Search to RefSeqBP_Rel44
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20070806C-007648
(1988 letters)
Database: RefSeq44_BP.fasta
33,615 sequences; 18,071,151 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001030392.1| GTP-binding protein SAR1b [Bos taurus]. 400 e-111
Alignment gi|NP_001029693.1| GTP-binding protein SAR1a [Bos taurus]. 372 e-103
Alignment gi|XP_002690878.1| PREDICTED: mCG3164-like [Bos taurus]. 98 2e-20
Alignment gi|XP_002700648.1| PREDICTED: mCG3164-like [Bos taurus]. 98 2e-20
Alignment gi|XP_002684999.1| PREDICTED: ADP-ribosylation factor-like 14-l... 98 3e-20
Alignment gi|XP_590420.1| PREDICTED: ADP-ribosylation factor-like 14 [Bos... 98 3e-20
Alignment gi|NP_788826.1| ADP-ribosylation factor 1 [Bos taurus]. 95 3e-19
Alignment gi|NP_001033168.1| ADP-ribosylation factor-like protein 2 [Bos ... 94 3e-19
Alignment gi|NP_001069250.1| ADP-ribosylation factor-like protein 6 [Bos ... 94 3e-19
Alignment gi|NP_001015571.1| ADP-ribosylation factor 3 [Bos taurus]. 94 5e-19
>ref|NP_001030392.1| GTP-binding protein SAR1b [Bos taurus].
Length = 198
Score = 400 bits (1029), Expect = e-111
Identities = 197/198 (99%), Positives = 198/198 (100%)
Frame = +1
Query: 1024 MSFIFDWIYSGFSSVLQFLGLYKKTGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPT 1203
MSFIFDWIYSGFSSVLQFLGLYKKTGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPT
Sbjct: 1 MSFIFDWIYSGFSSVLQFLGLYKKTGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPT 60
Query: 1204 SEELTIAGMTFTTFDLGGHVQARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMT 1383
SEELTIAGMTFTTFDLGGHVQARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMT
Sbjct: 61 SEELTIAGMTFTTFDLGGHVQARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMT 120
Query: 1384 DETVANVPILILGNKIDRPEAISEERLREMFGLYGQTTGKGSVSLKELNARPLEVFMCSV 1563
DETVANVPILILGNKIDRPEAISEERLREMFGLYGQTTGKG+VSLKELNARPLEVFMCSV
Sbjct: 121 DETVANVPILILGNKIDRPEAISEERLREMFGLYGQTTGKGNVSLKELNARPLEVFMCSV 180
Query: 1564 LKRQGYGEGFRWMAQYID 1617
LKRQGYGEGFRWMAQYID
Sbjct: 181 LKRQGYGEGFRWMAQYID 198
>ref|NP_001029693.1| GTP-binding protein SAR1a [Bos taurus].
Length = 198
Score = 372 bits (956), Expect = e-103
Identities = 178/198 (89%), Positives = 194/198 (97%)
Frame = +1
Query: 1024 MSFIFDWIYSGFSSVLQFLGLYKKTGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPT 1203
MSFIF+WIY+GFSSVLQFLGLYKK+GKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPT
Sbjct: 1 MSFIFEWIYNGFSSVLQFLGLYKKSGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPT 60
Query: 1204 SEELTIAGMTFTTFDLGGHVQARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMT 1383
SEELTIAGMTFTTFDLGGH QARRVWKNYLPAINGIVFLVDCADH RL+ESK EL++LMT
Sbjct: 61 SEELTIAGMTFTTFDLGGHEQARRVWKNYLPAINGIVFLVDCADHPRLMESKVELNALMT 120
Query: 1384 DETVANVPILILGNKIDRPEAISEERLREMFGLYGQTTGKGSVSLKELNARPLEVFMCSV 1563
DET++NVPILILGNKIDR +AISEE+LRE+FGLYGQTTGKG+V+LKELNARP+EVFMCSV
Sbjct: 121 DETISNVPILILGNKIDRTDAISEEKLREIFGLYGQTTGKGNVTLKELNARPMEVFMCSV 180
Query: 1564 LKRQGYGEGFRWMAQYID 1617
LKRQGYGEGFRW++QYID
Sbjct: 181 LKRQGYGEGFRWLSQYID 198
>ref|XP_002690878.1| PREDICTED: mCG3164-like [Bos taurus].
Length = 175
Score = 98.2 bits (243), Expect = 2e-20
Identities = 47/130 (36%), Positives = 79/130 (60%)
Frame = +1
Query: 1093 KTGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAGMTFTTFDLGGHVQAR 1272
K +++ LGLD AGKTT+L+ LK + +PT+ E +T + F +D+GG + R
Sbjct: 12 KEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGQDKIR 71
Query: 1273 RVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETVANVPILILGNKIDRPEAIS 1452
+W++Y G++F+VDCAD +R+ E+++EL ++ D + + ILI NK D P+A+
Sbjct: 72 PLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMK 131
Query: 1453 EERLREMFGL 1482
++E GL
Sbjct: 132 PHEIQEKLGL 141
>ref|XP_002700648.1| PREDICTED: mCG3164-like [Bos taurus].
