Search to RefSeqBP_Rel44
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20070806C-007549
(983 letters)
Database: RefSeq44_BP.fasta
33,615 sequences; 18,071,151 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001035696.1| 2',5'-oligoadenylate synthetase 1 [Bos tauru... 422 e-118
Alignment gi|NP_835209.1| 2',5'-oligoadenylate synthetase 1, 40/46kDa [Bo... 418 e-117
Alignment gi|NP_001025017.1| 2',5'-oligoadenylate synthetase 1 [Bos tauru... 381 e-106
Alignment gi|NP_001019728.1| 2'-5'-oligoadenylate synthase 2 [Bos taurus]. 273 2e-73
Alignment gi|NP_001075128.1| 59 kDa 2'-5'-oligoadenylate synthase-like pr... 181 9e-46
>ref|NP_001035696.1| 2',5'-oligoadenylate synthetase 1 [Bos taurus].
Length = 389
Score = 422 bits (1086), Expect = e-118
Identities = 210/297 (70%), Positives = 239/297 (80%)
Frame = +1
Query: 91 DTPVRDLDKFIEDHLLPNTCFRTQVKEAIDIVCGFLKERCFQGTADPVRXXXXXXXXXXX 270
+TP LDKFIEDHLLP+ FR QVKEAIDI+C FLKERCF+ VR
Sbjct: 5 NTPAGSLDKFIEDHLLPDEEFRMQVKEAIDIICTFLKERCFRCAPHRVRVSKVVKGGSSG 64
Query: 271 XXTTLRGRSDADLVVFLTKLTSFEDQLQLREEFIQEIRRQLEACQKEQKFKVTFEVQTPR 450
TTLRGRSDADLVVFLT LTSF++QL+ R EFI+EIRRQLEACQ+E+ F+V FEVQ +
Sbjct: 65 KGTTLRGRSDADLVVFLTNLTSFQEQLERRGEFIEEIRRQLEACQREETFEVKFEVQKRQ 124
Query: 451 QENPRALSFVLSSPQLQQEVEFDVLPAFDALGQWTPGYKPNPEIYVQLIKECKSLGKEGE 630
ENPRALSFVL SP+L Q VEFDVLPAFDALGQ T GY+P+ +YV+LI+ECK L +EGE
Sbjct: 125 WENPRALSFVLRSPKLNQAVEFDVLPAFDALGQLTKGYRPDSRVYVRLIQECKYLKREGE 184
Query: 631 FSTCFTELQRDFLRNRPTKLKSLIRLVKHWYQTCKKPHGNKLPPQYALELLTVYAWEQGS 810
FS CFTELQRDFL+NRPTKLKSLIRLVKHWYQ CK+ G LPPQYALELLTVYAWEQG
Sbjct: 185 FSPCFTELQRDFLKNRPTKLKSLIRLVKHWYQLCKEQLGKPLPPQYALELLTVYAWEQGC 244
Query: 811 GKTDFSTAQGFQTVLELVLKHKKLCIFWEAYYNFKNPVVGRYLTEQLKKPRPVILDP 981
KT F TAQGFQTVL+LVLK++KLCI+WE YN +NP++ YLT+QL KPRPVILDP
Sbjct: 245 NKTGFITAQGFQTVLKLVLKYQKLCIYWEKNYNSENPIIEEYLTKQLAKPRPVILDP 301
>ref|NP_835209.1| 2',5'-oligoadenylate synthetase 1, 40/46kDa [Bos taurus].
Length = 352
Score = 418 bits (1075), Expect = e-117
Identities = 207/297 (69%), Positives = 239/297 (80%)
Frame = +1
Query: 91 DTPVRDLDKFIEDHLLPNTCFRTQVKEAIDIVCGFLKERCFQGTADPVRXXXXXXXXXXX 270
DTP LDKFIEDHLL N FRTQVK+AIDI+C FLKERCF+ P R
Sbjct: 6 DTPAESLDKFIEDHLLSNEEFRTQVKQAIDIICTFLKERCFR--CAPHRVSKVVKGGSSG 63
Query: 271 XXTTLRGRSDADLVVFLTKLTSFEDQLQLREEFIQEIRRQLEACQKEQKFKVTFEVQTPR 450
TTLRGRSDADLVVFLT LTSF +QL+ R EFI+EIRRQLEACQ+E+ F+V EVQ +
Sbjct: 64 KGTTLRGRSDADLVVFLTNLTSFREQLERRGEFIEEIRRQLEACQREKTFEVKSEVQKRQ 123
Query: 451 QENPRALSFVLSSPQLQQEVEFDVLPAFDALGQWTPGYKPNPEIYVQLIKECKSLGKEGE 630
ENPRALSFVL SP+L QEVEFDVLPAFDALGQ T GY+P+P+IYV+LI+EC++ +EGE
Sbjct: 124 WENPRALSFVLRSPKLDQEVEFDVLPAFDALGQLTKGYRPDPQIYVKLIQECENQRREGE 183
Query: 631 FSTCFTELQRDFLRNRPTKLKSLIRLVKHWYQTCKKPHGNKLPPQYALELLTVYAWEQGS 810
FS CFTELQRDFL+ RP KLKSLIRLVKHWYQ CK H N LPPQYALELLTVYAWEQGS
Sbjct: 184 FSPCFTELQRDFLKERPAKLKSLIRLVKHWYQLCKMKHKNNLPPQYALELLTVYAWEQGS 243
Query: 811 GKTDFSTAQGFQTVLELVLKHKKLCIFWEAYYNFKNPVVGRYLTEQLKKPRPVILDP 981
K +FSTAQGF+TVLEL+LKH+ LCI+W+ YY+ +N ++ +YL +QL KPRPVILDP
Sbjct: 244 AKPEFSTAQGFRTVLELILKHQDLCIYWKKYYDTENSIIRQYLKKQLAKPRPVILDP 300
>ref|NP_001025017.1| 2',5'-oligoadenylate synthetase 1 [Bos taurus].
Length = 362
Score = 381 bits (979), Expect = e-106
Identities = 190/296 (64%), Positives = 224/296 (75%)
Frame = +1
Query: 94 TPVRDLDKFIEDHLLPNTCFRTQVKEAIDIVCGFLKERCFQGTADPVRXXXXXXXXXXXX 273
T LDKFI+DHLLP+ F+ QV EAIDI+C FLKE CFQ + PVR
Sbjct: 7 TQANKLDKFIKDHLLPHEEFQRQVNEAIDIICTFLKETCFQESTHPVRVSKVVKGGSSGK 66
Query: 274 XTTLRGRSDADLVVFLTKLTSFEDQLQLREEFIQEIRRQLEACQKEQKFKVTFEVQTPRQ 453
TTL+ SDADLVVFLT LTSF++ + R FI+EIRRQLEA Q+++ F+V FEV R+
Sbjct: 67 GTTLKDLSDADLVVFLTNLTSFQENFEHRVRFIKEIRRQLEAYQRQKTFEVEFEVLKQRK 126
Query: 454 ENPRALSFVLSSPQLQQEVEFDVLPAFDALGQWTPGYKPNPEIYVQLIKECKSLGKEGEF 633
RALSFVL SP Q V+FDVLPAFDAL Q T YKPNP+IYVQLI+EC++L +EGEF
Sbjct: 127 RKRRALSFVLRSPWFCQGVKFDVLPAFDALAQVTEDYKPNPQIYVQLIQECENLRREGEF 186
Query: 634 STCFTELQRDFLRNRPTKLKSLIRLVKHWYQTCKKPHGNKLPPQYALELLTVYAWEQGSG 813
S CFTELQR FL+ RP KLKSLIRLVKHWYQ CKK HG KLP QYALELLT+YAWEQ
Sbjct: 187 SPCFTELQRAFLKERPAKLKSLIRLVKHWYQQCKKRHGKKLPSQYALELLTIYAWEQEGS 246
Query: 814 KTDFSTAQGFQTVLELVLKHKKLCIFWEAYYNFKNPVVGRYLTEQLKKPRPVILDP 981
KT F TA+GF+TVLELVLKH+ LCI+W+ YY+F+NP++ + L QL+KPRPVILDP
Sbjct: 247 KTKFRTAEGFRTVLELVLKHQDLCIYWKKYYDFENPIITQCLKRQLEKPRPVILDP 302
>ref|NP_001019728.1| 2'-5'-oligoadenylate synthase 2 [Bos taurus].
Length = 714
Score = 273 bits (697), Expect = 2e-73
Identities = 142/300 (47%), Positives = 196/300 (65%), Gaps = 4/300 (1%)
Frame = +1
Query: 94 TPVRDLDKFIEDHLLPNTCFRTQVKEAIDIVCGFLKERCFQGTADPVRXXXXXXXXXXXX 273
TP LDKF++D L PN F+ Q+K+A+ I+C FL+E CF+ + ++
Sbjct: 344 TPGHLLDKFVKDFLQPNQTFQDQIKKALKIICSFLEENCFRHSTTKIQVIQGGSTVKG-- 401
Query: 274 XTTLRGRSDADLVVFLTKLTSFEDQLQLREEFIQEIRRQLEACQKEQKFKVTFEVQTPRQ 453
T L+ SDA LVVF L S+ R I+EI QLEAC++E+ F+V FE+ +
Sbjct: 402 -TALKTGSDASLVVFANSLKSYTSPKNERYNIIKEIHEQLEACRQEKDFEVKFEIS--KW 458
Query: 454 ENPRALSFVLSSPQLQQEVEFDVLPAFDALGQWTPGYKPNPEIYVQLIKECK--SLGKEG 627
+ P LSF L S L + V+FDVLPAF+ALG+ G P+P Y +LI K + EG
Sbjct: 459 KPPWVLSFTLKSKVLNESVDFDVLPAFNALGELKSGSTPSPRTYTELIHLYKPSDVFLEG 518
Query: 628 EFSTCFTELQRDFLRNRPTKLKSLIRLVKHWYQTCKKPHGNK--LPPQYALELLTVYAWE 801
EFS CFT+LQR+F+R+ P KLK LIRL+KHWY+ C+K K LPP+YALELLT+YAWE
Sbjct: 519 EFSVCFTKLQRNFVRSLPLKLKDLIRLLKHWYKGCEKKLKQKGSLPPKYALELLTIYAWE 578
Query: 802 QGSGKTDFSTAQGFQTVLELVLKHKKLCIFWEAYYNFKNPVVGRYLTEQLKKPRPVILDP 981
+GSG DF A+GF+TVLELV++++ LC+FW Y+F + ++ +L Q+++ RPVILDP
Sbjct: 579 KGSGAQDFDMAEGFRTVLELVIQYQHLCVFWTVNYSFDDEILRNFLLGQIRRTRPVILDP 638
Score = 205 bits (521), Expect = 6e-53
Identities = 121/299 (40%), Positives = 169/299 (56%), Gaps = 2/299 (0%)
Frame = +1
Query: 91 DTPVRDLDKFIEDHLLPNTCFRTQVKEAIDIVCGFLKERCFQGTADPVRXXXXXXXXXXX 270
+ P L++FI++HL P+ + + +++D +C L+E C T V
Sbjct: 10 EKPSEKLEEFIQNHLRPSEDCQKDIDQSVDTICEVLQEPCPSLTVTGVAKGGSYGRR--- 66
Query: 271 XXTTLRGRSDADLVVFLTKLTSFEDQLQLREEFIQEIRRQLEACQKEQKFKVTFEVQTPR 450
T LRG SD LVVF L F+DQ + + E + +I Q++ C+ K E+Q
Sbjct: 67 --TVLRGNSDGILVVFFGDLEQFQDQEKRQYELLSKIWAQMKHCESTWKLAAKMELQNTN 124
Query: 451 QENPRALSFVLSSPQLQQEVEFDVLPAFDALGQWTPGYKPNPEIYVQLIKECKSL-GKEG 627
+ + ++ LS+ Q Q + F+VLPAF+ALG K + Y +L + + + G
Sbjct: 125 RSS--RVTIQLSTKQ--QSITFNVLPAFNALGL---SEKSSLWTYRELKRSLDMVKARPG 177
Query: 628 EFSTCFTELQRDFLRNRPTKLKSLIRLVKHWYQTCKKPHGN-KLPPQYALELLTVYAWEQ 804
EFS CFTELQ F N P+KLK LI LVKHW+Q C++ N L P YALELLTVYAWEQ
Sbjct: 178 EFSVCFTELQEKFFSNYPSKLKDLILLVKHWFQKCQEKLINPSLLPPYALELLTVYAWEQ 237
Query: 805 GSGKTDFSTAQGFQTVLELVLKHKKLCIFWEAYYNFKNPVVGRYLTEQLKKPRPVILDP 981
G G DF A+G +TVL L+ K ++LC++W YNF + V L QL+ PRPVILDP
Sbjct: 238 GCGAEDFDMAEGVRTVLRLIEKQEQLCVYWTVNYNFGDETVRNILLSQLQAPRPVILDP 296
>ref|NP_001075128.1| 59 kDa 2'-5'-oligoadenylate synthase-like protein [Bos taurus].
