Search to RefSeqBP_Rel44
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20070806C-006847
(1224 letters)
Database: RefSeq44_BP.fasta
33,615 sequences; 18,071,151 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001094632.1| tropomyosin alpha-4 chain [Bos taurus]. 235 5e-62
Alignment gi|XP_002699032.1| PREDICTED: tropomyosin 4-like [Bos taurus]. 193 2e-49
Alignment gi|XP_589950.1| PREDICTED: tropomyosin 4 isoform 1 [Bos taurus]. 193 2e-49
Alignment gi|NP_001011674.1| tropomyosin alpha-3 chain [Bos taurus]. 176 3e-44
Alignment gi|NP_001013608.1| tropomyosin alpha-1 chain [Bos taurus]. 172 7e-43
Alignment gi|XP_002688135.1| PREDICTED: tropomyosin 4-like [Bos taurus]. 164 1e-40
Alignment gi|XP_874820.3| PREDICTED: tropomyosin 4 isoform 2 [Bos taurus]. 164 1e-40
Alignment gi|XP_002688284.1| PREDICTED: tropomyosin 4-like [Bos taurus]. 164 2e-40
Alignment gi|XP_001250860.3| PREDICTED: tropomyosin 4 [Bos taurus]. 164 2e-40
Alignment gi|XP_001252597.2| PREDICTED: tropomyosin 4 [Bos taurus]. 164 2e-40
>ref|NP_001094632.1| tropomyosin alpha-4 chain [Bos taurus].
Length = 284
Score = 235 bits (600), Expect = 5e-62
Identities = 136/217 (62%), Positives = 140/217 (64%)
Frame = +2
Query: 341 QRELDGERERREKAEGDVAALNRRIQLVEEELDRAQERXXXXXXXXXXXXXXXXXXXRGM 520
Q +L+ ++ AEGDVAALNRRIQLVEEELDRAQER RGM
Sbjct: 68 QEKLELTEKKASDAEGDVAALNRRIQLVEEELDRAQERLATALQKLEEAEKAADESERGM 127
Query: 521 KVIENRAMKDEEKMEIQEMQLKEAKHIAEEADRKYEEVARKLVIXXXXXXXXXXXXXVSE 700
KVIENRAMKDEEKMEIQEMQLKEAKHIAEEADRKYEEVARKLVI VSE
Sbjct: 128 KVIENRAMKDEEKMEIQEMQLKEAKHIAEEADRKYEEVARKLVILEGELERAEERAEVSE 187
Query: 701 LKCGDLEEELKNVTNNLXXXXXXXXXXXXXXXXXXXXXXXXSDKLKXXXXXXXXXXXXXX 880
LKCGDLEEELKNVTNNL SDKLK
Sbjct: 188 LKCGDLEEELKNVTNNLKSLEAASEKYSEKEDKYEEEIKLLSDKLKEAETRAEFAERTVA 247
Query: 881 KLEKTIDDLEEKLAQAKEENVGLHQTLDQTLNELNCI 991
KLEKTIDDLEEKLAQAKEENVGLHQTLDQTLNELNCI
Sbjct: 248 KLEKTIDDLEEKLAQAKEENVGLHQTLDQTLNELNCI 284
>ref|XP_002699032.1| PREDICTED: tropomyosin 4-like [Bos taurus].
Length = 248
Score = 193 bits (491), Expect = 2e-49
Identities = 115/246 (46%), Positives = 142/246 (57%)
Frame = +2
Query: 248 MAGLNSLEAVKRKIXXXXXXXXXXXXXXXGLQRELDGERERREKAEGDVAALNRRIQLVE 427
MAG+ ++EAVKRKI LQRE++GE RE+AE +VA+LNRRIQLVE
Sbjct: 1 MAGIPTIEAVKRKIQVLQQQADDAQERAERLQREVEGEGRAREQAEAEVASLNRRIQLVE 60
Query: 428 EELDRAQERXXXXXXXXXXXXXXXXXXXRGMKVIENRAMKDEEKMEIQEMQLKEAKHIAE 607
EELDRAQER RGMKVIEN+A+KDEEKME+QE+QLKEAKHIAE
Sbjct: 61 EELDRAQERLATALQKLEEAEKAADESERGMKVIENQALKDEEKMELQEIQLKEAKHIAE 120
Query: 608 EADRKYEEVARKLVIXXXXXXXXXXXXXVSELKCGDLEEELKNVTNNLXXXXXXXXXXXX 787
EADRKYEEVARKLVI ++E +C +++E++K + NL
Sbjct: 121 EADRKYEEVARKLVIIDGDLEGTEERAELAESRCREMDEQIKLMDQNLKCLSAAEEKYSQ 180
Query: 788 XXXXXXXXXXXXSDKLKXXXXXXXXXXXXXXKLEKTIDDLEEKLAQAKEENVGLHQTLDQ 967
+DKLK KLEKTIDDLE+KL KEE++ + LDQ
Sbjct: 181 KEDKYKEEIKILTDKLKEAETRAEFAERLVAKLEKTIDDLEDKLKCTKEEHLCTQRMLDQ 240
Query: 968 TLNELN 985
TL +LN
Sbjct: 241 TLLDLN 246
>ref|XP_589950.1| PREDICTED: tropomyosin 4 isoform 1 [Bos taurus].
Length = 248
Score = 193 bits (491), Expect = 2e-49
Identities = 115/246 (46%), Positives = 142/246 (57%)
Frame = +2
Query: 248 MAGLNSLEAVKRKIXXXXXXXXXXXXXXXGLQRELDGERERREKAEGDVAALNRRIQLVE 427
MAG+ ++EAVKRKI LQRE++GE RE+AE +VA+LNRRIQLVE
Sbjct: 1 MAGIPTIEAVKRKIQVLQQQADDAQERAERLQREVEGEGRAREQAEAEVASLNRRIQLVE 60
Query: 428 EELDRAQERXXXXXXXXXXXXXXXXXXXRGMKVIENRAMKDEEKMEIQEMQLKEAKHIAE 607
EELDRAQER RGMKVIEN+A+KDEEKME+QE+QLKEAKHIAE
Sbjct: 61 EELDRAQERLATALQKLEEAEKAADESERGMKVIENQALKDEEKMELQEIQLKEAKHIAE 120
Query: 608 EADRKYEEVARKLVIXXXXXXXXXXXXXVSELKCGDLEEELKNVTNNLXXXXXXXXXXXX 787
EADRKYEEVARKLVI ++E +C +++E++K + NL
Sbjct: 121 EADRKYEEVARKLVIIDGDLEGTEERAELAESRCREMDEQIKLMDQNLKCLSAAEEKYSQ 180
Query: 788 XXXXXXXXXXXXSDKLKXXXXXXXXXXXXXXKLEKTIDDLEEKLAQAKEENVGLHQTLDQ 967
+DKLK KLEKTIDDLE+KL KEE++ + LDQ
Sbjct: 181 KEDKYKEEIKILTDKLKEAETRAEFAERLVAKLEKTIDDLEDKLKCTKEEHLCTQRMLDQ 240
Query: 968 TLNELN 985
TL +LN
Sbjct: 241 TLLDLN 246
>ref|NP_001011674.1| tropomyosin alpha-3 chain [Bos taurus].
Length = 284
Score = 176 bits (447), Expect = 3e-44
Identities = 107/244 (43%), Positives = 132/244 (54%)
Frame = +2
Query: 260 NSLEAVKRKIXXXXXXXXXXXXXXXGLQRELDGERERREKAEGDVAALNRRIQLVEEELD 439
+ L A+++K+ Q +L+ ++ AE +VA+LNRRIQLVEEELD
Sbjct: 41 DELAAMQKKLKGTEDELDKYSEALKDAQEKLELAEKKAADAEAEVASLNRRIQLVEEELD 100
Query: 440 RAQERXXXXXXXXXXXXXXXXXXXRGMKVIENRAMKDEEKMEIQEMQLKEAKHIAEEADR 619
RAQER RGMKVIENRA+KDEEKME+QE+QLKEAKHIAEEADR
Sbjct: 101 RAQERLATALQKLEEAEKAADESERGMKVIENRALKDEEKMELQEIQLKEAKHIAEEADR 160
Query: 620 KYEEVARKLVIXXXXXXXXXXXXXVSELKCGDLEEELKNVTNNLXXXXXXXXXXXXXXXX 799
KYEEVARKLVI ++E KC +LEEELKNVTNNL
Sbjct: 161 KYEEVARKLVIIEGDLERTEERAELAESKCSELEEELKNVTNNLKSLEAQAEKYSQKEDK 220
Query: 800 XXXXXXXXSDKLKXXXXXXXXXXXXXXKLEKTIDDLEEKLAQAKEENVGLHQTLDQTLNE 979
+DKLK KLEKTIDDLE++L K + + + LD LN+
Sbjct: 221 YEEEIKILTDKLKEAETRAEFAERSVAKLEKTIDDLEDELYAQKLKYKAISEELDHALND 280
Query: 980 LNCI 991
+ I
Sbjct: 281 MTSI 284
>ref|NP_001013608.1| tropomyosin alpha-1 chain [Bos taurus].
Length = 284
Score = 172 bits (435), Expect = 7e-43
Identities = 104/217 (47%), Positives = 122/217 (56%)
Frame = +2
Query: 341 QRELDGERERREKAEGDVAALNRRIQLVEEELDRAQERXXXXXXXXXXXXXXXXXXXRGM 520
Q +L+ ++ AE DVA+LNRRIQLVEEELDRAQER RGM
Sbjct: 68 QEKLELAEKKATDAEADVASLNRRIQLVEEELDRAQERLATALQKLEEAEKAADESERGM 127
Query: 521 KVIENRAMKDEEKMEIQEMQLKEAKHIAEEADRKYEEVARKLVIXXXXXXXXXXXXXVSE 700
KVIE+RA KDEEKMEIQE+QLKEAKHIAE+ADRKYEEVARKLVI +SE
Sbjct: 128 KVIESRAQKDEEKMEIQEIQLKEAKHIAEDADRKYEEVARKLVIIESDLERAEERAELSE 187
Query: 701 LKCGDLEEELKNVTNNLXXXXXXXXXXXXXXXXXXXXXXXXSDKLKXXXXXXXXXXXXXX 880
KC +LEEELK VTNNL SDKLK
Sbjct: 188 GKCAELEEELKTVTNNLKSLEAQAEKYSQKEDKYEEEIKVLSDKLKEAETRAEFAERSVT 247
Query: 881 KLEKTIDDLEEKLAQAKEENVGLHQTLDQTLNELNCI 991
KLEK+IDDLE++L K + + + LD LN++ I
Sbjct: 248 KLEKSIDDLEDELYAQKLKYKAISEELDHALNDMTSI 284
>ref|XP_002688135.1| PREDICTED: tropomyosin 4-like [Bos taurus].