Length = 175
Score = 98.2 bits (243), Expect = 2e-20
Identities = 47/130 (36%), Positives = 79/130 (60%)
Frame = +1
Query: 1093 KTGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAGMTFTTFDLGGHVQAR 1272
K +++ LGLD AGKTT+L+ LK + +PT+ E +T + F +D+GG + R
Sbjct: 12 KEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGQDKIR 71
Query: 1273 RVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETVANVPILILGNKIDRPEAIS 1452
+W++Y G++F+VDCAD +R+ E+++EL ++ D + + ILI NK D P+A+
Sbjct: 72 PLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMK 131
Query: 1453 EERLREMFGL 1482
++E GL
Sbjct: 132 PHEIQEKLGL 141
>ref|XP_002684999.1| PREDICTED: ADP-ribosylation factor-like 14-like [Bos taurus].
Length = 192
Score = 97.8 bits (242), Expect = 3e-20
Identities = 58/176 (32%), Positives = 100/176 (56%), Gaps = 2/176 (1%)
Frame = +1
Query: 1093 KTGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIA-GMTFTTFDLGGHVQA 1269
K +++ LGLD+AGK+TLL+ LK D+ +PT+ E + +A G++ T +D+GG +
Sbjct: 12 KQARILLLGLDSAGKSTLLYKLKLDKDIVTIPTVGFNVEMIELAKGVSLTVWDVGGQEKM 71
Query: 1270 RRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETVANVPILILGNKIDRPEAI 1449
R W Y +G+V++VD D +RL +S++E + ++ +E + NVP+++L NK D P A+
Sbjct: 72 RATWGLYCENTDGLVYVVDSTDTQRLEDSRKEFEHILKNEYIKNVPVVLLANKQDMPGAL 131
Query: 1450 SEERLREMFGLYGQTTGKGSVSLKEL-NARPLEVFMCSVLKRQGYGEGFRWMAQYI 1614
S E + MF +K+L + R V C + G EGF+ + ++
Sbjct: 132 SAEDITRMF------------KVKQLCSDRNWCVQPCCAVTGDGLMEGFQKLTGFV 175
>ref|XP_590420.1| PREDICTED: ADP-ribosylation factor-like 14 [Bos taurus].
Length = 192
Score = 97.8 bits (242), Expect = 3e-20
Identities = 58/176 (32%), Positives = 100/176 (56%), Gaps = 2/176 (1%)
Frame = +1
Query: 1093 KTGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIA-GMTFTTFDLGGHVQA 1269
K +++ LGLD+AGK+TLL+ LK D+ +PT+ E + +A G++ T +D+GG +
Sbjct: 12 KQARILLLGLDSAGKSTLLYKLKLDKDIVTIPTVGFNVEMIELAKGVSLTVWDVGGQEKM 71
Query: 1270 RRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETVANVPILILGNKIDRPEAI 1449
R W Y +G+V++VD D +RL +S++E + ++ +E + NVP+++L NK D P A+
Sbjct: 72 RATWGLYCENTDGLVYVVDSTDTQRLEDSRKEFEHILKNEYIKNVPVVLLANKQDMPGAL 131
Query: 1450 SEERLREMFGLYGQTTGKGSVSLKEL-NARPLEVFMCSVLKRQGYGEGFRWMAQYI 1614
S E + MF +K+L + R V C + G EGF+ + ++
Sbjct: 132 SAEDITRMF------------KVKQLCSDRNWCVQPCCAVTGDGLMEGFQKLTGFV 175
>ref|NP_788826.1| ADP-ribosylation factor 1 [Bos taurus].
Length = 181
Score = 94.7 bits (234), Expect = 3e-19
Identities = 46/138 (33%), Positives = 84/138 (60%), Gaps = 1/138 (0%)
Frame = +1
Query: 1075 FLGLY-KKTGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAGMTFTTFDL 1251
F GL+ KK +++ +GLD AGKTT+L+ LK + +PT+ E + ++FT +D+
Sbjct: 9 FKGLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDV 68
Query: 1252 GGHVQARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETVANVPILILGNKI 1431
GG + R +W++Y G++F+VD D ER+ E++EEL ++ ++ + + +L+ NK
Sbjct: 69 GGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQ 128
Query: 1432 DRPEAISEERLREMFGLY 1485
D P A++ + + GL+
Sbjct: 129 DLPNAMNAAEITDKLGLH 146
>ref|NP_001033168.1| ADP-ribosylation factor-like protein 2 [Bos taurus].
