Search to RefSeqBP_Rel44
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20070806C-003964
(911 letters)
Database: RefSeq44_BP.fasta
33,615 sequences; 18,071,151 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_002692136.1| PREDICTED: methionine sulfoxide reductase B2... 313 2e-85
Alignment gi|XP_869391.2| PREDICTED: methionine sulfoxide reductase B2-li... 313 2e-85
Alignment gi|XP_002687590.1| PREDICTED: methionine sulfoxide reductase B3... 142 5e-34
Alignment gi|XP_002687589.1| PREDICTED: methionine sulfoxide reductase B3... 142 5e-34
Alignment gi|XP_002687588.1| PREDICTED: methionine sulfoxide reductase B3... 142 5e-34
Alignment gi|XP_002687587.1| PREDICTED: methionine sulfoxide reductase B3... 142 5e-34
Alignment gi|XP_001250169.1| PREDICTED: methionine sulfoxide reductase B3... 142 5e-34
Alignment gi|XP_001250113.1| PREDICTED: methionine sulfoxide reductase B3... 142 5e-34
Alignment gi|XP_875267.2| PREDICTED: methionine sulfoxide reductase B3 is... 142 5e-34
Alignment gi|XP_001250066.1| PREDICTED: methionine sulfoxide reductase B3... 142 5e-34
>ref|XP_002692136.1| PREDICTED: methionine sulfoxide reductase B2-like [Bos taurus].
Length = 182
Score = 313 bits (801), Expect = 2e-85
Identities = 150/182 (82%), Positives = 155/182 (85%)
Frame = +3
Query: 9 MARFFRAGPGLPFREVLSRAVWGRADNGGLSPKVGTGDAGSLTKREPFLSKSEWQKKLTP 188
MAR RA GL RE AV GRAD GG G+ AG L KR+P LSKSEWQKKLTP
Sbjct: 1 MARLLRALRGLTLREAPGWAVRGRADCGGFRAGAGSPQAGCLIKRQPALSKSEWQKKLTP 60
Query: 189 EQFHVTREKGTEPPFSGTYLNNKEAGMYHCVCCDSPLFSSEKKYCSGTGWPSFSEAHGTS 368
EQFHVTREKGTEPPFSG YLNNKE GMYHCVCCDSPLFSSEKK+CSGTGWPSFSEAHGTS
Sbjct: 61 EQFHVTREKGTEPPFSGIYLNNKEPGMYHCVCCDSPLFSSEKKFCSGTGWPSFSEAHGTS 120
Query: 369 GSDESDTGILRRVDTSLGTARTEVVCKQCEAHLGHVFPDGPGPTGQRFCINSVALKFKPR 548
GSDES+TGILRR DTSLG ARTEVVCKQCEAHLGHVFPDGPGP GQRFCINSVAL+FKPR
Sbjct: 121 GSDESNTGILRRADTSLGPARTEVVCKQCEAHLGHVFPDGPGPAGQRFCINSVALRFKPR 180
Query: 549 KH 554
KH
Sbjct: 181 KH 182
>ref|XP_869391.2| PREDICTED: methionine sulfoxide reductase B2-like [Bos taurus].
Length = 182
Score = 313 bits (801), Expect = 2e-85
Identities = 150/182 (82%), Positives = 155/182 (85%)
Frame = +3
Query: 9 MARFFRAGPGLPFREVLSRAVWGRADNGGLSPKVGTGDAGSLTKREPFLSKSEWQKKLTP 188
MAR RA GL RE AV GRAD GG G+ AG L KR+P LSKSEWQKKLTP
Sbjct: 1 MARLLRALRGLTLREAPGWAVRGRADCGGFRAGAGSPQAGCLIKRQPALSKSEWQKKLTP 60
Query: 189 EQFHVTREKGTEPPFSGTYLNNKEAGMYHCVCCDSPLFSSEKKYCSGTGWPSFSEAHGTS 368
EQFHVTREKGTEPPFSG YLNNKE GMYHCVCCDSPLFSSEKK+CSGTGWPSFSEAHGTS
Sbjct: 61 EQFHVTREKGTEPPFSGIYLNNKEPGMYHCVCCDSPLFSSEKKFCSGTGWPSFSEAHGTS 120
Query: 369 GSDESDTGILRRVDTSLGTARTEVVCKQCEAHLGHVFPDGPGPTGQRFCINSVALKFKPR 548
GSDES+TGILRR DTSLG ARTEVVCKQCEAHLGHVFPDGPGP GQRFCINSVAL+FKPR
Sbjct: 121 GSDESNTGILRRADTSLGPARTEVVCKQCEAHLGHVFPDGPGPAGQRFCINSVALRFKPR 180
Query: 549 KH 554
KH
Sbjct: 181 KH 182
>ref|XP_002687590.1| PREDICTED: methionine sulfoxide reductase B3-like isoform 4 [Bos
taurus].
