) = 9e-32
Identities = 59/151 (39%), Positives = 82/151 (54%), Gaps = 1/151 (0%)
Frame = +2
Query: 377 PVGSKAVLVTGCDSGFGFSLAKHLHSKGFLVFAGCLMKDKGHDGVKELDSLKSDRLRTVQ 556
PV ++AVL+TGCDSGFG AK L S GF V A L + G EL + S RLR +Q
Sbjct: 79 PVATRAVLITGCDSGFGKETAKKLDSMGFTVLATVL--ELNSPGAIELRTCCSPRLRLLQ 136
Query: 557 LNXXXXXXXXXXXXTIRSSLQDPEKGLWGLVNNAGIS-TFGDVEFTSMETYKEVAEVNLW 733
++ ++ GLWGLVNNAG + D E + + T++ EVN +
Sbjct: 137 MDLTKPGDISRVLEFTKA--HTTSTGLWGLVNNAGHNEVVADAELSPVATFRSCMEVNFF 194
Query: 734 GTVRVTKSFLPLIRRAKGRVVNISSIMGAWP 826
G + +TK LPL+R ++GR+V + S G P
Sbjct: 195 GALELTKGLLPLLRSSRGRIVTVGSPAGDMP 225
Score = 57.0 bits (136), Expect(2) = 9e-32
Identities = 34/118 (28%), Positives = 57/118 (48%), Gaps = 8/118 (6%)
Frame = +1
Query: 844 YCITKFGVEAFSDCLRYEMHPLGVKVSVVEPGNFIVATSLYSPERIRAIATKMWEQ---- 1011
Y +K V D E+ P GVKVS+++PG F E +R + WE+
Sbjct: 232 YGTSKAAVALLMDTFSCELLPWGVKVSIIQPGCF-------KTESVRNVG--QWEKRKQL 282
Query: 1012 ----VPETVRQDYGRKYFDEMVARMENFCNSGSTDTSPVINAVTHALTSTTPYTRYHP 1173
+P+ + Q YG+ Y + + + + +D +PV++A+T AL + P RY+P
Sbjct: 283 LLANLPQELLQAYGKDYIEHLHGQFLHSLRLAMSDLTPVVDAITDALLAARPRRRYYP 340
>ref|NP_002144.1| estradiol 17-beta-dehydrogenase 2 [Homo sapiens].
Length = 387
Score = 116 bits (290), Expect = 5e-26
Identities = 68/152 (44%), Positives = 91/152 (59%), Gaps = 1/152 (0%)
Frame = +2
Query: 377 PVGSKAVLVTGCDSGFGFSLAKHLHSKGFLVFAGCLMKDKGHDGVKELDSLKSDRLRTVQ 556
PV KAVLVTG D G G +L K+L GF VFAG L ++ G +EL S RL +Q
Sbjct: 79 PVDQKAVLVTGGDCGLGHALCKYLDELGFTVFAGVL--NENGPGAEELRRTCSPRLSVLQ 136
Query: 557 LNXXXXXXXXXXXXTIRSSLQDPEKGLWGLVNNAGISTFG-DVEFTSMETYKEVAEVNLW 733
++ + + LQD +GLW ++NNAG+ F D E M YK+ VN +
Sbjct: 137 MDITKPVQIKDAYSKVAAMLQD--RGLWAVINNAGVLGFPTDGELLLMTDYKQCMAVNFF 194
Query: 734 GTVRVTKSFLPLIRRAKGRVVNISSIMGAWPM 829
GTV VTK+FLPL+R++KGR+VN+SS+ G PM
Sbjct: 195 GTVEVTKTFLPLLRKSKGRLVNVSSMGGGAPM 226
Score = 58.2 bits (139), Expect = 1e-08
Identities = 38/138 (27%), Positives = 67/138 (48%), Gaps = 14/138 (10%)
Frame = +1
Query: 802 QQHNGRLANVSR----------SPYCITKFGVEAFSDCLRYEMHPLGVKVSVVEPGNFIV 951
++ GRL NVS + Y +K V FS +R E+ G+KV+ ++PG F+
Sbjct: 208 RKSKGRLVNVSSMGGGAPMERLASYGSSKAAVTMFSSVMRLELSKWGIKVASIQPGGFLT 267
Query: 952 ATSLYSPERIRAIATKMWEQVPETVRQDYGRKYFDEMVARMENFC----NSGSTDTSPVI 1119
+ S ++ + + + +P V++DYG+ Y + NF + S D SPV+
Sbjct: 268 NIAGTS-DKWEKLEKDILDHLPAEVQEDYGQDY----ILAQRNFLLLINSLASKDFSPVL 322
Query: 1120 NAVTHALTSTTPYTRYHP 1173
+ HA+ + +P+ Y P
Sbjct: 323 RDIQHAILAKSPFAYYTP 340
>ref|NP_003699.3| retinol dehydrogenase 16 [Homo sapiens].
Length = 317
Score = 111 bits (277), Expect = 1e-24
Identities = 64/144 (44%), Positives = 86/144 (59%), Gaps = 1/144 (0%)
Frame = +2
Query: 389 KAVLVTGCDSGFGFSLAKHLHSKGFLVFAGCLMKDKGHDGVKELDSLKSDRLRTVQLNXX 568
K V +TGCDSGFG LA+ L ++G V A CL + G ++L SDRL TV L+
Sbjct: 30 KYVFITGCDSGFGKLLARQLDARGLRVLAACLTEK----GAEQLRGQTSDRLETVTLDVT 85
Query: 569 XXXXXXXXXXTIRSSLQDPEKGLWGLVNNAGIST-FGDVEFTSMETYKEVAEVNLWGTVR 745
++ ++D KGLWGLVNNAGIS E + + + + +VNL G +
Sbjct: 86 KTESVAAAAQWVKECVRD--KGLWGLVNNAGISLPTAPNELLTKQDFVTILDVNLLGVID 143
Query: 746 VTKSFLPLIRRAKGRVVNISSIMG 817
VT S LPL+RRA+GRVVN+SS+MG
Sbjct: 144 VTLSLLPLVRRARGRVVNVSSVMG 167
Score = 80.5 bits (197), Expect = 3e-15
Identities = 48/127 (37%), Positives = 68/127 (53%), Gaps = 9/127 (7%)
Frame = +1
Query: 814 GRLANVSR---------SPYCITKFGVEAFSDCLRYEMHPLGVKVSVVEPGNFIVATSLY 966
GR+ NVS YCI+K+GVEAFSD LR E+ GVKV+++EPG F T++
Sbjct: 157 GRVVNVSSVMGRVSLFGGGYCISKYGVEAFSDSLRRELSYFGVKVAMIEPGYF--KTAVT 214
Query: 967 SPERIRAIATKMWEQVPETVRQDYGRKYFDEMVARMENFCNSGSTDTSPVINAVTHALTS 1146
S ER ++W++ V++ YG K+ + E + D S V N + HAL +
Sbjct: 215 SKERFLKSFLEIWDRSSPEVKEAYGEKFVADYKKSAEQMEQKCTQDLSLVTNCMEHALIA 274
Query: 1147 TTPYTRY 1167
P TRY
Sbjct: 275 CHPRTRY 281
Database: RefSeq44_HP.fasta
Posted date: Nov 15, 2010 4:36 PM
Number of letters in database: 18,324,212
Number of sequences in database: 33,950
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33950
Number of Hits to DB: 46,224,617
Number of extensions: 1280031
Number of successful extensions: 4699
Number of sequences better than 1.0e-05: 18
Number of HSP's gapped: 4660
Number of HSP's successfully gapped: 35
Length of query: 393
Length of database: 18,324,212
Length adjustment: 105
Effective length of query: 288
Effective length of database: 14,759,462
Effective search space: 4250725056
Effective search space used: 4250725056
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel44
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20070806C-003702
(1181 letters)
Database: RefSeq44_MP.fasta
29,866 sequences; 15,452,059 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001116155.1| D-beta-hydroxybutyrate dehydrogenase, mitoch... 296 e-140
Alignment gi|NP_780386.3| D-beta-hydroxybutyrate dehydrogenase, mitochond... 296 e-140
Alignment gi|NP_671755.2| retinol dehydrogenase similar protein 2 [Mus mu... 109 1e-43
Alignment gi|NP_694773.1| retinol dehydrogenase 9 [Mus musculus]. 107 4e-43
Alignment gi|NP_663399.2| cis-retinol/3alpha hydroxysterol short-chain de... 104 3e-42
Alignment gi|NP_780721.1| dehydrogenase/reductase SDR family member 9 pre... 106 4e-39
Alignment gi|NP_032315.2| corticosteroid 11-beta-dehydrogenase isozyme 2 ... 103 2e-32
Alignment gi|NP_032316.2| estradiol 17-beta-dehydrogenase 2 [Mus musculus]. 125 8e-29
Alignment gi|NP_033066.1| retinol dehydrogenase 16 [Mus musculus]. 113 3e-25
Alignment gi|NP_536684.2| retinol dehydrogenase 1 (all trans) [Mus muscul... 112 4e-25
>ref|NP_001116155.1| D-beta-hydroxybutyrate dehydrogenase, mitochondrial precursor [Mus
musculus].