Length = 184
Score = 94.4 bits (233), Expect = 3e-19
Identities = 48/143 (33%), Positives = 80/143 (55%)
Frame = +1
Query: 1054 GFSSVLQFLGLYKKTGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAGMT 1233
G ++L+ + ++ +L+ LGLDNAGKTT+L + + PTL + L G
Sbjct: 2 GLLTILKKMKQKERELRLLMLGLDNAGKTTILKKFNGEDIDTISPTLGFNIKTLEHRGFK 61
Query: 1234 FTTFDLGGHVQARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETVANVPIL 1413
+D+GG R W+NY + +G++++VD AD +R+ + + EL +L+ +E +A +L
Sbjct: 62 LNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQNLLVEERLAGATLL 121
Query: 1414 ILGNKIDRPEAISEERLREMFGL 1482
I NK D P A+S +RE L
Sbjct: 122 IFANKQDLPGALSSNAIREALEL 144
>ref|NP_001069250.1| ADP-ribosylation factor-like protein 6 [Bos taurus].
Length = 186
Score = 94.4 bits (233), Expect = 3e-19
Identities = 52/183 (28%), Positives = 99/183 (54%), Gaps = 4/183 (2%)
Frame = +1
Query: 1078 LGLYKKTGKLVFLGLDNAGKTTLLHMLKDDRLGQH--VPTLHPTSEELTIAGMTFTTFDL 1251
LGL KK ++ LGLDN+GKTT+++ LK VPT+ + ++ + ++FT FD+
Sbjct: 11 LGLKKKEVHVLCLGLDNSGKTTIINKLKPSNAQSQDIVPTIGFSIQKFKSSSLSFTVFDM 70
Query: 1252 GGHVQARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETVAN--VPILILGN 1425
G + R +W++Y I+F++D +D R++ +KEEL +L+ + + +PIL N
Sbjct: 71 SGQGRYRNLWEHYYKEGQAIIFVIDSSDKLRMVVAKEELRTLLNHPDIKHRRIPILFFAN 130
Query: 1426 KIDRPEAISEERLREMFGLYGQTTGKGSVSLKELNARPLEVFMCSVLKRQGYGEGFRWMA 1605
K+D +A++ ++ ++ + L+++ +P + +K +G EG W+
Sbjct: 131 KMDLRDALTSVKVSQL------------LCLEDIKDKPWHICASDAIKGEGLQEGVDWLQ 178
Query: 1606 QYI 1614
I
Sbjct: 179 DQI 181
>ref|NP_001015571.1| ADP-ribosylation factor 3 [Bos taurus].
Length = 181
Score = 94.0 bits (232), Expect = 5e-19
Identities = 53/186 (28%), Positives = 97/186 (52%)
Frame = +1
Query: 1057 FSSVLQFLGLYKKTGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAGMTF 1236
F ++L+ L + KK +++ +GLD AGKTT+L+ LK + +PT+ E + ++F
Sbjct: 5 FGNLLKSL-IGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISF 63
Query: 1237 TTFDLGGHVQARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETVANVPILI 1416
T +D+GG + R +W++Y G++F+VD D ER+ E++EEL ++ ++ + + +L+
Sbjct: 64 TVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLV 123
Query: 1417 LGNKIDRPEAISEERLREMFGLYGQTTGKGSVSLKELNARPLEVFMCSVLKRQGYGEGFR 1596
NK D P A++ + + GL+ L R + G EG
Sbjct: 124 FANKQDLPNAMNAAEITDKLGLH------------SLRHRNWYIQATCATSGDGLYEGLD 171
Query: 1597 WMAQYI 1614
W+A +
Sbjct: 172 WLANQL 177
Database: RefSeq44_BP.fasta
Posted date: Nov 15, 2010 4:36 PM
Number of letters in database: 18,071,151
Number of sequences in database: 33,615
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33615
Number of Hits to DB: 73,982,064
Number of extensions: 1966220
Number of successful extensions: 9236
Number of sequences better than 1.0e-05: 41
Number of HSP's gapped: 9127
Number of HSP's successfully gapped: 41
Length of query: 662
Length of database: 18,071,151
Length adjustment: 109
Effective length of query: 553
Effective length of database: 14,407,116
Effective search space: 7967135148
Effective search space used: 7967135148
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqCP_Rel44
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20070806C-007648
(1988 letters)
Database: RefSeq44_CP.fasta
33,359 sequences; 18,921,627 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_538630.2| PREDICTED: similar to GTP-binding protein SAR1b... 400 e-111
Alignment gi|XP_536379.1| PREDICTED: similar to SAR1a gene homolog 1 isof... 372 e-103
Alignment gi|XP_861292.1| PREDICTED: similar to SAR1a gene homolog 1 isof... 149 7e-36
Alignment gi|XP_861261.1| PREDICTED: similar to SAR1a gene homolog 1 isof... 149 7e-36
Alignment gi|XP_849898.1| PREDICTED: similar to ADP-ribosylation factor-l... 100 5e-21
Alignment gi|XP_547801.1| PREDICTED: similar to ADP-ribosylation factor 6... 98 3e-20
Alignment gi|XP_540874.2| PREDICTED: similar to ADP-ribosylation factor-l... 96 2e-19
Alignment gi|XP_545258.1| PREDICTED: similar to ADP-ribosylation factor 7... 95 2e-19
Alignment gi|XP_544360.1| PREDICTED: similar to GTP-binding protein ARD-1... 95 2e-19
Alignment gi|XP_543688.2| PREDICTED: similar to ADP-ribosylation factor 3... 94 5e-19
>ref|XP_538630.2| PREDICTED: similar to GTP-binding protein SAR1b (GTBPB) [Canis
familiaris].