Length = 184
Score = 142 bits (357), Expect = 5e-34
Identities = 69/130 (53%), Positives = 85/130 (65%)
Frame = +3
Query: 156 SKSEWQKKLTPEQFHVTREKGTEPPFSGTYLNNKEAGMYHCVCCDSPLFSSEKKYCSGTG 335
S+ E +K+LTP Q+HVT+EKGTE F G Y ++K+ G+Y CV C +PLF SE K+ SG+G
Sbjct: 39 SQQELRKRLTPLQYHVTQEKGTESAFEGEYTHHKDPGIYKCVVCGTPLFKSETKFDSGSG 98
Query: 336 WPSFSEAHGTSGSDESDTGILRRVDTSLGTARTEVVCKQCEAHLGHVFPDGPGPTGQRFC 515
WPSF H SD I D S G R E C QC AHLGH+F DGP PTG+R+C
Sbjct: 99 WPSF---HDVINSD----AITFTDDFSYGMHRVETSCSQCGAHLGHIFDDGPRPTGKRYC 151
Query: 516 INSVALKFKP 545
INS +L F P
Sbjct: 152 INSASLSFSP 161
>ref|XP_002687589.1| PREDICTED: methionine sulfoxide reductase B3-like isoform 3 [Bos
taurus].
Length = 184
Score = 142 bits (357), Expect = 5e-34
Identities = 69/130 (53%), Positives = 85/130 (65%)
Frame = +3
Query: 156 SKSEWQKKLTPEQFHVTREKGTEPPFSGTYLNNKEAGMYHCVCCDSPLFSSEKKYCSGTG 335
S+ E +K+LTP Q+HVT+EKGTE F G Y ++K+ G+Y CV C +PLF SE K+ SG+G
Sbjct: 39 SQQELRKRLTPLQYHVTQEKGTESAFEGEYTHHKDPGIYKCVVCGTPLFKSETKFDSGSG 98
Query: 336 WPSFSEAHGTSGSDESDTGILRRVDTSLGTARTEVVCKQCEAHLGHVFPDGPGPTGQRFC 515
WPSF H SD I D S G R E C QC AHLGH+F DGP PTG+R+C
Sbjct: 99 WPSF---HDVINSD----AITFTDDFSYGMHRVETSCSQCGAHLGHIFDDGPRPTGKRYC 151
Query: 516 INSVALKFKP 545
INS +L F P
Sbjct: 152 INSASLSFSP 161
>ref|XP_002687588.1| PREDICTED: methionine sulfoxide reductase B3-like isoform 2 [Bos
taurus].
Length = 191
Score = 142 bits (357), Expect = 5e-34
Identities = 69/130 (53%), Positives = 85/130 (65%)
Frame = +3
Query: 156 SKSEWQKKLTPEQFHVTREKGTEPPFSGTYLNNKEAGMYHCVCCDSPLFSSEKKYCSGTG 335
S+ E +K+LTP Q+HVT+EKGTE F G Y ++K+ G+Y CV C +PLF SE K+ SG+G
Sbjct: 46 SQQELRKRLTPLQYHVTQEKGTESAFEGEYTHHKDPGIYKCVVCGTPLFKSETKFDSGSG 105
Query: 336 WPSFSEAHGTSGSDESDTGILRRVDTSLGTARTEVVCKQCEAHLGHVFPDGPGPTGQRFC 515
WPSF H SD I D S G R E C QC AHLGH+F DGP PTG+R+C
Sbjct: 106 WPSF---HDVINSD----AITFTDDFSYGMHRVETSCSQCGAHLGHIFDDGPRPTGKRYC 158
Query: 516 INSVALKFKP 545
INS +L F P
Sbjct: 159 INSASLSFSP 168
>ref|XP_002687587.1| PREDICTED: methionine sulfoxide reductase B3-like isoform 1 [Bos
taurus].
Length = 184
Score = 142 bits (357), Expect = 5e-34
Identities = 69/130 (53%), Positives = 85/130 (65%)
Frame = +3
Query: 156 SKSEWQKKLTPEQFHVTREKGTEPPFSGTYLNNKEAGMYHCVCCDSPLFSSEKKYCSGTG 335
S+ E +K+LTP Q+HVT+EKGTE F G Y ++K+ G+Y CV C +PLF SE K+ SG+G
Sbjct: 39 SQQELRKRLTPLQYHVTQEKGTESAFEGEYTHHKDPGIYKCVVCGTPLFKSETKFDSGSG 98
Query: 336 WPSFSEAHGTSGSDESDTGILRRVDTSLGTARTEVVCKQCEAHLGHVFPDGPGPTGQRFC 515
WPSF H SD I D S G R E C QC AHLGH+F DGP PTG+R+C
Sbjct: 99 WPSF---HDVINSD----AITFTDDFSYGMHRVETSCSQCGAHLGHIFDDGPRPTGKRYC 151
Query: 516 INSVALKFKP 545
INS +L F P
Sbjct: 152 INSASLSFSP 161
>ref|XP_001250169.1| PREDICTED: methionine sulfoxide reductase B3 isoform 3 [Bos
taurus].