Length = 343
Score = 296 bits (757), Expect(2) = e-140
Identities = 147/194 (75%), Positives = 161/194 (82%)
Frame = +2
Query: 236 RLSRPLSQLPRKTLNFSERENGARGSLLFYSPSFVPGSRRTYADSVNPVGSKAVLVTGCD 415
RLSRPLSQLP K L+ +RENG R +LLFY SF P +RRTYA + KA+L+TGCD
Sbjct: 5 RLSRPLSQLPGKALSVRDRENGTRHTLLFYPASFSPDTRRTYASQADAASGKAILITGCD 64
Query: 416 SGFGFSLAKHLHSKGFLVFAGCLMKDKGHDGVKELDSLKSDRLRTVQLNXXXXXXXXXXX 595
SGFGFSLAKHLHSKGFLVFAGCLMKDKG GVKELDSLKSDRLRT+QLN
Sbjct: 65 SGFGFSLAKHLHSKGFLVFAGCLMKDKGDAGVKELDSLKSDRLRTIQLNVCNSEEVEKAV 124
Query: 596 XTIRSSLQDPEKGLWGLVNNAGISTFGDVEFTSMETYKEVAEVNLWGTVRVTKSFLPLIR 775
TIRS L+DPEKG+WGLVNNAGISTFG+VEFTSMETYKEVAEVNLWGTVR TKSFLPL+R
Sbjct: 125 ETIRSGLKDPEKGMWGLVNNAGISTFGEVEFTSMETYKEVAEVNLWGTVRTTKSFLPLLR 184
Query: 776 RAKGRVVNISSIMG 817
RAKGRVVNISS++G
Sbjct: 185 RAKGRVVNISSMLG 198
Score = 223 bits (567), Expect(2) = e-140
Identities = 102/122 (83%), Positives = 113/122 (92%)
Frame = +1
Query: 814 GRLANVSRSPYCITKFGVEAFSDCLRYEMHPLGVKVSVVEPGNFIVATSLYSPERIRAIA 993
GR+AN +RSPYCITKFG+EAFSDCLRYEMHPLGVKVSVVEPGNFI ATSLYSPERI+AIA
Sbjct: 198 GRMANPARSPYCITKFGIEAFSDCLRYEMHPLGVKVSVVEPGNFIAATSLYSPERIQAIA 257
Query: 994 TKMWEQVPETVRQDYGRKYFDEMVARMENFCNSGSTDTSPVINAVTHALTSTTPYTRYHP 1173
KMW+ +PE VR+DYGRKYFDE +A+ME +CNSGSTDTS VINAVTHALT+ TPYTRYHP
Sbjct: 258 KKMWDDLPEVVRKDYGRKYFDEKIAKMETYCNSGSTDTSSVINAVTHALTAATPYTRYHP 317
Query: 1174 MD 1179
MD
Sbjct: 318 MD 319
>ref|NP_780386.3| D-beta-hydroxybutyrate dehydrogenase, mitochondrial precursor [Mus
musculus].
Length = 343
Score = 296 bits (757), Expect(2) = e-140
Identities = 147/194 (75%), Positives = 161/194 (82%)
Frame = +2
Query: 236 RLSRPLSQLPRKTLNFSERENGARGSLLFYSPSFVPGSRRTYADSVNPVGSKAVLVTGCD 415
RLSRPLSQLP K L+ +RENG R +LLFY SF P +RRTYA + KA+L+TGCD
Sbjct: 5 RLSRPLSQLPGKALSVRDRENGTRHTLLFYPASFSPDTRRTYASQADAASGKAILITGCD 64
Query: 416 SGFGFSLAKHLHSKGFLVFAGCLMKDKGHDGVKELDSLKSDRLRTVQLNXXXXXXXXXXX 595
SGFGFSLAKHLHSKGFLVFAGCLMKDKG GVKELDSLKSDRLRT+QLN
Sbjct: 65 SGFGFSLAKHLHSKGFLVFAGCLMKDKGDAGVKELDSLKSDRLRTIQLNVCNSEEVEKAV 124
Query: 596 XTIRSSLQDPEKGLWGLVNNAGISTFGDVEFTSMETYKEVAEVNLWGTVRVTKSFLPLIR 775
TIRS L+DPEKG+WGLVNNAGISTFG+VEFTSMETYKEVAEVNLWGTVR TKSFLPL+R
Sbjct: 125 ETIRSGLKDPEKGMWGLVNNAGISTFGEVEFTSMETYKEVAEVNLWGTVRTTKSFLPLLR 184
Query: 776 RAKGRVVNISSIMG 817
RAKGRVVNISS++G
Sbjct: 185 RAKGRVVNISSMLG 198
Score = 223 bits (567), Expect(2) = e-140
Identities = 102/122 (83%), Positives = 113/122 (92%)
Frame = +1
Query: 814 GRLANVSRSPYCITKFGVEAFSDCLRYEMHPLGVKVSVVEPGNFIVATSLYSPERIRAIA 993
GR+AN +RSPYCITKFG+EAFSDCLRYEMHPLGVKVSVVEPGNFI ATSLYSPERI+AIA
Sbjct: 198 GRMANPARSPYCITKFGIEAFSDCLRYEMHPLGVKVSVVEPGNFIAATSLYSPERIQAIA 257
Query: 994 TKMWEQVPETVRQDYGRKYFDEMVARMENFCNSGSTDTSPVINAVTHALTSTTPYTRYHP 1173
KMW+ +PE VR+DYGRKYFDE +A+ME +CNSGSTDTS VINAVTHALT+ TPYTRYHP
Sbjct: 258 KKMWDDLPEVVRKDYGRKYFDEKIAKMETYCNSGSTDTSSVINAVTHALTAATPYTRYHP 317
Query: 1174 MD 1179
MD
Sbjct: 318 MD 319
>ref|NP_671755.2| retinol dehydrogenase similar protein 2 [Mus musculus].