Length = 352
Score = 181 bits (459), Expect = 9e-46
Identities = 110/308 (35%), Positives = 176/308 (57%), Gaps = 12/308 (3%)
Frame = +1
Query: 91 DTPVRDLDKFIEDHLLPNTCFRTQVKEAIDIVCGFLKERCFQGTAD-PVRXXXXXXXXXX 267
DTP L+ F+ ++ V +A+ V FLK++ F+G +
Sbjct: 9 DTPASRLNSFVAQCQHNIKEWKEDVVKAVQSVEKFLKKQRFRGDHGLDQKVLKVIRVGSF 68
Query: 268 XXXTTLRGRSDADLVVFLTKLTSFEDQLQLREEFIQEIRRQLEACQKEQKFKVTFEVQTP 447
T LR ++ +LV+FL+ +SF+++ + + L C+K F +Q
Sbjct: 69 GNGTVLRNHAEVELVMFLSGFSSFQEEASNHNHH-EHVLSML--CEKLTDFPDLLHLQP- 124
Query: 448 RQENPR-------ALSFVLSSPQLQQEVEFDVLPAFDALGQWTPGYKPNPEIYVQLIKEC 606
+N R A++F + + +++++V ++PA+ L P ++P+PE+YV+LIK C
Sbjct: 125 --QNLRLVHGVTSAVAFTIQTWEMEEQVSVTIVPAYGVLRPSVPNFQPSPEVYVRLIKAC 182
Query: 607 KSLGKEGEFSTCFTELQRDFLRNRPTKLKSLIRLVKHWYQT---CKKPHGNKLPPQYALE 777
++LG FS F+ELQR+F++ +PTKLKSL+RLVKHWY K P +LPP YALE
Sbjct: 183 RTLGY---FSPSFSELQRNFVKYKPTKLKSLLRLVKHWYLEYVKAKCPRA-ELPPMYALE 238
Query: 778 LLTVYAWEQGSGKTD-FSTAQGFQTVLELVLKHKKLCIFWEAYYNFKNPVVGRYLTEQLK 954
LLT+YAWE G+ + + F +G TVL L+ K+++LCI+W YY +NPV+ ++ QLK
Sbjct: 239 LLTIYAWETGTEEKERFRLDKGLVTVLLLLTKYQRLCIYWTKYYTLQNPVIEDFVRNQLK 298
Query: 955 KPRPVILD 978
+ RP+ILD
Sbjct: 299 EKRPIILD 306
Database: RefSeq44_BP.fasta
Posted date: Nov 15, 2010 4:36 PM
Number of letters in database: 18,071,151
Number of sequences in database: 33,615
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33615
Number of Hits to DB: 36,639,729
Number of extensions: 970863
Number of successful extensions: 3563
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 3543
Number of HSP's successfully gapped: 6
Length of query: 327
Length of database: 18,071,151
Length adjustment: 103
Effective length of query: 224
Effective length of database: 14,608,806
Effective search space: 3272372544
Effective search space used: 3272372544
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel44
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20070806C-007549
(983 letters)
Database: RefSeq44_CP.fasta
33,359 sequences; 18,921,627 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001041596.1| 2'-5'-oligoadenylate synthase 1 [Canis lupus... 416 e-116
Alignment gi|NP_001041556.1| 2'-5'-oligoadenylate synthase 3 [Canis lupus... 302 4e-82
Alignment gi|NP_001041599.1| 2'-5'-oligoadenylate synthase 2 [Canis lupus... 286 2e-77
Alignment gi|NP_001041558.1| 59 kDa 2'-5'-oligoadenylate synthase-like pr... 226 3e-59
>ref|NP_001041596.1| 2'-5'-oligoadenylate synthase 1 [Canis lupus familiaris].
Length = 355
Score = 416 bits (1069), Expect = e-116
Identities = 201/297 (67%), Positives = 240/297 (80%)
Frame = +1
Query: 91 DTPVRDLDKFIEDHLLPNTCFRTQVKEAIDIVCGFLKERCFQGTADPVRXXXXXXXXXXX 270
DTP +DLD+FIE++LLP+T FR QVKEAI I+ FLKERCFQG A PVR
Sbjct: 6 DTPAKDLDRFIENYLLPDTQFRRQVKEAIHIISTFLKERCFQGAAHPVRVSKVVKGGSSG 65
Query: 271 XXTTLRGRSDADLVVFLTKLTSFEDQLQLREEFIQEIRRQLEACQKEQKFKVTFEVQTPR 450
TTLRGRSDADLVVFL L SF++QL+ R +FI EI+RQLEACQ+E+ F+V FEVQ+ +
Sbjct: 66 KGTTLRGRSDADLVVFLNNLKSFQEQLEKRGQFIWEIKRQLEACQREETFEVYFEVQSLQ 125
Query: 451 QENPRALSFVLSSPQLQQEVEFDVLPAFDALGQWTPGYKPNPEIYVQLIKECKSLGKEGE 630
E PRALSFVL SPQL + VEFDVLPAFD LGQWT ++PNPE+Y++LI+EC++ G EGE
Sbjct: 126 WEKPRALSFVLKSPQLGEGVEFDVLPAFDVLGQWTNNHRPNPEVYIKLIQECENRGTEGE 185
Query: 631 FSTCFTELQRDFLRNRPTKLKSLIRLVKHWYQTCKKPHGNKLPPQYALELLTVYAWEQGS 810
FSTCFTELQRDFLR RPTK+KSLIRLVKHWYQ CK+ G LPPQYALELLTVYAWE+G+
Sbjct: 186 FSTCFTELQRDFLRQRPTKVKSLIRLVKHWYQKCKQKLGKPLPPQYALELLTVYAWERGN 245
Query: 811 GKTDFSTAQGFQTVLELVLKHKKLCIFWEAYYNFKNPVVGRYLTEQLKKPRPVILDP 981
+T+F TAQGFQTVL+LVL +++LCI W YYNF+ P++ +YL QL KPRPVILDP
Sbjct: 246 HQTEFITAQGFQTVLKLVLNYQQLCIHWTKYYNFETPIIKQYLMRQLAKPRPVILDP 302
>ref|NP_001041556.1| 2'-5'-oligoadenylate synthase 3 [Canis lupus familiaris].
Length = 1087
Score = 302 bits (773), Expect = 4e-82
Identities = 161/299 (53%), Positives = 203/299 (67%), Gaps = 3/299 (1%)
Frame = +1
Query: 94 TPVRDLDKFIEDHLLPNTCFRTQVKEAIDIVCGFLKERCFQGTADPVRXXXXXXXXXXXX 273
TP DLDKFI D L PN F QV +A+D +C FLKE CFQ +A ++
Sbjct: 750 TPAGDLDKFISDFLQPNRQFLAQVNKAVDTICSFLKENCFQNSA--IKVLKVVKGGSLAK 807
Query: 274 XTTLRGRSDADLVVFLTKLTSFEDQLQLREEFIQEIRRQLEACQKEQKFKVTFEVQTPRQ 453
T LRGRSDADLVVFL+ + F +Q R E I EIR QLEACQ++ + +V FE+ P++
Sbjct: 808 GTALRGRSDADLVVFLSCFSQFAEQGNRRAEIISEIRAQLEACQQKMQLEVKFEI--PKR 865
Query: 454 ENPRALSFVLSSP-QLQQEVEFDVLPAFDALGQWTPGYKPNPEIYVQLIKECKSLGKEGE 630
EN R LSF L S L Q V+FDVLPAF+ALGQ Y+P ++YV LI S GE
Sbjct: 866 ENSRVLSFSLKSQTMLDQSVDFDVLPAFNALGQVVSSYRPPSQVYVDLIY---SYNNAGE 922
Query: 631 FSTCFTELQRDFLRNRPTKLKSLIRLVKHWYQTCKK-PHGN-KLPPQYALELLTVYAWEQ 804
+STCFTELQRDF+ +RPTKLKSLIRLVKHWY+ C K P G LPPQ+ LELLTVYAWEQ
Sbjct: 923 YSTCFTELQRDFIISRPTKLKSLIRLVKHWYRQCNKMPRGRGSLPPQHGLELLTVYAWEQ 982
Query: 805 GSGKTDFSTAQGFQTVLELVLKHKKLCIFWEAYYNFKNPVVGRYLTEQLKKPRPVILDP 981
G F+ AQGF+TVLELV ++++L ++W Y+ ++ V +L+ QL++PRP+ILDP
Sbjct: 983 GGQSAQFNMAQGFRTVLELVSQYRQLRVYWTVNYDNEDQTVRDFLSRQLRQPRPIILDP 1041
Score = 237 bits (605), Expect = 1e-62
Identities = 129/300 (43%), Positives = 185/300 (61%), Gaps = 7/300 (2%)
Frame = +1
Query: 103 RDLDKFIEDHLLPNTCFRTQVKEAIDIVCGFLKERCFQGTADPVRXXXXXXXXXXXXXTT 282
+DLD+FI+DHL PN F+ QV +AI+++ G L+E+C + T
Sbjct: 414 KDLDRFIQDHLKPNPQFQKQVGKAINVILGCLREKCVY------KASRVSKGGSFGRGTD 467
Query: 283 LRGRSDADLVVFLTKLTSFEDQLQLREEFIQEIRRQLEACQKEQKFKVTFEVQTPRQENP 462
LRG DA+LV+FL + DQ R E +QE++ QLE+ ++ ++ E P Q P
Sbjct: 468 LRGGCDAELVIFLNCFEDYRDQRARRPEILQEMQAQLESWWQDPVPGLSLEF--PEQTVP 525
Query: 463 RALSFVLSSPQLQQEVEFDVLPAFDALGQWTPGYKPNPEIYVQLIKE-CKSLGKEGEFST 639
AL F L S L+ ++ ++PAFDA+GQ G KP P++Y L++ C+ GE +
Sbjct: 526 EALQFRLVSTALESWMDVCLVPAFDAVGQLCAGAKPAPQVYSTLLQSGCQG----GEHAA 581
Query: 640 CFTELQRDFLRNRPTKLKSLIRLVKHWYQTC------KKPHGNKLPPQYALELLTVYAWE 801
CF EL+R+F+ RP KLKSLI LVKHWY+ ++P LPP YALELLT++AWE
Sbjct: 582 CFAELRRNFVNVRPAKLKSLILLVKHWYRQVAAQNKGQQPACASLPPVYALELLTIFAWE 641
Query: 802 QGSGKTDFSTAQGFQTVLELVLKHKKLCIFWEAYYNFKNPVVGRYLTEQLKKPRPVILDP 981
QG G+ F AQG +TVLELV +H++LC++W Y+F++P + +L QL+KPRP+ILDP
Sbjct: 642 QGCGEDSFKMAQGLKTVLELVQQHQQLCVYWTVNYSFEDPAIRTHLLGQLQKPRPLILDP 701
Score = 215 bits (547), Expect = 6e-56
Identities = 123/299 (41%), Positives = 175/299 (58%), Gaps = 3/299 (1%)
Frame = +1
Query: 94 TPVRDLDKFIEDHLLPNTCFRTQVKEAIDIVCGFLKERCFQGTADPVRXXXXXXXXXXXX 273
TP L + L P+ F+ A+ + L+ER + A P R
Sbjct: 6 TPAAALASLVARRLQPSAEFQRAAWRALGALATTLRERGDRAAAQPWRVLKTAKGGSAGR 65
Query: 274 XTTLRGRSDADLVVFLTKLTSFEDQLQLREEFIQEIRRQLEACQKEQKFKVTFEVQTPRQ 453
T LRG D+++V+FL S++D R E ++++ L++ ++ + FE T Q
Sbjct: 66 GTALRGGCDSEIVIFLDCFKSYKDHSVDRAEILKDLWDLLQSWWQKPIPGLNFE--TLWQ 123
Query: 454 ENPRALSFVLSSPQLQQEVEFDVLPAFDALGQWTPGYKPNPEIYVQLIKE-CKSLGKEGE 630
+ P L F L+S L+ ++ ++PAFDALGQ G KP P++Y L+ C+ GE
Sbjct: 124 DRPGVLQFRLASTDLENWMDVSLVPAFDALGQLCAGAKPAPQVYSTLLHSGCQG----GE 179
Query: 631 FSTCFTELQRDFLRNRPTKLKSLIRLVKHWY-QTCKKPHGNK-LPPQYALELLTVYAWEQ 804
+ CF EL+R+F+ RP KLKSLI LVKHWY Q C++ + LPP YALELLT++AWEQ
Sbjct: 180 HAACFAELRRNFVNVRPAKLKSLILLVKHWYRQVCQEEAKREMLPPAYALELLTIFAWEQ 239
Query: 805 GSGKTDFSTAQGFQTVLELVLKHKKLCIFWEAYYNFKNPVVGRYLTEQLKKPRPVILDP 981
G GK FS AQG +TVL L+ ++++LC+FW Y F+NP V +L+ QLKKPRPVILDP
Sbjct: 240 GCGKDAFSLAQGLRTVLGLIQEYRQLCVFWTLNYGFENPTVRSFLSSQLKKPRPVILDP 298
>ref|NP_001041599.1| 2'-5'-oligoadenylate synthase 2 [Canis lupus familiaris].