Length = 184
Score = 142 bits (357), Expect = 5e-34
Identities = 69/130 (53%), Positives = 85/130 (65%)
Frame = +3
Query: 156 SKSEWQKKLTPEQFHVTREKGTEPPFSGTYLNNKEAGMYHCVCCDSPLFSSEKKYCSGTG 335
S+ E +K+LTP Q+HVT+EKGTE F G Y ++K+ G+Y CV C +PLF SE K+ SG+G
Sbjct: 39 SQQELRKRLTPLQYHVTQEKGTESAFEGEYTHHKDPGIYKCVVCGTPLFKSETKFDSGSG 98
Query: 336 WPSFSEAHGTSGSDESDTGILRRVDTSLGTARTEVVCKQCEAHLGHVFPDGPGPTGQRFC 515
WPSF H SD I D S G R E C QC AHLGH+F DGP PTG+R+C
Sbjct: 99 WPSF---HDVINSD----AITFTDDFSYGMHRVETSCSQCGAHLGHIFDDGPRPTGKRYC 151
Query: 516 INSVALKFKP 545
INS +L F P
Sbjct: 152 INSASLSFSP 161
>ref|XP_001250113.1| PREDICTED: methionine sulfoxide reductase B3 isoform 2 [Bos
taurus].
Length = 184
Score = 142 bits (357), Expect = 5e-34
Identities = 69/130 (53%), Positives = 85/130 (65%)
Frame = +3
Query: 156 SKSEWQKKLTPEQFHVTREKGTEPPFSGTYLNNKEAGMYHCVCCDSPLFSSEKKYCSGTG 335
S+ E +K+LTP Q+HVT+EKGTE F G Y ++K+ G+Y CV C +PLF SE K+ SG+G
Sbjct: 39 SQQELRKRLTPLQYHVTQEKGTESAFEGEYTHHKDPGIYKCVVCGTPLFKSETKFDSGSG 98
Query: 336 WPSFSEAHGTSGSDESDTGILRRVDTSLGTARTEVVCKQCEAHLGHVFPDGPGPTGQRFC 515
WPSF H SD I D S G R E C QC AHLGH+F DGP PTG+R+C
Sbjct: 99 WPSF---HDVINSD----AITFTDDFSYGMHRVETSCSQCGAHLGHIFDDGPRPTGKRYC 151
Query: 516 INSVALKFKP 545
INS +L F P
Sbjct: 152 INSASLSFSP 161
>ref|XP_875267.2| PREDICTED: methionine sulfoxide reductase B3 isoform 4 [Bos
taurus].
Length = 191
Score = 142 bits (357), Expect = 5e-34
Identities = 69/130 (53%), Positives = 85/130 (65%)
Frame = +3
Query: 156 SKSEWQKKLTPEQFHVTREKGTEPPFSGTYLNNKEAGMYHCVCCDSPLFSSEKKYCSGTG 335
S+ E +K+LTP Q+HVT+EKGTE F G Y ++K+ G+Y CV C +PLF SE K+ SG+G
Sbjct: 46 SQQELRKRLTPLQYHVTQEKGTESAFEGEYTHHKDPGIYKCVVCGTPLFKSETKFDSGSG 105
Query: 336 WPSFSEAHGTSGSDESDTGILRRVDTSLGTARTEVVCKQCEAHLGHVFPDGPGPTGQRFC 515
WPSF H SD I D S G R E C QC AHLGH+F DGP PTG+R+C
Sbjct: 106 WPSF---HDVINSD----AITFTDDFSYGMHRVETSCSQCGAHLGHIFDDGPRPTGKRYC 158
Query: 516 INSVALKFKP 545
INS +L F P
Sbjct: 159 INSASLSFSP 168
>ref|XP_001250066.1| PREDICTED: methionine sulfoxide reductase B3 isoform 1 [Bos
taurus].
Length = 184
Score = 142 bits (357), Expect = 5e-34
Identities = 69/130 (53%), Positives = 85/130 (65%)
Frame = +3
Query: 156 SKSEWQKKLTPEQFHVTREKGTEPPFSGTYLNNKEAGMYHCVCCDSPLFSSEKKYCSGTG 335
S+ E +K+LTP Q+HVT+EKGTE F G Y ++K+ G+Y CV C +PLF SE K+ SG+G
Sbjct: 39 SQQELRKRLTPLQYHVTQEKGTESAFEGEYTHHKDPGIYKCVVCGTPLFKSETKFDSGSG 98
Query: 336 WPSFSEAHGTSGSDESDTGILRRVDTSLGTARTEVVCKQCEAHLGHVFPDGPGPTGQRFC 515
WPSF H SD I D S G R E C QC AHLGH+F DGP PTG+R+C
Sbjct: 99 WPSF---HDVINSD----AITFTDDFSYGMHRVETSCSQCGAHLGHIFDDGPRPTGKRYC 151
Query: 516 INSVALKFKP 545
INS +L F P
Sbjct: 152 INSASLSFSP 161
Database: RefSeq44_BP.fasta
Posted date: Nov 15, 2010 4:36 PM
Number of letters in database: 18,071,151
Number of sequences in database: 33,615
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33615
Number of Hits to DB: 37,401,904
Number of extensions: 1028126
Number of successful extensions: 3267
Number of sequences better than 1.0e-05: 11
Number of HSP's gapped: 3256
Number of HSP's successfully gapped: 11
Length of query: 303
Length of database: 18,071,151
Length adjustment: 102
Effective length of query: 201
Effective length of database: 14,642,421
Effective search space: 2943126621
Effective search space used: 2943126621
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel44
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20070806C-003964
(911 letters)
Database: RefSeq44_CP.fasta
33,359 sequences; 18,921,627 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_850458.1| PREDICTED: similar to Methionine-R-sulfoxide re... 282 4e-76
Alignment gi|XP_850508.1| PREDICTED: similar to methionine-R-sulfoxide re... 141 1e-33
Alignment gi|NP_001108221.1| selenoprotein X, 1 [Canis lupus familiaris]. 60 4e-09
>ref|XP_850458.1| PREDICTED: similar to Methionine-R-sulfoxide reductase B [Canis
familiaris].