Length = 318
Score = 109 bits (273), Expect(2) = 1e-43
Identities = 64/150 (42%), Positives = 90/150 (60%), Gaps = 1/150 (0%)
Frame = +2
Query: 371 VNPVGSKAVLVTGCDSGFGFSLAKHLHSKGFLVFAGCLMKDKGHDGVKELDSLKSDRLRT 550
V+ + K V +TGCDSGFG LA+ L +G V A CL + G +EL + SDRL T
Sbjct: 24 VSHLQDKYVFITGCDSGFGNLLARQLDRRGMRVLAACLTEK----GAEELRNKTSDRLET 79
Query: 551 VQLNXXXXXXXXXXXXTIRSSLQDPEKGLWGLVNNAGIST-FGDVEFTSMETYKEVAEVN 727
V L+ ++ + + +GLWGLVNNAGIS G ++ + + + V +VN
Sbjct: 80 VILDVTKTESIVAATQWVKERVGN--RGLWGLVNNAGISVPLGLSQWMNKQNFASVLDVN 137
Query: 728 LWGTVRVTKSFLPLIRRAKGRVVNISSIMG 817
L G + VT + LPL+R+A+GRVVN+SSIMG
Sbjct: 138 LLGMIEVTLTMLPLVRKARGRVVNVSSIMG 167
Score = 86.3 bits (212), Expect(2) = 1e-43
Identities = 45/118 (38%), Positives = 67/118 (56%)
Frame = +1
Query: 814 GRLANVSRSPYCITKFGVEAFSDCLRYEMHPLGVKVSVVEPGNFIVATSLYSPERIRAIA 993
GR++ YCI+K+GVEAFSD LR E+ GVKV+++EPG F+ T + S R+ +
Sbjct: 167 GRVSLHGNGGYCISKYGVEAFSDSLRRELSYFGVKVAIIEPGFFL--TGMASSARLSSNT 224
Query: 994 TKMWEQVPETVRQDYGRKYFDEMVARMENFCNSGSTDTSPVINAVTHALTSTTPYTRY 1167
+W+Q +R+ YG KY + + + D S V + + HALT+ P TRY
Sbjct: 225 QMLWDQTSSEIREIYGEKYLAFYLKSLNELDKRCNKDLSLVTDCMEHALTACHPRTRY 282
>ref|NP_694773.1| retinol dehydrogenase 9 [Mus musculus].
Length = 317
Score = 107 bits (267), Expect(2) = 4e-43
Identities = 62/150 (41%), Positives = 89/150 (59%), Gaps = 1/150 (0%)
Frame = +2
Query: 371 VNPVGSKAVLVTGCDSGFGFSLAKHLHSKGFLVFAGCLMKDKGHDGVKELDSLKSDRLRT 550
V+ + K V +TGCDSGFG LA+ L +G V A CL + G +EL + SDRL T
Sbjct: 24 VSYLQDKYVFITGCDSGFGNLLARQLDRRGMRVLAACLTEK----GAEELRNKTSDRLET 79
Query: 551 VQLNXXXXXXXXXXXXTIRSSLQDPEKGLWGLVNNAGIST-FGDVEFTSMETYKEVAEVN 727
V L+ ++ + + +GLWGLVNNAGIS G E+ + + V +VN
Sbjct: 80 VILDVTKTESIVTATQWVKERVGN--RGLWGLVNNAGISIPSGPNEWMKKQDFAHVLDVN 137
Query: 728 LWGTVRVTKSFLPLIRRAKGRVVNISSIMG 817
L G + VT S LPL+R+A+GRV+N++S++G
Sbjct: 138 LLGLIEVTLSMLPLVRKARGRVINVASVLG 167
Score = 86.7 bits (213), Expect(2) = 4e-43
Identities = 44/108 (40%), Positives = 64/108 (59%)
Frame = +1
Query: 844 YCITKFGVEAFSDCLRYEMHPLGVKVSVVEPGNFIVATSLYSPERIRAIATKMWEQVPET 1023
YCI+K+GVEAFSD LR E+ GVKV+++EPG F+ T + S R+ + +W+Q
Sbjct: 176 YCISKYGVEAFSDSLRRELSYFGVKVAIIEPGFFL--TGVTSSARLCSNTQMLWDQTSSE 233
Query: 1024 VRQDYGRKYFDEMVARMENFCNSGSTDTSPVINAVTHALTSTTPYTRY 1167
+R+ YG KY + R+ + D S V + + HALT+ P TRY
Sbjct: 234 IREIYGEKYLASYLKRLNELDKRCNKDLSLVTDCMEHALTACHPRTRY 281
>ref|NP_663399.2| cis-retinol/3alpha hydroxysterol short-chain dehydrogenase-like
[Mus musculus].
Length = 318
Score = 104 bits (260), Expect(2) = 3e-42
Identities = 62/150 (41%), Positives = 87/150 (58%), Gaps = 1/150 (0%)
Frame = +2
Query: 371 VNPVGSKAVLVTGCDSGFGFSLAKHLHSKGFLVFAGCLMKDKGHDGVKELDSLKSDRLRT 550
V+ + K V +TGC SGFG LA+ L +G V A C + +G +EL S+RL T
Sbjct: 24 VDHLQDKYVFITGCGSGFGNLLARQLDRRGMRVLAAC----RKEEGAEELRRKTSERLET 79
Query: 551 VQLNXXXXXXXXXXXXTIRSSLQDPEKGLWGLVNNAGIST-FGDVEFTSMETYKEVAEVN 727
V L+ ++ + + +GLWGLVNNAGIS G E+ + + V +VN
Sbjct: 80 VILDVTKTENIVAATQWVKERVGN--RGLWGLVNNAGISVPSGPNEWMKKQDFASVLDVN 137
Query: 728 LWGTVRVTKSFLPLIRRAKGRVVNISSIMG 817
L G + VT S LPL+R+A+GRVVN+SSI+G
Sbjct: 138 LLGLIEVTLSMLPLVRKARGRVVNVSSILG 167
Score = 86.7 bits (213), Expect(2) = 3e-42
Identities = 44/118 (37%), Positives = 67/118 (56%)
Frame = +1
Query: 814 GRLANVSRSPYCITKFGVEAFSDCLRYEMHPLGVKVSVVEPGNFIVATSLYSPERIRAIA 993
GR++ YCI+K+G+EAFSD LR E+ GVKV+++EPG F+ T + S R+ +
Sbjct: 167 GRVSLGGSGGYCISKYGIEAFSDSLRRELRYFGVKVAIIEPGFFL--TGMASSARLCSNI 224
Query: 994 TKMWEQVPETVRQDYGRKYFDEMVARMENFCNSGSTDTSPVINAVTHALTSTTPYTRY 1167
+W+Q +R+ YG KY + + + D S V + + HALT+ P TRY
Sbjct: 225 QMLWDQTSSEIREIYGEKYLASYLKNLNELDQRCNKDLSVVTDCMEHALTACHPRTRY 282
>ref|NP_780721.1| dehydrogenase/reductase SDR family member 9 precursor [Mus
musculus].