Length = 248
Score = 164 bits (416), Expect = 1e-40
Identities = 103/246 (41%), Positives = 134/246 (54%)
Frame = +2
Query: 248 MAGLNSLEAVKRKIXXXXXXXXXXXXXXXGLQRELDGERERREKAEGDVAALNRRIQLVE 427
MA + EA+K KI LQ+++DGER RE+AE +V +LNRRIQLVE
Sbjct: 1 MAAIAVTEAMKCKIQVLQQQADDAEERAKRLQQKVDGERWAREQAEAEVVSLNRRIQLVE 60
Query: 428 EELDRAQERXXXXXXXXXXXXXXXXXXXRGMKVIENRAMKDEEKMEIQEMQLKEAKHIAE 607
EEL+RAQER R MKVIEN+A+KDEEKME+QE+QLKEAKHIAE
Sbjct: 61 EELNRAQERLATALQKLEEAEKAADESERVMKVIENQALKDEEKMELQEIQLKEAKHIAE 120
Query: 608 EADRKYEEVARKLVIXXXXXXXXXXXXXVSELKCGDLEEELKNVTNNLXXXXXXXXXXXX 787
EA RKYEEVARKLVI +++ +C + E+++ + +L
Sbjct: 121 EAHRKYEEVARKLVIIEGDLERTEERAELAQSRCRKMGEQIRLMDQHLKCLSAAEEKYSQ 180
Query: 788 XXXXXXXXXXXXSDKLKXXXXXXXXXXXXXXKLEKTIDDLEEKLAQAKEENVGLHQTLDQ 967
++KLK KLEKTIDDLE+KL KEE++ + L+Q
Sbjct: 181 KEDKYEEEIKILTEKLKEAETRAEFAERSVAKLEKTIDDLEDKLKCTKEEDLCTQRMLNQ 240
Query: 968 TLNELN 985
TL +LN
Sbjct: 241 TLLDLN 246
>ref|XP_874820.3| PREDICTED: tropomyosin 4 isoform 2 [Bos taurus].
Length = 248
Score = 164 bits (416), Expect = 1e-40
Identities = 103/246 (41%), Positives = 134/246 (54%)
Frame = +2
Query: 248 MAGLNSLEAVKRKIXXXXXXXXXXXXXXXGLQRELDGERERREKAEGDVAALNRRIQLVE 427
MA + EA+K KI LQ+++DGER RE+AE +V +LNRRIQLVE
Sbjct: 1 MAAIAVTEAMKCKIQVLQQQADDAEERAKRLQQKVDGERWAREQAEAEVVSLNRRIQLVE 60
Query: 428 EELDRAQERXXXXXXXXXXXXXXXXXXXRGMKVIENRAMKDEEKMEIQEMQLKEAKHIAE 607
EEL+RAQER R MKVIEN+A+KDEEKME+QE+QLKEAKHIAE
Sbjct: 61 EELNRAQERLATALQKLEEAEKAADESERVMKVIENQALKDEEKMELQEIQLKEAKHIAE 120
Query: 608 EADRKYEEVARKLVIXXXXXXXXXXXXXVSELKCGDLEEELKNVTNNLXXXXXXXXXXXX 787
EA RKYEEVARKLVI +++ +C + E+++ + +L
Sbjct: 121 EAHRKYEEVARKLVIIEGDLERTEERAELAQSRCRKMGEQIRLMDQHLKCLSAAEEKYSQ 180
Query: 788 XXXXXXXXXXXXSDKLKXXXXXXXXXXXXXXKLEKTIDDLEEKLAQAKEENVGLHQTLDQ 967
++KLK KLEKTIDDLE+KL KEE++ + L+Q
Sbjct: 181 KEDKYEEEIKILTEKLKEAETRAEFAERSVAKLEKTIDDLEDKLKCTKEEDLCTQRMLNQ 240
Query: 968 TLNELN 985
TL +LN
Sbjct: 241 TLLDLN 246
>ref|XP_002688284.1| PREDICTED: tropomyosin 4-like [Bos taurus].
Length = 248
Score = 164 bits (415), Expect = 2e-40
Identities = 104/246 (42%), Positives = 133/246 (54%)
Frame = +2
Query: 248 MAGLNSLEAVKRKIXXXXXXXXXXXXXXXGLQRELDGERERREKAEGDVAALNRRIQLVE 427
MA + EA+K KI LQ++++GER RE+AE +V +LNRRIQLVE
Sbjct: 1 MAAIAVTEAMKCKIQVLQQQADDAEERAKCLQQKVEGERWAREQAEAEVVSLNRRIQLVE 60
Query: 428 EELDRAQERXXXXXXXXXXXXXXXXXXXRGMKVIENRAMKDEEKMEIQEMQLKEAKHIAE 607
EEL+RAQER R MKVIEN+A+KDEEKME+QE+QLKEAKHIAE
Sbjct: 61 EELNRAQERLATELQKLEEAEKAADESERVMKVIENQALKDEEKMELQEIQLKEAKHIAE 120
Query: 608 EADRKYEEVARKLVIXXXXXXXXXXXXXVSELKCGDLEEELKNVTNNLXXXXXXXXXXXX 787
EA RKYEEVARKLVI ++E +C + E+ + + +L
Sbjct: 121 EAHRKYEEVARKLVIIEGDLERTEERAELAESRCRKMGEQTRLMDQHLKCLSAAEEKYSQ 180
Query: 788 XXXXXXXXXXXXSDKLKXXXXXXXXXXXXXXKLEKTIDDLEEKLAQAKEENVGLHQTLDQ 967
+DKLK KLEKTIDDLE+KL KEE++ + L+Q
Sbjct: 181 KEDKYEEEIKILTDKLKEAETRAEFAERSVAKLEKTIDDLEDKLKCTKEEDLCTQRMLNQ 240
Query: 968 TLNELN 985
TL +LN
Sbjct: 241 TLLDLN 246
>ref|XP_001250860.3| PREDICTED: tropomyosin 4 [Bos taurus].
Length = 248
Score = 164 bits (415), Expect = 2e-40
Identities = 104/246 (42%), Positives = 133/246 (54%)
Frame = +2
Query: 248 MAGLNSLEAVKRKIXXXXXXXXXXXXXXXGLQRELDGERERREKAEGDVAALNRRIQLVE 427
MA + EA+K KI LQ++++GER RE+AE +V +LNRRIQLVE
Sbjct: 1 MAAIAVTEAMKCKIQVLQQQADDAEERAKCLQQKVEGERWAREQAEAEVVSLNRRIQLVE 60
Query: 428 EELDRAQERXXXXXXXXXXXXXXXXXXXRGMKVIENRAMKDEEKMEIQEMQLKEAKHIAE 607
EEL+RAQER R MKVIEN+A+KDEEKME+QE+QLKEAKHIAE
Sbjct: 61 EELNRAQERLATELQKLEEAEKAADESERVMKVIENQALKDEEKMELQEIQLKEAKHIAE 120
Query: 608 EADRKYEEVARKLVIXXXXXXXXXXXXXVSELKCGDLEEELKNVTNNLXXXXXXXXXXXX 787
EA RKYEEVARKLVI ++E +C + E+ + + +L
Sbjct: 121 EAHRKYEEVARKLVIIEGDLERTEERAELAESRCRKMGEQTRLMDQHLKCLSAAEEKYSQ 180
Query: 788 XXXXXXXXXXXXSDKLKXXXXXXXXXXXXXXKLEKTIDDLEEKLAQAKEENVGLHQTLDQ 967
+DKLK KLEKTIDDLE+KL KEE++ + L+Q
Sbjct: 181 KEDKYEEEIKILTDKLKEAETRAEFAERSVAKLEKTIDDLEDKLKCTKEEDLCTQRMLNQ 240
Query: 968 TLNELN 985
TL +LN
Sbjct: 241 TLLDLN 246
>ref|XP_001252597.2| PREDICTED: tropomyosin 4 [Bos taurus].
Length = 248
Score = 164 bits (415), Expect = 2e-40
Identities = 104/246 (42%), Positives = 133/246 (54%)
Frame = +2
Query: 248 MAGLNSLEAVKRKIXXXXXXXXXXXXXXXGLQRELDGERERREKAEGDVAALNRRIQLVE 427
MA + EA+K KI LQ++++GER RE+AE +V +LNRRIQLVE
Sbjct: 1 MAAIAVTEAMKCKIQVLQQQADDAEERAKCLQQKVEGERWAREQAEAEVVSLNRRIQLVE 60
Query: 428 EELDRAQERXXXXXXXXXXXXXXXXXXXRGMKVIENRAMKDEEKMEIQEMQLKEAKHIAE 607
EEL+RAQER R MKVIEN+A+KDEEKME+QE+QLKEAKHIAE
Sbjct: 61 EELNRAQERLATELQKLEEAEKAADESERVMKVIENQALKDEEKMELQEIQLKEAKHIAE 120
Query: 608 EADRKYEEVARKLVIXXXXXXXXXXXXXVSELKCGDLEEELKNVTNNLXXXXXXXXXXXX 787
EA RKYEEVARKLVI ++E +C + E+ + + +L
Sbjct: 121 EAHRKYEEVARKLVIIEGDLERTEERAELAESRCRKMGEQTRLMDQHLKCLSAAEEKYSQ 180
Query: 788 XXXXXXXXXXXXSDKLKXXXXXXXXXXXXXXKLEKTIDDLEEKLAQAKEENVGLHQTLDQ 967
+DKLK KLEKTIDDLE+KL KEE++ + L+Q
Sbjct: 181 KEDKYEEEIKILTDKLKEAETRAEFAERSVAKLEKTIDDLEDKLKCTKEEDLCTQRMLNQ 240
Query: 968 TLNELN 985
TL +LN
Sbjct: 241 TLLDLN 246
Database: RefSeq44_BP.fasta
Posted date: Nov 15, 2010 4:36 PM
Number of letters in database: 18,071,151
Number of sequences in database: 33,615
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33615
Number of Hits to DB: 30,937,425
Number of extensions: 660330
Number of successful extensions: 3784
Number of sequences better than 1.0e-05: 13
Number of HSP's gapped: 3709
Number of HSP's successfully gapped: 13
Length of query: 408
Length of database: 18,071,151
Length adjustment: 105
Effective length of query: 303
Effective length of database: 14,541,576
Effective search space: 4406097528
Effective search space used: 4406097528
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqCP_Rel44
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20070806C-006847
(1224 letters)
Database: RefSeq44_CP.fasta
33,359 sequences; 18,921,627 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_866109.1| PREDICTED: similar to tropomyosin 1, alpha isof... 235 6e-62
Alignment gi|XP_852641.1| PREDICTED: similar to tropomyosin 1, alpha isof... 235 6e-62
Alignment gi|XP_866095.1| PREDICTED: similar to tropomyosin 1 (alpha) iso... 233 4e-61
Alignment gi|XP_865148.1| PREDICTED: similar to tropomyosin 1 alpha chain... 224 2e-58
Alignment gi|XP_865805.1| PREDICTED: similar to tropomyosin 3 isoform 2 i... 213 2e-55
Alignment gi|XP_865093.1| PREDICTED: similar to tropomyosin 1 alpha chain... 205 6e-53
Alignment gi|XP_865836.1| PREDICTED: similar to tropomyosin 3, gamma isof... 205 8e-53
Alignment gi|XP_866572.1| PREDICTED: similar to tropomyosin 2 (beta) isof... 202 4e-52
Alignment gi|XP_864963.1| PREDICTED: similar to tropomyosin 1 alpha chain... 201 1e-51
Alignment gi|XP_865128.1| PREDICTED: similar to tropomyosin 1 alpha chain... 201 2e-51
>ref|XP_866109.1| PREDICTED: similar to tropomyosin 1, alpha isoform 4 [Canis
familiaris].