Length = 176
Score = 282 bits (721), Expect = 4e-76
Identities = 130/142 (91%), Positives = 135/142 (95%)
Frame = +3
Query: 129 SLTKREPFLSKSEWQKKLTPEQFHVTREKGTEPPFSGTYLNNKEAGMYHCVCCDSPLFSS 308
SLTK E L+KSEWQKKLTPEQF+VTREKGTEPPFSG YLNNKE+GMYHCVCCDSPLFSS
Sbjct: 35 SLTKHELPLTKSEWQKKLTPEQFYVTREKGTEPPFSGVYLNNKESGMYHCVCCDSPLFSS 94
Query: 309 EKKYCSGTGWPSFSEAHGTSGSDESDTGILRRVDTSLGTARTEVVCKQCEAHLGHVFPDG 488
EKKYCSGTGWP+FSEAHGTSGSDE DTGILRRVDTSLG RTEVVCKQCEAHLGHVFPDG
Sbjct: 95 EKKYCSGTGWPAFSEAHGTSGSDERDTGILRRVDTSLGLTRTEVVCKQCEAHLGHVFPDG 154
Query: 489 PGPTGQRFCINSVALKFKPRKH 554
PGP+GQRFCINSVALKFKPRKH
Sbjct: 155 PGPSGQRFCINSVALKFKPRKH 176
>ref|XP_850508.1| PREDICTED: similar to methionine-R-sulfoxide reductase B3 [Canis
familiaris].
Length = 530
Score = 141 bits (355), Expect = 1e-33
Identities = 69/130 (53%), Positives = 85/130 (65%)
Frame = +3
Query: 156 SKSEWQKKLTPEQFHVTREKGTEPPFSGTYLNNKEAGMYHCVCCDSPLFSSEKKYCSGTG 335
S+ E +K+LTP Q+HVT+EKGTE F G Y ++K+ G+Y CV C +PLF SE K+ SG+G
Sbjct: 386 SQQELRKRLTPLQYHVTQEKGTESAFEGEYTHHKDPGIYKCVVCGTPLFRSESKFDSGSG 445
Query: 336 WPSFSEAHGTSGSDESDTGILRRVDTSLGTARTEVVCKQCEAHLGHVFPDGPGPTGQRFC 515
WPSF H SD I D S G R E C QC AHLGH+F DGP PTG+R+C
Sbjct: 446 WPSF---HDVISSD----AITFTDDFSYGMHRVETSCSQCGAHLGHIFDDGPRPTGKRYC 498
Query: 516 INSVALKFKP 545
INS +L F P
Sbjct: 499 INSASLAFTP 508
>ref|NP_001108221.1| selenoprotein X, 1 [Canis lupus familiaris].