Length = 319
Score = 106 bits (264), Expect(2) = 4e-39
Identities = 58/147 (39%), Positives = 86/147 (58%), Gaps = 1/147 (0%)
Frame = +2
Query: 380 VGSKAVLVTGCDSGFGFSLAKHLHSKGFLVFAGCLMKDKGHDGVKELDSLKSDRLRTVQL 559
+ K V +TGCD+GFG A+ KGF V A CL + G L + S+RL TV L
Sbjct: 27 IADKYVFITGCDTGFGNLAARTFDKKGFRVIAACLTES----GSAALKAKTSERLHTVLL 82
Query: 560 NXXXXXXXXXXXXTIRSSLQDPEKGLWGLVNNAGI-STFGDVEFTSMETYKEVAEVNLWG 736
+ ++S + EKGLWGL+NNAG+ ++ +++ Y+E EVNL+G
Sbjct: 83 DVTDPENVKKTAQWVKSHVG--EKGLWGLINNAGVLGVLAPTDWLTVDDYREPIEVNLFG 140
Query: 737 TVRVTKSFLPLIRRAKGRVVNISSIMG 817
+ VT + LPL+++A+GRV+N+SSI G
Sbjct: 141 LINVTLNMLPLVKKARGRVINVSSIGG 167
Score = 74.3 bits (181), Expect(2) = 4e-39
Identities = 43/118 (36%), Positives = 64/118 (54%)
Frame = +1
Query: 814 GRLANVSRSPYCITKFGVEAFSDCLRYEMHPLGVKVSVVEPGNFIVATSLYSPERIRAIA 993
GRLA Y +K+ VE F+D LR +M GV VS +EPG F T L P +
Sbjct: 167 GRLA-FGGGGYTPSKYAVEGFNDSLRRDMKAFGVHVSCIEPGLF--KTELADPIKTTEKK 223
Query: 994 TKMWEQVPETVRQDYGRKYFDEMVARMENFCNSGSTDTSPVINAVTHALTSTTPYTRY 1167
+W+ + ++Q YG Y ++ + R+++ +S + D S V+ + HALTS P TRY
Sbjct: 224 LAIWKHLSPDIKQQYGEGYIEKSLHRLKSNTSSVNLDLSLVVGCMDHALTSLFPKTRY 281
>ref|NP_032315.2| corticosteroid 11-beta-dehydrogenase isozyme 2 [Mus musculus].
Length = 386
Score = 103 bits (258), Expect(2) = 2e-32
Identities = 59/151 (39%), Positives = 85/151 (56%), Gaps = 1/151 (0%)
Frame = +2
Query: 377 PVGSKAVLVTGCDSGFGFSLAKHLHSKGFLVFAGCLMKDKGHDGVKELDSLKSDRLRTVQ 556
PV ++AVL+TGCD+GFG AK L + GF V A L D G EL L S RL+ +Q
Sbjct: 79 PVATRAVLITGCDTGFGKETAKKLDAMGFTVLATVL--DLNSPGALELRDLCSPRLKLLQ 136
Query: 557 LNXXXXXXXXXXXXTIRSSLQDPEKGLWGLVNNAGIS-TFGDVEFTSMETYKEVAEVNLW 733
++ ++ GLWGLVNNAG++ DVE + + T+++ EVN +
Sbjct: 137 MDLTKAEDISRVLEITKA--HTASTGLWGLVNNAGLNIVVADVELSPVATFRKCMEVNFF 194
Query: 734 GTVRVTKSFLPLIRRAKGRVVNISSIMGAWP 826
G + +TK LPL+R ++GR+V + S G P
Sbjct: 195 GALELTKGLLPLLRHSRGRIVTVGSPAGDMP 225
Score = 54.7 bits (130), Expect(2) = 2e-32
Identities = 31/114 (27%), Positives = 54/114 (47%), Gaps = 4/114 (3%)
Frame = +1
Query: 844 YCITKFGVEAFSDCLRYEMHPLGVKVSVVEPGNF----IVATSLYSPERIRAIATKMWEQ 1011
Y +K + D E+ P G+KVS+++PG F + +L+ + +A
Sbjct: 232 YGTSKAAIALLMDTFGCELLPWGIKVSIIKPGCFKTDAVTNVNLWEKRKQLLLAN----- 286
Query: 1012 VPETVRQDYGRKYFDEMVARMENFCNSGSTDTSPVINAVTHALTSTTPYTRYHP 1173
+P + Q YG Y + + + N D SPV++A+ AL + P +RY+P
Sbjct: 287 IPRELLQAYGEDYIEHVHGQFLNSLRMALPDLSPVVDAIIDALLAAQPRSRYYP 340
>ref|NP_032316.2| estradiol 17-beta-dehydrogenase 2 [Mus musculus].
Length = 381
Score = 125 bits (313), Expect = 8e-29
Identities = 72/152 (47%), Positives = 92/152 (60%), Gaps = 1/152 (0%)
Frame = +2
Query: 377 PVGSKAVLVTGCDSGFGFSLAKHLHSKGFLVFAGCLMKDKGHDGVKELDSLKSDRLRTVQ 556
PV KAVLVTG DSGFG LAKHL GF VFAG L DK G +EL S+RL +Q
Sbjct: 80 PVDQKAVLVTGADSGFGHGLAKHLDKLGFTVFAGVL--DKEGPGAEELRKHCSERLSVLQ 137
Query: 557 LNXXXXXXXXXXXXTIRSSLQDPEKGLWGLVNNAGISTFG-DVEFTSMETYKEVAEVNLW 733
++ + +QD KGLW +VNNAG+ D E M Y++ VN +
Sbjct: 138 MDVTKPEQIKDAHSKVTEKIQD--KGLWAVVNNAGVFHLPIDGELIPMSIYRKCMAVNFF 195
Query: 734 GTVRVTKSFLPLIRRAKGRVVNISSIMGAWPM 829
GTV VTK+FLPL+R++KGR+VN+SS+ G P+
Sbjct: 196 GTVEVTKAFLPLLRKSKGRLVNVSSMGGTVPL 227
Score = 53.5 bits (127), Expect = 3e-07
Identities = 34/135 (25%), Positives = 64/135 (47%), Gaps = 11/135 (8%)
Frame = +1
Query: 802 QQHNGRLANVSR----------SPYCITKFGVEAFSDCLRYEMHPLGVKVSVVEPGNFIV 951
++ GRL NVS S Y TK + FS +R E+ GVKV ++PG F
Sbjct: 209 RKSKGRLVNVSSMGGTVPLQMTSAYAATKAALTMFSTIIRQELDKWGVKVVTIKPGGF-- 266
Query: 952 ATSLYSPERI-RAIATKMWEQVPETVRQDYGRKYFDEMVARMENFCNSGSTDTSPVINAV 1128
T++ + I + ++ + + ++++YG+ Y + + D +PV+ +
Sbjct: 267 KTNITGSQDIWDKMEKEILDHFSKDIQENYGQDYVHTQKLIIPTLKERSNPDITPVLRDI 326
Query: 1129 THALTSTTPYTRYHP 1173
HA+++ P + Y+P
Sbjct: 327 QHAISARNPSSFYYP 341
>ref|NP_033066.1| retinol dehydrogenase 16 [Mus musculus].