Length = 198
Score = 400 bits (1028), Expect = e-111
Identities = 196/198 (98%), Positives = 198/198 (100%)
Frame = +1
Query: 1024 MSFIFDWIYSGFSSVLQFLGLYKKTGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPT 1203
MSFIFDWIYSGFSSVLQFLGLYKKTGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPT
Sbjct: 1 MSFIFDWIYSGFSSVLQFLGLYKKTGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPT 60
Query: 1204 SEELTIAGMTFTTFDLGGHVQARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMT 1383
SEELTIAGMTFTTFDLGGHVQARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMT
Sbjct: 61 SEELTIAGMTFTTFDLGGHVQARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMT 120
Query: 1384 DETVANVPILILGNKIDRPEAISEERLREMFGLYGQTTGKGSVSLKELNARPLEVFMCSV 1563
DET+ANVPILILGNKIDRPEAISEERLREMFGLYGQTTGKG+VSLKELNARPLEVFMCSV
Sbjct: 121 DETIANVPILILGNKIDRPEAISEERLREMFGLYGQTTGKGNVSLKELNARPLEVFMCSV 180
Query: 1564 LKRQGYGEGFRWMAQYID 1617
LKRQGYGEGFRWMAQYID
Sbjct: 181 LKRQGYGEGFRWMAQYID 198
>ref|XP_536379.1| PREDICTED: similar to SAR1a gene homolog 1 isoform 2 [Canis
familiaris].
Length = 198
Score = 372 bits (956), Expect = e-103
Identities = 178/198 (89%), Positives = 194/198 (97%)
Frame = +1
Query: 1024 MSFIFDWIYSGFSSVLQFLGLYKKTGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPT 1203
MSFIF+WIY+GFSSVLQFLGLYKK+GKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPT
Sbjct: 1 MSFIFEWIYNGFSSVLQFLGLYKKSGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPT 60
Query: 1204 SEELTIAGMTFTTFDLGGHVQARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMT 1383
SEELTIAGMTFTTFDLGGH QARRVWKNYLPAINGIVFLVDCADH RL+ESK EL++LMT
Sbjct: 61 SEELTIAGMTFTTFDLGGHEQARRVWKNYLPAINGIVFLVDCADHPRLMESKVELNALMT 120
Query: 1384 DETVANVPILILGNKIDRPEAISEERLREMFGLYGQTTGKGSVSLKELNARPLEVFMCSV 1563
DET++NVPILILGNKIDR +AISEE+LRE+FGLYGQTTGKG+V+LKELNARP+EVFMCSV
Sbjct: 121 DETISNVPILILGNKIDRTDAISEEKLREIFGLYGQTTGKGNVTLKELNARPMEVFMCSV 180
Query: 1564 LKRQGYGEGFRWMAQYID 1617
LKRQGYGEGFRW++QYID
Sbjct: 181 LKRQGYGEGFRWLSQYID 198
>ref|XP_861292.1| PREDICTED: similar to SAR1a gene homolog 1 isoform 4 [Canis
familiaris].
Length = 80
Score = 149 bits (377), Expect = 7e-36
Identities = 69/80 (86%), Positives = 79/80 (98%)
Frame = +1
Query: 1378 MTDETVANVPILILGNKIDRPEAISEERLREMFGLYGQTTGKGSVSLKELNARPLEVFMC 1557
MTDET++NVPILILGNKIDR +AISEE+LRE+FGLYGQTTGKG+V+LKELNARP+EVFMC
Sbjct: 1 MTDETISNVPILILGNKIDRTDAISEEKLREIFGLYGQTTGKGNVTLKELNARPMEVFMC 60
Query: 1558 SVLKRQGYGEGFRWMAQYID 1617
SVLKRQGYGEGFRW++QYID
Sbjct: 61 SVLKRQGYGEGFRWLSQYID 80
>ref|XP_861261.1| PREDICTED: similar to SAR1a gene homolog 1 isoform 3 [Canis
familiaris].
Length = 80
Score = 149 bits (377), Expect = 7e-36
Identities = 69/80 (86%), Positives = 79/80 (98%)
Frame = +1
Query: 1378 MTDETVANVPILILGNKIDRPEAISEERLREMFGLYGQTTGKGSVSLKELNARPLEVFMC 1557
MTDET++NVPILILGNKIDR +AISEE+LRE+FGLYGQTTGKG+V+LKELNARP+EVFMC
Sbjct: 1 MTDETISNVPILILGNKIDRTDAISEEKLREIFGLYGQTTGKGNVTLKELNARPMEVFMC 60
Query: 1558 SVLKRQGYGEGFRWMAQYID 1617
SVLKRQGYGEGFRW++QYID
Sbjct: 61 SVLKRQGYGEGFRWLSQYID 80
>ref|XP_849898.1| PREDICTED: similar to ADP-ribosylation factor-like 6 [Canis
familiaris].