Length = 685
Score = 286 bits (733), Expect = 2e-77
Identities = 155/299 (51%), Positives = 197/299 (65%), Gaps = 3/299 (1%)
Frame = +1
Query: 94 TPVRDLDKFIEDHLLPNTCFRTQVKEAIDIVCGFLKERCFQGTADPVRXXXXXXXXXXXX 273
TP LDKFI+D L PN F Q+ A+D +C FL++ CFQ +A V+
Sbjct: 342 TPGHLLDKFIKDFLQPNKNFLGQIAVAVDFICKFLQKNCFQHSATKVQKTVKGGSTGKG- 400
Query: 274 XTTLRGRSDADLVVFLTKLTSFEDQLQLREEFIQEIRRQLEACQKEQKFKVTFEVQTPRQ 453
T L+ SDADLVVF L S+ Q R I+EI +QL ACQ+E++F V FE+ +
Sbjct: 401 -TALKTGSDADLVVFPDSLKSYTSQKNERCRIIKEIHKQLVACQQEKEFAVKFEIS--KW 457
Query: 454 ENPRALSFVLSSPQLQQEVEFDVLPAFDALGQWTPGYKPNPEIYVQLIKECKSLGKEG-E 630
+ PR LSF L S L + V FDVLPAF+ LGQ G P+P+IY +LI KS EG E
Sbjct: 458 KAPRVLSFSLKSKVLNESVNFDVLPAFNVLGQVNSGSPPSPKIYTELINLYKSSNAEGGE 517
Query: 631 FSTCFTELQRDFLRNRPTKLKSLIRLVKHWYQTCKKPHGNK--LPPQYALELLTVYAWEQ 804
FSTCFTELQ F+ +RPTK+K LIRLVKHWY+ C++ K LPP+YALELLT+YAWEQ
Sbjct: 518 FSTCFTELQCSFVASRPTKVKDLIRLVKHWYKQCERKLKKKGSLPPKYALELLTIYAWEQ 577
Query: 805 GSGKTDFSTAQGFQTVLELVLKHKKLCIFWEAYYNFKNPVVGRYLTEQLKKPRPVILDP 981
GSG +F TA+GF+TVLELV K+++LC+FW YNF + V +L Q++K RPVILDP
Sbjct: 578 GSGAENFDTAEGFRTVLELVTKYQQLCVFWTVNYNFDDETVRNFLLTQIQKTRPVILDP 636
Score = 197 bits (500), Expect = 2e-50
Identities = 121/294 (41%), Positives = 166/294 (56%), Gaps = 3/294 (1%)
Frame = +1
Query: 109 LDKFIEDHLLPNTCFRTQVKEAIDIVCGFLKERCFQGTADPVRXXXXXXXXXXXXXTTLR 288
LD+ I++ L P + Q+ +A+D +C L+E T T LR
Sbjct: 16 LDELIQNSLRPYGECQKQIDDAVDTICAALQE-----TEQIPTVLSVVQGGSYGRKTVLR 70
Query: 289 GRSDADLVVFLTKLTSFEDQLQLREEFIQEIRRQLEACQKEQKFKVTFEVQTPRQENPRA 468
G SD +V+F++ L F+DQ + +++ + +I + L+ACQ K EVQ R
Sbjct: 71 GNSDGMIVIFVSDLEQFQDQKRSQDKILNKIWQLLKACQLAMKLPAKMEVQRFRD----G 126
Query: 469 LSFVLSSPQLQQEVEFDVLPAFDALGQWTPGYKPNPEIYVQLIKECKSLGKE--GEFSTC 642
L F LS+ Q + F VLPA++ALG KP+ +IY +L K + K GEFS C
Sbjct: 127 LIFQLSTKW--QSITFKVLPAYNALGL---SEKPSSQIYREL-KRALDMTKAHPGEFSIC 180
Query: 643 FTELQRDFLRNRPTKLKSLIRLVKHWYQTCK-KPHGNKLPPQYALELLTVYAWEQGSGKT 819
FTELQ+ F P KLK LI LVK+WYQ C+ K G+ L YALELLTVYAWEQG G
Sbjct: 181 FTELQQKFFHKYPRKLKDLILLVKYWYQQCQEKLKGSPLLTMYALELLTVYAWEQGCGAE 240
Query: 820 DFSTAQGFQTVLELVLKHKKLCIFWEAYYNFKNPVVGRYLTEQLKKPRPVILDP 981
+F A+G +TVL L+ + ++LC++W YNF+N V L QL+ RPVILDP
Sbjct: 241 NFDIAEGIRTVLGLIRQQEQLCVYWIVNYNFENETVRNILLSQLRSSRPVILDP 294
>ref|NP_001041558.1| 59 kDa 2'-5'-oligoadenylate synthase-like protein [Canis lupus
familiaris].
Length = 519
Score = 226 bits (575), Expect = 3e-59
Identities = 125/303 (41%), Positives = 181/303 (59%), Gaps = 6/303 (1%)
Frame = +1
Query: 91 DTPVRDLDKFIEDHLLPNTCFRTQVKEAIDIVCGFLKERCFQGTA---DPVRXXXXXXXX 261
+TP L F+E L P ++ +VK+A + F +++CF+ VR
Sbjct: 9 ETPAERLLAFVERSLQPEGDWKEEVKDAWQRIERFFRDQCFRDELVLDQEVRVLKVVKGG 68
Query: 262 XXXXXTTLRGRSDADLVVFLTKLTSFEDQLQLREEFIQEIRRQLEACQKEQKFKVTFEVQ 441
TTL SD DLV+FL+ +SF+DQ R I I+++L K + +T Q
Sbjct: 69 SSGKGTTLNYSSDVDLVLFLSCFSSFQDQAAHRRSIISFIKKRLIQHSKNLAYSITIVPQ 128
Query: 442 TPRQENPRALSFVLSSPQLQQEVEFDVLPAFDALGQWTPGYKPNPEIYVQLIKECKSLGK 621
PR+LSF + + + + + DVLPA+DALG ++ +KP+PEIY LI S G
Sbjct: 129 KETTRVPRSLSFQVQARKTSEVIGVDVLPAYDALGHFSSDFKPSPEIYEDLI---TSGGP 185
Query: 622 EGEFSTCFTELQRDFLRNRPTKLKSLIRLVKHWYQTCKKP--HGNKLPPQYALELLTVYA 795
GEFS FTELQR F+++ P KLK+L+R+VKHWY C KP LPP+YA ELLT+YA
Sbjct: 186 PGEFSPSFTELQRHFVKSCPVKLKNLLRMVKHWYLQCLKPKYRNAALPPKYAFELLTIYA 245
Query: 796 WEQGSGKTD-FSTAQGFQTVLELVLKHKKLCIFWEAYYNFKNPVVGRYLTEQLKKPRPVI 972
WE G+ K+D F+ +GF+ V+EL+L ++ +C +W YY+F+N V ++ +QLK+ RPVI
Sbjct: 246 WEIGTDKSDNFNLDEGFRAVMELLLDYEDICRYWTKYYDFQNETVRIHIKQQLKECRPVI 305
Query: 973 LDP 981
LDP
Sbjct: 306 LDP 308
Database: RefSeq44_CP.fasta
Posted date: Nov 15, 2010 4:36 PM
Number of letters in database: 18,921,627
Number of sequences in database: 33,359
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33359
Number of Hits to DB: 37,538,221
Number of extensions: 981424
Number of successful extensions: 3618
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 3586
Number of HSP's successfully gapped: 7
Length of query: 327
Length of database: 18,921,627
Length adjustment: 103
Effective length of query: 224
Effective length of database: 15,485,650
Effective search space: 3468785600
Effective search space used: 3468785600
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel44
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20070806C-007549
(983 letters)
Database: RefSeq44_HP.fasta
33,950 sequences; 18,324,212 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001027581.1| 2'-5'-oligoadenylate synthase 1 isoform 3 [H... 434 e-122
Alignment gi|NP_058132.2| 2'-5'-oligoadenylate synthase 1 isoform 1 [Homo... 434 e-122
Alignment gi|NP_002525.2| 2'-5'-oligoadenylate synthase 1 isoform 2 [Homo... 434 e-122
Alignment gi|NP_006178.2| 2'-5'-oligoadenylate synthase 3 [Homo sapiens]. 318 6e-87
Alignment gi|NP_058197.2| 2'-5'-oligoadenylate synthase 2 isoform 1 [Homo... 288 7e-78
Alignment gi|NP_002526.2| 2'-5'-oligoadenylate synthase 2 isoform 2 [Homo... 288 7e-78
Alignment gi|NP_003724.1| 59 kDa 2'-5'-oligoadenylate synthase-like prote... 198 5e-51
Alignment gi|NP_937856.1| 59 kDa 2'-5'-oligoadenylate synthase-like prote... 125 6e-29
Alignment gi|NP_001027903.1| 2'-5'-oligoadenylate synthase 2 isoform 3 [H... 59 7e-09
>ref|NP_001027581.1| 2'-5'-oligoadenylate synthase 1 isoform 3 [Homo sapiens].
Length = 414
Score = 434 bits (1117), Expect = e-122
Identities = 214/297 (72%), Positives = 245/297 (82%)
Frame = +1
Query: 91 DTPVRDLDKFIEDHLLPNTCFRTQVKEAIDIVCGFLKERCFQGTADPVRXXXXXXXXXXX 270
+TP + LDKFIED+LLP+TCFR Q+ AIDI+CGFLKERCF+G++ PV
Sbjct: 6 NTPAKSLDKFIEDYLLPDTCFRMQINHAIDIICGFLKERCFRGSSYPVCVSKVVKGGSSG 65
Query: 271 XXTTLRGRSDADLVVFLTKLTSFEDQLQLREEFIQEIRRQLEACQKEQKFKVTFEVQTPR 450
TTLRGRSDADLVVFL+ LT+F+DQL R EFIQEIRRQLEACQ+E+ F V FEVQ PR
Sbjct: 66 KGTTLRGRSDADLVVFLSPLTTFQDQLNRRGEFIQEIRRQLEACQRERAFSVKFEVQAPR 125
Query: 451 QENPRALSFVLSSPQLQQEVEFDVLPAFDALGQWTPGYKPNPEIYVQLIKECKSLGKEGE 630
NPRALSFVLSS QL + VEFDVLPAFDALGQ T GYKPNP+IYV+LI+EC L KEGE
Sbjct: 126 WGNPRALSFVLSSLQLGEGVEFDVLPAFDALGQLTGGYKPNPQIYVKLIEECTDLQKEGE 185
Query: 631 FSTCFTELQRDFLRNRPTKLKSLIRLVKHWYQTCKKPHGNKLPPQYALELLTVYAWEQGS 810
FSTCFTELQRDFL+ RPTKLKSLIRLVKHWYQ CKK G KLPPQYALELLTVYAWE+GS
Sbjct: 186 FSTCFTELQRDFLKQRPTKLKSLIRLVKHWYQNCKKKLG-KLPPQYALELLTVYAWERGS 244
Query: 811 GKTDFSTAQGFQTVLELVLKHKKLCIFWEAYYNFKNPVVGRYLTEQLKKPRPVILDP 981
KT F+TAQGF+TVLELV+ +++LCI+W YY+FKNP++ +YL QL KPRPVILDP
Sbjct: 245 MKTHFNTAQGFRTVLELVINYQQLCIYWTKYYDFKNPIIEKYLRRQLTKPRPVILDP 301
>ref|NP_058132.2| 2'-5'-oligoadenylate synthase 1 isoform 1 [Homo sapiens].
Length = 400
Score = 434 bits (1117), Expect = e-122
Identities = 214/297 (72%), Positives = 245/297 (82%)
Frame = +1
Query: 91 DTPVRDLDKFIEDHLLPNTCFRTQVKEAIDIVCGFLKERCFQGTADPVRXXXXXXXXXXX 270
+TP + LDKFIED+LLP+TCFR Q+ AIDI+CGFLKERCF+G++ PV
Sbjct: 6 NTPAKSLDKFIEDYLLPDTCFRMQINHAIDIICGFLKERCFRGSSYPVCVSKVVKGGSSG 65
Query: 271 XXTTLRGRSDADLVVFLTKLTSFEDQLQLREEFIQEIRRQLEACQKEQKFKVTFEVQTPR 450
TTLRGRSDADLVVFL+ LT+F+DQL R EFIQEIRRQLEACQ+E+ F V FEVQ PR
Sbjct: 66 KGTTLRGRSDADLVVFLSPLTTFQDQLNRRGEFIQEIRRQLEACQRERAFSVKFEVQAPR 125
Query: 451 QENPRALSFVLSSPQLQQEVEFDVLPAFDALGQWTPGYKPNPEIYVQLIKECKSLGKEGE 630
NPRALSFVLSS QL + VEFDVLPAFDALGQ T GYKPNP+IYV+LI+EC L KEGE
Sbjct: 126 WGNPRALSFVLSSLQLGEGVEFDVLPAFDALGQLTGGYKPNPQIYVKLIEECTDLQKEGE 185
Query: 631 FSTCFTELQRDFLRNRPTKLKSLIRLVKHWYQTCKKPHGNKLPPQYALELLTVYAWEQGS 810
FSTCFTELQRDFL+ RPTKLKSLIRLVKHWYQ CKK G KLPPQYALELLTVYAWE+GS
Sbjct: 186 FSTCFTELQRDFLKQRPTKLKSLIRLVKHWYQNCKKKLG-KLPPQYALELLTVYAWERGS 244
Query: 811 GKTDFSTAQGFQTVLELVLKHKKLCIFWEAYYNFKNPVVGRYLTEQLKKPRPVILDP 981
KT F+TAQGF+TVLELV+ +++LCI+W YY+FKNP++ +YL QL KPRPVILDP
Sbjct: 245 MKTHFNTAQGFRTVLELVINYQQLCIYWTKYYDFKNPIIEKYLRRQLTKPRPVILDP 301
>ref|NP_002525.2| 2'-5'-oligoadenylate synthase 1 isoform 2 [Homo sapiens].
Length = 364
Score = 434 bits (1117), Expect = e-122
Identities = 214/297 (72%), Positives = 245/297 (82%)
Frame = +1
Query: 91 DTPVRDLDKFIEDHLLPNTCFRTQVKEAIDIVCGFLKERCFQGTADPVRXXXXXXXXXXX 270
+TP + LDKFIED+LLP+TCFR Q+ AIDI+CGFLKERCF+G++ PV
Sbjct: 6 NTPAKSLDKFIEDYLLPDTCFRMQINHAIDIICGFLKERCFRGSSYPVCVSKVVKGGSSG 65
Query: 271 XXTTLRGRSDADLVVFLTKLTSFEDQLQLREEFIQEIRRQLEACQKEQKFKVTFEVQTPR 450
TTLRGRSDADLVVFL+ LT+F+DQL R EFIQEIRRQLEACQ+E+ F V FEVQ PR
Sbjct: 66 KGTTLRGRSDADLVVFLSPLTTFQDQLNRRGEFIQEIRRQLEACQRERAFSVKFEVQAPR 125
Query: 451 QENPRALSFVLSSPQLQQEVEFDVLPAFDALGQWTPGYKPNPEIYVQLIKECKSLGKEGE 630
NPRALSFVLSS QL + VEFDVLPAFDALGQ T GYKPNP+IYV+LI+EC L KEGE
Sbjct: 126 WGNPRALSFVLSSLQLGEGVEFDVLPAFDALGQLTGGYKPNPQIYVKLIEECTDLQKEGE 185
Query: 631 FSTCFTELQRDFLRNRPTKLKSLIRLVKHWYQTCKKPHGNKLPPQYALELLTVYAWEQGS 810
FSTCFTELQRDFL+ RPTKLKSLIRLVKHWYQ CKK G KLPPQYALELLTVYAWE+GS
Sbjct: 186 FSTCFTELQRDFLKQRPTKLKSLIRLVKHWYQNCKKKLG-KLPPQYALELLTVYAWERGS 244
Query: 811 GKTDFSTAQGFQTVLELVLKHKKLCIFWEAYYNFKNPVVGRYLTEQLKKPRPVILDP 981
KT F+TAQGF+TVLELV+ +++LCI+W YY+FKNP++ +YL QL KPRPVILDP
Sbjct: 245 MKTHFNTAQGFRTVLELVINYQQLCIYWTKYYDFKNPIIEKYLRRQLTKPRPVILDP 301
>ref|NP_006178.2| 2'-5'-oligoadenylate synthase 3 [Homo sapiens].