Length = 116
Score = 59.7 bits (143), Expect = 4e-09
Identities = 39/104 (37%), Positives = 53/104 (50%), Gaps = 2/104 (1%)
Frame = +3
Query: 243 YLNNKEAGMYHCVCCDSPLFSSEKKYCSGTGWPSFSEA-HGTSGSDESDTGILRRVDTSL 419
+ N+ E G+Y C C LFSS KY + WP+F+E H S + +R + +
Sbjct: 12 FQNHFEPGVYVCAKCGHELFSSRSKYAHSSPWPAFTETIHADS--------VAKRPERNS 63
Query: 420 GTARTEVVCKQCEAHLGHVF-PDGPGPTGQRFCINSVALKFKPR 548
A +V C +C LGH F DGP P RF I S +LKF P+
Sbjct: 64 PEA-LKVSCGKCGNGLGHEFLNDGPKPGKSRFUIFSSSLKFIPK 106
Database: RefSeq44_CP.fasta
Posted date: Nov 15, 2010 4:36 PM
Number of letters in database: 18,921,627
Number of sequences in database: 33,359
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33359
Number of Hits to DB: 38,123,392
Number of extensions: 1028214
Number of successful extensions: 3004
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 3002
Number of HSP's successfully gapped: 3
Length of query: 303
Length of database: 18,921,627
Length adjustment: 102
Effective length of query: 201
Effective length of database: 15,519,009
Effective search space: 3119320809
Effective search space used: 3119320809
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel44
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20070806C-003964
(911 letters)
Database: RefSeq44_HP.fasta
33,950 sequences; 18,324,212 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_036360.3| methionine-R-sulfoxide reductase B2, mitochondr... 299 3e-81
Alignment gi|NP_932346.1| methionine-R-sulfoxide reductase B3 isoform 1 [... 144 8e-35
Alignment gi|NP_001180390.1| methionine-R-sulfoxide reductase B3 isoform ... 142 3e-34
Alignment gi|NP_001180389.1| methionine-R-sulfoxide reductase B3 isoform ... 142 3e-34
Alignment gi|NP_001026849.1| methionine-R-sulfoxide reductase B3 isoform ... 142 3e-34
Alignment gi|NP_057416.1| methionine-R-sulfoxide reductase B1 [Homo sapie... 60 3e-09
>ref|NP_036360.3| methionine-R-sulfoxide reductase B2, mitochondrial precursor [Homo
sapiens].
Length = 182
Score = 299 bits (765), Expect = 3e-81
Identities = 146/182 (80%), Positives = 152/182 (83%)
Frame = +3
Query: 9 MARFFRAGPGLPFREVLSRAVWGRADNGGLSPKVGTGDAGSLTKREPFLSKSEWQKKLTP 188
MAR GL RAV G+A GG G G+AGSL E L+KSEWQKKLTP
Sbjct: 1 MARLLWLLRGLTLGTAPRRAVRGQAGGGGPGTGPGLGEAGSLATCELPLAKSEWQKKLTP 60
Query: 189 EQFHVTREKGTEPPFSGTYLNNKEAGMYHCVCCDSPLFSSEKKYCSGTGWPSFSEAHGTS 368
EQF+VTREKGTEPPFSG YLNNKEAGMYHCVCCDSPLFSSEKKYCSGTGWPSFSEAHGTS
Sbjct: 61 EQFYVTREKGTEPPFSGIYLNNKEAGMYHCVCCDSPLFSSEKKYCSGTGWPSFSEAHGTS 120
Query: 369 GSDESDTGILRRVDTSLGTARTEVVCKQCEAHLGHVFPDGPGPTGQRFCINSVALKFKPR 548
GSDES TGILRR+DTSLG+ARTEVVCKQCEAHLGHVFPDGPGP GQRFCINSVALKFKPR
Sbjct: 121 GSDESHTGILRRLDTSLGSARTEVVCKQCEAHLGHVFPDGPGPNGQRFCINSVALKFKPR 180
Query: 549 KH 554
KH
Sbjct: 181 KH 182
>ref|NP_932346.1| methionine-R-sulfoxide reductase B3 isoform 1 [Homo sapiens].
Length = 192
Score = 144 bits (364), Expect = 8e-35
Identities = 71/153 (46%), Positives = 95/153 (62%), Gaps = 3/153 (1%)
Frame = +3
Query: 96 LSPKVGTGDAGSLTKREP---FLSKSEWQKKLTPEQFHVTREKGTEPPFSGTYLNNKEAG 266
L+ +G+ +GS ++ S+ E +K+LTP Q+HVT+EKGTE F G Y ++K+ G
Sbjct: 23 LAAALGSAQSGSCRDKKNCKVVFSQQELRKRLTPLQYHVTQEKGTESAFEGEYTHHKDPG 82
Query: 267 MYHCVCCDSPLFSSEKKYCSGTGWPSFSEAHGTSGSDESDTGILRRVDTSLGTARTEVVC 446
+Y CV C +PLF SE K+ SG+GWPSF + + +D D S G R E C
Sbjct: 83 IYKCVVCGTPLFKSETKFDSGSGWPSFHDVINSEAITFTD-------DFSYGMHRVETSC 135
Query: 447 KQCEAHLGHVFPDGPGPTGQRFCINSVALKFKP 545
QC AHLGH+F DGP PTG+R+CINS AL F P
Sbjct: 136 SQCGAHLGHIFDDGPRPTGKRYCINSAALSFTP 168
>ref|NP_001180390.1| methionine-R-sulfoxide reductase B3 isoform 2 [Homo sapiens].