Length = 328
Score = 235 bits (600), Expect = 6e-62
Identities = 136/217 (62%), Positives = 140/217 (64%)
Frame = +2
Query: 341 QRELDGERERREKAEGDVAALNRRIQLVEEELDRAQERXXXXXXXXXXXXXXXXXXXRGM 520
Q +L+ ++ AEGDVAALNRRIQLVEEELDRAQER RGM
Sbjct: 112 QEKLELTEKKASDAEGDVAALNRRIQLVEEELDRAQERLATALQKLEEAEKAADESERGM 171
Query: 521 KVIENRAMKDEEKMEIQEMQLKEAKHIAEEADRKYEEVARKLVIXXXXXXXXXXXXXVSE 700
KVIENRAMKDEEKMEIQEMQLKEAKHIAEEADRKYEEVARKLVI VSE
Sbjct: 172 KVIENRAMKDEEKMEIQEMQLKEAKHIAEEADRKYEEVARKLVILEGELERAEERAEVSE 231
Query: 701 LKCGDLEEELKNVTNNLXXXXXXXXXXXXXXXXXXXXXXXXSDKLKXXXXXXXXXXXXXX 880
LKCGDLEEELKNVTNNL SDKLK
Sbjct: 232 LKCGDLEEELKNVTNNLKSLEAASEKYSEKEDKYEEEIKLLSDKLKEAETRAEFAERTVA 291
Query: 881 KLEKTIDDLEEKLAQAKEENVGLHQTLDQTLNELNCI 991
KLEKTIDDLEEKLAQAKEENVGLHQTLDQTLNELNCI
Sbjct: 292 KLEKTIDDLEEKLAQAKEENVGLHQTLDQTLNELNCI 328
>ref|XP_852641.1| PREDICTED: similar to tropomyosin 1, alpha isoform 2 [Canis
familiaris].
Length = 284
Score = 235 bits (600), Expect = 6e-62
Identities = 136/217 (62%), Positives = 140/217 (64%)
Frame = +2
Query: 341 QRELDGERERREKAEGDVAALNRRIQLVEEELDRAQERXXXXXXXXXXXXXXXXXXXRGM 520
Q +L+ ++ AEGDVAALNRRIQLVEEELDRAQER RGM
Sbjct: 68 QEKLELTEKKASDAEGDVAALNRRIQLVEEELDRAQERLATALQKLEEAEKAADESERGM 127
Query: 521 KVIENRAMKDEEKMEIQEMQLKEAKHIAEEADRKYEEVARKLVIXXXXXXXXXXXXXVSE 700
KVIENRAMKDEEKMEIQEMQLKEAKHIAEEADRKYEEVARKLVI VSE
Sbjct: 128 KVIENRAMKDEEKMEIQEMQLKEAKHIAEEADRKYEEVARKLVILEGELERAEERAEVSE 187
Query: 701 LKCGDLEEELKNVTNNLXXXXXXXXXXXXXXXXXXXXXXXXSDKLKXXXXXXXXXXXXXX 880
LKCGDLEEELKNVTNNL SDKLK
Sbjct: 188 LKCGDLEEELKNVTNNLKSLEAASEKYSEKEDKYEEEIKLLSDKLKEAETRAEFAERTVA 247
Query: 881 KLEKTIDDLEEKLAQAKEENVGLHQTLDQTLNELNCI 991
KLEKTIDDLEEKLAQAKEENVGLHQTLDQTLNELNCI
Sbjct: 248 KLEKTIDDLEEKLAQAKEENVGLHQTLDQTLNELNCI 284
>ref|XP_866095.1| PREDICTED: similar to tropomyosin 1 (alpha) isoform 3 [Canis
familiaris].
Length = 279
Score = 233 bits (593), Expect = 4e-61
Identities = 134/205 (65%), Positives = 135/205 (65%)
Frame = +2
Query: 377 KAEGDVAALNRRIQLVEEELDRAQERXXXXXXXXXXXXXXXXXXXRGMKVIENRAMKDEE 556
+AEGDVAALNRRIQLVEEELDRAQER RGMKVIENRAMKDEE
Sbjct: 75 EAEGDVAALNRRIQLVEEELDRAQERLATALQKLEEAEKAADESERGMKVIENRAMKDEE 134
Query: 557 KMEIQEMQLKEAKHIAEEADRKYEEVARKLVIXXXXXXXXXXXXXVSELKCGDLEEELKN 736
KMEIQEMQLKEAKHIAEEADRKYEEVARKLVI VSELKCGDLEEELKN
Sbjct: 135 KMEIQEMQLKEAKHIAEEADRKYEEVARKLVILEGELERAEERAEVSELKCGDLEEELKN 194
Query: 737 VTNNLXXXXXXXXXXXXXXXXXXXXXXXXSDKLKXXXXXXXXXXXXXXKLEKTIDDLEEK 916
VTNNL SDKLK KLEKTIDDLEEK
Sbjct: 195 VTNNLKSLEAASEKYSEKEDKYEEEIKLLSDKLKEAETRAEFAERTVAKLEKTIDDLEEK 254
Query: 917 LAQAKEENVGLHQTLDQTLNELNCI 991
LAQAKEENVGLHQTLDQTLNELNCI
Sbjct: 255 LAQAKEENVGLHQTLDQTLNELNCI 279
>ref|XP_865148.1| PREDICTED: similar to tropomyosin 1 alpha chain isoform 6 isoform
19 [Canis familiaris].
Length = 248
Score = 224 bits (570), Expect = 2e-58
Identities = 134/246 (54%), Positives = 147/246 (59%)
Frame = +2
Query: 248 MAGLNSLEAVKRKIXXXXXXXXXXXXXXXGLQRELDGERERREKAEGDVAALNRRIQLVE 427
MAG +SLEAV+RKI LQRELD ER+ RE AE DVA+LNRRIQLVE
Sbjct: 1 MAGSSSLEAVRRKIRSLQEQADAAEERAGSLQRELDYERKLRETAEADVASLNRRIQLVE 60
Query: 428 EELDRAQERXXXXXXXXXXXXXXXXXXXRGMKVIENRAMKDEEKMEIQEMQLKEAKHIAE 607
EELDRAQER RGMKVIE+RA KDEEKMEIQE+QLKEAKHIAE
Sbjct: 61 EELDRAQERLATALQKLEEAEKAADESERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAE 120
Query: 608 EADRKYEEVARKLVIXXXXXXXXXXXXXVSELKCGDLEEELKNVTNNLXXXXXXXXXXXX 787
+ADRKYEEVARKLVI +SE KC +LEEELK VTNNL
Sbjct: 121 DADRKYEEVARKLVIIESDLERAEERAELSESKCAELEEELKTVTNNLKSLEAQAEKYSQ 180
Query: 788 XXXXXXXXXXXXSDKLKXXXXXXXXXXXXXXKLEKTIDDLEEKLAQAKEENVGLHQTLDQ 967
SDKLK KLEK+IDDLEEK+A AKEEN+ +HQ LDQ
Sbjct: 181 KEDKYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEEKVAHAKEENLSMHQMLDQ 240
Query: 968 TLNELN 985
TL ELN
Sbjct: 241 TLLELN 246
>ref|XP_865805.1| PREDICTED: similar to tropomyosin 3 isoform 2 isoform 17 [Canis
familiaris].
Length = 248
Score = 213 bits (543), Expect = 2e-55
Identities = 126/246 (51%), Positives = 146/246 (59%)
Frame = +2
Query: 248 MAGLNSLEAVKRKIXXXXXXXXXXXXXXXGLQRELDGERERREKAEGDVAALNRRIQLVE 427
MAG+ ++EAVKRKI LQRE++GER RE+AE +VA+LNRRIQLVE
Sbjct: 1 MAGITTIEAVKRKIQVLQQQADDAEERAERLQREVEGERRAREQAEAEVASLNRRIQLVE 60
Query: 428 EELDRAQERXXXXXXXXXXXXXXXXXXXRGMKVIENRAMKDEEKMEIQEMQLKEAKHIAE 607
EELDRAQER RGMKVIENRA+KDEEKME+QE+QLKEAKHIAE
Sbjct: 61 EELDRAQERLATALQKLEEAEKAADESERGMKVIENRALKDEEKMELQEIQLKEAKHIAE 120
Query: 608 EADRKYEEVARKLVIXXXXXXXXXXXXXVSELKCGDLEEELKNVTNNLXXXXXXXXXXXX 787
EADRKYEEVARKLVI ++E KC +LEEELKNVTNNL
Sbjct: 121 EADRKYEEVARKLVIIEGDLERTEERAELAESKCSELEEELKNVTNNLKSLEAQAEKYSQ 180
Query: 788 XXXXXXXXXXXXSDKLKXXXXXXXXXXXXXXKLEKTIDDLEEKLAQAKEENVGLHQTLDQ 967
+DKLK KLEKTIDDLE+KL KEE++ + LDQ
Sbjct: 181 KEDKYEEEIKILTDKLKEAETRAEFAERSVAKLEKTIDDLEDKLKCTKEEHLCTQRMLDQ 240
Query: 968 TLNELN 985
TL +LN
Sbjct: 241 TLLDLN 246
>ref|XP_865093.1| PREDICTED: similar to tropomyosin 1 alpha chain isoform 4 isoform
16 [Canis familiaris].
Length = 248
Score = 205 bits (522), Expect = 6e-53
Identities = 126/246 (51%), Positives = 142/246 (57%)
Frame = +2
Query: 248 MAGLNSLEAVKRKIXXXXXXXXXXXXXXXGLQRELDGERERREKAEGDVAALNRRIQLVE 427
MAG +SLEAV+RKI LQRELD ER+ RE AE DVA+LNRRIQLVE
Sbjct: 1 MAGSSSLEAVRRKIRSLQEQADAAEERAGSLQRELDYERKLRETAEADVASLNRRIQLVE 60
Query: 428 EELDRAQERXXXXXXXXXXXXXXXXXXXRGMKVIENRAMKDEEKMEIQEMQLKEAKHIAE 607
EELDRAQER RGMKVIE+RA KDEEKMEIQE+QLKEAKHIAE
Sbjct: 61 EELDRAQERLATALQKLEEAEKAADESERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAE 120
Query: 608 EADRKYEEVARKLVIXXXXXXXXXXXXXVSELKCGDLEEELKNVTNNLXXXXXXXXXXXX 787
+ADRKYEEVARKLVI +SE + LEE+L+ + L
Sbjct: 121 DADRKYEEVARKLVIIESDLERAEERAELSESQVRQLEEQLRIMDQTLKALMAAEDKYSQ 180
Query: 788 XXXXXXXXXXXXSDKLKXXXXXXXXXXXXXXKLEKTIDDLEEKLAQAKEENVGLHQTLDQ 967
SDKLK KLEK+IDDLEEK+A AKEEN+ +HQ LDQ
Sbjct: 181 KEDKYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEEKVAHAKEENLSMHQMLDQ 240
Query: 968 TLNELN 985
TL ELN
Sbjct: 241 TLLELN 246
>ref|XP_865836.1| PREDICTED: similar to tropomyosin 3, gamma isoform 19 [Canis
familiaris].