Length = 317
Score = 100 bits (249), Expect = 5e-21
Identities = 75/277 (27%), Positives = 135/277 (48%), Gaps = 11/277 (3%)
Frame = +1
Query: 817 IGRGTAR-----RRNFGAWRC--SPENLRE*STRRPGRS*REFGPRQPSRLTPECRGPTP 975
+ RGT R RR G R SP+ + + PG + R+ R PE T
Sbjct: 53 VARGTPRTRAPARRLLGLRRALRSPQLV---AAAVPGPGSVRWRRREEGREAPETSPGTD 109
Query: 976 RKESRSLQSQTL*DLAMSFIFDWIYSGFSSVLQFLGLYKKTGKLVFLGLDNAGKTTLLHM 1155
+ +R+ Q+ + L ++ + I + LGL KK ++ LGLDN+GKTT+++
Sbjct: 110 GRAARA-QADSEDQLVWKYL-NHIMGLLDRLSGLLGLKKKEVHVLCLGLDNSGKTTIINK 167
Query: 1156 LKDDRLGQH--VPTLHPTSEELTIAGMTFTTFDLGGHVQARRVWKNYLPAINGIVFLVDC 1329
LK VPT+ + E+ + ++FT FD+ G + R +W++Y I+F++D
Sbjct: 168 LKPSNAQSQDIVPTIGFSIEKFKSSSLSFTVFDMSGQGRYRNLWEHYYKEGQAIIFVIDS 227
Query: 1330 ADHERLLESKEELDSLMTDETVAN--VPILILGNKIDRPEAISEERLREMFGLYGQTTGK 1503
+D R++ +KEELD+L+ + + +PIL NK+D +A++ ++ ++
Sbjct: 228 SDRLRMVVAKEELDTLLNHPDIKHRRIPILFFANKMDLRDAVTSVKVSQL---------- 277
Query: 1504 GSVSLKELNARPLEVFMCSVLKRQGYGEGFRWMAQYI 1614
+ L+ + +P + +K +G EG W+ I
Sbjct: 278 --LCLENIKDKPWHICASDAIKGEGLQEGVDWLQDQI 312
>ref|XP_547801.1| PREDICTED: similar to ADP-ribosylation factor 6 [Canis familiaris].
Length = 175
Score = 98.2 bits (243), Expect = 3e-20
Identities = 47/130 (36%), Positives = 79/130 (60%)
Frame = +1
Query: 1093 KTGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAGMTFTTFDLGGHVQAR 1272
K +++ LGLD AGKTT+L+ LK + +PT+ E +T + F +D+GG + R
Sbjct: 12 KEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGQDKIR 71
Query: 1273 RVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETVANVPILILGNKIDRPEAIS 1452
+W++Y G++F+VDCAD +R+ E+++EL ++ D + + ILI NK D P+A+
Sbjct: 72 PLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMK 131
Query: 1453 EERLREMFGL 1482
++E GL
Sbjct: 132 PHEIQEKLGL 141
>ref|XP_540874.2| PREDICTED: similar to ADP-ribosylation factor-like protein 2 isoform
1 [Canis familiaris].
Length = 184
Score = 95.5 bits (236), Expect = 2e-19
Identities = 49/143 (34%), Positives = 80/143 (55%)
Frame = +1
Query: 1054 GFSSVLQFLGLYKKTGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAGMT 1233
G ++L+ + ++ +L+ LGLDNAGKTT+L + + PTL + L G
Sbjct: 2 GLLTILKKMKQKERELRLLMLGLDNAGKTTILKKFNGEDIDTISPTLGFNIKTLEHRGFK 61
Query: 1234 FTTFDLGGHVQARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETVANVPIL 1413
+D+GG R W+NY + +G++++VD AD +R+ + + EL SL+ +E +A +L
Sbjct: 62 LNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLL 121
Query: 1414 ILGNKIDRPEAISEERLREMFGL 1482
I NK D P A+S +RE L
Sbjct: 122 IFANKQDLPGALSSNAIREALEL 144
>ref|XP_545258.1| PREDICTED: similar to ADP-ribosylation factor 7 [Canis familiaris].