Length = 185
Score = 142 bits (359), Expect = 3e-34
Identities = 67/130 (51%), Positives = 85/130 (65%)
Frame = +3
Query: 156 SKSEWQKKLTPEQFHVTREKGTEPPFSGTYLNNKEAGMYHCVCCDSPLFSSEKKYCSGTG 335
S+ E +K+LTP Q+HVT+EKGTE F G Y ++K+ G+Y CV C +PLF SE K+ SG+G
Sbjct: 39 SQQELRKRLTPLQYHVTQEKGTESAFEGEYTHHKDPGIYKCVVCGTPLFKSETKFDSGSG 98
Query: 336 WPSFSEAHGTSGSDESDTGILRRVDTSLGTARTEVVCKQCEAHLGHVFPDGPGPTGQRFC 515
WPSF + + +D D S G R E C QC AHLGH+F DGP PTG+R+C
Sbjct: 99 WPSFHDVINSEAITFTD-------DFSYGMHRVETSCSQCGAHLGHIFDDGPRPTGKRYC 151
Query: 516 INSVALKFKP 545
INS AL F P
Sbjct: 152 INSAALSFTP 161
>ref|NP_001180389.1| methionine-R-sulfoxide reductase B3 isoform 2 [Homo sapiens].
Length = 185
Score = 142 bits (359), Expect = 3e-34
Identities = 67/130 (51%), Positives = 85/130 (65%)
Frame = +3
Query: 156 SKSEWQKKLTPEQFHVTREKGTEPPFSGTYLNNKEAGMYHCVCCDSPLFSSEKKYCSGTG 335
S+ E +K+LTP Q+HVT+EKGTE F G Y ++K+ G+Y CV C +PLF SE K+ SG+G
Sbjct: 39 SQQELRKRLTPLQYHVTQEKGTESAFEGEYTHHKDPGIYKCVVCGTPLFKSETKFDSGSG 98
Query: 336 WPSFSEAHGTSGSDESDTGILRRVDTSLGTARTEVVCKQCEAHLGHVFPDGPGPTGQRFC 515
WPSF + + +D D S G R E C QC AHLGH+F DGP PTG+R+C
Sbjct: 99 WPSFHDVINSEAITFTD-------DFSYGMHRVETSCSQCGAHLGHIFDDGPRPTGKRYC 151
Query: 516 INSVALKFKP 545
INS AL F P
Sbjct: 152 INSAALSFTP 161
>ref|NP_001026849.1| methionine-R-sulfoxide reductase B3 isoform 2 [Homo sapiens].
Length = 185
Score = 142 bits (359), Expect = 3e-34
Identities = 67/130 (51%), Positives = 85/130 (65%)
Frame = +3
Query: 156 SKSEWQKKLTPEQFHVTREKGTEPPFSGTYLNNKEAGMYHCVCCDSPLFSSEKKYCSGTG 335
S+ E +K+LTP Q+HVT+EKGTE F G Y ++K+ G+Y CV C +PLF SE K+ SG+G
Sbjct: 39 SQQELRKRLTPLQYHVTQEKGTESAFEGEYTHHKDPGIYKCVVCGTPLFKSETKFDSGSG 98
Query: 336 WPSFSEAHGTSGSDESDTGILRRVDTSLGTARTEVVCKQCEAHLGHVFPDGPGPTGQRFC 515
WPSF + + +D D S G R E C QC AHLGH+F DGP PTG+R+C
Sbjct: 99 WPSFHDVINSEAITFTD-------DFSYGMHRVETSCSQCGAHLGHIFDDGPRPTGKRYC 151
Query: 516 INSVALKFKP 545
INS AL F P
Sbjct: 152 INSAALSFTP 161
>ref|NP_057416.1| methionine-R-sulfoxide reductase B1 [Homo sapiens].
Length = 116
Score = 60.1 bits (144), Expect = 3e-09
Identities = 39/104 (37%), Positives = 53/104 (50%), Gaps = 2/104 (1%)
Frame = +3
Query: 243 YLNNKEAGMYHCVCCDSPLFSSEKKYCSGTGWPSFSEA-HGTSGSDESDTGILRRVDTSL 419
+ N+ E G+Y C C LFSS KY + WP+F+E H S + +R + +
Sbjct: 12 FQNHFEPGVYVCAKCGYELFSSRSKYAHSSPWPAFTETIHADS--------VAKRPEHNR 63
Query: 420 GTARTEVVCKQCEAHLGHVF-PDGPGPTGQRFCINSVALKFKPR 548
A +V C +C LGH F DGP P RF I S +LKF P+
Sbjct: 64 SEA-LKVSCGKCGNGLGHEFLNDGPKPGQSRFUIFSSSLKFVPK 106
Database: RefSeq44_HP.fasta
Posted date: Nov 15, 2010 4:36 PM
Number of letters in database: 18,324,212
Number of sequences in database: 33,950
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33950
Number of Hits to DB: 37,759,317
Number of extensions: 1032375
Number of successful extensions: 3116
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 3111
Number of HSP's successfully gapped: 6
Length of query: 303
Length of database: 18,324,212
Length adjustment: 102
Effective length of query: 201
Effective length of database: 14,861,312
Effective search space: 2987123712
Effective search space used: 2987123712
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel44
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20070806C-003964
(911 letters)
Database: RefSeq44_MP.fasta
29,866 sequences; 15,452,059 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_083895.1| methionine-R-sulfoxide reductase B2, mitochondr... 273 1e-73
Alignment gi|NP_796066.1| methionine-R-sulfoxide reductase B3, mitochondr... 141 6e-34
Alignment gi|NP_038787.1| methionine-R-sulfoxide reductase B1 [Mus muscul... 54 2e-07
>ref|NP_083895.1| methionine-R-sulfoxide reductase B2, mitochondrial precursor [Mus
musculus].