Length = 248
Score = 205 bits (521), Expect = 8e-53
Identities = 121/248 (48%), Positives = 143/248 (57%)
Frame = +2
Query: 248 MAGLNSLEAVKRKIXXXXXXXXXXXXXXXGLQRELDGERERREKAEGDVAALNRRIQLVE 427
MAG+ ++EAVKRKI LQRE++GER RE+AE +VA+LNRRIQLVE
Sbjct: 1 MAGITTIEAVKRKIQVLQQQADDAEERAERLQREVEGERRAREQAEAEVASLNRRIQLVE 60
Query: 428 EELDRAQERXXXXXXXXXXXXXXXXXXXRGMKVIENRAMKDEEKMEIQEMQLKEAKHIAE 607
EELDRAQER RGMKVIENRA+KDEEKME+QE+QLKEAKHIAE
Sbjct: 61 EELDRAQERLATALQKLEEAEKAADESERGMKVIENRALKDEEKMELQEIQLKEAKHIAE 120
Query: 608 EADRKYEEVARKLVIXXXXXXXXXXXXXVSELKCGDLEEELKNVTNNLXXXXXXXXXXXX 787
EADRKYEEVARKLVI ++E KC +LEEELKNVTNNL
Sbjct: 121 EADRKYEEVARKLVIIEGDLERTEERAELAESKCSELEEELKNVTNNLKSLEAQAEKYSQ 180
Query: 788 XXXXXXXXXXXXSDKLKXXXXXXXXXXXXXXKLEKTIDDLEEKLAQAKEENVGLHQTLDQ 967
+DKLK KLEKTIDDLE++L K + + + LD
Sbjct: 181 KEDKYEEEIKILTDKLKEAETRAEFAERSVAKLEKTIDDLEDELYAQKLKYKAISEELDH 240
Query: 968 TLNELNCI 991
LN++ I
Sbjct: 241 ALNDMTSI 248
>ref|XP_866572.1| PREDICTED: similar to tropomyosin 2 (beta) isoform 2 isoform 15
[Canis familiaris].
Length = 284
Score = 202 bits (515), Expect = 4e-52
Identities = 119/215 (55%), Positives = 130/215 (60%)
Frame = +2
Query: 341 QRELDGERERREKAEGDVAALNRRIQLVEEELDRAQERXXXXXXXXXXXXXXXXXXXRGM 520
Q +L+ ++ AE DVA+LNRRIQLVEEELDRAQER RGM
Sbjct: 68 QEKLEQAEKKATDAEADVASLNRRIQLVEEELDRAQERLATALQKLEEAEKAADESERGM 127
Query: 521 KVIENRAMKDEEKMEIQEMQLKEAKHIAEEADRKYEEVARKLVIXXXXXXXXXXXXXVSE 700
KVIENRAMKDEEKME+QEMQLKEAKHIAE++DRKYEEVARKLVI V+E
Sbjct: 128 KVIENRAMKDEEKMELQEMQLKEAKHIAEDSDRKYEEVARKLVILEGELERSEERAEVAE 187
Query: 701 LKCGDLEEELKNVTNNLXXXXXXXXXXXXXXXXXXXXXXXXSDKLKXXXXXXXXXXXXXX 880
KCGDLEEELK VTNNL +KLK
Sbjct: 188 SKCGDLEEELKIVTNNLKSLEAQADKYSTKEDKYEEEIKLLEEKLKEAETRAEFAERSVA 247
Query: 881 KLEKTIDDLEEKLAQAKEENVGLHQTLDQTLNELN 985
KLEKTIDDLEE LA AKEENV +HQTLDQTL ELN
Sbjct: 248 KLEKTIDDLEETLASAKEENVEIHQTLDQTLLELN 282
>ref|XP_864963.1| PREDICTED: similar to tropomyosin 1 alpha chain isoform 6 isoform 9
[Canis familiaris].
Length = 245
Score = 201 bits (511), Expect = 1e-51
Identities = 125/244 (51%), Positives = 138/244 (56%)
Frame = +2
Query: 248 MAGLNSLEAVKRKIXXXXXXXXXXXXXXXGLQRELDGERERREKAEGDVAALNRRIQLVE 427
MAG +SLEAV+RKI LQRELD ER+ RE AE DVA+LNRRIQLVE
Sbjct: 1 MAGSSSLEAVRRKIRSLQEQADAAEERAGSLQRELDYERKLRETAEADVASLNRRIQLVE 60
Query: 428 EELDRAQERXXXXXXXXXXXXXXXXXXXRGMKVIENRAMKDEEKMEIQEMQLKEAKHIAE 607
EELDRAQER RGMKVIE+RA KDEEKMEIQE+QLKEAKHIAE
Sbjct: 61 EELDRAQERLATALQKLEEAEKAADESERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAE 120
Query: 608 EADRKYEEVARKLVIXXXXXXXXXXXXXVSELKCGDLEEELKNVTNNLXXXXXXXXXXXX 787
+ADRKYEEVARKLVI +SE KC +LEEELK VTNNL
Sbjct: 121 DADRKYEEVARKLVIIESDLERAEERAELSESKCAELEEELKTVTNNLKSLEAQAEKYSQ 180
Query: 788 XXXXXXXXXXXXSDKLKXXXXXXXXXXXXXXKLEKTIDDLEEKLAQAKEENVGLHQTLDQ 967
SDKLK KLEK+IDDLE++L Q E+N L L
Sbjct: 181 KEDKYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEDQLYQQLEQNRRLTNQLKL 240
Query: 968 TLNE 979
LNE
Sbjct: 241 ALNE 244
>ref|XP_865128.1| PREDICTED: similar to tropomyosin 1 alpha chain isoform 6 isoform
18 [Canis familiaris].
Length = 248
Score = 201 bits (510), Expect = 2e-51
Identities = 123/248 (49%), Positives = 140/248 (56%)
Frame = +2
Query: 248 MAGLNSLEAVKRKIXXXXXXXXXXXXXXXGLQRELDGERERREKAEGDVAALNRRIQLVE 427
MAG +SLEAV+RKI LQRELD ER+ RE AE DVA+LNRRIQLVE
Sbjct: 1 MAGSSSLEAVRRKIRSLQEQADAAEERAGSLQRELDYERKLRETAEADVASLNRRIQLVE 60
Query: 428 EELDRAQERXXXXXXXXXXXXXXXXXXXRGMKVIENRAMKDEEKMEIQEMQLKEAKHIAE 607
EELDRAQER RGMKVIE+RA KDEEKMEIQE+QLKEAKHIAE
Sbjct: 61 EELDRAQERLATALQKLEEAEKAADESERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAE 120
Query: 608 EADRKYEEVARKLVIXXXXXXXXXXXXXVSELKCGDLEEELKNVTNNLXXXXXXXXXXXX 787
+ADRKYEEVARKLVI +SE KC +LEEELK VTNNL
Sbjct: 121 DADRKYEEVARKLVIIESDLERAEERAELSESKCAELEEELKTVTNNLKSLEAQAEKYSQ 180
Query: 788 XXXXXXXXXXXXSDKLKXXXXXXXXXXXXXXKLEKTIDDLEEKLAQAKEENVGLHQTLDQ 967
SDKLK KLEK+IDDLE++L K + + + LD
Sbjct: 181 KEDKYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEDELYAQKLKYKAISEELDH 240
Query: 968 TLNELNCI 991
LN++ I
Sbjct: 241 ALNDMTSI 248
Database: RefSeq44_CP.fasta
Posted date: Nov 15, 2010 4:36 PM
Number of letters in database: 18,921,627
Number of sequences in database: 33,359
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33359
Number of Hits to DB: 31,862,445
Number of extensions: 673430
Number of successful extensions: 4417
Number of sequences better than 1.0e-05: 81
Number of HSP's gapped: 4167
Number of HSP's successfully gapped: 81
Length of query: 408
Length of database: 18,921,627
Length adjustment: 105
Effective length of query: 303
Effective length of database: 15,418,932
Effective search space: 4671936396
Effective search space used: 4671936396
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel44
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20070806C-006847
(1224 letters)
Database: RefSeq44_HP.fasta
33,950 sequences; 18,324,212 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_003281.1| tropomyosin alpha-4 chain isoform 2 [Homo sapie... 281 1e-75
Alignment gi|NP_001138632.1| tropomyosin alpha-4 chain isoform 1 [Homo sa... 235 5e-62
Alignment gi|NP_001036816.1| tropomyosin alpha-3 chain isoform 4 [Homo sa... 213 2e-55
Alignment gi|NP_001036818.1| tropomyosin alpha-3 chain isoform 5 [Homo sa... 204 1e-52
Alignment gi|NP_001018008.1| tropomyosin alpha-1 chain isoform 6 [Homo sa... 200 3e-51
Alignment gi|NP_705935.1| tropomyosin alpha-3 chain isoform 2 [Homo sapie... 197 2e-50
Alignment gi|NP_001018007.1| tropomyosin alpha-1 chain isoform 2 [Homo sa... 195 8e-50
Alignment gi|NP_001018004.1| tropomyosin alpha-1 chain isoform 3 [Homo sa... 195 8e-50
Alignment gi|NP_001036817.1| tropomyosin alpha-3 chain isoform 3 [Homo sa... 188 1e-47
Alignment gi|NP_998839.1| tropomyosin beta chain isoform 2 [Homo sapiens]. 184 2e-46
>ref|NP_003281.1| tropomyosin alpha-4 chain isoform 2 [Homo sapiens].
Length = 248
Score = 281 bits (718), Expect = 1e-75
Identities = 163/248 (65%), Positives = 163/248 (65%)
Frame = +2
Query: 248 MAGLNSLEAVKRKIXXXXXXXXXXXXXXXGLQRELDGERERREKAEGDVAALNRRIQLVE 427
MAGLNSLEAVKRKI GLQRELDGERERREKAEGDVAALNRRIQLVE
Sbjct: 1 MAGLNSLEAVKRKIQALQQQADEAEDRAQGLQRELDGERERREKAEGDVAALNRRIQLVE 60
Query: 428 EELDRAQERXXXXXXXXXXXXXXXXXXXRGMKVIENRAMKDEEKMEIQEMQLKEAKHIAE 607
EELDRAQER RGMKVIENRAMKDEEKMEIQEMQLKEAKHIAE
Sbjct: 61 EELDRAQERLATALQKLEEAEKAADESERGMKVIENRAMKDEEKMEIQEMQLKEAKHIAE 120
Query: 608 EADRKYEEVARKLVIXXXXXXXXXXXXXVSELKCGDLEEELKNVTNNLXXXXXXXXXXXX 787
EADRKYEEVARKLVI VSELKCGDLEEELKNVTNNL
Sbjct: 121 EADRKYEEVARKLVILEGELERAEERAEVSELKCGDLEEELKNVTNNLKSLEAASEKYSE 180
Query: 788 XXXXXXXXXXXXSDKLKXXXXXXXXXXXXXXKLEKTIDDLEEKLAQAKEENVGLHQTLDQ 967
SDKLK KLEKTIDDLEEKLAQAKEENVGLHQTLDQ
Sbjct: 181 KEDKYEEEIKLLSDKLKEAETRAEFAERTVAKLEKTIDDLEEKLAQAKEENVGLHQTLDQ 240
Query: 968 TLNELNCI 991
TLNELNCI
Sbjct: 241 TLNELNCI 248
>ref|NP_001138632.1| tropomyosin alpha-4 chain isoform 1 [Homo sapiens].