Length = 1087
Score = 318 bits (814), Expect = 6e-87
Identities = 167/299 (55%), Positives = 208/299 (69%), Gaps = 3/299 (1%)
Frame = +1
Query: 94 TPVRDLDKFIEDHLLPNTCFRTQVKEAIDIVCGFLKERCFQGTADPVRXXXXXXXXXXXX 273
TP DLDKFI + L PN F QV +A+D +C FLKE CF+ + P++
Sbjct: 750 TPAGDLDKFISEFLQPNRQFLAQVNKAVDTICSFLKENCFRNS--PIKVIKVVKGGSSAK 807
Query: 274 XTTLRGRSDADLVVFLTKLTSFEDQLQLREEFIQEIRRQLEACQKEQKFKVTFEVQTPRQ 453
T LRGRSDADLVVFL+ + F +Q R E I EIR QLEACQ+E++F+V FEV +
Sbjct: 808 GTALRGRSDADLVVFLSCFSQFTEQGNKRAEIISEIRAQLEACQQERQFEVKFEVS--KW 865
Query: 454 ENPRALSFVLSSP-QLQQEVEFDVLPAFDALGQWTPGYKPNPEIYVQLIKECKSLGKEGE 630
ENPR LSF L+S L Q V+FDVLPAFDALGQ G +P+ ++YV LI S GE
Sbjct: 866 ENPRVLSFSLTSQTMLDQSVDFDVLPAFDALGQLVSGSRPSSQVYVDLIH---SYSNAGE 922
Query: 631 FSTCFTELQRDFLRNRPTKLKSLIRLVKHWYQTCKKPHGNK--LPPQYALELLTVYAWEQ 804
+STCFTELQRDF+ +RPTKLKSLIRLVKHWYQ C K + LPPQ+ LELLTVYAWEQ
Sbjct: 923 YSTCFTELQRDFIISRPTKLKSLIRLVKHWYQQCTKISKGRGSLPPQHGLELLTVYAWEQ 982
Query: 805 GSGKTDFSTAQGFQTVLELVLKHKKLCIFWEAYYNFKNPVVGRYLTEQLKKPRPVILDP 981
G + F+ A+GF+TVLELV ++++LCI+W YN K+ VG +L +QL+KPRP+ILDP
Sbjct: 983 GGKDSQFNMAEGFRTVLELVTQYRQLCIYWTINYNAKDKTVGDFLKQQLQKPRPIILDP 1041
Score = 238 bits (606), Expect = 8e-63
Identities = 129/301 (42%), Positives = 183/301 (60%), Gaps = 6/301 (1%)
Frame = +1
Query: 97 PVRDLDKFIEDHLLPNTCFRTQVKEAIDIVCGFLKERCFQGTADPVRXXXXXXXXXXXXX 276
P ++LD+FI+DHL P+ F+ QVK+AIDI+ L E C +
Sbjct: 412 PTKELDRFIQDHLKPSPQFQEQVKKAIDIILRCLHENCVH------KASRVSKGGSFGRG 465
Query: 277 TTLRGRSDADLVVFLTKLTSFEDQLQLREEFIQEIRRQLEACQKEQKFKVTFEVQTPRQE 456
T LR D +L++FL T ++DQ R E + E+R QLE+ ++Q + +Q P Q
Sbjct: 466 TDLRDGCDVELIIFLNCFTDYKDQGPRRAEILDEMRAQLESWWQDQV--PSLSLQFPEQN 523
Query: 457 NPRALSFVLSSPQLQQEVEFDVLPAFDALGQWTPGYKPNPEIYVQLIKECKSLGKEGEFS 636
P AL F L S L+ + +LPAFDA+GQ + G KPNP++Y +L+ S +EGE
Sbjct: 524 VPEALQFQLVSTALKSWTDVSLLPAFDAVGQLSSGTKPNPQVYSRLLT---SGCQEGEHK 580
Query: 637 TCFTELQRDFLRNRPTKLKSLIRLVKHWYQTC------KKPHGNKLPPQYALELLTVYAW 798
CF EL+R+F+ RP KLK+LI LVKHWY+ K P LPP YALELLT++AW
Sbjct: 581 ACFAELRRNFMNIRPVKLKNLILLVKHWYRQVAAQNKGKGPAPASLPPAYALELLTIFAW 640
Query: 799 EQGSGKTDFSTAQGFQTVLELVLKHKKLCIFWEAYYNFKNPVVGRYLTEQLKKPRPVILD 978
EQG + F+ AQGF+TVL LV +H++LC++W Y+ ++P + +L QL+KPRP++LD
Sbjct: 641 EQGCRQDCFNMAQGFRTVLGLVQQHQQLCVYWTVNYSTEDPAMRMHLLGQLRKPRPLVLD 700
Query: 979 P 981
P
Sbjct: 701 P 701
Score = 216 bits (551), Expect = 2e-56
Identities = 125/301 (41%), Positives = 175/301 (58%), Gaps = 5/301 (1%)
Frame = +1
Query: 94 TPVRDLDKFIEDHLLPNTCFRTQVKEAIDIVCGFLKERCFQGTADPVRXXXXXXXXXXXX 273
TP LD+F+ L P F + + A+ + L+ER + A R
Sbjct: 6 TPAAALDRFVARRLQPRKEFVEKARRALGALAAALRERGGRLGAAAPRVLKTVKGGSSGR 65
Query: 274 XTTLRGRSDADLVVFLTKLTSFEDQLQLREEFIQEIRRQLEACQKEQK--FKVTFEVQTP 447
T L+G D++LV+FL S+ DQ R E + E+R LE+ + ++TF P
Sbjct: 66 GTALKGGCDSELVIFLDCFKSYVDQRARRAEILSEMRASLESWWQNPVPGLRLTF----P 121
Query: 448 RQENPRALSFVLSSPQLQQEVEFDVLPAFDALGQWTPGYKPNPEIYVQLIKE-CKSLGKE 624
Q P AL F L+S L+ ++ ++PAF+ LGQ G KP P++Y L+ C+
Sbjct: 122 EQSVPGALQFRLTSVDLEDWMDVSLVPAFNVLGQAGSGVKPKPQVYSTLLNSGCQG---- 177
Query: 625 GEFSTCFTELQRDFLRNRPTKLKSLIRLVKHWY-QTCKKPHGNK-LPPQYALELLTVYAW 798
GE + CFTEL+R+F+ RP KLK+LI LVKHWY Q C + + LPP YALELLT++AW
Sbjct: 178 GEHAACFTELRRNFVNIRPAKLKNLILLVKHWYHQVCLQGLWKETLPPVYALELLTIFAW 237
Query: 799 EQGSGKTDFSTAQGFQTVLELVLKHKKLCIFWEAYYNFKNPVVGRYLTEQLKKPRPVILD 978
EQG K FS A+G +TVL L+ +H+ LC+FW Y F++P VG++L QLK+PRPVILD
Sbjct: 238 EQGCKKDAFSLAEGLRTVLGLIQQHQHLCVFWTVNYGFEDPAVGQFLQRQLKRPRPVILD 297
Query: 979 P 981
P
Sbjct: 298 P 298
>ref|NP_058197.2| 2'-5'-oligoadenylate synthase 2 isoform 1 [Homo sapiens].
Length = 719
Score = 288 bits (736), Expect = 7e-78
Identities = 157/302 (51%), Positives = 205/302 (67%), Gaps = 6/302 (1%)
Frame = +1
Query: 94 TPVRDLDKFIEDHLLPNTCFRTQVKEAIDIVCGFLKERCFQGTADPVRXXXXXXXXXXXX 273
TP LDKFI++ L PN CF Q+ A++I+ FLKE CF+ + ++
Sbjct: 343 TPGHLLDKFIKEFLQPNKCFLEQIDSAVNIIRTFLKENCFRQSTAKIQIVRGGSTAKG-- 400
Query: 274 XTTLRGRSDADLVVFLTKLTSFEDQLQLREEFIQEIRRQLEAC--QKEQKFKVTFEVQTP 447
T L+ SDADLVVF L S+ Q R + ++EI QL+A +KE++ +V+FE P
Sbjct: 401 -TALKTGSDADLVVFHNSLKSYTSQKNERHKIVKEIHEQLKAFWREKEEELEVSFE--PP 457
Query: 448 RQENPRALSFVLSSPQLQQEVEFDVLPAFDALGQWTPGYKPNPEIYVQLIKECKSLGKEG 627
+ + PR LSF L S L + V FDVLPAF+ALGQ + G P+PE+Y LI KS G
Sbjct: 458 KWKAPRVLSFSLKSKVLNESVSFDVLPAFNALGQLSSGSTPSPEVYAGLIDLYKSSDLPG 517
Query: 628 -EFSTCFTELQRDFLRNRPTKLKSLIRLVKHWYQTCK---KPHGNKLPPQYALELLTVYA 795
EFSTCFT LQR+F+R+RPTKLK LIRLVKHWY+ C+ KP G+ LPP+YALELLT+YA
Sbjct: 518 GEFSTCFTVLQRNFIRSRPTKLKDLIRLVKHWYKECERKLKPKGS-LPPKYALELLTIYA 576
Query: 796 WEQGSGKTDFSTAQGFQTVLELVLKHKKLCIFWEAYYNFKNPVVGRYLTEQLKKPRPVIL 975
WEQGSG DF TA+GF+TVLELV ++++LCIFW+ YNF++ V ++L QL+K RPVIL
Sbjct: 577 WEQGSGVPDFDTAEGFRTVLELVTQYQQLCIFWKVNYNFEDETVRKFLLSQLQKTRPVIL 636
Query: 976 DP 981
DP
Sbjct: 637 DP 638
Score = 185 bits (469), Expect = 6e-47
Identities = 116/302 (38%), Positives = 162/302 (53%), Gaps = 7/302 (2%)
Frame = +1
Query: 97 PVRDLDKFIEDHLLPNTCFRTQVKEAIDIVCGFLKER----CFQGTADPVRXXXXXXXXX 264
P + L FI+++L P +T + E ++ +C L+E QG A
Sbjct: 12 PAQKLGWFIQEYLKPYEECQTLIDEMVNTICDVLQEPEQFPLVQGVA---------IGGS 62
Query: 265 XXXXTTLRGRSDADLVVFLTKLTSFEDQLQLREEFIQEIRRQLEACQKEQKFKVTFEVQT 444
T LRG SD LV+F + L F+DQ + + + + + +L+ C + K FE+Q
Sbjct: 63 YGRKTVLRGNSDGTLVLFFSDLKQFQDQKRSQRDILDKTGDKLKFCLFTKWLKNNFEIQK 122
Query: 445 PRQENPRALSFVLSSPQLQQEVEFDVLPAFDALGQWTPGYKPNPEIYVQLIKEC-KSLGK 621
F + Q + F+VL AF+AL P+P IY +L + K+
Sbjct: 123 SLD------GFTIQVFTKNQRISFEVLAAFNALSL---NDNPSPWIYRELKRSLDKTNAS 173
Query: 622 EGEFSTCFTELQRDFLRNRPTKLKSLIRLVKHWYQTCKKPHGN--KLPPQYALELLTVYA 795
GEF+ CFTELQ+ F NRP KLK LI L+KHW+Q C+K + L P YALELLTVYA
Sbjct: 174 PGEFAVCFTELQQKFFDNRPGKLKDLILLIKHWHQQCQKKIKDLPSLSP-YALELLTVYA 232
Query: 796 WEQGSGKTDFSTAQGFQTVLELVLKHKKLCIFWEAYYNFKNPVVGRYLTEQLKKPRPVIL 975
WEQG K +F A+G +TVLEL+ +KLCI+W YNF++ + L QL+ RPVIL
Sbjct: 233 WEQGCRKDNFDIAEGVRTVLELIKCQEKLCIYWMVNYNFEDETIRNILLHQLQSARPVIL 292
Query: 976 DP 981
DP
Sbjct: 293 DP 294
>ref|NP_002526.2| 2'-5'-oligoadenylate synthase 2 isoform 2 [Homo sapiens].