Length = 175
Score = 273 bits (699), Expect = 1e-73
Identities = 134/181 (74%), Positives = 145/181 (80%)
Frame = +3
Query: 9 MARFFRAGPGLPFREVLSRAVWGRADNGGLSPKVGTGDAGSLTKREPFLSKSEWQKKLTP 188
MAR RA GLP + R G A +G + D GSLTK + LS+++WQKKLTP
Sbjct: 1 MARLLRALRGLPLLQAPGRLARGCAGSG-------SKDTGSLTKSKRSLSEADWQKKLTP 53
Query: 189 EQFHVTREKGTEPPFSGTYLNNKEAGMYHCVCCDSPLFSSEKKYCSGTGWPSFSEAHGTS 368
EQF+VTREKGTE PFSG YLNNKE GMYHCVCCDSPLFSSEKKYCSGTGWPSFSEA+G+
Sbjct: 54 EQFYVTREKGTEAPFSGMYLNNKETGMYHCVCCDSPLFSSEKKYCSGTGWPSFSEAYGSK 113
Query: 369 GSDESDTGILRRVDTSLGTARTEVVCKQCEAHLGHVFPDGPGPTGQRFCINSVALKFKPR 548
GSDES TGILRR+DTSLG R EVVCKQCEAHLGHVFPDGP PTGQRFCINSVALKFKP
Sbjct: 114 GSDESHTGILRRLDTSLGCPRMEVVCKQCEAHLGHVFPDGPKPTGQRFCINSVALKFKPS 173
Query: 549 K 551
K
Sbjct: 174 K 174
>ref|NP_796066.1| methionine-R-sulfoxide reductase B3, mitochondrial precursor [Mus
musculus].
Length = 186
Score = 141 bits (356), Expect = 6e-34
Identities = 65/130 (50%), Positives = 86/130 (66%)
Frame = +3
Query: 156 SKSEWQKKLTPEQFHVTREKGTEPPFSGTYLNNKEAGMYHCVCCDSPLFSSEKKYCSGTG 335
S+ E +K+LTP Q+HVT+EKGTE F G Y ++K+ G+Y CV C +PLF SE K+ SG+G
Sbjct: 39 SQQELRKRLTPLQYHVTQEKGTESAFEGEYTHHKDPGIYKCVVCGTPLFKSETKFDSGSG 98
Query: 336 WPSFSEAHGTSGSDESDTGILRRVDTSLGTARTEVVCKQCEAHLGHVFPDGPGPTGQRFC 515
WP+F + + + +D D S G R E C QC AHLGH+F DGP PTG+R+C
Sbjct: 99 WPAFHDVISSEAIEFTD-------DFSYGMHRVETSCSQCGAHLGHIFDDGPRPTGKRYC 151
Query: 516 INSVALKFKP 545
INS +L F P
Sbjct: 152 INSASLSFTP 161
>ref|NP_038787.1| methionine-R-sulfoxide reductase B1 [Mus musculus].
Length = 116
Score = 53.5 bits (127), Expect = 2e-07
Identities = 36/104 (34%), Positives = 48/104 (46%), Gaps = 2/104 (1%)
Frame = +3
Query: 243 YLNNKEAGMYHCVCCDSPLFSSEKKYCSGTGWPSFSEA-HGTSGSDESDTGILRRVDTSL 419
+ N+ E G+Y C C LFSS KY + WP+F+E H S + +
Sbjct: 12 FQNHFEPGVYVCAKCSYELFSSHSKYAHSSPWPAFTETIHPDS---------VTKCPEKN 62
Query: 420 GTARTEVVCKQCEAHLGHVF-PDGPGPTGQRFCINSVALKFKPR 548
+V C +C LGH F DGP RF I S +LKF P+
Sbjct: 63 RPEALKVSCGKCGNGLGHEFLNDGPKRGQSRFUIFSSSLKFVPK 106
Database: RefSeq44_MP.fasta
Posted date: Nov 15, 2010 4:36 PM
Number of letters in database: 15,452,059
Number of sequences in database: 29,866
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 29866
Number of Hits to DB: 31,474,083
Number of extensions: 853308
Number of successful extensions: 2555
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 2552
Number of HSP's successfully gapped: 3
Length of query: 303
Length of database: 15,452,059
Length adjustment: 101
Effective length of query: 202
Effective length of database: 12,435,593
Effective search space: 2511989786
Effective search space used: 2511989786
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel44
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20070806C-003964
(911 letters)
Database: RefSeq44_SP.fasta
20,576 sequences; 9,542,844 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003130825.1| PREDICTED: methionine-R-sulfoxide reductase ... 389 e-108
Alignment gi|XP_003126401.1| PREDICTED: methionine-R-sulfoxide reductase ... 64 8e-11
Alignment gi|XP_003126402.1| PREDICTED: methionine-R-sulfoxide reductase ... 63 2e-10
Alignment gi|NP_001090929.1| methionine-R-sulfoxide reductase B1 [Sus scr... 57 2e-08
>ref|XP_003130825.1| PREDICTED: methionine-R-sulfoxide reductase B2, mitochondrial-like
[Sus scrofa].