Length = 284
Score = 235 bits (600), Expect = 5e-62
Identities = 136/217 (62%), Positives = 140/217 (64%)
Frame = +2
Query: 341 QRELDGERERREKAEGDVAALNRRIQLVEEELDRAQERXXXXXXXXXXXXXXXXXXXRGM 520
Q +L+ ++ AEGDVAALNRRIQLVEEELDRAQER RGM
Sbjct: 68 QEKLELTEKKASDAEGDVAALNRRIQLVEEELDRAQERLATALQKLEEAEKAADESERGM 127
Query: 521 KVIENRAMKDEEKMEIQEMQLKEAKHIAEEADRKYEEVARKLVIXXXXXXXXXXXXXVSE 700
KVIENRAMKDEEKMEIQEMQLKEAKHIAEEADRKYEEVARKLVI VSE
Sbjct: 128 KVIENRAMKDEEKMEIQEMQLKEAKHIAEEADRKYEEVARKLVILEGELERAEERAEVSE 187
Query: 701 LKCGDLEEELKNVTNNLXXXXXXXXXXXXXXXXXXXXXXXXSDKLKXXXXXXXXXXXXXX 880
LKCGDLEEELKNVTNNL SDKLK
Sbjct: 188 LKCGDLEEELKNVTNNLKSLEAASEKYSEKEDKYEEEIKLLSDKLKEAETRAEFAERTVA 247
Query: 881 KLEKTIDDLEEKLAQAKEENVGLHQTLDQTLNELNCI 991
KLEKTIDDLEEKLAQAKEENVGLHQTLDQTLNELNCI
Sbjct: 248 KLEKTIDDLEEKLAQAKEENVGLHQTLDQTLNELNCI 284
>ref|NP_001036816.1| tropomyosin alpha-3 chain isoform 4 [Homo sapiens].
Length = 248
Score = 213 bits (543), Expect = 2e-55
Identities = 126/246 (51%), Positives = 146/246 (59%)
Frame = +2
Query: 248 MAGLNSLEAVKRKIXXXXXXXXXXXXXXXGLQRELDGERERREKAEGDVAALNRRIQLVE 427
MAG+ ++EAVKRKI LQRE++GER RE+AE +VA+LNRRIQLVE
Sbjct: 1 MAGITTIEAVKRKIQVLQQQADDAEERAERLQREVEGERRAREQAEAEVASLNRRIQLVE 60
Query: 428 EELDRAQERXXXXXXXXXXXXXXXXXXXRGMKVIENRAMKDEEKMEIQEMQLKEAKHIAE 607
EELDRAQER RGMKVIENRA+KDEEKME+QE+QLKEAKHIAE
Sbjct: 61 EELDRAQERLATALQKLEEAEKAADESERGMKVIENRALKDEEKMELQEIQLKEAKHIAE 120
Query: 608 EADRKYEEVARKLVIXXXXXXXXXXXXXVSELKCGDLEEELKNVTNNLXXXXXXXXXXXX 787
EADRKYEEVARKLVI ++E KC +LEEELKNVTNNL
Sbjct: 121 EADRKYEEVARKLVIIEGDLERTEERAELAESKCSELEEELKNVTNNLKSLEAQAEKYSQ 180
Query: 788 XXXXXXXXXXXXSDKLKXXXXXXXXXXXXXXKLEKTIDDLEEKLAQAKEENVGLHQTLDQ 967
+DKLK KLEKTIDDLE+KL KEE++ + LDQ
Sbjct: 181 KEDKYEEEIKILTDKLKEAETRAEFAERSVAKLEKTIDDLEDKLKCTKEEHLCTQRMLDQ 240
Query: 968 TLNELN 985
TL +LN
Sbjct: 241 TLLDLN 246
>ref|NP_001036818.1| tropomyosin alpha-3 chain isoform 5 [Homo sapiens].
Length = 247
Score = 204 bits (519), Expect = 1e-52
Identities = 123/245 (50%), Positives = 141/245 (57%)
Frame = +2
Query: 248 MAGLNSLEAVKRKIXXXXXXXXXXXXXXXGLQRELDGERERREKAEGDVAALNRRIQLVE 427
MAG+ ++EAVKRKI LQRE++GER RE+AE +VA+LNRRIQLVE
Sbjct: 1 MAGITTIEAVKRKIQVLQQQADDAEERAERLQREVEGERRAREQAEAEVASLNRRIQLVE 60
Query: 428 EELDRAQERXXXXXXXXXXXXXXXXXXXRGMKVIENRAMKDEEKMEIQEMQLKEAKHIAE 607
EELDRAQER RGMKVIENRA+KDEEKME+QE+QLKEAKHIAE
Sbjct: 61 EELDRAQERLATALQKLEEAEKAADESERGMKVIENRALKDEEKMELQEIQLKEAKHIAE 120
Query: 608 EADRKYEEVARKLVIXXXXXXXXXXXXXVSELKCGDLEEELKNVTNNLXXXXXXXXXXXX 787
EADRKYEEVARKLVI ++E KC +LEEELKNVTNNL
Sbjct: 121 EADRKYEEVARKLVIIEGDLERTEERAELAESKCSELEEELKNVTNNLKSLEAQAEKYSQ 180
Query: 788 XXXXXXXXXXXXSDKLKXXXXXXXXXXXXXXKLEKTIDDLEEKLAQAKEENVGLHQTLDQ 967
+DKLK KLEKTIDDLEE+L E N L L
Sbjct: 181 KEDKYEEEIKILTDKLKEAETRAEFAERSVAKLEKTIDDLEERLYSQLERNRLLSNELKL 240
Query: 968 TLNEL 982
TL++L
Sbjct: 241 TLHDL 245
>ref|NP_001018008.1| tropomyosin alpha-1 chain isoform 6 [Homo sapiens].
Length = 245
Score = 200 bits (508), Expect = 3e-51
Identities = 125/244 (51%), Positives = 138/244 (56%)
Frame = +2
Query: 248 MAGLNSLEAVKRKIXXXXXXXXXXXXXXXGLQRELDGERERREKAEGDVAALNRRIQLVE 427
MAG +SLEAV+RKI LQRELD ER+ RE AE DVA+LNRRIQLVE
Sbjct: 1 MAGSSSLEAVRRKIRSLQEQADAAEERAGTLQRELDHERKLRETAEADVASLNRRIQLVE 60
Query: 428 EELDRAQERXXXXXXXXXXXXXXXXXXXRGMKVIENRAMKDEEKMEIQEMQLKEAKHIAE 607
EELDRAQER RGMKVIE+RA KDEEKMEIQE+QLKEAKHIAE
Sbjct: 61 EELDRAQERLATALQKLEEAEKAADESERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAE 120
Query: 608 EADRKYEEVARKLVIXXXXXXXXXXXXXVSELKCGDLEEELKNVTNNLXXXXXXXXXXXX 787
+ADRKYEEVARKLVI +SE KC +LEEELK VTNNL
Sbjct: 121 DADRKYEEVARKLVIIESDLERAEERAELSEGKCAELEEELKTVTNNLKSLEAQAEKYSQ 180
Query: 788 XXXXXXXXXXXXSDKLKXXXXXXXXXXXXXXKLEKTIDDLEEKLAQAKEENVGLHQTLDQ 967
SDKLK KLEK+IDDLE++L Q E+N L L
Sbjct: 181 KEDRYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEDQLYQQLEQNRRLTNELKL 240
Query: 968 TLNE 979
LNE
Sbjct: 241 ALNE 244
>ref|NP_705935.1| tropomyosin alpha-3 chain isoform 2 [Homo sapiens].
Length = 248
Score = 197 bits (501), Expect = 2e-50
Identities = 116/246 (47%), Positives = 143/246 (58%)
Frame = +2
Query: 248 MAGLNSLEAVKRKIXXXXXXXXXXXXXXXGLQRELDGERERREKAEGDVAALNRRIQLVE 427
MAG+ ++EAVKRKI LQRE++GER RE+AE +VA+LNRRIQLVE
Sbjct: 1 MAGITTIEAVKRKIQVLQQQADDAEERAERLQREVEGERRAREQAEAEVASLNRRIQLVE 60
Query: 428 EELDRAQERXXXXXXXXXXXXXXXXXXXRGMKVIENRAMKDEEKMEIQEMQLKEAKHIAE 607
EELDRAQER RGMKVIENRA+KDEEKME+QE+QLKEAKHIAE
Sbjct: 61 EELDRAQERLATALQKLEEAEKAADESERGMKVIENRALKDEEKMELQEIQLKEAKHIAE 120
Query: 608 EADRKYEEVARKLVIXXXXXXXXXXXXXVSELKCGDLEEELKNVTNNLXXXXXXXXXXXX 787
EADRKYEEVARKLVI ++E +C +++E+++ + NL
Sbjct: 121 EADRKYEEVARKLVIIEGDLERTEERAELAESRCREMDEQIRLMDQNLKCLSAAEEKYSQ 180
Query: 788 XXXXXXXXXXXXSDKLKXXXXXXXXXXXXXXKLEKTIDDLEEKLAQAKEENVGLHQTLDQ 967
+DKLK KLEKTIDDLE+KL KEE++ + LDQ
Sbjct: 181 KEDKYEEEIKILTDKLKEAETRAEFAERSVAKLEKTIDDLEDKLKCTKEEHLCTQRMLDQ 240
Query: 968 TLNELN 985
TL +LN
Sbjct: 241 TLLDLN 246
>ref|NP_001018007.1| tropomyosin alpha-1 chain isoform 2 [Homo sapiens].
Length = 284
Score = 195 bits (495), Expect = 8e-50
Identities = 115/207 (55%), Positives = 125/207 (60%)
Frame = +2
Query: 365 ERREKAEGDVAALNRRIQLVEEELDRAQERXXXXXXXXXXXXXXXXXXXRGMKVIENRAM 544
E KAE DVA+LNRRIQLVEEELDRAQER RGMKVIE+RA
Sbjct: 76 EAAAKAEADVASLNRRIQLVEEELDRAQERLATALQKLEEAEKAADESERGMKVIESRAQ 135
Query: 545 KDEEKMEIQEMQLKEAKHIAEEADRKYEEVARKLVIXXXXXXXXXXXXXVSELKCGDLEE 724
KDEEKMEIQE+QLKEAKHIAE+ADRKYEEVARKLVI +SE KC +LEE
Sbjct: 136 KDEEKMEIQEIQLKEAKHIAEDADRKYEEVARKLVIIESDLERAEERAELSEGKCAELEE 195
Query: 725 ELKNVTNNLXXXXXXXXXXXXXXXXXXXXXXXXSDKLKXXXXXXXXXXXXXXKLEKTIDD 904
ELK VTNNL SDKLK KLEK+IDD
Sbjct: 196 ELKTVTNNLKSLEAQAEKYSQKEDRYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDD 255
Query: 905 LEEKLAQAKEENVGLHQTLDQTLNELN 985
LEEK+A AKEEN+ +HQ LDQTL ELN
Sbjct: 256 LEEKVAHAKEENLSMHQMLDQTLLELN 282
>ref|NP_001018004.1| tropomyosin alpha-1 chain isoform 3 [Homo sapiens].