Length = 687
Score = 288 bits (736), Expect = 7e-78
Identities = 157/302 (51%), Positives = 205/302 (67%), Gaps = 6/302 (1%)
Frame = +1
Query: 94 TPVRDLDKFIEDHLLPNTCFRTQVKEAIDIVCGFLKERCFQGTADPVRXXXXXXXXXXXX 273
TP LDKFI++ L PN CF Q+ A++I+ FLKE CF+ + ++
Sbjct: 343 TPGHLLDKFIKEFLQPNKCFLEQIDSAVNIIRTFLKENCFRQSTAKIQIVRGGSTAKG-- 400
Query: 274 XTTLRGRSDADLVVFLTKLTSFEDQLQLREEFIQEIRRQLEAC--QKEQKFKVTFEVQTP 447
T L+ SDADLVVF L S+ Q R + ++EI QL+A +KE++ +V+FE P
Sbjct: 401 -TALKTGSDADLVVFHNSLKSYTSQKNERHKIVKEIHEQLKAFWREKEEELEVSFE--PP 457
Query: 448 RQENPRALSFVLSSPQLQQEVEFDVLPAFDALGQWTPGYKPNPEIYVQLIKECKSLGKEG 627
+ + PR LSF L S L + V FDVLPAF+ALGQ + G P+PE+Y LI KS G
Sbjct: 458 KWKAPRVLSFSLKSKVLNESVSFDVLPAFNALGQLSSGSTPSPEVYAGLIDLYKSSDLPG 517
Query: 628 -EFSTCFTELQRDFLRNRPTKLKSLIRLVKHWYQTCK---KPHGNKLPPQYALELLTVYA 795
EFSTCFT LQR+F+R+RPTKLK LIRLVKHWY+ C+ KP G+ LPP+YALELLT+YA
Sbjct: 518 GEFSTCFTVLQRNFIRSRPTKLKDLIRLVKHWYKECERKLKPKGS-LPPKYALELLTIYA 576
Query: 796 WEQGSGKTDFSTAQGFQTVLELVLKHKKLCIFWEAYYNFKNPVVGRYLTEQLKKPRPVIL 975
WEQGSG DF TA+GF+TVLELV ++++LCIFW+ YNF++ V ++L QL+K RPVIL
Sbjct: 577 WEQGSGVPDFDTAEGFRTVLELVTQYQQLCIFWKVNYNFEDETVRKFLLSQLQKTRPVIL 636
Query: 976 DP 981
DP
Sbjct: 637 DP 638
Score = 185 bits (469), Expect = 6e-47
Identities = 116/302 (38%), Positives = 162/302 (53%), Gaps = 7/302 (2%)
Frame = +1
Query: 97 PVRDLDKFIEDHLLPNTCFRTQVKEAIDIVCGFLKER----CFQGTADPVRXXXXXXXXX 264
P + L FI+++L P +T + E ++ +C L+E QG A
Sbjct: 12 PAQKLGWFIQEYLKPYEECQTLIDEMVNTICDVLQEPEQFPLVQGVA---------IGGS 62
Query: 265 XXXXTTLRGRSDADLVVFLTKLTSFEDQLQLREEFIQEIRRQLEACQKEQKFKVTFEVQT 444
T LRG SD LV+F + L F+DQ + + + + + +L+ C + K FE+Q
Sbjct: 63 YGRKTVLRGNSDGTLVLFFSDLKQFQDQKRSQRDILDKTGDKLKFCLFTKWLKNNFEIQK 122
Query: 445 PRQENPRALSFVLSSPQLQQEVEFDVLPAFDALGQWTPGYKPNPEIYVQLIKEC-KSLGK 621
F + Q + F+VL AF+AL P+P IY +L + K+
Sbjct: 123 SLD------GFTIQVFTKNQRISFEVLAAFNALSL---NDNPSPWIYRELKRSLDKTNAS 173
Query: 622 EGEFSTCFTELQRDFLRNRPTKLKSLIRLVKHWYQTCKKPHGN--KLPPQYALELLTVYA 795
GEF+ CFTELQ+ F NRP KLK LI L+KHW+Q C+K + L P YALELLTVYA
Sbjct: 174 PGEFAVCFTELQQKFFDNRPGKLKDLILLIKHWHQQCQKKIKDLPSLSP-YALELLTVYA 232
Query: 796 WEQGSGKTDFSTAQGFQTVLELVLKHKKLCIFWEAYYNFKNPVVGRYLTEQLKKPRPVIL 975
WEQG K +F A+G +TVLEL+ +KLCI+W YNF++ + L QL+ RPVIL
Sbjct: 233 WEQGCRKDNFDIAEGVRTVLELIKCQEKLCIYWMVNYNFEDETIRNILLHQLQSARPVIL 292
Query: 976 DP 981
DP
Sbjct: 293 DP 294
>ref|NP_003724.1| 59 kDa 2'-5'-oligoadenylate synthase-like protein isoform a [Homo
sapiens].
Length = 514
Score = 198 bits (504), Expect = 5e-51
Identities = 114/303 (37%), Positives = 171/303 (56%), Gaps = 7/303 (2%)
Frame = +1
Query: 94 TPVRDLDKFIEDHLLPNTCFRTQVKEAIDIVCGFLKERCFQGTA---DPVRXXXXXXXXX 264
TP LD F+ L P+ ++ +V +A+ V FL++ FQG VR
Sbjct: 10 TPASRLDSFVAQWLQPHREWKEEVLDAVRTVEEFLRQEHFQGKRGLDQDVRVLKVVKVGS 69
Query: 265 XXXXTTLRGRSDADLVVFLTKLTSFEDQLQLREEFIQEIRRQLEACQKEQKFKVTFEVQT 444
T LR + +LV FL+ SF++ + ++ ++ I + + Q + + E
Sbjct: 70 FGNGTVLRSTREVELVAFLSCFHSFQEAAKHHKDVLRLIWKTM--WQSQDLLDLGLEDLR 127
Query: 445 PRQENPRALSFVLSSPQLQQEVEFDVLPAFDALGQWTPGYKPNPEIYVQLIKECKSLGKE 624
Q P AL F + + + + ++PA+ ALG P +P PE+YV LIK C G
Sbjct: 128 MEQRVPDALVFTIQTRGTAEPITVTIVPAYRALGPSLPNSQPPPEVYVSLIKAC---GGP 184
Query: 625 GEFSTCFTELQRDFLRNRPTKLKSLIRLVKHWYQ---TCKKPHGNKLPPQYALELLTVYA 795
G F F+ELQR+F+++RPTKLKSL+RLVKHWYQ + P N LPP YALELLT+YA
Sbjct: 185 GNFCPSFSELQRNFVKHRPTKLKSLLRLVKHWYQQYVKARSPRAN-LPPLYALELLTIYA 243
Query: 796 WEQGSGKTD-FSTAQGFQTVLELVLKHKKLCIFWEAYYNFKNPVVGRYLTEQLKKPRPVI 972
WE G+ + + F +GF TV++L+L+++ +CI+W YY N ++ + +QLKK RP+I
Sbjct: 244 WEMGTEEDENFMLDEGFTTVMDLLLEYEVICIYWTKYYTLHNAIIEDCVRKQLKKERPII 303
Query: 973 LDP 981
LDP
Sbjct: 304 LDP 306
>ref|NP_937856.1| 59 kDa 2'-5'-oligoadenylate synthase-like protein isoform b [Homo
sapiens].
Length = 255
Score = 125 bits (314), Expect = 6e-29
Identities = 77/227 (33%), Positives = 116/227 (51%), Gaps = 3/227 (1%)
Frame = +1
Query: 94 TPVRDLDKFIEDHLLPNTCFRTQVKEAIDIVCGFLKERCFQGTA---DPVRXXXXXXXXX 264
TP LD F+ L P+ ++ +V +A+ V FL++ FQG VR
Sbjct: 10 TPASRLDSFVAQWLQPHREWKEEVLDAVRTVEEFLRQEHFQGKRGLDQDVRVLKVVKVGS 69
Query: 265 XXXXTTLRGRSDADLVVFLTKLTSFEDQLQLREEFIQEIRRQLEACQKEQKFKVTFEVQT 444
T LR + +LV FL+ SF++ + ++ ++ I + + Q + + E
Sbjct: 70 FGNGTVLRSTREVELVAFLSCFHSFQEAAKHHKDVLRLIWKTM--WQSQDLLDLGLEDLR 127
Query: 445 PRQENPRALSFVLSSPQLQQEVEFDVLPAFDALGQWTPGYKPNPEIYVQLIKECKSLGKE 624
Q P AL F + + + + ++PA+ ALG P +P PE+YV LIK C G
Sbjct: 128 MEQRVPDALVFTIQTRGTAEPITVTIVPAYRALGPSLPNSQPPPEVYVSLIKAC---GGP 184
Query: 625 GEFSTCFTELQRDFLRNRPTKLKSLIRLVKHWYQTCKKPHGNKLPPQ 765
G F F+ELQR+F+++RPTKLKSL+RLVKHWYQ P + PQ
Sbjct: 185 GNFCPSFSELQRNFVKHRPTKLKSLLRLVKHWYQQAHHPGSGRPHPQ 231
>ref|NP_001027903.1| 2'-5'-oligoadenylate synthase 2 isoform 3 [Homo sapiens].
Length = 172
Score = 58.9 bits (141), Expect = 7e-09
Identities = 45/163 (27%), Positives = 72/163 (44%), Gaps = 6/163 (3%)
Frame = +1
Query: 97 PVRDLDKFIEDHLLPNTCFRTQVKEAIDIVCGFLKER----CFQGTADPVRXXXXXXXXX 264
P + L FI+++L P +T + E ++ +C L+E QG A
Sbjct: 12 PAQKLGWFIQEYLKPYEECQTLIDEMVNTICDVLQEPEQFPLVQGVA---------IGGS 62
Query: 265 XXXXTTLRGRSDADLVVFLTKLTSFEDQLQLREEFIQEIRRQLEACQKEQKFKVTFEVQT 444
T LRG SD LV+F + L F+DQ + + + + + +L+ C + K FE+Q
Sbjct: 63 YGRKTVLRGNSDGTLVLFFSDLKQFQDQKRSQRDILDKTGDKLKFCLFTKWLKNNFEIQK 122
Query: 445 PRQENPRALSFVLSSPQLQQEVEFDVLPAFDALGQ--WTPGYK 567
F + Q + F+VL AF+AL + W G K
Sbjct: 123 SLD------GFTIQVFTKNQRISFEVLAAFNALSKHCWVSGEK 159
Database: RefSeq44_HP.fasta
Posted date: Nov 15, 2010 4:36 PM
Number of letters in database: 18,324,212
Number of sequences in database: 33,950
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33950
Number of Hits to DB: 36,946,749
Number of extensions: 967620
Number of successful extensions: 3623
Number of sequences better than 1.0e-05: 9
Number of HSP's gapped: 3565
Number of HSP's successfully gapped: 13
Length of query: 327
Length of database: 18,324,212
Length adjustment: 103
Effective length of query: 224
Effective length of database: 14,827,362
Effective search space: 3321329088
Effective search space used: 3321329088
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel44
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20070806C-007549
(983 letters)
Database: RefSeq44_MP.fasta
29,866 sequences; 15,452,059 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_035982.2| 2'-5' oligoadenylate synthetase 1G [Mus musculu... 377 e-105
Alignment gi|NP_660212.2| 2'-5'-oligoadenylate synthase 1A [Mus musculus]. 375 e-104
Alignment gi|NP_660135.2| 2'-5'oligoadenylate synthetase 1F [Mus musculus]. 326 2e-89
Alignment gi|NP_660261.1| 2'-5'-oligoadenylate synthase 3 [Mus musculus]. 305 5e-83
Alignment gi|NP_001077394.1| 2'-5'-oligoadenylate synthase 1B [Mus muscul... 300 9e-82
Alignment gi|NP_291019.1| 2'-5' oligoadenylate synthetase 1C [Mus musculu... 296 2e-80
Alignment gi|NP_660262.2| 2'-5' oligoadenylate synthetase 2 [Mus musculus]. 291 4e-79
Alignment gi|NP_660211.2| 2'-5' oligoadenylate synthetase 1E [Mus musculu... 290 2e-78
Alignment gi|NP_598654.1| 2'-5' oligoadenylate synthetase 1D [Mus musculu... 287 8e-78
Alignment gi|NP_660263.1| 2'-5' oligoadenylate synthetase 1H isoform 1 [M... 275 5e-74
>ref|NP_035982.2| 2'-5' oligoadenylate synthetase 1G [Mus musculus].
Length = 367
Score = 377 bits (969), Expect = e-105
Identities = 190/295 (64%), Positives = 223/295 (75%)
Frame = +1
Query: 97 PVRDLDKFIEDHLLPNTCFRTQVKEAIDIVCGFLKERCFQGTADPVRXXXXXXXXXXXXX 276
P LDKFIED+LLP+T F VK A+++VC FLKERCFQG A PVR
Sbjct: 9 PAWTLDKFIEDYLLPDTTFGADVKSAVNVVCDFLKERCFQGAAHPVRVSKVVKGGSSGKG 68
Query: 277 TTLRGRSDADLVVFLTKLTSFEDQLQLREEFIQEIRRQLEACQKEQKFKVTFEVQTPRQE 456
TTL+GRSDADLVVFL LTSFEDQL R EFI+EI++QL Q E++F+V FEVQ+
Sbjct: 69 TTLKGRSDADLVVFLNNLTSFEDQLNRRGEFIKEIKKQLYEVQHERRFRVKFEVQSSWWP 128
Query: 457 NPRALSFVLSSPQLQQEVEFDVLPAFDALGQWTPGYKPNPEIYVQLIKECKSLGKEGEFS 636
N R+LSF LS+P L QEVEFDVLPAFD LG + KPNP IY LI EC SLGK+GEFS
Sbjct: 129 NARSLSFKLSAPHLHQEVEFDVLPAFDVLGHGSINKKPNPLIYTILIWECTSLGKDGEFS 188
Query: 637 TCFTELQRDFLRNRPTKLKSLIRLVKHWYQTCKKPHGNKLPPQYALELLTVYAWEQGSGK 816
TCFTELQR+FL+ RPTKLKSLIRLVKHWYQ CK+ G LPPQYALELLTVYAWEQG+G
Sbjct: 189 TCFTELQRNFLKQRPTKLKSLIRLVKHWYQLCKEKLGKPLPPQYALELLTVYAWEQGNGC 248
Query: 817 TDFSTAQGFQTVLELVLKHKKLCIFWEAYYNFKNPVVGRYLTEQLKKPRPVILDP 981
+F+TAQGF+TVLELV+ ++ L I+W YY+F++ V +YL QL+K RPVILDP
Sbjct: 249 NEFNTAQGFRTVLELVINYQHLRIYWTKYYDFQHKEVSKYLHRQLRKARPVILDP 303
>ref|NP_660212.2| 2'-5'-oligoadenylate synthase 1A [Mus musculus].