Length = 317
Score = 113 bits (282), Expect = 3e-25
Identities = 66/150 (44%), Positives = 90/150 (60%), Gaps = 1/150 (0%)
Frame = +2
Query: 371 VNPVGSKAVLVTGCDSGFGFSLAKHLHSKGFLVFAGCLMKDKGHDGVKELDSLKSDRLRT 550
V+ + K V +TGCDSGFG LA+ L +G V A CL + G +EL + SDRL T
Sbjct: 24 VSHLQDKYVFITGCDSGFGTLLARQLDRRGMRVLAACLTEK----GAEELRNKTSDRLET 79
Query: 551 VQLNXXXXXXXXXXXXTIRSSLQDPEKGLWGLVNNAGIST-FGDVEFTSMETYKEVAEVN 727
V L+ ++ + + +GLWGLVNNAGIST G E+ + + V +VN
Sbjct: 80 VILDVTKTESIVTATQWVKEHVGN--RGLWGLVNNAGISTPSGPNEWMKKQDFAHVLDVN 137
Query: 728 LWGTVRVTKSFLPLIRRAKGRVVNISSIMG 817
L G + VT S LPL+R+A+GRVVN+SS+MG
Sbjct: 138 LLGMIEVTLSMLPLVRKARGRVVNVSSVMG 167
Score = 88.2 bits (217), Expect = 1e-17
Identities = 49/127 (38%), Positives = 70/127 (55%), Gaps = 9/127 (7%)
Frame = +1
Query: 814 GRLANVSR---------SPYCITKFGVEAFSDCLRYEMHPLGVKVSVVEPGNFIVATSLY 966
GR+ NVS YCI+K+GVEAFSD LR E+ GVKV+++EPG F+ T +
Sbjct: 157 GRVVNVSSVMGRVSLFGGGYCISKYGVEAFSDSLRRELSYFGVKVAIIEPGFFL--TGVT 214
Query: 967 SPERIRAIATKMWEQVPETVRQDYGRKYFDEMVARMENFCNSGSTDTSPVINAVTHALTS 1146
S R+ + +W+Q +R+ YG KY + R+ + D S V + + HALT+
Sbjct: 215 SSARLCSNTQMLWDQTSSEIREIYGEKYLASYLKRLNKLDKRCNKDLSGVTDCMEHALTA 274
Query: 1147 TTPYTRY 1167
P TRY
Sbjct: 275 CHPRTRY 281
>ref|NP_536684.2| retinol dehydrogenase 1 (all trans) [Mus musculus].
Length = 317
Score = 112 bits (281), Expect = 4e-25
Identities = 66/150 (44%), Positives = 90/150 (60%), Gaps = 1/150 (0%)
Frame = +2
Query: 371 VNPVGSKAVLVTGCDSGFGFSLAKHLHSKGFLVFAGCLMKDKGHDGVKELDSLKSDRLRT 550
V+ + K V +TGCDSGFG LA+ L +G V A CL + G +EL + SDRL T
Sbjct: 24 VSHLQDKYVFITGCDSGFGNLLARQLDRRGMRVLAACLTEK----GAEELRNKTSDRLET 79
Query: 551 VQLNXXXXXXXXXXXXTIRSSLQDPEKGLWGLVNNAGIST-FGDVEFTSMETYKEVAEVN 727
V L+ ++ + + +GLWGLVNNAGIST G E+ + + V +VN
Sbjct: 80 VILDVTKTESIVAATQWVKERVGN--RGLWGLVNNAGISTPSGPNEWMKKQDFARVLDVN 137
Query: 728 LWGTVRVTKSFLPLIRRAKGRVVNISSIMG 817
L G + VT S LPL+R+A+GRVVN+SS+MG
Sbjct: 138 LLGMIEVTLSMLPLVRKARGRVVNVSSVMG 167
Score = 81.6 bits (200), Expect = 1e-15
Identities = 46/127 (36%), Positives = 69/127 (54%), Gaps = 9/127 (7%)
Frame = +1
Query: 814 GRLANVSR---------SPYCITKFGVEAFSDCLRYEMHPLGVKVSVVEPGNFIVATSLY 966
GR+ NVS YCI+K+GVEAFSD LR E+ GVKV+++EPG F T +
Sbjct: 157 GRVVNVSSVMGRMSFFGGGYCISKYGVEAFSDSLRRELSYFGVKVAIIEPGGF--KTCVT 214
Query: 967 SPERIRAIATKMWEQVPETVRQDYGRKYFDEMVARMENFCNSGSTDTSPVINAVTHALTS 1146
S +R+ + +W++ V++ YG K+ + + + D S V + + HALT+
Sbjct: 215 SSDRLSSNTKMIWDKASSEVKEIYGEKFLLFYLKNLNELDKRCNKDLSVVTDCMEHALTA 274
Query: 1147 TTPYTRY 1167
P TRY
Sbjct: 275 CHPRTRY 281
Database: RefSeq44_MP.fasta
Posted date: Nov 15, 2010 4:36 PM
Number of letters in database: 15,452,059
Number of sequences in database: 29,866
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 29866
Number of Hits to DB: 38,354,587
Number of extensions: 1040019
Number of successful extensions: 3715
Number of sequences better than 1.0e-05: 21
Number of HSP's gapped: 3659
Number of HSP's successfully gapped: 41
Length of query: 393
Length of database: 15,452,059
Length adjustment: 103
Effective length of query: 290
Effective length of database: 12,375,861
Effective search space: 3588999690
Effective search space used: 3588999690
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel44
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20070806C-003702
(1181 letters)
Database: RefSeq44_SP.fasta
20,576 sequences; 9,542,844 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_001926007.2| PREDICTED: d-beta-hydroxybutyrate dehydrogen... 252 e-117
Alignment gi|XP_001926114.2| PREDICTED: d-beta-hydroxybutyrate dehydrogen... 252 8e-98
Alignment gi|XP_003132659.1| PREDICTED: d-beta-hydroxybutyrate dehydrogen... 239 2e-63
Alignment gi|XP_003133512.1| PREDICTED: dehydrogenase/reductase SDR famil... 105 2e-38
Alignment gi|XP_003133511.1| PREDICTED: dehydrogenase/reductase SDR famil... 105 2e-38
Alignment gi|XP_003133510.1| PREDICTED: dehydrogenase/reductase SDR famil... 105 5e-32
Alignment gi|NP_001161121.1| estradiol 17-beta-dehydrogenase 2 [Sus scrof... 116 2e-26
Alignment gi|NP_999078.1| corticosteroid 11-beta-dehydrogenase isozyme 2 ... 107 1e-23
Alignment gi|XP_003126340.1| PREDICTED: retinol dehydrogenase 16-like iso... 106 2e-23
Alignment gi|XP_003126339.1| PREDICTED: retinol dehydrogenase 16-like iso... 106 2e-23
>ref|XP_001926007.2| PREDICTED: d-beta-hydroxybutyrate dehydrogenase, mitochondrial [Sus
scrofa].