Length = 284
Score = 195 bits (495), Expect = 8e-50
Identities = 115/215 (53%), Positives = 129/215 (60%)
Frame = +2
Query: 341 QRELDGERERREKAEGDVAALNRRIQLVEEELDRAQERXXXXXXXXXXXXXXXXXXXRGM 520
Q +L+ ++ AE DVA+LNRRIQLVEEELDRAQER RGM
Sbjct: 68 QEKLELAEKKATDAEADVASLNRRIQLVEEELDRAQERLATALQKLEEAEKAADESERGM 127
Query: 521 KVIENRAMKDEEKMEIQEMQLKEAKHIAEEADRKYEEVARKLVIXXXXXXXXXXXXXVSE 700
KVIE+RA KDEEKMEIQE+QLKEAKHIAE+ADRKYEEVARKLVI +SE
Sbjct: 128 KVIESRAQKDEEKMEIQEIQLKEAKHIAEDADRKYEEVARKLVIIESDLERAEERAELSE 187
Query: 701 LKCGDLEEELKNVTNNLXXXXXXXXXXXXXXXXXXXXXXXXSDKLKXXXXXXXXXXXXXX 880
KC +LEEELK VTNNL SDKLK
Sbjct: 188 GKCAELEEELKTVTNNLKSLEAQAEKYSQKEDRYEEEIKVLSDKLKEAETRAEFAERSVT 247
Query: 881 KLEKTIDDLEEKLAQAKEENVGLHQTLDQTLNELN 985
KLEK+IDDLEEK+A AKEEN+ +HQ LDQTL ELN
Sbjct: 248 KLEKSIDDLEEKVAHAKEENLSMHQMLDQTLLELN 282
>ref|NP_001036817.1| tropomyosin alpha-3 chain isoform 3 [Homo sapiens].
Length = 247
Score = 188 bits (477), Expect = 1e-47
Identities = 113/245 (46%), Positives = 138/245 (56%)
Frame = +2
Query: 248 MAGLNSLEAVKRKIXXXXXXXXXXXXXXXGLQRELDGERERREKAEGDVAALNRRIQLVE 427
MAG+ ++EAVKRKI LQRE++GER RE+AE +VA+LNRRIQLVE
Sbjct: 1 MAGITTIEAVKRKIQVLQQQADDAEERAERLQREVEGERRAREQAEAEVASLNRRIQLVE 60
Query: 428 EELDRAQERXXXXXXXXXXXXXXXXXXXRGMKVIENRAMKDEEKMEIQEMQLKEAKHIAE 607
EELDRAQER RGMKVIENRA+KDEEKME+QE+QLKEAKHIAE
Sbjct: 61 EELDRAQERLATALQKLEEAEKAADESERGMKVIENRALKDEEKMELQEIQLKEAKHIAE 120
Query: 608 EADRKYEEVARKLVIXXXXXXXXXXXXXVSELKCGDLEEELKNVTNNLXXXXXXXXXXXX 787
EADRKYEEVARKLVI ++E +C +++E+++ + NL
Sbjct: 121 EADRKYEEVARKLVIIEGDLERTEERAELAESRCREMDEQIRLMDQNLKCLSAAEEKYSQ 180
Query: 788 XXXXXXXXXXXXSDKLKXXXXXXXXXXXXXXKLEKTIDDLEEKLAQAKEENVGLHQTLDQ 967
+DKLK KLEKTIDDLEE+L E N L L
Sbjct: 181 KEDKYEEEIKILTDKLKEAETRAEFAERSVAKLEKTIDDLEERLYSQLERNRLLSNELKL 240
Query: 968 TLNEL 982
TL++L
Sbjct: 241 TLHDL 245
>ref|NP_998839.1| tropomyosin beta chain isoform 2 [Homo sapiens].
Length = 284
Score = 184 bits (466), Expect = 2e-46
Identities = 110/215 (51%), Positives = 124/215 (57%)
Frame = +2
Query: 341 QRELDGERERREKAEGDVAALNRRIQLVEEELDRAQERXXXXXXXXXXXXXXXXXXXRGM 520
Q +L+ ++ AE DVA+LNRRIQLVEEELDRAQER RGM
Sbjct: 68 QEKLEQAEKKATDAEADVASLNRRIQLVEEELDRAQERLATALQKLEEAEKAADESERGM 127
Query: 521 KVIENRAMKDEEKMEIQEMQLKEAKHIAEEADRKYEEVARKLVIXXXXXXXXXXXXXVSE 700
KVIENRAMKDEEKME+QEMQLKEAKHIAE++DRKYEEVARKLVI V+E
Sbjct: 128 KVIENRAMKDEEKMELQEMQLKEAKHIAEDSDRKYEEVARKLVILEGELERSEERAEVAE 187
Query: 701 LKCGDLEEELKNVTNNLXXXXXXXXXXXXXXXXXXXXXXXXSDKLKXXXXXXXXXXXXXX 880
+ LEEEL+ + L +KLK
Sbjct: 188 SRARQLEEELRTMDQALKSLMASEEEYSTKEDKYEEEIKLLEEKLKEAETRAEFAERSVA 247
Query: 881 KLEKTIDDLEEKLAQAKEENVGLHQTLDQTLNELN 985
KLEKTIDDLEE LA AKEENV +HQTLDQTL ELN
Sbjct: 248 KLEKTIDDLEETLASAKEENVEIHQTLDQTLLELN 282
Database: RefSeq44_HP.fasta
Posted date: Nov 15, 2010 4:36 PM
Number of letters in database: 18,324,212
Number of sequences in database: 33,950
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33950
Number of Hits to DB: 31,244,538
Number of extensions: 656570
Number of successful extensions: 3897
Number of sequences better than 1.0e-05: 16
Number of HSP's gapped: 3815
Number of HSP's successfully gapped: 16
Length of query: 408
Length of database: 18,324,212
Length adjustment: 105
Effective length of query: 303
Effective length of database: 14,759,462
Effective search space: 4472116986
Effective search space used: 4472116986
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel44
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20070806C-006847
(1224 letters)
Database: RefSeq44_MP.fasta
29,866 sequences; 15,452,059 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001001491.1| tropomyosin alpha-4 chain [Mus musculus]. 271 7e-73
Alignment gi|NP_001157724.1| tropomyosin alpha-1 chain isoform 6 [Mus mus... 223 2e-58
Alignment gi|NP_001157725.1| tropomyosin alpha-1 chain isoform 7 [Mus mus... 205 7e-53
Alignment gi|NP_001157726.1| tropomyosin alpha-1 chain isoform 8 [Mus mus... 200 2e-51
Alignment gi|NP_001157728.1| tropomyosin alpha-1 chain isoform 10 [Mus mu... 199 5e-51
Alignment gi|NP_001157721.1| tropomyosin alpha-1 chain isoform 2 [Mus mus... 195 7e-50
Alignment gi|NP_077745.2| tropomyosin alpha-1 chain isoform 3 [Mus muscul... 195 7e-50
Alignment gi|NP_001157722.1| tropomyosin alpha-1 chain isoform 4 [Mus mus... 176 3e-44
Alignment gi|NP_033442.2| tropomyosin beta chain [Mus musculus]. 176 3e-44
Alignment gi|NP_001157720.1| tropomyosin alpha-1 chain isoform 1 [Mus mus... 172 6e-43
>ref|NP_001001491.1| tropomyosin alpha-4 chain [Mus musculus].
Length = 248
Score = 271 bits (693), Expect = 7e-73
Identities = 157/248 (63%), Positives = 160/248 (64%)
Frame = +2
Query: 248 MAGLNSLEAVKRKIXXXXXXXXXXXXXXXGLQRELDGERERREKAEGDVAALNRRIQLVE 427
MAGLNSLEAVKRKI GLQRELDGERERREKAEGD AALNRRIQL+E
Sbjct: 1 MAGLNSLEAVKRKIQALQQQADDAEDRAQGLQRELDGERERREKAEGDAAALNRRIQLLE 60
Query: 428 EELDRAQERXXXXXXXXXXXXXXXXXXXRGMKVIENRAMKDEEKMEIQEMQLKEAKHIAE 607
EELDRAQE+ RGMKVIENRAMKDEEKMEI EMQLKEAKHI +
Sbjct: 61 EELDRAQEQLATALQNLEEAEKAADESERGMKVIENRAMKDEEKMEILEMQLKEAKHITD 120
Query: 608 EADRKYEEVARKLVIXXXXXXXXXXXXXVSELKCGDLEEELKNVTNNLXXXXXXXXXXXX 787
EADRKYEEVARKLVI VSELKCGDLEEELKNVTNNL
Sbjct: 121 EADRKYEEVARKLVILEGELKRAEERAEVSELKCGDLEEELKNVTNNLKSLEAASEKYSE 180
Query: 788 XXXXXXXXXXXXSDKLKXXXXXXXXXXXXXXKLEKTIDDLEEKLAQAKEENVGLHQTLDQ 967
SDKLK KLEKTIDDLEEKLAQAKEENVGLHQTLDQ
Sbjct: 181 KEDKYEEEIKLLSDKLKEAETRAEFAERTVSKLEKTIDDLEEKLAQAKEENVGLHQTLDQ 240
Query: 968 TLNELNCI 991
TLNELNCI
Sbjct: 241 TLNELNCI 248
>ref|NP_001157724.1| tropomyosin alpha-1 chain isoform 6 [Mus musculus].
Length = 248
Score = 223 bits (569), Expect = 2e-58
Identities = 134/246 (54%), Positives = 147/246 (59%)
Frame = +2
Query: 248 MAGLNSLEAVKRKIXXXXXXXXXXXXXXXGLQRELDGERERREKAEGDVAALNRRIQLVE 427
MAG +SLEAV+RKI LQRELD ER+ RE AE DVA+LNRRIQLVE
Sbjct: 1 MAGSSSLEAVRRKIRSLQEQADAAEERAGSLQRELDQERKLRETAEADVASLNRRIQLVE 60
Query: 428 EELDRAQERXXXXXXXXXXXXXXXXXXXRGMKVIENRAMKDEEKMEIQEMQLKEAKHIAE 607
EELDRAQER RGMKVIE+RA KDEEKMEIQE+QLKEAKHIAE
Sbjct: 61 EELDRAQERLATALQKLEEAEKAADESERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAE 120
Query: 608 EADRKYEEVARKLVIXXXXXXXXXXXXXVSELKCGDLEEELKNVTNNLXXXXXXXXXXXX 787
+ADRKYEEVARKLVI +SE KC +LEEELK VTNNL
Sbjct: 121 DADRKYEEVARKLVIIESDLERAEERAELSEGKCAELEEELKTVTNNLKSLEAQAEKYSQ 180
Query: 788 XXXXXXXXXXXXSDKLKXXXXXXXXXXXXXXKLEKTIDDLEEKLAQAKEENVGLHQTLDQ 967
SDKLK KLEK+IDDLEEK+A AKEEN+ +HQ LDQ
Sbjct: 181 KEDKYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEEKVAHAKEENLSMHQMLDQ 240
Query: 968 TLNELN 985
TL ELN
Sbjct: 241 TLLELN 246
>ref|NP_001157725.1| tropomyosin alpha-1 chain isoform 7 [Mus musculus].