Length = 367
Score = 375 bits (962), Expect = e-104
Identities = 187/295 (63%), Positives = 223/295 (75%)
Frame = +1
Query: 97 PVRDLDKFIEDHLLPNTCFRTQVKEAIDIVCGFLKERCFQGTADPVRXXXXXXXXXXXXX 276
P LDKFIED+LLP+T F VK A+++VC FLKERCFQG A PVR
Sbjct: 9 PAWTLDKFIEDYLLPDTTFGADVKSAVNVVCDFLKERCFQGAAHPVRVSKVVKGGSSGKG 68
Query: 277 TTLRGRSDADLVVFLTKLTSFEDQLQLREEFIQEIRRQLEACQKEQKFKVTFEVQTPRQE 456
TTL+G+SDADLVVFL LTSFEDQL R EFI+EI++QL Q E++F+V FEVQ+
Sbjct: 69 TTLKGKSDADLVVFLNNLTSFEDQLNRRGEFIKEIKKQLYEVQHERRFRVKFEVQSSWWP 128
Query: 457 NPRALSFVLSSPQLQQEVEFDVLPAFDALGQWTPGYKPNPEIYVQLIKECKSLGKEGEFS 636
N R+LSF LS+P L QEVEFDVLPAFD LG KP+P IY LI+EC SLGK+GEFS
Sbjct: 129 NARSLSFKLSAPHLHQEVEFDVLPAFDVLGHVNTSSKPDPRIYAILIEECTSLGKDGEFS 188
Query: 637 TCFTELQRDFLRNRPTKLKSLIRLVKHWYQTCKKPHGNKLPPQYALELLTVYAWEQGSGK 816
TCFTELQR+FL+ RPTKLKSLIRLVKHWYQ CK+ G LPPQYALELLTV+AWEQG+G
Sbjct: 189 TCFTELQRNFLKQRPTKLKSLIRLVKHWYQLCKEKLGKPLPPQYALELLTVFAWEQGNGC 248
Query: 817 TDFSTAQGFQTVLELVLKHKKLCIFWEAYYNFKNPVVGRYLTEQLKKPRPVILDP 981
+F+TAQGF+TVLELV+ ++ L I+W YY+F++ V +YL QL+K RPVILDP
Sbjct: 249 YEFNTAQGFRTVLELVINYQHLRIYWTKYYDFQHQEVSKYLHRQLRKARPVILDP 303
>ref|NP_660135.2| 2'-5'oligoadenylate synthetase 1F [Mus musculus].
Length = 364
Score = 326 bits (835), Expect = 2e-89
Identities = 169/301 (56%), Positives = 208/301 (69%), Gaps = 5/301 (1%)
Frame = +1
Query: 94 TPVRDLDKFIEDHLLPNTCFRTQVKEAIDIVCGFLKERCFQGTADPVRXXXXXXXXXXXX 273
TP +LDKFI DHLLP++ F + + +D + FLKERCFQG PVR
Sbjct: 8 TPACELDKFIRDHLLPDSSFHAEARADVDFIGAFLKERCFQGATHPVRVSRVVMGGSYDE 67
Query: 274 XTTLRGRSDADLVVFLTKLTSFEDQLQLREEFIQEIRRQLEACQKEQKFKVTFEVQTPRQ 453
T L+ +S+A +VVFL LTSFE+QL+ R EFI+EIR+ L Q E+ FKV FEVQ+ +
Sbjct: 68 HTALKSKSEAKMVVFLNNLTSFEEQLKRRGEFIEEIRKHLCQLQDEKPFKVKFEVQSSEE 127
Query: 454 ENPRALSFVLSSPQLQQEVEFDVLPAFDAL-----GQWTPGYKPNPEIYVQLIKECKSLG 618
N R+LSF LSSP+LQQEVEFDV PA+D L ++ Y N +IY QLI EC +L
Sbjct: 128 PNSRSLSFKLSSPELQQEVEFDVQPAYDVLYELRNNKYAELYLYN-KIYAQLIHECTTLK 186
Query: 619 KEGEFSTCFTELQRDFLRNRPTKLKSLIRLVKHWYQTCKKPHGNKLPPQYALELLTVYAW 798
KEGEFS CFT+L + FL +R KLK+LIRLVKHWYQ CK+ G LPPQYALELLTVYAW
Sbjct: 187 KEGEFSICFTDLHQSFLEDRAPKLKNLIRLVKHWYQLCKEKLGKPLPPQYALELLTVYAW 246
Query: 799 EQGSGKTDFSTAQGFQTVLELVLKHKKLCIFWEAYYNFKNPVVGRYLTEQLKKPRPVILD 978
E GS +F+TAQGF+TVLELV K+K L I+W YY+F+ V YL + L+K RPVILD
Sbjct: 247 ESGSRDCEFNTAQGFRTVLELVTKYKWLRIYWTVYYDFRKTKVSEYLHKMLQKVRPVILD 306
Query: 979 P 981
P
Sbjct: 307 P 307
>ref|NP_660261.1| 2'-5'-oligoadenylate synthase 3 [Mus musculus].
Length = 1138
Score = 305 bits (780), Expect = 5e-83
Identities = 159/299 (53%), Positives = 201/299 (67%), Gaps = 3/299 (1%)
Frame = +1
Query: 94 TPVRDLDKFIEDHLLPNTCFRTQVKEAIDIVCGFLKERCFQGTADPVRXXXXXXXXXXXX 273
T DLDKFI + L PN F TQVK A+D +C FLKE CF+ + ++
Sbjct: 801 TLAEDLDKFISEFLQPNRHFLTQVKRAVDTICSFLKENCFRNST--IKVLKVVKGGSSAK 858
Query: 274 XTTLRGRSDADLVVFLTKLTSFEDQLQLREEFIQEIRRQLEACQKEQKFKVTFEVQTPRQ 453
T L+GRSDADLVVFL+ F +Q R E I EI+ LEACQ+ F V FEV ++
Sbjct: 859 GTALQGRSDADLVVFLSCFRQFSEQGSHRAEIISEIQAHLEACQQMHSFDVKFEVS--KR 916
Query: 454 ENPRALSFVLSSPQL-QQEVEFDVLPAFDALGQWTPGYKPNPEIYVQLIKECKSLGKEGE 630
+NPR LSF L+S L Q V+FDVLPAFDALGQ G +P+P +Y LI C + G E
Sbjct: 917 KNPRVLSFTLTSQTLLDQSVDFDVLPAFDALGQLRSGSRPDPRVYTDLIHSCSNAG---E 973
Query: 631 FSTCFTELQRDFLRNRPTKLKSLIRLVKHWYQTCKKPHGNK--LPPQYALELLTVYAWEQ 804
FSTCFTELQRDF+ +RPTKLKSLIRLVK+WYQ C K K LPPQ+ LELLTVYAWEQ
Sbjct: 974 FSTCFTELQRDFITSRPTKLKSLIRLVKYWYQQCNKTIKGKGSLPPQHGLELLTVYAWEQ 1033
Query: 805 GSGKTDFSTAQGFQTVLELVLKHKKLCIFWEAYYNFKNPVVGRYLTEQLKKPRPVILDP 981
G F+ A+GF+TVLEL++++++LC++W Y+ ++ +G +L QL+KPRPVILDP
Sbjct: 1034 GGQNPQFNMAEGFRTVLELIVQYRQLCVYWTINYSAEDKTIGDFLKMQLRKPRPVILDP 1092
Score = 208 bits (530), Expect = 4e-54
Identities = 124/298 (41%), Positives = 166/298 (55%), Gaps = 2/298 (0%)
Frame = +1
Query: 94 TPVRDLDKFIEDHLLPNTCFRTQVKEAIDIVCGFLKERCFQGTADPVRXXXXXXXXXXXX 273
TP LDK + +L P F V+ A+ + L++ +G+ P R
Sbjct: 6 TPAGALDKLVAHNLHPAPEFTAAVRGALGSLNITLQQHRARGSQRP-RVIRIAKGGAYAR 64
Query: 274 XTTLRGRSDADLVVFLTKLTSFEDQLQLREEFIQEIRRQLEACQKEQKFKVTFEVQTPRQ 453
T LRG +D +LV+FL SF DQ E + +R LE+ +TFE +
Sbjct: 65 GTALRGGTDVELVIFLDCFQSFGDQKTCHSETLGAMRMLLESWGGHPGPGLTFEFSQSKA 124
Query: 454 ENPRALSFVLSSPQLQQEVEFDVLPAFDALGQWTPGYKPNPEIYVQLIKE-CKSLGKEGE 630
R L F L+S + ++ ++PAFD LGQ G KP P +Y L+ C++ GE
Sbjct: 125 S--RILQFRLASADGEHWIDVSLVPAFDVLGQPRSGVKPTPNVYSSLLSSHCQA----GE 178
Query: 631 FSTCFTELQRDFLRNRPTKLKSLIRLVKHWY-QTCKKPHGNKLPPQYALELLTVYAWEQG 807
+S CFTE +++F+ RP KLK+LI LVKHWY Q + LPP YALELLT++AWEQG
Sbjct: 179 YSACFTEPRKNFVNTRPAKLKNLILLVKHWYHQVQTRAVRATLPPSYALELLTIFAWEQG 238
Query: 808 SGKTDFSTAQGFQTVLELVLKHKKLCIFWEAYYNFKNPVVGRYLTEQLKKPRPVILDP 981
GK FS AQG +TVL L+ K LCIFW Y F++P VG +L QLK+PRPVILDP
Sbjct: 239 CGKDSFSLAQGLRTVLALIQHSKYLCIFWTENYGFEDPAVGEFLRRQLKRPRPVILDP 296
Score = 205 bits (522), Expect = 4e-53
Identities = 114/302 (37%), Positives = 172/302 (56%), Gaps = 7/302 (2%)
Frame = +1
Query: 97 PVRDLDKFIEDHLLPNTCFRTQVKEAIDIVCGFLKERCFQGTADPVRXXXXXXXXXXXXX 276
P +DLD FI+DHL P+ F+ QVK+AID + L+E+ +
Sbjct: 464 PSKDLDCFIQDHLRPSPQFQQQVKQAIDAILCCLREKSVY------KVLRVSKGGSFGRG 517
Query: 277 TTLRGRSDADLVVFLTKLTSFEDQLQLREEFIQEIRRQLEACQKEQKFKVTFEVQTPRQE 456
T LRG D +LV+F L F+ Q + E +++++ QL + ++ + ++
Sbjct: 518 TDLRGSCDVELVIFYKTLGDFKGQKPHQAEILRDMQAQLRHWCQNPVPGLSLQFI---EQ 574
Query: 457 NPRALSFVLSSPQLQQEVEFDVLPAFDALGQWTPGYKPNPEIYVQLIKE-CKSLGKEGEF 633
P AL L+S L V+ VLPAFDA+G G KP P++Y L+ C++ GE
Sbjct: 575 KPNALQLQLASTDLSNRVDLSVLPAFDAVGPLKSGTKPQPQVYSSLLSSGCQA----GEH 630
Query: 634 STCFTELQRDFLRNRPTKLKSLIRLVKHWYQTCKKPH------GNKLPPQYALELLTVYA 795
+ CF EL+R+F+ P KLKSL+ LVKHWY+ + G+ PP YALELLT++A
Sbjct: 631 AACFAELRRNFINTCPPKLKSLMLLVKHWYRQVVTRYKGGEAAGDAPPPAYALELLTIFA 690
Query: 796 WEQGSGKTDFSTAQGFQTVLELVLKHKKLCIFWEAYYNFKNPVVGRYLTEQLKKPRPVIL 975
WEQG G+ FS A+G +T+L L+ +H+ LCI+W Y+ ++P + +L QL+K RP++L
Sbjct: 691 WEQGCGEQKFSLAEGLRTILRLIQQHQSLCIYWTVNYSVQDPAIRAHLLCQLRKARPLVL 750
Query: 976 DP 981
DP
Sbjct: 751 DP 752
>ref|NP_001077394.1| 2'-5'-oligoadenylate synthase 1B [Mus musculus].
Length = 376
Score = 300 bits (769), Expect = 9e-82
Identities = 165/295 (55%), Positives = 199/295 (67%)
Frame = +1
Query: 97 PVRDLDKFIEDHLLPNTCFRTQVKEAIDIVCGFLKERCFQGTADPVRXXXXXXXXXXXXX 276
P LDKFIE+HL P+T F ++E ID +C LK+R F+G PVR
Sbjct: 9 PASKLDKFIENHL-PDTSFCADLREVIDALCALLKDRSFRG---PVRRMRASKGVKGKG- 63
Query: 277 TTLRGRSDADLVVFLTKLTSFEDQLQLREEFIQEIRRQLEACQKEQKFKVTFEVQTPRQE 456
TTL+GRSDADLVVFL LTSFEDQL + I+EI++QL Q E++ V FEV + R
Sbjct: 64 TTLKGRSDADLVVFLNNLTSFEDQLNQQGVLIKEIKKQLCEVQHERRCGVKFEVHSLRSP 123
Query: 457 NPRALSFVLSSPQLQQEVEFDVLPAFDALGQWTPGYKPNPEIYVQLIKECKSLGKEGEFS 636
N RALSF LS+P L +EV+FDVLPA+D L KPN + Y LI GKEG+ S
Sbjct: 124 NSRALSFKLSAPDLLKEVKFDVLPAYDLLDHLNILKKPNQQFYANLISGRTPPGKEGKLS 183
Query: 637 TCFTELQRDFLRNRPTKLKSLIRLVKHWYQTCKKPHGNKLPPQYALELLTVYAWEQGSGK 816
CF L++ FL RPTKLK LIRLV HWYQ CK+ G+ LPPQYALELLTVYAWE GS
Sbjct: 184 ICFMGLRKYFLNCRPTKLKRLIRLVTHWYQLCKEKLGDPLPPQYALELLTVYAWEYGSRV 243
Query: 817 TDFSTAQGFQTVLELVLKHKKLCIFWEAYYNFKNPVVGRYLTEQLKKPRPVILDP 981
T F+TAQGF+TVLELV K+K+L I+W YY+F++ V YL +QLKK RPVILDP
Sbjct: 244 TKFNTAQGFRTVLELVTKYKQLRIYWTVYYDFRHQEVSEYLHQQLKKDRPVILDP 298
>ref|NP_291019.1| 2'-5' oligoadenylate synthetase 1C [Mus musculus].