Length = 339
Score = 252 bits (643), Expect(2) = e-117
Identities = 121/122 (99%), Positives = 121/122 (99%)
Frame = +1
Query: 814 GRLANVSRSPYCITKFGVEAFSDCLRYEMHPLGVKVSVVEPGNFIVATSLYSPERIRAIA 993
GRLANVSRSPYCITKFGVEAFSDCLRYEMHPLGVKVSVVEPGNFIVATSLYSPERIRAIA
Sbjct: 194 GRLANVSRSPYCITKFGVEAFSDCLRYEMHPLGVKVSVVEPGNFIVATSLYSPERIRAIA 253
Query: 994 TKMWEQVPETVRQDYGRKYFDEMVARMENFCNSGSTDTSPVINAVTHALTSTTPYTRYHP 1173
TKMWEQVPE VRQDYGRKYFDEMVARMENFCNSGSTDTSPVINAVTHALTSTTPYTRYHP
Sbjct: 254 TKMWEQVPEAVRQDYGRKYFDEMVARMENFCNSGSTDTSPVINAVTHALTSTTPYTRYHP 313
Query: 1174 MD 1179
MD
Sbjct: 314 MD 315
Score = 189 bits (481), Expect(2) = e-117
Identities = 97/110 (88%), Positives = 98/110 (89%)
Frame = +2
Query: 488 KDKGHDGVKELDSLKSDRLRTVQLNXXXXXXXXXXXXTIRSSLQDPEKGLWGLVNNAGIS 667
+DKGHDGVKELDSLKSDRLRTVQLN TIRSSLQDPEKGLWGLVNNAGIS
Sbjct: 85 QDKGHDGVKELDSLKSDRLRTVQLNVCKSEEVEKVVETIRSSLQDPEKGLWGLVNNAGIS 144
Query: 668 TFGDVEFTSMETYKEVAEVNLWGTVRVTKSFLPLIRRAKGRVVNISSIMG 817
TFGDVEFTSMETYKEVAEVNLWGTVRVTKSFLPLIRRAKGRVVNISSIMG
Sbjct: 145 TFGDVEFTSMETYKEVAEVNLWGTVRVTKSFLPLIRRAKGRVVNISSIMG 194
>ref|XP_001926114.2| PREDICTED: d-beta-hydroxybutyrate dehydrogenase, mitochondrial-like,
partial [Sus scrofa].
Length = 206
Score = 252 bits (643), Expect(2) = 8e-98
Identities = 121/122 (99%), Positives = 121/122 (99%)
Frame = +1
Query: 814 GRLANVSRSPYCITKFGVEAFSDCLRYEMHPLGVKVSVVEPGNFIVATSLYSPERIRAIA 993
GRLANVSRSPYCITKFGVEAFSDCLRYEMHPLGVKVSVVEPGNFIVATSLYSPERIRAIA
Sbjct: 61 GRLANVSRSPYCITKFGVEAFSDCLRYEMHPLGVKVSVVEPGNFIVATSLYSPERIRAIA 120
Query: 994 TKMWEQVPETVRQDYGRKYFDEMVARMENFCNSGSTDTSPVINAVTHALTSTTPYTRYHP 1173
TKMWEQVPE VRQDYGRKYFDEMVARMENFCNSGSTDTSPVINAVTHALTSTTPYTRYHP
Sbjct: 121 TKMWEQVPEAVRQDYGRKYFDEMVARMENFCNSGSTDTSPVINAVTHALTSTTPYTRYHP 180
Query: 1174 MD 1179
MD
Sbjct: 181 MD 182
Score = 124 bits (310), Expect(2) = 8e-98
Identities = 61/61 (100%), Positives = 61/61 (100%)
Frame = +2
Query: 635 LWGLVNNAGISTFGDVEFTSMETYKEVAEVNLWGTVRVTKSFLPLIRRAKGRVVNISSIM 814
LWGLVNNAGISTFGDVEFTSMETYKEVAEVNLWGTVRVTKSFLPLIRRAKGRVVNISSIM
Sbjct: 1 LWGLVNNAGISTFGDVEFTSMETYKEVAEVNLWGTVRVTKSFLPLIRRAKGRVVNISSIM 60
Query: 815 G 817
G
Sbjct: 61 G 61
>ref|XP_003132659.1| PREDICTED: d-beta-hydroxybutyrate dehydrogenase, mitochondrial-like
[Sus scrofa].
Length = 174
Score = 239 bits (610), Expect = 2e-63
Identities = 121/133 (90%), Positives = 121/133 (90%)
Frame = +2
Query: 236 RLSRPLSQLPRKTLNFSERENGARGSLLFYSPSFVPGSRRTYADSVNPVGSKAVLVTGCD 415
RLSRPLSQLPRKTLNFSERENGARGSLLFYSPSFVPGSRRTYADSVNPVGSKAVLVTGCD
Sbjct: 8 RLSRPLSQLPRKTLNFSERENGARGSLLFYSPSFVPGSRRTYADSVNPVGSKAVLVTGCD 67
Query: 416 SGFGFSLAKHLHSKGFLVFAGCLMKDKGHDGVKELDSLKSDRLRTVQLNXXXXXXXXXXX 595
SGFGFSLAKHLHSKGFLVFAGCLMKDKGHDGVKELDSLKSDRLRTVQLN
Sbjct: 68 SGFGFSLAKHLHSKGFLVFAGCLMKDKGHDGVKELDSLKSDRLRTVQLNVCKSEEVEKVV 127
Query: 596 XTIRSSLQDPEKG 634
TIRSSLQDPEKG
Sbjct: 128 ETIRSSLQDPEKG 140
>ref|XP_003133512.1| PREDICTED: dehydrogenase/reductase SDR family member 9-like isoform
2 [Sus scrofa].
Length = 319
Score = 105 bits (262), Expect(2) = 2e-38
Identities = 59/147 (40%), Positives = 86/147 (58%), Gaps = 1/147 (0%)
Frame = +2
Query: 380 VGSKAVLVTGCDSGFGFSLAKHLHSKGFLVFAGCLMKDKGHDGVKELDSLKSDRLRTVQL 559
+ K + +TGCD+GFG A+ KGF V A CL + G L + S+RL TV L
Sbjct: 27 ITDKYIFITGCDTGFGNLAARTFDKKGFHVIAACLTES----GSTALKAETSERLHTVLL 82
Query: 560 NXXXXXXXXXXXXTIRSSLQDPEKGLWGLVNNAGI-STFGDVEFTSMETYKEVAEVNLWG 736
+ +++ Q EKGLWGL+NNAGI ++ ++E Y+E EVNL+G
Sbjct: 83 DVTDPENVKRTAQWVKN--QVGEKGLWGLINNAGILGVLAPTDWLTVEDYREPIEVNLFG 140
Query: 737 TVRVTKSFLPLIRRAKGRVVNISSIMG 817
+ VT + LPL+++A+GRV+N+SSI G
Sbjct: 141 LINVTLNMLPLVKKARGRVINVSSIGG 167
Score = 72.0 bits (175), Expect(2) = 2e-38
Identities = 41/118 (34%), Positives = 62/118 (52%)
Frame = +1
Query: 814 GRLANVSRSPYCITKFGVEAFSDCLRYEMHPLGVKVSVVEPGNFIVATSLYSPERIRAIA 993
GRLA Y +K+ VE F+D LR +M GV V+ +EPG F T L P +
Sbjct: 167 GRLA-FGGGGYAPSKYAVEGFNDSLRRDMKAFGVHVACIEPGLF--KTGLADPVKTAEKK 223
Query: 994 TKMWEQVPETVRQDYGRKYFDEMVARMENFCNSGSTDTSPVINAVTHALTSTTPYTRY 1167
+W + +RQ YG Y ++ +++++ + + D S V+ + HALTS P TRY
Sbjct: 224 LAIWNHLSPDIRQQYGEGYIEKCLSKLKGSKSFMNVDLSLVVECMDHALTSLFPKTRY 281
>ref|XP_003133511.1| PREDICTED: dehydrogenase/reductase SDR family member 9-like isoform
1 [Sus scrofa].