Length = 192
Score = 95.1 bits (235), Expect = 2e-19
Identities = 55/175 (31%), Positives = 96/175 (54%), Gaps = 1/175 (0%)
Frame = +1
Query: 1093 KTGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIA-GMTFTTFDLGGHVQA 1269
K +++ LGLD+AGK+TLL+ LK + +PT+ E + + ++ T +D+GG +
Sbjct: 12 KQARILLLGLDSAGKSTLLYKLKLAKNISTLPTIGFNVEMIQLEKNLSLTIWDVGGQEKM 71
Query: 1270 RRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETVANVPILILGNKIDRPEAI 1449
R VW +Y +G++++VD D +RL +S EL+ ++ +E + NVP+++L NK D P A+
Sbjct: 72 RTVWDHYCENTDGLMYVVDSTDKQRLKDSSRELEHILKNEHIKNVPVVLLANKQDVPGAL 131
Query: 1450 SEERLREMFGLYGQTTGKGSVSLKELNARPLEVFMCSVLKRQGYGEGFRWMAQYI 1614
+ E + MF + K + R V C + G EGFR + ++
Sbjct: 132 TAEDITRMFKV-----------KKLCSDRNWYVQPCCAITGDGLMEGFRKLTGFV 175
>ref|XP_544360.1| PREDICTED: similar to GTP-binding protein ARD-1 (ADP-ribosylation
factor domain protein 1) (Tripartite motif protein 23)
[Canis familiaris].
Length = 574
Score = 95.1 bits (235), Expect = 2e-19
Identities = 54/171 (31%), Positives = 88/171 (51%)
Frame = +1
Query: 1102 KLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAGMTFTTFDLGGHVQARRVW 1281
++V LGLD AGKTT+L LK D Q +PT+ E + + FT +D+GG + R +W
Sbjct: 406 RVVTLGLDGAGKTTILFKLKQDEFMQPIPTIGFNVETVEYKNLKFTIWDVGGKHKLRPLW 465
Query: 1282 KNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETVANVPILILGNKIDRPEAISEER 1461
K+Y +VF+VD + +R+ E+ EL L+T++ + + +LI NK D A+S E
Sbjct: 466 KHYYLNTQAVVFVVDSSHRDRVSEAHSELAKLLTEKELRDALLLIFANKQDVAGALSVEE 525
Query: 1462 LREMFGLYGQTTGKGSVSLKELNARPLEVFMCSVLKRQGYGEGFRWMAQYI 1614
+ E+ L+ G R + C G EG W+++++
Sbjct: 526 ITELLSLHKLCCG-----------RSWYIQGCDARSGMGLYEGLDWLSRHL 565
>ref|XP_543688.2| PREDICTED: similar to ADP-ribosylation factor 3 isoform 1 [Canis
familiaris].
Length = 181
Score = 94.0 bits (232), Expect = 5e-19
Identities = 53/186 (28%), Positives = 97/186 (52%)
Frame = +1
Query: 1057 FSSVLQFLGLYKKTGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAGMTF 1236
F ++L+ L + KK +++ +GLD AGKTT+L+ LK + +PT+ E + ++F
Sbjct: 5 FGNLLKSL-IGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISF 63
Query: 1237 TTFDLGGHVQARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETVANVPILI 1416
T +D+GG + R +W++Y G++F+VD D ER+ E++EEL ++ ++ + + +L+
Sbjct: 64 TVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLV 123
Query: 1417 LGNKIDRPEAISEERLREMFGLYGQTTGKGSVSLKELNARPLEVFMCSVLKRQGYGEGFR 1596
NK D P A++ + + GL+ L R + G EG
Sbjct: 124 FANKQDLPNAMNAAEITDKLGLH------------SLRHRNWYIQATCATSGDGLYEGLD 171
Query: 1597 WMAQYI 1614
W+A +
Sbjct: 172 WLANQL 177
Database: RefSeq44_CP.fasta
Posted date: Nov 15, 2010 4:36 PM
Number of letters in database: 18,921,627
Number of sequences in database: 33,359
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33359
Number of Hits to DB: 75,815,355
Number of extensions: 1989026
Number of successful extensions: 9391
Number of sequences better than 1.0e-05: 38
Number of HSP's gapped: 9284
Number of HSP's successfully gapped: 38
Length of query: 662
Length of database: 18,921,627
Length adjustment: 109
Effective length of query: 553
Effective length of database: 15,285,496
Effective search space: 8452879288
Effective search space used: 8452879288
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqHP_Rel44
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20070806C-007648
(1988 letters)
Database: RefSeq44_HP.fasta
33,950 sequences; 18,324,212 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_057187.1| GTP-binding protein SAR1b [Homo sapiens]. 401 e-111
Alignment gi|NP_001028675.1| GTP-binding protein SAR1b [Homo sapiens]. 401 e-111
Alignment gi|NP_001136120.1| GTP-binding protein SAR1a [Homo sapiens]. 372 e-103
Alignment gi|NP_064535.1| GTP-binding protein SAR1a [Homo sapiens]. 372 e-103
Alignment gi|NP_001654.1| ADP-ribosylation factor 6 [Homo sapiens]. 98 2e-20
Alignment gi|NP_816931.1| ADP-ribosylation factor-like protein 6 [Homo sa... 97 4e-20
Alignment gi|NP_115522.1| ADP-ribosylation factor-like protein 6 [Homo sa... 97 4e-20
Alignment gi|NP_001658.2| ADP-ribosylation factor-like protein 2 [Homo sa... 96 9e-20
Alignment gi|NP_001019399.1| ADP-ribosylation factor 1 [Homo sapiens]. 95 3e-19
Alignment gi|NP_001019398.1| ADP-ribosylation factor 1 [Homo sapiens]. 95 3e-19
>ref|NP_057187.1| GTP-binding protein SAR1b [Homo sapiens].