Length = 362
Score = 296 bits (758), Expect = 2e-80
Identities = 154/298 (51%), Positives = 202/298 (67%), Gaps = 5/298 (1%)
Frame = +1
Query: 103 RDLDKFIEDHLLPNTCFRTQVKEAIDIVCGFLKERCFQGTADPVRXXXXXXXXXXXXXTT 282
R+LD+FI D+L P+T F T+++ ID + FLKERCFQG A PVR T
Sbjct: 11 RELDEFICDYLFPDTTFLTELRADIDSISAFLKERCFQGAAHPVRVSRVVMGGSYDEHTA 70
Query: 283 LRGRSDADLVVFLTKLTSFEDQLQLREEFIQEIRRQLEACQKEQKFKVTFEVQTPRQENP 462
L+G+S+A +V+F LTSFE+QL+ R EF++EI++ L Q+E+ FKV FEVQ+ + N
Sbjct: 71 LKGKSEAKMVLFFNNLTSFEEQLKRRGEFVEEIQKHLCQLQQEKPFKVKFEVQSSEEPNS 130
Query: 463 RALSFVLSSPQLQQEVEFDVLPAFDALGQWTPGYKPNPE----IYVQLIKECKSLGKEGE 630
R+LSF LSSP+LQQEVEFDV PA+D L + P+ +Y QLI EC +L KEG+
Sbjct: 131 RSLSFKLSSPELQQEVEFDVQPAYDVLYELRNNTYAEPQFYNKVYAQLIHECTTLEKEGD 190
Query: 631 FSTCFTELQRDFLRNRPTKLKSLIRLVKHWYQTCKKPHGNKLPPQYALELLTVYAWEQGS 810
FS CFT+L ++F+R R KL +LIRLVKHWYQ CK+ LPPQYALELLTVY WE +
Sbjct: 191 FSICFTDLHQNFMRYRAPKLWNLIRLVKHWYQLCKEKLREPLPPQYALELLTVYVWEHSN 250
Query: 811 -GKTDFSTAQGFQTVLELVLKHKKLCIFWEAYYNFKNPVVGRYLTEQLKKPRPVILDP 981
+ +TA+ F+T LELV +K L I+W YY+F++ V YL QLKK RP+ILDP
Sbjct: 251 KNQEKVTTAKNFRTFLELVAYYKNLRIYWTWYYDFRHQEVCAYLCRQLKKARPLILDP 308
>ref|NP_660262.2| 2'-5' oligoadenylate synthetase 2 [Mus musculus].
Length = 742
Score = 291 bits (746), Expect = 4e-79
Identities = 154/299 (51%), Positives = 202/299 (67%), Gaps = 3/299 (1%)
Frame = +1
Query: 94 TPVRDLDKFIEDHLLPNTCFRTQVKEAIDIVCGFLKERCFQGTADPVRXXXXXXXXXXXX 273
TP L+KFI+D L PN F Q+KEA+DI+C FLK CF + V
Sbjct: 382 TPSHLLNKFIKDFLQPNKLFLKQIKEAVDIICSFLKNVCFLNSDTKV--LKTVKGGSTAK 439
Query: 274 XTTLRGRSDADLVVFLTKLTSFEDQLQLREEFIQEIRRQLEACQKEQKFKVTFEVQTPRQ 453
T L+ SDAD+VVFL+ L S++ R +F+QEI++QLE + Q+++VTFE+ +
Sbjct: 440 GTALKRGSDADIVVFLSSLESYDSLKTNRSQFVQEIQKQLEEFVQAQEWEVTFEIS--KW 497
Query: 454 ENPRALSFVLSSPQLQQEVEFDVLPAFDALGQWTPGYKPNPEIYVQLIKECKSLG-KEGE 630
+ PR LSF L S L + VEFDVLPA+DALGQ + PE Y LI+ C S KEGE
Sbjct: 498 KAPRVLSFTLKSKTLNESVEFDVLPAYDALGQLRSDFTLRPEAYKDLIELCASQDIKEGE 557
Query: 631 FSTCFTELQRDFLRNRPTKLKSLIRLVKHWYQTCKKPHGNK--LPPQYALELLTVYAWEQ 804
FS CFTELQR+F++ RPTKLKSL+RL+KHWY+ ++ K LPP+YALELLTVYAWEQ
Sbjct: 558 FSICFTELQRNFIQTRPTKLKSLLRLIKHWYKQYERKMKPKASLPPKYALELLTVYAWEQ 617
Query: 805 GSGKTDFSTAQGFQTVLELVLKHKKLCIFWEAYYNFKNPVVGRYLTEQLKKPRPVILDP 981
GSG DF A+GF+TVL+LV+K+++LCIFW YNF+ + ++L Q++K RPVILDP
Sbjct: 618 GSGTDDFDIAEGFRTVLDLVIKYRQLCIFWTVNYNFEEEYMRKFLLTQIQKKRPVILDP 676
Score = 164 bits (416), Expect = 7e-41
Identities = 106/299 (35%), Positives = 155/299 (51%), Gaps = 4/299 (1%)
Frame = +1
Query: 97 PVRDLDKFIEDHLLPNTCFRTQVKEAIDIVCGFLKERCFQGTADPVRXXXXXXXXXXXXX 276
P + L+ +I+++L PN Q+ +A+D + L+ + PV+
Sbjct: 61 PSQKLEGYIQENLKPNRESLKQIDQAVDAIWDLLRSQI------PVKEVAKGGSYGRE-- 112
Query: 277 TTLRGRSDADLVVFLTKLTSFEDQLQLREEFIQEIRRQLEACQKEQKFKVTFEVQTPRQE 456
T LRG SD LV+F+ F+DQ++ ++ ++ I L+ +K+ +
Sbjct: 113 TALRGCSDGTLVLFMDCFQQFQDQIKYQDAYLDVIELWLKIHEKKSV------------K 160
Query: 457 NPRALSFVLSSPQLQQEVEFDVLPAFDALGQWTPGYKPNPEIYVQLIKECKSL-GKEGEF 633
+ AL +S P Q + +LP F+ L P+ +YV L K + GEF
Sbjct: 161 HEHALVVQVSVPG--QRILLQLLPVFNPLRS---NENPSSCVYVDLKKSMDQVRASPGEF 215
Query: 634 STCFTELQRDFLRNRPTKLKSLIRLVKHWYQTCKKPHGNKLPPQ---YALELLTVYAWEQ 804
S CFT LQ+ F + P +LK LI LVKHWY+ C++ PPQ YALELLTVYAWEQ
Sbjct: 216 SDCFTTLQQRFFKKYPQRLKDLILLVKHWYEQCQEKWKTP-PPQPLLYALELLTVYAWEQ 274
Query: 805 GSGKTDFSTAQGFQTVLELVLKHKKLCIFWEAYYNFKNPVVGRYLTEQLKKPRPVILDP 981
G DF AQG +TVL L+ + +LC++W YNF++ V L QL+ RPVILDP
Sbjct: 275 GCQAEDFDMAQGVRTVLRLIQRPTELCVYWTVNYNFEDETVRNILLHQLRSQRPVILDP 333
>ref|NP_660211.2| 2'-5' oligoadenylate synthetase 1E [Mus musculus].
Length = 356
Score = 290 bits (741), Expect = 2e-78
Identities = 158/303 (52%), Positives = 200/303 (66%), Gaps = 7/303 (2%)
Frame = +1
Query: 94 TPVRDLDKFIEDHLLPNTCFRTQVKEAIDIVCGFLKERCFQGTADPVRXXXXXXXXXXXX 273
TP+ LD FIED LLP+T F T+++ ID + FLKERCFQG P+R
Sbjct: 8 TPIWRLDNFIEDQLLPDTTFLTELRADIDSISAFLKERCFQGATHPMRVARVVMGGSYDE 67
Query: 274 XTTLRGRSDADLVVFLTKLTSFEDQLQLREEFIQEIRRQLEACQKEQKFKVTFEVQTPRQ 453
L+GRS+A++VVF LTSFEDQL+ ++ FI+EIR+ L Q+E+ K+ FEVQ+ +
Sbjct: 68 HNALKGRSEANMVVFFNDLTSFEDQLKWQQVFIEEIRKHLLQLQQEKPCKLKFEVQSSEE 127
Query: 454 ENPRALSFVLSSPQLQQEVEFDVLPAFDALGQWTPGYKPNPE------IYVQLIKECKSL 615
N R+L+F L SP+ QQEVEFDV PA+DAL + GY + E +Y QLI EC +L
Sbjct: 128 PNTRSLTFKLCSPERQQEVEFDVQPAYDAL--YEGGYCKSFESINYNKVYAQLIHECTTL 185
Query: 616 GKEGEFSTCFTELQRDFLRNRPTKLKSLIRLVKHWYQTCKKPHGNKLPPQYALELLTVYA 795
KEGEFS CFT+L + FLR R KL +LIRLVKHWYQ CK+ LPPQYALELLTVY
Sbjct: 186 EKEGEFSICFTDLHQSFLRYRAPKLWNLIRLVKHWYQLCKEKLRGPLPPQYALELLTVYV 245
Query: 796 WEQG-SGKTDFSTAQGFQTVLELVLKHKKLCIFWEAYYNFKNPVVGRYLTEQLKKPRPVI 972
WE G AQ F+TVLELV K+K L I+W +Y+F+ P + YL Q+KK RP+I
Sbjct: 246 WEFGVQDSFGLHAAQCFRTVLELVTKYKCLLIYWTWFYDFR-PEISDYLHGQIKKARPLI 304
Query: 973 LDP 981
LDP
Sbjct: 305 LDP 307
>ref|NP_598654.1| 2'-5' oligoadenylate synthetase 1D [Mus musculus].
Length = 361
Score = 287 bits (735), Expect = 8e-78
Identities = 159/302 (52%), Positives = 200/302 (66%), Gaps = 6/302 (1%)
Frame = +1
Query: 94 TPVRDLDKFIEDHLLPNTCFRTQVKEAIDIVCGFLKERCFQGTADPVRXXXXXXXXXXXX 273
TP+ LDKFIED LLP+T F T+++ ID + FL ERCFQG A PVR
Sbjct: 8 TPIWRLDKFIEDQLLPDTTFLTELRADIDSISAFLMERCFQGAAHPVRVSRVVMGGCYNE 67
Query: 274 XTTLRGRSDADLVVFLTKLTSFEDQLQLREEFIQEIRRQLEACQKEQKFKVTFEVQTPRQ 453
T L+GRS+A++VVFL LTSFEDQ + FI+EI R L Q+E+ K+ FEVQ+P++
Sbjct: 68 YTVLKGRSEANMVVFLINLTSFEDQFNGQVVFIEEIWRHLLQLQQEKLCKLKFEVQSPKE 127
Query: 454 ENPRALSFVLSSPQLQQEVEFDVLPAFDALGQWTPGYKP-----NPEIYVQLIKECKSLG 618
N R LSF LS P+ Q E+EFDV PA+DAL + +KP ++Y QL EC +L
Sbjct: 128 PNSRFLSFKLSCPERQHELEFDVQPAYDALYE-VRHFKPFDSSNYNKVYAQLTHECTTLE 186
Query: 619 KEGEFSTCFTELQRDFLRNRPTKLKSLIRLVKHWYQTCKKPHGNKLPPQYALELLTVYAW 798
KEGEFS CFT+L + FLR R KL +LIRLVKHWYQ CK+ LPPQYALELLTVY W
Sbjct: 187 KEGEFSICFTDLHQSFLRYRAPKLWNLIRLVKHWYQLCKEKLRGPLPPQYALELLTVYVW 246
Query: 799 EQGSGKT-DFSTAQGFQTVLELVLKHKKLCIFWEAYYNFKNPVVGRYLTEQLKKPRPVIL 975
E G + TAQ F+TVLELV K+K+L I+W Y+F++ + YL Q+KK RP+IL
Sbjct: 247 EYGIHENPGLHTAQCFRTVLELVTKYKRLRIYWTWCYDFQHE-ISDYLQGQIKKARPLIL 305
Query: 976 DP 981
DP
Sbjct: 306 DP 307
>ref|NP_660263.1| 2'-5' oligoadenylate synthetase 1H isoform 1 [Mus musculus].