Length = 319
Score = 105 bits (262), Expect(2) = 2e-38
Identities = 59/147 (40%), Positives = 86/147 (58%), Gaps = 1/147 (0%)
Frame = +2
Query: 380 VGSKAVLVTGCDSGFGFSLAKHLHSKGFLVFAGCLMKDKGHDGVKELDSLKSDRLRTVQL 559
+ K + +TGCD+GFG A+ KGF V A CL + G L + S+RL TV L
Sbjct: 27 ITDKYIFITGCDTGFGNLAARTFDKKGFHVIAACLTES----GSTALKAETSERLHTVLL 82
Query: 560 NXXXXXXXXXXXXTIRSSLQDPEKGLWGLVNNAGI-STFGDVEFTSMETYKEVAEVNLWG 736
+ +++ Q EKGLWGL+NNAGI ++ ++E Y+E EVNL+G
Sbjct: 83 DVTDPENVKRTAQWVKN--QVGEKGLWGLINNAGILGVLAPTDWLTVEDYREPIEVNLFG 140
Query: 737 TVRVTKSFLPLIRRAKGRVVNISSIMG 817
+ VT + LPL+++A+GRV+N+SSI G
Sbjct: 141 LINVTLNMLPLVKKARGRVINVSSIGG 167
Score = 72.0 bits (175), Expect(2) = 2e-38
Identities = 41/118 (34%), Positives = 62/118 (52%)
Frame = +1
Query: 814 GRLANVSRSPYCITKFGVEAFSDCLRYEMHPLGVKVSVVEPGNFIVATSLYSPERIRAIA 993
GRLA Y +K+ VE F+D LR +M GV V+ +EPG F T L P +
Sbjct: 167 GRLA-FGGGGYAPSKYAVEGFNDSLRRDMKAFGVHVACIEPGLF--KTGLADPVKTAEKK 223
Query: 994 TKMWEQVPETVRQDYGRKYFDEMVARMENFCNSGSTDTSPVINAVTHALTSTTPYTRY 1167
+W + +RQ YG Y ++ +++++ + + D S V+ + HALTS P TRY
Sbjct: 224 LAIWNHLSPDIRQQYGEGYIEKCLSKLKGSKSFMNVDLSLVVECMDHALTSLFPKTRY 281
>ref|XP_003133510.1| PREDICTED: dehydrogenase/reductase SDR family member 9-like,
partial [Sus scrofa].
Length = 245
Score = 105 bits (262), Expect(2) = 5e-32
Identities = 59/147 (40%), Positives = 86/147 (58%), Gaps = 1/147 (0%)
Frame = +2
Query: 380 VGSKAVLVTGCDSGFGFSLAKHLHSKGFLVFAGCLMKDKGHDGVKELDSLKSDRLRTVQL 559
+ K + +TGCD+GFG A+ KGF V A CL + G L + S+RL TV L
Sbjct: 27 ITDKYIFITGCDTGFGNLAARTFDKKGFHVIAACLTES----GSTALKAETSERLHTVLL 82
Query: 560 NXXXXXXXXXXXXTIRSSLQDPEKGLWGLVNNAGI-STFGDVEFTSMETYKEVAEVNLWG 736
+ +++ Q EKGLWGL+NNAGI ++ ++E Y+E EVNL+G
Sbjct: 83 DVTDPENVKRTAQWVKN--QVGEKGLWGLINNAGILGVLAPTDWLTVEDYREPIEVNLFG 140
Query: 737 TVRVTKSFLPLIRRAKGRVVNISSIMG 817
+ VT + LPL+++A+GRV+N+SSI G
Sbjct: 141 LINVTLNMLPLVKKARGRVINVSSIGG 167
Score = 50.8 bits (120), Expect(2) = 5e-32
Identities = 29/82 (35%), Positives = 41/82 (50%)
Frame = +1
Query: 814 GRLANVSRSPYCITKFGVEAFSDCLRYEMHPLGVKVSVVEPGNFIVATSLYSPERIRAIA 993
GRLA Y +K+ VE F+D LR +M GV V+ +EPG F T L P +
Sbjct: 167 GRLA-FGGGGYAPSKYAVEGFNDSLRRDMKAFGVHVACIEPGLF--KTGLADPVKTAEKK 223
Query: 994 TKMWEQVPETVRQDYGRKYFDE 1059
+W + +RQ YG Y ++
Sbjct: 224 LAIWNHLSPDIRQQYGEGYIEK 245
>ref|NP_001161121.1| estradiol 17-beta-dehydrogenase 2 [Sus scrofa].
Length = 388
Score = 116 bits (290), Expect = 2e-26
Identities = 69/152 (45%), Positives = 90/152 (59%), Gaps = 1/152 (0%)
Frame = +2
Query: 377 PVGSKAVLVTGCDSGFGFSLAKHLHSKGFLVFAGCLMKDKGHDGVKELDSLKSDRLRTVQ 556
PV KAVL+TG DSG G +L+K+L GF+VFAG L D+ G +EL S L +Q
Sbjct: 80 PVDQKAVLITGGDSGIGHALSKYLDKLGFIVFAGVL--DEKGSGAEELRRTCSKHLSVLQ 137
Query: 557 LNXXXXXXXXXXXXTIRSSLQDPEKGLWGLVNNAGISTFG-DVEFTSMETYKEVAEVNLW 733
L+ + +Q+ +GLW +VNNAGI F D E M YK VN +
Sbjct: 138 LDITNSQQIRDAHSKVMEKVQN--RGLWAVVNNAGILGFPIDGELIPMTQYKRCMAVNFF 195
Query: 734 GTVRVTKSFLPLIRRAKGRVVNISSIMGAWPM 829
G V VTK+FLPL+R++KGR+VNISS+ G PM
Sbjct: 196 GAVEVTKAFLPLLRKSKGRLVNISSMAGGVPM 227
Score = 63.2 bits (152), Expect = 2e-10
Identities = 41/137 (29%), Positives = 69/137 (50%), Gaps = 13/137 (9%)
Frame = +1
Query: 802 QQHNGRLANVSR----------SPYCITKFGVEAFSDCLRYEMHPLGVKVSVVEPGNF-- 945
++ GRL N+S + Y TK + FS +R E+ GVKVSV++PG+F
Sbjct: 209 RKSKGRLVNISSMAGGVPMEKMAAYSSTKAALTMFSAVMRKELSKWGVKVSVIQPGSFQT 268
Query: 946 -IVATSLYSPERIRAIATKMWEQVPETVRQDYGRKYFDEMVARMENFCNSGSTDTSPVIN 1122
I TS + + + + + +++DYG+ Y + + ++ NS D SPV+
Sbjct: 269 NIAGTS----DLWDKLEKNILDDLTPNLQEDYGQDYILKQRSFLKFMSNSSEPDISPVLL 324
Query: 1123 AVTHALTSTTPYTRYHP 1173
V HA+++ +PY Y P
Sbjct: 325 DVQHAISAKSPYAFYTP 341
>ref|NP_999078.1| corticosteroid 11-beta-dehydrogenase isozyme 2 [Sus scrofa].