Length = 198
Score = 401 bits (1030), Expect = e-111
Identities = 196/198 (98%), Positives = 198/198 (100%)
Frame = +1
Query: 1024 MSFIFDWIYSGFSSVLQFLGLYKKTGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPT 1203
MSFIFDWIYSGFSSVLQFLGLYKKTGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPT
Sbjct: 1 MSFIFDWIYSGFSSVLQFLGLYKKTGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPT 60
Query: 1204 SEELTIAGMTFTTFDLGGHVQARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMT 1383
SEELTIAGMTFTTFDLGGHVQARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMT
Sbjct: 61 SEELTIAGMTFTTFDLGGHVQARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMT 120
Query: 1384 DETVANVPILILGNKIDRPEAISEERLREMFGLYGQTTGKGSVSLKELNARPLEVFMCSV 1563
DET+ANVPILILGNKIDRPEAISEERLREMFGLYGQTTGKGS+SLKELNARPLEVFMCSV
Sbjct: 121 DETIANVPILILGNKIDRPEAISEERLREMFGLYGQTTGKGSISLKELNARPLEVFMCSV 180
Query: 1564 LKRQGYGEGFRWMAQYID 1617
LKRQGYGEGFRWMAQYID
Sbjct: 181 LKRQGYGEGFRWMAQYID 198
>ref|NP_001028675.1| GTP-binding protein SAR1b [Homo sapiens].
Length = 198
Score = 401 bits (1030), Expect = e-111
Identities = 196/198 (98%), Positives = 198/198 (100%)
Frame = +1
Query: 1024 MSFIFDWIYSGFSSVLQFLGLYKKTGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPT 1203
MSFIFDWIYSGFSSVLQFLGLYKKTGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPT
Sbjct: 1 MSFIFDWIYSGFSSVLQFLGLYKKTGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPT 60
Query: 1204 SEELTIAGMTFTTFDLGGHVQARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMT 1383
SEELTIAGMTFTTFDLGGHVQARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMT
Sbjct: 61 SEELTIAGMTFTTFDLGGHVQARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMT 120
Query: 1384 DETVANVPILILGNKIDRPEAISEERLREMFGLYGQTTGKGSVSLKELNARPLEVFMCSV 1563
DET+ANVPILILGNKIDRPEAISEERLREMFGLYGQTTGKGS+SLKELNARPLEVFMCSV
Sbjct: 121 DETIANVPILILGNKIDRPEAISEERLREMFGLYGQTTGKGSISLKELNARPLEVFMCSV 180
Query: 1564 LKRQGYGEGFRWMAQYID 1617
LKRQGYGEGFRWMAQYID
Sbjct: 181 LKRQGYGEGFRWMAQYID 198
>ref|NP_001136120.1| GTP-binding protein SAR1a [Homo sapiens].
Length = 198
Score = 372 bits (956), Expect = e-103
Identities = 178/198 (89%), Positives = 194/198 (97%)
Frame = +1
Query: 1024 MSFIFDWIYSGFSSVLQFLGLYKKTGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPT 1203
MSFIF+WIY+GFSSVLQFLGLYKK+GKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPT
Sbjct: 1 MSFIFEWIYNGFSSVLQFLGLYKKSGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPT 60
Query: 1204 SEELTIAGMTFTTFDLGGHVQARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMT 1383
SEELTIAGMTFTTFDLGGH QARRVWKNYLPAINGIVFLVDCADH RL+ESK EL++LMT
Sbjct: 61 SEELTIAGMTFTTFDLGGHEQARRVWKNYLPAINGIVFLVDCADHSRLVESKVELNALMT 120
Query: 1384 DETVANVPILILGNKIDRPEAISEERLREMFGLYGQTTGKGSVSLKELNARPLEVFMCSV 1563
DET++NVPILILGNKIDR +AISEE+LRE+FGLYGQTTGKG+V+LKELNARP+EVFMCSV
Sbjct: 121 DETISNVPILILGNKIDRTDAISEEKLREIFGLYGQTTGKGNVTLKELNARPMEVFMCSV 180
Query: 1564 LKRQGYGEGFRWMAQYID 1617
LKRQGYGEGFRW++QYID
Sbjct: 181 LKRQGYGEGFRWLSQYID 198
>ref|NP_064535.1| GTP-binding protein SAR1a [Homo sapiens].