Length = 182
Score = 389 bits (998), Expect = e-108
Identities = 182/182 (100%), Positives = 182/182 (100%)
Frame = +3
Query: 9 MARFFRAGPGLPFREVLSRAVWGRADNGGLSPKVGTGDAGSLTKREPFLSKSEWQKKLTP 188
MARFFRAGPGLPFREVLSRAVWGRADNGGLSPKVGTGDAGSLTKREPFLSKSEWQKKLTP
Sbjct: 1 MARFFRAGPGLPFREVLSRAVWGRADNGGLSPKVGTGDAGSLTKREPFLSKSEWQKKLTP 60
Query: 189 EQFHVTREKGTEPPFSGTYLNNKEAGMYHCVCCDSPLFSSEKKYCSGTGWPSFSEAHGTS 368
EQFHVTREKGTEPPFSGTYLNNKEAGMYHCVCCDSPLFSSEKKYCSGTGWPSFSEAHGTS
Sbjct: 61 EQFHVTREKGTEPPFSGTYLNNKEAGMYHCVCCDSPLFSSEKKYCSGTGWPSFSEAHGTS 120
Query: 369 GSDESDTGILRRVDTSLGTARTEVVCKQCEAHLGHVFPDGPGPTGQRFCINSVALKFKPR 548
GSDESDTGILRRVDTSLGTARTEVVCKQCEAHLGHVFPDGPGPTGQRFCINSVALKFKPR
Sbjct: 121 GSDESDTGILRRVDTSLGTARTEVVCKQCEAHLGHVFPDGPGPTGQRFCINSVALKFKPR 180
Query: 549 KH 554
KH
Sbjct: 181 KH 182
>ref|XP_003126401.1| PREDICTED: methionine-R-sulfoxide reductase B3, mitochondrial-like
[Sus scrofa].
Length = 88
Score = 64.3 bits (155), Expect = 8e-11
Identities = 27/49 (55%), Positives = 37/49 (75%)
Frame = +3
Query: 156 SKSEWQKKLTPEQFHVTREKGTEPPFSGTYLNNKEAGMYHCVCCDSPLF 302
S+ E +K+LTP Q+HVT+EKGTE F G Y ++K+ G+Y CV C +PLF
Sbjct: 39 SQQELRKRLTPLQYHVTQEKGTESAFEGEYTHHKDPGIYKCVVCGTPLF 87
>ref|XP_003126402.1| PREDICTED: methionine-R-sulfoxide reductase B3, mitochondrial-like
[Sus scrofa].
Length = 63
Score = 62.8 bits (151), Expect = 2e-10
Identities = 25/39 (64%), Positives = 29/39 (74%)
Frame = +3
Query: 429 RTEVVCKQCEAHLGHVFPDGPGPTGQRFCINSVALKFKP 545
R E C QC AHLGH+F DGP PTG+R+CINS +L F P
Sbjct: 3 RVETSCSQCGAHLGHIFDDGPRPTGKRYCINSASLSFTP 41
>ref|NP_001090929.1| methionine-R-sulfoxide reductase B1 [Sus scrofa].
Length = 116
Score = 56.6 bits (135), Expect = 2e-08
Identities = 40/110 (36%), Positives = 54/110 (49%), Gaps = 2/110 (1%)
Frame = +3
Query: 243 YLNNKEAGMYHCVCCDSPLFSSEKKYCSGTGWPSFSEA-HGTSGSDESDTGILRRVDTSL 419
+ N+ E G+Y C C LFSS KY + WP+F+E H S + +R + +
Sbjct: 12 FQNHFEPGVYVCAKCGYELFSSHSKYAHSSPWPAFTETIHADS--------VAKRPEHNR 63
Query: 420 GTARTEVVCKQCEAHLGHVF-PDGPGPTGQRFCINSVALKFKPRKH*PSP 566
A +V C +C LGH F DGP RF I S +LKF P+ SP
Sbjct: 64 PGA-LKVSCGRCGNGLGHEFLNDGPKRGQSRFUIFSSSLKFIPKGQESSP 112
Database: RefSeq44_SP.fasta
Posted date: Nov 15, 2010 4:36 PM
Number of letters in database: 9,542,844
Number of sequences in database: 20,576
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 20576
Number of Hits to DB: 19,856,801
Number of extensions: 545764
Number of successful extensions: 1729
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 1725
Number of HSP's successfully gapped: 4
Length of query: 303
Length of database: 9,542,844
Length adjustment: 97
Effective length of query: 206
Effective length of database: 7,546,972
Effective search space: 1554676232
Effective search space used: 1554676232
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)