Length = 248
Score = 205 bits (521), Expect = 7e-53
Identities = 126/246 (51%), Positives = 142/246 (57%)
Frame = +2
Query: 248 MAGLNSLEAVKRKIXXXXXXXXXXXXXXXGLQRELDGERERREKAEGDVAALNRRIQLVE 427
MAG +SLEAV+RKI LQRELD ER+ RE AE DVA+LNRRIQLVE
Sbjct: 1 MAGSSSLEAVRRKIRSLQEQADAAEERAGSLQRELDQERKLRETAEADVASLNRRIQLVE 60
Query: 428 EELDRAQERXXXXXXXXXXXXXXXXXXXRGMKVIENRAMKDEEKMEIQEMQLKEAKHIAE 607
EELDRAQER RGMKVIE+RA KDEEKMEIQE+QLKEAKHIAE
Sbjct: 61 EELDRAQERLATALQKLEEAEKAADESERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAE 120
Query: 608 EADRKYEEVARKLVIXXXXXXXXXXXXXVSELKCGDLEEELKNVTNNLXXXXXXXXXXXX 787
+ADRKYEEVARKLVI +SE + LEE+L+ + L
Sbjct: 121 DADRKYEEVARKLVIIESDLERAEERAELSEGQVRQLEEQLRIMDQTLKALMAAEDKYSQ 180
Query: 788 XXXXXXXXXXXXSDKLKXXXXXXXXXXXXXXKLEKTIDDLEEKLAQAKEENVGLHQTLDQ 967
SDKLK KLEK+IDDLEEK+A AKEEN+ +HQ LDQ
Sbjct: 181 KEDKYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEEKVAHAKEENLSMHQMLDQ 240
Query: 968 TLNELN 985
TL ELN
Sbjct: 241 TLLELN 246
>ref|NP_001157726.1| tropomyosin alpha-1 chain isoform 8 [Mus musculus].
Length = 248
Score = 200 bits (509), Expect = 2e-51
Identities = 123/248 (49%), Positives = 140/248 (56%)
Frame = +2
Query: 248 MAGLNSLEAVKRKIXXXXXXXXXXXXXXXGLQRELDGERERREKAEGDVAALNRRIQLVE 427
MAG +SLEAV+RKI LQRELD ER+ RE AE DVA+LNRRIQLVE
Sbjct: 1 MAGSSSLEAVRRKIRSLQEQADAAEERAGSLQRELDQERKLRETAEADVASLNRRIQLVE 60
Query: 428 EELDRAQERXXXXXXXXXXXXXXXXXXXRGMKVIENRAMKDEEKMEIQEMQLKEAKHIAE 607
EELDRAQER RGMKVIE+RA KDEEKMEIQE+QLKEAKHIAE
Sbjct: 61 EELDRAQERLATALQKLEEAEKAADESERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAE 120
Query: 608 EADRKYEEVARKLVIXXXXXXXXXXXXXVSELKCGDLEEELKNVTNNLXXXXXXXXXXXX 787
+ADRKYEEVARKLVI +SE KC +LEEELK VTNNL
Sbjct: 121 DADRKYEEVARKLVIIESDLERAEERAELSEGKCAELEEELKTVTNNLKSLEAQAEKYSQ 180
Query: 788 XXXXXXXXXXXXSDKLKXXXXXXXXXXXXXXKLEKTIDDLEEKLAQAKEENVGLHQTLDQ 967
SDKLK KLEK+IDDLE++L K + + + LD
Sbjct: 181 KEDKYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEDELYAQKLKYKAISEELDH 240
Query: 968 TLNELNCI 991
LN++ I
Sbjct: 241 ALNDMTSI 248
>ref|NP_001157728.1| tropomyosin alpha-1 chain isoform 10 [Mus musculus].
Length = 245
Score = 199 bits (505), Expect = 5e-51
Identities = 124/244 (50%), Positives = 137/244 (56%)
Frame = +2
Query: 248 MAGLNSLEAVKRKIXXXXXXXXXXXXXXXGLQRELDGERERREKAEGDVAALNRRIQLVE 427
MAG +SLEAV+RKI LQRELD ER+ RE AE DVA+LNRRIQLVE
Sbjct: 1 MAGSSSLEAVRRKIRSLQEQADAAEERAGSLQRELDQERKLRETAEADVASLNRRIQLVE 60
Query: 428 EELDRAQERXXXXXXXXXXXXXXXXXXXRGMKVIENRAMKDEEKMEIQEMQLKEAKHIAE 607
EELDRAQER RGMKVIE+RA KDEEKMEIQE+QLKEAKHIAE
Sbjct: 61 EELDRAQERLATALQKLEEAEKAADESERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAE 120
Query: 608 EADRKYEEVARKLVIXXXXXXXXXXXXXVSELKCGDLEEELKNVTNNLXXXXXXXXXXXX 787
+ADRKYEEVARKLVI +SE KC +LEEELK VTNNL
Sbjct: 121 DADRKYEEVARKLVIIESDLERAEERAELSEGKCAELEEELKTVTNNLKSLEAQAEKYSQ 180
Query: 788 XXXXXXXXXXXXSDKLKXXXXXXXXXXXXXXKLEKTIDDLEEKLAQAKEENVGLHQTLDQ 967
SDKLK KLEK+IDDLE++L E+N L L
Sbjct: 181 KEDKYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEDQLYHQLEQNRRLTNELKL 240
Query: 968 TLNE 979
LNE
Sbjct: 241 ALNE 244
>ref|NP_001157721.1| tropomyosin alpha-1 chain isoform 2 [Mus musculus].
Length = 284
Score = 195 bits (495), Expect = 7e-50
Identities = 115/207 (55%), Positives = 125/207 (60%)
Frame = +2
Query: 365 ERREKAEGDVAALNRRIQLVEEELDRAQERXXXXXXXXXXXXXXXXXXXRGMKVIENRAM 544
E KAE DVA+LNRRIQLVEEELDRAQER RGMKVIE+RA
Sbjct: 76 ETAAKAEADVASLNRRIQLVEEELDRAQERLATALQKLEEAEKAADESERGMKVIESRAQ 135
Query: 545 KDEEKMEIQEMQLKEAKHIAEEADRKYEEVARKLVIXXXXXXXXXXXXXVSELKCGDLEE 724
KDEEKMEIQE+QLKEAKHIAE+ADRKYEEVARKLVI +SE KC +LEE
Sbjct: 136 KDEEKMEIQEIQLKEAKHIAEDADRKYEEVARKLVIIESDLERAEERAELSEGKCAELEE 195
Query: 725 ELKNVTNNLXXXXXXXXXXXXXXXXXXXXXXXXSDKLKXXXXXXXXXXXXXXKLEKTIDD 904
ELK VTNNL SDKLK KLEK+IDD
Sbjct: 196 ELKTVTNNLKSLEAQAEKYSQKEDKYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDD 255
Query: 905 LEEKLAQAKEENVGLHQTLDQTLNELN 985
LEEK+A AKEEN+ +HQ LDQTL ELN
Sbjct: 256 LEEKVAHAKEENLSMHQMLDQTLLELN 282
>ref|NP_077745.2| tropomyosin alpha-1 chain isoform 3 [Mus musculus].
Length = 284
Score = 195 bits (495), Expect = 7e-50
Identities = 115/215 (53%), Positives = 129/215 (60%)
Frame = +2
Query: 341 QRELDGERERREKAEGDVAALNRRIQLVEEELDRAQERXXXXXXXXXXXXXXXXXXXRGM 520
Q +L+ ++ AE DVA+LNRRIQLVEEELDRAQER RGM
Sbjct: 68 QEKLELAEKKATDAEADVASLNRRIQLVEEELDRAQERLATALQKLEEAEKAADESERGM 127
Query: 521 KVIENRAMKDEEKMEIQEMQLKEAKHIAEEADRKYEEVARKLVIXXXXXXXXXXXXXVSE 700
KVIE+RA KDEEKMEIQE+QLKEAKHIAE+ADRKYEEVARKLVI +SE
Sbjct: 128 KVIESRAQKDEEKMEIQEIQLKEAKHIAEDADRKYEEVARKLVIIESDLERAEERAELSE 187
Query: 701 LKCGDLEEELKNVTNNLXXXXXXXXXXXXXXXXXXXXXXXXSDKLKXXXXXXXXXXXXXX 880
KC +LEEELK VTNNL SDKLK
Sbjct: 188 GKCAELEEELKTVTNNLKSLEAQAEKYSQKEDKYEEEIKVLSDKLKEAETRAEFAERSVT 247
Query: 881 KLEKTIDDLEEKLAQAKEENVGLHQTLDQTLNELN 985
KLEK+IDDLEEK+A AKEEN+ +HQ LDQTL ELN
Sbjct: 248 KLEKSIDDLEEKVAHAKEENLSMHQMLDQTLLELN 282
>ref|NP_001157722.1| tropomyosin alpha-1 chain isoform 4 [Mus musculus].
Length = 284
Score = 176 bits (447), Expect = 3e-44
Identities = 107/215 (49%), Positives = 124/215 (57%)
Frame = +2
Query: 341 QRELDGERERREKAEGDVAALNRRIQLVEEELDRAQERXXXXXXXXXXXXXXXXXXXRGM 520
Q +L+ ++ AE DVA+LNRRIQLVEEELDRAQER RGM
Sbjct: 68 QEKLELAEKKATDAEADVASLNRRIQLVEEELDRAQERLATALQKLEEAEKAADESERGM 127
Query: 521 KVIENRAMKDEEKMEIQEMQLKEAKHIAEEADRKYEEVARKLVIXXXXXXXXXXXXXVSE 700
KVIE+RA KDEEKMEIQE+QLKEAKHIAE+ADRKYEEVARKLVI +SE
Sbjct: 128 KVIESRAQKDEEKMEIQEIQLKEAKHIAEDADRKYEEVARKLVIIESDLERAEERAELSE 187
Query: 701 LKCGDLEEELKNVTNNLXXXXXXXXXXXXXXXXXXXXXXXXSDKLKXXXXXXXXXXXXXX 880
+ LEE+L+ + L SDKLK
Sbjct: 188 GQVRQLEEQLRIMDQTLKALMAAEDKYSQKEDKYEEEIKVLSDKLKEAETRAEFAERSVT 247
Query: 881 KLEKTIDDLEEKLAQAKEENVGLHQTLDQTLNELN 985
KLEK+IDDLEEK+A AKEEN+ +HQ LDQTL ELN
Sbjct: 248 KLEKSIDDLEEKVAHAKEENLSMHQMLDQTLLELN 282
>ref|NP_033442.2| tropomyosin beta chain [Mus musculus].
Length = 284
Score = 176 bits (447), Expect = 3e-44
Identities = 104/217 (47%), Positives = 123/217 (56%)
Frame = +2
Query: 341 QRELDGERERREKAEGDVAALNRRIQLVEEELDRAQERXXXXXXXXXXXXXXXXXXXRGM 520
Q +L+ ++ AE DVA+LNRRIQLVEEELDRAQER RGM
Sbjct: 68 QEKLEQAEKKATDAEADVASLNRRIQLVEEELDRAQERLATALQKLEEAEKAADESERGM 127
Query: 521 KVIENRAMKDEEKMEIQEMQLKEAKHIAEEADRKYEEVARKLVIXXXXXXXXXXXXXVSE 700
KVIENRAMKDEEKME+QEMQLKEAKHIAE++DRKYEEVARKLVI V+E
Sbjct: 128 KVIENRAMKDEEKMELQEMQLKEAKHIAEDSDRKYEEVARKLVILEGELERSEERAEVAE 187
Query: 701 LKCGDLEEELKNVTNNLXXXXXXXXXXXXXXXXXXXXXXXXSDKLKXXXXXXXXXXXXXX 880
KCGDLEEELK VTNNL +KLK
Sbjct: 188 SKCGDLEEELKIVTNNLKSLEAQADKYSTKEDKYEEEIKLLEEKLKEAETRAEFAERSVA 247
Query: 881 KLEKTIDDLEEKLAQAKEENVGLHQTLDQTLNELNCI 991
KLEKTIDDLE+++ K + + + LD LN++ +
Sbjct: 248 KLEKTIDDLEDEVYAQKMKYKAISEELDNALNDITSL 284
>ref|NP_001157720.1| tropomyosin alpha-1 chain isoform 1 [Mus musculus].