Length = 400
Score = 107 bits (266), Expect = 1e-23
Identities = 62/151 (41%), Positives = 87/151 (57%), Gaps = 1/151 (0%)
Frame = +2
Query: 377 PVGSKAVLVTGCDSGFGFSLAKHLHSKGFLVFAGCLMKDKGHDGVKELDSLKSDRLRTVQ 556
PV ++AVL+TGCDSGFG + AK L + GF V A L D G +EL + S RL+ +Q
Sbjct: 79 PVATRAVLITGCDSGFGKATAKKLDAMGFTVLATVLELDS--PGAQELRACCSPRLKLLQ 136
Query: 557 LNXXXXXXXXXXXXTIRSSLQDPEKGLWGLVNNAGISTF-GDVEFTSMETYKEVAEVNLW 733
++ + + GLWGLVNNAG + D E + + TY+ EVN +
Sbjct: 137 MDLTKPADISRVLEFTK--VHTASTGLWGLVNNAGHNILVADAELSPVATYRSCMEVNFF 194
Query: 734 GTVRVTKSFLPLIRRAKGRVVNISSIMGAWP 826
GT+ +TK+ LPL+RR+ GR+V +SS G P
Sbjct: 195 GTLEMTKALLPLLRRSSGRIVTVSSPAGDMP 225
Score = 59.3 bits (142), Expect = 3e-09
Identities = 39/138 (28%), Positives = 65/138 (47%), Gaps = 14/138 (10%)
Frame = +1
Query: 802 QQHNGRLANVSR----------SPYCITKFGVEAFSDCLRYEMHPLGVKVSVVEPGNF-- 945
++ +GR+ VS S Y +K V D E+ P GVKVSV++P F
Sbjct: 208 RRSSGRIVTVSSPAGDMPFPCLSAYGTSKAAVALLMDSFSCELQPWGVKVSVIQPACFRT 267
Query: 946 --IVATSLYSPERIRAIATKMWEQVPETVRQDYGRKYFDEMVARMENFCNSGSTDTSPVI 1119
+ + + + +AT +P+ + Q YG Y + + + + + G D SPV+
Sbjct: 268 EAVKNVDQWEERKRQLLAT-----LPQELLQAYGEDYIEHLNGQFLHSLSQGLPDLSPVV 322
Query: 1120 NAVTHALTSTTPYTRYHP 1173
+A+T AL + P RY+P
Sbjct: 323 DAITDALLAAKPRHRYYP 340
>ref|XP_003126340.1| PREDICTED: retinol dehydrogenase 16-like isoform 2 [Sus scrofa].
Length = 317
Score = 106 bits (265), Expect = 2e-23
Identities = 63/150 (42%), Positives = 86/150 (57%), Gaps = 1/150 (0%)
Frame = +2
Query: 371 VNPVGSKAVLVTGCDSGFGFSLAKHLHSKGFLVFAGCLMKDKGHDGVKELDSLKSDRLRT 550
V+ + K V +TGCDSGFG LA+ L +G V A CL + G ++L SDRL T
Sbjct: 24 VSHLRDKYVFITGCDSGFGNLLARQLDLRGLRVLAACLTEQ----GAQQLRKQTSDRLET 79
Query: 551 VQLNXXXXXXXXXXXXTIRSSLQDPEKGLWGLVNNAGIST-FGDVEFTSMETYKEVAEVN 727
V L+ ++ + D +GLWGLVNNAGI T E+ + + + + +VN
Sbjct: 80 VLLDVTKTESVAAAKEWVKERVGD--RGLWGLVNNAGICTPLAPSEWLTKQDFMVMLDVN 137
Query: 728 LWGTVRVTKSFLPLIRRAKGRVVNISSIMG 817
L G V VT LPL+R+ KGRVVN+SS+MG
Sbjct: 138 LLGMVDVTLQLLPLVRKTKGRVVNVSSVMG 167
Score = 77.8 bits (190), Expect = 9e-15
Identities = 48/129 (37%), Positives = 66/129 (51%), Gaps = 9/129 (6%)
Frame = +1
Query: 814 GRLANVSR---------SPYCITKFGVEAFSDCLRYEMHPLGVKVSVVEPGNFIVATSLY 966
GR+ NVS YC++K+GVEAFSD LR E+ GVKV+V+EPG F+ T++
Sbjct: 157 GRVVNVSSVMGRVSLFGGGYCLSKYGVEAFSDSLRRELSYFGVKVAVIEPGFFM--TNMT 214
Query: 967 SPERIRAIATKMWEQVPETVRQDYGRKYFDEMVARMENFCNSGSTDTSPVINAVTHALTS 1146
+ E W+Q V+ YG + + + S + S V N + HALTS
Sbjct: 215 AAEVFNGNLQAAWQQASPEVKDLYGDAFVANFMKTYDLLKPQWSGNLSLVTNCMEHALTS 274
Query: 1147 TTPYTRYHP 1173
P TRY P
Sbjct: 275 CHPRTRYSP 283
>ref|XP_003126339.1| PREDICTED: retinol dehydrogenase 16-like isoform 1 [Sus scrofa].
Length = 317
Score = 106 bits (265), Expect = 2e-23
Identities = 63/150 (42%), Positives = 86/150 (57%), Gaps = 1/150 (0%)
Frame = +2
Query: 371 VNPVGSKAVLVTGCDSGFGFSLAKHLHSKGFLVFAGCLMKDKGHDGVKELDSLKSDRLRT 550
V+ + K V +TGCDSGFG LA+ L +G V A CL + G ++L SDRL T
Sbjct: 24 VSHLRDKYVFITGCDSGFGNLLARQLDLRGLRVLAACLTEQ----GAQQLRKQTSDRLET 79
Query: 551 VQLNXXXXXXXXXXXXTIRSSLQDPEKGLWGLVNNAGIST-FGDVEFTSMETYKEVAEVN 727
V L+ ++ + D +GLWGLVNNAGI T E+ + + + + +VN
Sbjct: 80 VLLDVTKTESVAAAKEWVKERVGD--RGLWGLVNNAGICTPLAPSEWLTKQDFMVMLDVN 137
Query: 728 LWGTVRVTKSFLPLIRRAKGRVVNISSIMG 817
L G V VT LPL+R+ KGRVVN+SS+MG
Sbjct: 138 LLGMVDVTLQLLPLVRKTKGRVVNVSSVMG 167
Score = 77.8 bits (190), Expect = 9e-15
Identities = 48/129 (37%), Positives = 66/129 (51%), Gaps = 9/129 (6%)
Frame = +1
Query: 814 GRLANVSR---------SPYCITKFGVEAFSDCLRYEMHPLGVKVSVVEPGNFIVATSLY 966
GR+ NVS YC++K+GVEAFSD LR E+ GVKV+V+EPG F+ T++
Sbjct: 157 GRVVNVSSVMGRVSLFGGGYCLSKYGVEAFSDSLRRELSYFGVKVAVIEPGFFM--TNMT 214
Query: 967 SPERIRAIATKMWEQVPETVRQDYGRKYFDEMVARMENFCNSGSTDTSPVINAVTHALTS 1146
+ E W+Q V+ YG + + + S + S V N + HALTS
Sbjct: 215 AAEVFNGNLQAAWQQASPEVKDLYGDAFVANFMKTYDLLKPQWSGNLSLVTNCMEHALTS 274
Query: 1147 TTPYTRYHP 1173
P TRY P
Sbjct: 275 CHPRTRYSP 283
Database: RefSeq44_SP.fasta
Posted date: Nov 15, 2010 4:36 PM
Number of letters in database: 9,542,844
Number of sequences in database: 20,576
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 20576
Number of Hits to DB: 24,400,384
Number of extensions: 681861
Number of successful extensions: 2642
Number of sequences better than 1.0e-05: 18
Number of HSP's gapped: 2593
Number of HSP's successfully gapped: 34
Length of query: 393
Length of database: 9,542,844
Length adjustment: 100
Effective length of query: 293
Effective length of database: 7,485,244
Effective search space: 2193176492
Effective search space used: 2193176492
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)