Length = 369
Score = 275 bits (702), Expect = 5e-74
Identities = 148/301 (49%), Positives = 197/301 (65%), Gaps = 5/301 (1%)
Frame = +1
Query: 94 TPVRDLDKFIEDHLLPNTCFRTQVKEAIDIVCGFLKERCFQGTADPVRXXXXXXXXXXXX 273
TP LDKFIE HLL + F T+++ ++ + FLKERCFQG A P+R
Sbjct: 15 TPAWRLDKFIEGHLLGDITFLTELRTDVNSISAFLKERCFQGAAHPMRVSRVVMGGSYNR 74
Query: 274 XTTLRGRSDADLVVFLTKLTSFEDQLQLREEFIQEIRRQLEACQKEQKFKVTFEVQTPRQ 453
T L+GRS+ DL+VF LT F+DQ +L++E I+EI++ L Q+E++ + F+VQ+ Q
Sbjct: 75 YTVLKGRSEVDLLVFFNNLTCFDDQFKLQKEVIEEIQKHLCQFQQEKRLREKFKVQSSDQ 134
Query: 454 ENPRALSFVLSSPQLQQEVEFDVLPAFDALGQWTPGYKPNPEI----YVQLIKECKSLGK 621
N R++SF LS P+ QQEVEF + A+DAL + N EI Y +LI+EC LGK
Sbjct: 135 PNFRSVSFKLSYPKFQQEVEFHMQTAYDALYEVRRKENHNCEIYNKVYARLIRECTMLGK 194
Query: 622 EGEFSTCFTELQRDFLRNRPTKLKSLIRLVKHWYQTCKKPHGNKLPPQYALELLTVYAWE 801
EGEF+ CF ELQ+DFL RP +LK+LI LVKHWYQ CK+ LPPQYALELLTVYAWE
Sbjct: 195 EGEFNICFMELQQDFLWKRPCELKNLICLVKHWYQLCKEKLREPLPPQYALELLTVYAWE 254
Query: 802 -QGSGKTDFSTAQGFQTVLELVLKHKKLCIFWEAYYNFKNPVVGRYLTEQLKKPRPVILD 978
+ K + TA+GF+TVLEL+ K+ L I+W YY+ + V YL Q+K+ P+ILD
Sbjct: 255 HELPDKHETQTARGFRTVLELITKYLCLRIYWTLYYDVLHEQVNAYLYSQVKRVSPLILD 314
Query: 979 P 981
P
Sbjct: 315 P 315
Database: RefSeq44_MP.fasta
Posted date: Nov 15, 2010 4:36 PM
Number of letters in database: 15,452,059
Number of sequences in database: 29,866
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 29866
Number of Hits to DB: 30,769,264
Number of extensions: 791906
Number of successful extensions: 2910
Number of sequences better than 1.0e-05: 13
Number of HSP's gapped: 2857
Number of HSP's successfully gapped: 16
Length of query: 327
Length of database: 15,452,059
Length adjustment: 102
Effective length of query: 225
Effective length of database: 12,405,727
Effective search space: 2791288575
Effective search space used: 2791288575
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel44
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20070806C-007549
(983 letters)
Database: RefSeq44_SP.fasta
20,576 sequences; 9,542,844 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_999468.1| 2'-5'-oligoadenylate synthase 1 [Sus scrofa]. 540 e-154
Alignment gi|NP_001026966.1| 2'-5'-oligoadenylate synthase 2 [Sus scrofa]. 290 7e-79
Alignment gi|XP_003132958.1| PREDICTED: 2'-5'-oligoadenylate synthase 1-l... 205 3e-53
Alignment gi|NP_001026960.1| 59 kDa 2'-5'-oligoadenylate synthase-like pr... 174 4e-44
>ref|NP_999468.1| 2'-5'-oligoadenylate synthase 1 [Sus scrofa].
Length = 349
Score = 540 bits (1392), Expect = e-154
Identities = 265/296 (89%), Positives = 273/296 (92%)
Frame = +1
Query: 94 TPVRDLDKFIEDHLLPNTCFRTQVKEAIDIVCGFLKERCFQGTADPVRXXXXXXXXXXXX 273
TP RDLDKFIEDHLLPNTCFRTQVKEAIDIVC FLKERCFQGTADPVR
Sbjct: 6 TPARDLDKFIEDHLLPNTCFRTQVKEAIDIVCRFLKERCFQGTADPVRVSKVVKGGSSGK 65
Query: 274 XTTLRGRSDADLVVFLTKLTSFEDQLQLREEFIQEIRRQLEACQKEQKFKVTFEVQTPRQ 453
TTLRGRSDADLVVFLTKLTSFEDQL+ R EFIQEIRRQLEACQ+EQKFKVTFEVQ+PR+
Sbjct: 66 GTTLRGRSDADLVVFLTKLTSFEDQLRRRGEFIQEIRRQLEACQREQKFKVTFEVQSPRR 125
Query: 454 ENPRALSFVLSSPQLQQEVEFDVLPAFDALGQWTPGYKPNPEIYVQLIKECKSLGKEGEF 633
ENPRALSFVLSSPQLQQEVEFDVLPAFDALGQWTPGYKPNPEIYVQLIKECKS GKEGEF
Sbjct: 126 ENPRALSFVLSSPQLQQEVEFDVLPAFDALGQWTPGYKPNPEIYVQLIKECKSRGKEGEF 185
Query: 634 STCFTELQRDFLRNRPTKLKSLIRLVKHWYQTCKKPHGNKLPPQYALELLTVYAWEQGSG 813
STCFTELQRDFLRNRPTKLKSLIRLVKHWYQTCKK HGNKLPPQYALELLTVYAWEQGS
Sbjct: 186 STCFTELQRDFLRNRPTKLKSLIRLVKHWYQTCKKTHGNKLPPQYALELLTVYAWEQGSR 245
Query: 814 KTDFSTAQGFQTVLELVLKHKKLCIFWEAYYNFKNPVVGRYLTEQLKKPRPVILDP 981
KTDFSTAQGFQTVLELVLKH+KLCIFWEAYY+F NPVVGR + +QLKKPRPVILDP
Sbjct: 246 KTDFSTAQGFQTVLELVLKHQKLCIFWEAYYDFTNPVVGRCMLQQLKKPRPVILDP 301
>ref|NP_001026966.1| 2'-5'-oligoadenylate synthase 2 [Sus scrofa].
Length = 707
Score = 290 bits (742), Expect = 7e-79
Identities = 158/301 (52%), Positives = 201/301 (66%), Gaps = 5/301 (1%)
Frame = +1
Query: 94 TPVRDLDKFIEDHLLPNTCFRTQVKEAIDIVCGFLKERCFQGTADPVRXXXXXXXXXXXX 273
TP LDKFI+D L P+ F Q K+A+DI+C FLKE CF+ +A V+
Sbjct: 341 TPSHHLDKFIKDFLQPDKTFLDQTKKAVDIICKFLKENCFRHSATKVQKIVKGGSTAKG- 399
Query: 274 XTTLRGRSDADLVVFLTKLTSFEDQLQLREEFIQEIRRQLEACQKEQKFKVTFEVQTPRQ 453
T SDADLVVF L S+ Q R I+EI +QLEACQ+ Q F+VTFE+ +
Sbjct: 400 --TALKNSDADLVVFTDLLKSYTSQKNERCTIIKEIHKQLEACQQAQDFEVTFEIS--KW 455
Query: 454 ENPRALSFVLSSPQLQQEVEFDVLPAFDALGQWTPGYKPNPEIYVQLIKECKS---LGKE 624
+ PR LSF L S L + V FDVLPAF+ALG G P+P+IY +LI KS LG
Sbjct: 456 KAPRVLSFSLKSKVLNECVHFDVLPAFNALGDLKSGSAPSPKIYAELISLYKSSDILG-- 513
Query: 625 GEFSTCFTELQRDFLRNRPTKLKSLIRLVKHWYQTCKKPHGNK--LPPQYALELLTVYAW 798
GEFSTCFT+LQRDF+R++PTKLK LIRLVKHWY+ C++ K LPP+YALELLT+YAW
Sbjct: 514 GEFSTCFTKLQRDFVRSQPTKLKDLIRLVKHWYKWCERKLKQKGSLPPKYALELLTIYAW 573
Query: 799 EQGSGKTDFSTAQGFQTVLELVLKHKKLCIFWEAYYNFKNPVVGRYLTEQLKKPRPVILD 978
E+GSG F TA+GF+TVL+L+ +++ LCIFW YNF N +V +L Q+++ RPVILD
Sbjct: 574 EKGSGVLSFDTAEGFRTVLKLITEYQHLCIFWTVNYNFDNEIVRNFLLAQMQRTRPVILD 633
Query: 979 P 981
P
Sbjct: 634 P 634
Score = 197 bits (500), Expect = 8e-51
Identities = 115/299 (38%), Positives = 158/299 (52%), Gaps = 2/299 (0%)
Frame = +1
Query: 91 DTPVRDLDKFIEDHLLPNTCFRTQVKEAIDIVCGFLKERCFQGTADPVRXXXXXXXXXXX 270
D P + L +F++++L P+ + Q+ + +D +C L Q
Sbjct: 10 DRPPQKLGEFVQNNLRPSEDCQKQIDQTVDTICKVL-----QDAEQLPLVISVARGGSYG 64
Query: 271 XXTTLRGRSDADLVVFLTKLTSFEDQLQLREEFIQEIRRQLEACQKEQKFKVTFEVQTPR 450
T LRG SD LV+F++ L F+DQ + E + +I QL+ CQ +K + E+Q
Sbjct: 65 RKTVLRGNSDGSLVIFISDLEKFQDQSKNHSELLSQIWAQLKCCQLTRKLEAKMEIQN-F 123
Query: 451 QENPRALSFVLSSPQLQQEVEFDVLPAFDALGQWTPGYKPNPEIYVQLIKECKSL-GKEG 627
P + +Q + F +LPAF+ALG KP+P Y L + + G
Sbjct: 124 NSGPTTIQLFAK----EQSITFKILPAFNALGL---SEKPSPWTYRDLKRSLDMMKASPG 176
Query: 628 EFSTCFTELQRDFLRNRPTKLKSLIRLVKHWYQTCKKPHGNKLP-PQYALELLTVYAWEQ 804
EFS CFTELQ F N P KLK LI LVK+WYQ C++ P YALELLTVYAWEQ
Sbjct: 177 EFSVCFTELQERFFNNLPRKLKDLILLVKYWYQQCQEKLAVSFQLPVYALELLTVYAWEQ 236
Query: 805 GSGKTDFSTAQGFQTVLELVLKHKKLCIFWEAYYNFKNPVVGRYLTEQLKKPRPVILDP 981
G G DF A+G +TVL L+ K +LC++W YNF++ V L QL+ RPVILDP
Sbjct: 237 GCGAEDFDIAEGLRTVLGLIRKPGELCVYWTVNYNFEDETVRNVLLGQLRARRPVILDP 295
>ref|XP_003132958.1| PREDICTED: 2'-5'-oligoadenylate synthase 1-like [Sus scrofa].
Length = 192
Score = 205 bits (521), Expect = 3e-53
Identities = 110/153 (71%), Positives = 116/153 (75%)
Frame = +1
Query: 91 DTPVRDLDKFIEDHLLPNTCFRTQVKEAIDIVCGFLKERCFQGTADPVRXXXXXXXXXXX 270
+T DKFIEDHLLPNTCFRTQ GTADPVR
Sbjct: 32 NTQANQRDKFIEDHLLPNTCFRTQ------------------GTADPVRVSKVVKGGSSG 73
Query: 271 XXTTLRGRSDADLVVFLTKLTSFEDQLQLREEFIQEIRRQLEACQKEQKFKVTFEVQTPR 450
TTLRGRSDADLVVFLTKLTSFEDQL+LR EFIQEIRRQLEACQ+EQKFKVTFEVQ+PR
Sbjct: 74 KGTTLRGRSDADLVVFLTKLTSFEDQLRLRGEFIQEIRRQLEACQREQKFKVTFEVQSPR 133
Query: 451 QENPRALSFVLSSPQLQQEVEFDVLPAFDALGQ 549
+ENPRALSFVLSSPQLQQEVEFDVLPAFDALG+
Sbjct: 134 RENPRALSFVLSSPQLQQEVEFDVLPAFDALGE 166
>ref|NP_001026960.1| 59 kDa 2'-5'-oligoadenylate synthase-like protein [Sus scrofa].
Length = 348
Score = 174 bits (442), Expect = 4e-44
Identities = 110/299 (36%), Positives = 164/299 (54%), Gaps = 3/299 (1%)
Frame = +1
Query: 94 TPVRDLDKFIEDHLLPNTCFRTQVKEAIDIVCGFLKERCFQGTADPVRXXXXXXXXXXXX 273
TP LD F+ L P+ + +V EA+ V FL ++CF G +
Sbjct: 6 TPASKLDTFVAKCLHPHKECKEEVLEAVRTVKKFLWQQCFPG-----KNVQVLEVGSFGN 60
Query: 274 XTTLRGRSDADLVVFLTKLTSFEDQLQLREEFIQEIRRQLEACQKEQKFKVTFEVQTPRQ 453
T LR ++ +LV FL SF + L + + ++ + L +CQ F + +
Sbjct: 61 GTVLRDSTEVELVAFLCCFRSFRETEDL-DNMLDQLSKTLCSCQGLLAFDLKDVWLV--E 117
Query: 454 ENPRALSFVLSSPQLQQEVEFDVLPAFDALGQWTPGYKPNPEIYVQLIKECKSLGKEGEF 633
E RA++F + + L+ + F ++PA+ L P P+ E+YV LI+ K G F
Sbjct: 118 EVFRAIAFTIWTKNLEGPITFTIMPAYRDL---VPHGGPSAEVYVDLIEARKP---PGNF 171
Query: 634 STCFTELQRDFLRNRPTKLKSLIRLVKHWYQTCKKPHGN--KLPPQYALELLTVYAWEQG 807
S F +LQR F+++RP KLKSL+RLVKHWY K +LPP YALELLT+YAWE G
Sbjct: 172 SPSFAKLQRSFVKHRPAKLKSLLRLVKHWYLKYVKARCPIARLPPLYALELLTIYAWEVG 231
Query: 808 SGKTD-FSTAQGFQTVLELVLKHKKLCIFWEAYYNFKNPVVGRYLTEQLKKPRPVILDP 981
+ + F +G TV+ L+ +++ LCI+W YY F+NP++ ++ EQLKK RP+ILDP
Sbjct: 232 TKAHERFHLDRGLVTVMCLLQEYQSLCIYWTNYYKFQNPIIEDFVREQLKKERPIILDP 290
Database: RefSeq44_SP.fasta
Posted date: Nov 15, 2010 4:36 PM
Number of letters in database: 9,542,844
Number of sequences in database: 20,576
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 20576
Number of Hits to DB: 19,476,906
Number of extensions: 515080
Number of successful extensions: 1902
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 1888
Number of HSP's successfully gapped: 5
Length of query: 327
Length of database: 9,542,844
Length adjustment: 98
Effective length of query: 229
Effective length of database: 7,526,396
Effective search space: 1723544684
Effective search space used: 1723544684
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)