Length = 284
Score = 172 bits (435), Expect = 6e-43
Identities = 104/217 (47%), Positives = 122/217 (56%)
Frame = +2
Query: 341 QRELDGERERREKAEGDVAALNRRIQLVEEELDRAQERXXXXXXXXXXXXXXXXXXXRGM 520
Q +L+ ++ AE DVA+LNRRIQLVEEELDRAQER RGM
Sbjct: 68 QEKLELAEKKATDAEADVASLNRRIQLVEEELDRAQERLATALQKLEEAEKAADESERGM 127
Query: 521 KVIENRAMKDEEKMEIQEMQLKEAKHIAEEADRKYEEVARKLVIXXXXXXXXXXXXXVSE 700
KVIE+RA KDEEKMEIQE+QLKEAKHIAE+ADRKYEEVARKLVI +SE
Sbjct: 128 KVIESRAQKDEEKMEIQEIQLKEAKHIAEDADRKYEEVARKLVIIESDLERAEERAELSE 187
Query: 701 LKCGDLEEELKNVTNNLXXXXXXXXXXXXXXXXXXXXXXXXSDKLKXXXXXXXXXXXXXX 880
KC +LEEELK VTNNL SDKLK
Sbjct: 188 GKCAELEEELKTVTNNLKSLEAQAEKYSQKEDKYEEEIKVLSDKLKEAETRAEFAERSVT 247
Query: 881 KLEKTIDDLEEKLAQAKEENVGLHQTLDQTLNELNCI 991
KLEK+IDDLE++L K + + + LD LN++ I
Sbjct: 248 KLEKSIDDLEDELYAQKLKYKAISEELDHALNDMTSI 284
Database: RefSeq44_MP.fasta
Posted date: Nov 15, 2010 4:36 PM
Number of letters in database: 15,452,059
Number of sequences in database: 29,866
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 29866
Number of Hits to DB: 26,019,834
Number of extensions: 538560
Number of successful extensions: 3137
Number of sequences better than 1.0e-05: 13
Number of HSP's gapped: 3056
Number of HSP's successfully gapped: 13
Length of query: 408
Length of database: 15,452,059
Length adjustment: 104
Effective length of query: 304
Effective length of database: 12,345,995
Effective search space: 3753182480
Effective search space used: 3753182480
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel44
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20070806C-006847
(1224 letters)
Database: RefSeq44_SP.fasta
20,576 sequences; 9,542,844 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_999500.1| tropomyosin alpha-4 chain [Sus scrofa]. 281 6e-76
Alignment gi|NP_001001632.1| tropomyosin alpha-3 chain [Sus scrofa]. 197 8e-51
Alignment gi|NP_001123419.1| tropomyosin beta chain [Sus scrofa]. 177 9e-45
Alignment gi|NP_001090952.1| tropomyosin alpha-1 chain [Sus scrofa]. 172 4e-43
>ref|NP_999500.1| tropomyosin alpha-4 chain [Sus scrofa].
Length = 248
Score = 281 bits (718), Expect = 6e-76
Identities = 163/248 (65%), Positives = 163/248 (65%)
Frame = +2
Query: 248 MAGLNSLEAVKRKIXXXXXXXXXXXXXXXGLQRELDGERERREKAEGDVAALNRRIQLVE 427
MAGLNSLEAVKRKI GLQRELDGERERREKAEGDVAALNRRIQLVE
Sbjct: 1 MAGLNSLEAVKRKIQALQQQADEAEDRAQGLQRELDGERERREKAEGDVAALNRRIQLVE 60
Query: 428 EELDRAQERXXXXXXXXXXXXXXXXXXXRGMKVIENRAMKDEEKMEIQEMQLKEAKHIAE 607
EELDRAQER RGMKVIENRAMKDEEKMEIQEMQLKEAKHIAE
Sbjct: 61 EELDRAQERLATALQKLEEAEKAADESERGMKVIENRAMKDEEKMEIQEMQLKEAKHIAE 120
Query: 608 EADRKYEEVARKLVIXXXXXXXXXXXXXVSELKCGDLEEELKNVTNNLXXXXXXXXXXXX 787
EADRKYEEVARKLVI VSELKCGDLEEELKNVTNNL
Sbjct: 121 EADRKYEEVARKLVILEGELERAEERAEVSELKCGDLEEELKNVTNNLKSLEAASEKYSE 180
Query: 788 XXXXXXXXXXXXSDKLKXXXXXXXXXXXXXXKLEKTIDDLEEKLAQAKEENVGLHQTLDQ 967
SDKLK KLEKTIDDLEEKLAQAKEENVGLHQTLDQ
Sbjct: 181 KEDKYEEEIKLLSDKLKEAETRAEFAERTVAKLEKTIDDLEEKLAQAKEENVGLHQTLDQ 240
Query: 968 TLNELNCI 991
TLNELNCI
Sbjct: 241 TLNELNCI 248
>ref|NP_001001632.1| tropomyosin alpha-3 chain [Sus scrofa].
Length = 248
Score = 197 bits (501), Expect = 8e-51
Identities = 116/246 (47%), Positives = 143/246 (58%)
Frame = +2
Query: 248 MAGLNSLEAVKRKIXXXXXXXXXXXXXXXGLQRELDGERERREKAEGDVAALNRRIQLVE 427
MAG+ ++EAVKRKI LQRE++GER RE+AE +VA+LNRRIQLVE
Sbjct: 1 MAGITTIEAVKRKIQVLQQQADDAEERAERLQREVEGERRAREQAEAEVASLNRRIQLVE 60
Query: 428 EELDRAQERXXXXXXXXXXXXXXXXXXXRGMKVIENRAMKDEEKMEIQEMQLKEAKHIAE 607
EELDRAQER RGMKVIENRA+KDEEKME+QE+QLKEAKHIAE
Sbjct: 61 EELDRAQERLATALQKLEEAEKAADESERGMKVIENRALKDEEKMELQEIQLKEAKHIAE 120
Query: 608 EADRKYEEVARKLVIXXXXXXXXXXXXXVSELKCGDLEEELKNVTNNLXXXXXXXXXXXX 787
EADRKYEEVARKLVI ++E +C +++E+++ + NL
Sbjct: 121 EADRKYEEVARKLVIIEGDLERTEERAELAESRCREMDEQIRLMDQNLKCLSAAEEKYSQ 180
Query: 788 XXXXXXXXXXXXSDKLKXXXXXXXXXXXXXXKLEKTIDDLEEKLAQAKEENVGLHQTLDQ 967
+DKLK KLEKTIDDLE+KL KEE++ + LDQ
Sbjct: 181 KEDKYEEEIKILTDKLKEAETRAEFAERSVAKLEKTIDDLEDKLKCTKEEHLCTQRMLDQ 240
Query: 968 TLNELN 985
TL +LN
Sbjct: 241 TLLDLN 246
>ref|NP_001123419.1| tropomyosin beta chain [Sus scrofa].
Length = 287
Score = 177 bits (449), Expect = 9e-45
Identities = 109/218 (50%), Positives = 124/218 (56%), Gaps = 3/218 (1%)
Frame = +2
Query: 341 QRELDGERERREKAEGDVAALNRRIQLVEEELDRAQERXXXXXXXXXXXXXXXXXXXRGM 520
Q +L+ ++ AE DVA+LNRRIQLVEEELDRAQER RG+
Sbjct: 68 QEKLEQAEKKATDAEADVASLNRRIQLVEEELDRAQERLATALQKLEEAEKAADESERGL 127
Query: 521 KVIENRAMKDEEKMEIQEMQ---LKEAKHIAEEADRKYEEVARKLVIXXXXXXXXXXXXX 691
KVIENRAMKDEEKME+QEMQ LKEAKHIAE++DRKYEEVARKLVI
Sbjct: 128 KVIENRAMKDEEKMELQEMQEMQLKEAKHIAEDSDRKYEEVARKLVILEGELERSEERAE 187
Query: 692 VSELKCGDLEEELKNVTNNLXXXXXXXXXXXXXXXXXXXXXXXXSDKLKXXXXXXXXXXX 871
V+E + LEEEL+ + L +KLK
Sbjct: 188 VAESRARQLEEELRTMDQALKSLMASEEEYSTKEDKYEEEIKLLEEKLKEAETRAEFAER 247
Query: 872 XXXKLEKTIDDLEEKLAQAKEENVGLHQTLDQTLNELN 985
KLEKTIDDLEE LA AKEENV +HQTLDQTL ELN
Sbjct: 248 SVAKLEKTIDDLEETLASAKEENVEIHQTLDQTLLELN 285
>ref|NP_001090952.1| tropomyosin alpha-1 chain [Sus scrofa].
Length = 284
Score = 172 bits (435), Expect = 4e-43
Identities = 104/217 (47%), Positives = 122/217 (56%)
Frame = +2
Query: 341 QRELDGERERREKAEGDVAALNRRIQLVEEELDRAQERXXXXXXXXXXXXXXXXXXXRGM 520
Q +L+ ++ AE DVA+LNRRIQLVEEELDRAQER RGM
Sbjct: 68 QEKLELAEKKATDAEADVASLNRRIQLVEEELDRAQERLATALQKLEEAEKAADESERGM 127
Query: 521 KVIENRAMKDEEKMEIQEMQLKEAKHIAEEADRKYEEVARKLVIXXXXXXXXXXXXXVSE 700
KVIE+RA KDEEKMEIQE+QLKEAKHIAE+ADRKYEEVARKLVI +SE
Sbjct: 128 KVIESRAQKDEEKMEIQEIQLKEAKHIAEDADRKYEEVARKLVIIESDLERAEERAELSE 187
Query: 701 LKCGDLEEELKNVTNNLXXXXXXXXXXXXXXXXXXXXXXXXSDKLKXXXXXXXXXXXXXX 880
KC +LEEELK VTNNL SDKLK
Sbjct: 188 GKCAELEEELKTVTNNLKSLEAQAEKYSQKEDKYEEEIKVLSDKLKEAETRAEFAERSVT 247
Query: 881 KLEKTIDDLEEKLAQAKEENVGLHQTLDQTLNELNCI 991
KLEK+IDDLE++L K + + + LD LN++ I
Sbjct: 248 KLEKSIDDLEDELYAQKLKYKAISEELDHALNDMTSI 284
Database: RefSeq44_SP.fasta
Posted date: Nov 15, 2010 4:36 PM
Number of letters in database: 9,542,844
Number of sequences in database: 20,576
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 20576
Number of Hits to DB: 16,453,644
Number of extensions: 353126
Number of successful extensions: 2010
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 1968
Number of HSP's successfully gapped: 4
Length of query: 408
Length of database: 9,542,844
Length adjustment: 100
Effective length of query: 308
Effective length of database: 7,485,244
Effective search space: 2305455152
Effective search space used: 2305455152
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)