Length = 198
Score = 372 bits (956), Expect = e-103
Identities = 178/198 (89%), Positives = 194/198 (97%)
Frame = +1
Query: 1024 MSFIFDWIYSGFSSVLQFLGLYKKTGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPT 1203
MSFIF+WIY+GFSSVLQFLGLYKK+GKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPT
Sbjct: 1 MSFIFEWIYNGFSSVLQFLGLYKKSGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPT 60
Query: 1204 SEELTIAGMTFTTFDLGGHVQARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMT 1383
SEELTIAGMTFTTFDLGGH QARRVWKNYLPAINGIVFLVDCADH RL+ESK EL++LMT
Sbjct: 61 SEELTIAGMTFTTFDLGGHEQARRVWKNYLPAINGIVFLVDCADHSRLVESKVELNALMT 120
Query: 1384 DETVANVPILILGNKIDRPEAISEERLREMFGLYGQTTGKGSVSLKELNARPLEVFMCSV 1563
DET++NVPILILGNKIDR +AISEE+LRE+FGLYGQTTGKG+V+LKELNARP+EVFMCSV
Sbjct: 121 DETISNVPILILGNKIDRTDAISEEKLREIFGLYGQTTGKGNVTLKELNARPMEVFMCSV 180
Query: 1564 LKRQGYGEGFRWMAQYID 1617
LKRQGYGEGFRW++QYID
Sbjct: 181 LKRQGYGEGFRWLSQYID 198
>ref|NP_001654.1| ADP-ribosylation factor 6 [Homo sapiens].
Length = 175
Score = 98.2 bits (243), Expect = 2e-20
Identities = 47/130 (36%), Positives = 79/130 (60%)
Frame = +1
Query: 1093 KTGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAGMTFTTFDLGGHVQAR 1272
K +++ LGLD AGKTT+L+ LK + +PT+ E +T + F +D+GG + R
Sbjct: 12 KEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGQDKIR 71
Query: 1273 RVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETVANVPILILGNKIDRPEAIS 1452
+W++Y G++F+VDCAD +R+ E+++EL ++ D + + ILI NK D P+A+
Sbjct: 72 PLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMK 131
Query: 1453 EERLREMFGL 1482
++E GL
Sbjct: 132 PHEIQEKLGL 141
>ref|NP_816931.1| ADP-ribosylation factor-like protein 6 [Homo sapiens].
Length = 186
Score = 97.4 bits (241), Expect = 4e-20
Identities = 53/183 (28%), Positives = 99/183 (54%), Gaps = 4/183 (2%)
Frame = +1
Query: 1078 LGLYKKTGKLVFLGLDNAGKTTLLHMLKDDRLGQH--VPTLHPTSEELTIAGMTFTTFDL 1251
LGL KK ++ LGLDN+GKTT+++ LK +PT+ + E+ + ++FT FD+
Sbjct: 11 LGLKKKEVHVLCLGLDNSGKTTIINKLKPSNAQSQNILPTIGFSIEKFKSSSLSFTVFDM 70
Query: 1252 GGHVQARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETVAN--VPILILGN 1425
G + R +W++Y I+F++D +D R++ +KEELD+L+ + + +PIL N
Sbjct: 71 SGQGRYRNLWEHYYKEGQAIIFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFAN 130
Query: 1426 KIDRPEAISEERLREMFGLYGQTTGKGSVSLKELNARPLEVFMCSVLKRQGYGEGFRWMA 1605
K+D +A++ ++ ++ + L+ + +P + +K +G EG W+
Sbjct: 131 KMDLRDAVTSVKVSQL------------LCLENIKDKPWHICASDAIKGEGLQEGVDWLQ 178
Query: 1606 QYI 1614
I
Sbjct: 179 DQI 181
>ref|NP_115522.1| ADP-ribosylation factor-like protein 6 [Homo sapiens].
Length = 186
Score = 97.4 bits (241), Expect = 4e-20
Identities = 53/183 (28%), Positives = 99/183 (54%), Gaps = 4/183 (2%)
Frame = +1
Query: 1078 LGLYKKTGKLVFLGLDNAGKTTLLHMLKDDRLGQH--VPTLHPTSEELTIAGMTFTTFDL 1251
LGL KK ++ LGLDN+GKTT+++ LK +PT+ + E+ + ++FT FD+
Sbjct: 11 LGLKKKEVHVLCLGLDNSGKTTIINKLKPSNAQSQNILPTIGFSIEKFKSSSLSFTVFDM 70
Query: 1252 GGHVQARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETVAN--VPILILGN 1425
G + R +W++Y I+F++D +D R++ +KEELD+L+ + + +PIL N
Sbjct: 71 SGQGRYRNLWEHYYKEGQAIIFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFAN 130
Query: 1426 KIDRPEAISEERLREMFGLYGQTTGKGSVSLKELNARPLEVFMCSVLKRQGYGEGFRWMA 1605
K+D +A++ ++ ++ + L+ + +P + +K +G EG W+
Sbjct: 131 KMDLRDAVTSVKVSQL------------LCLENIKDKPWHICASDAIKGEGLQEGVDWLQ 178
Query: 1606 QYI 1614
I
Sbjct: 179 DQI 181
>ref|NP_001658.2| ADP-ribosylation factor-like protein 2 [Homo sapiens].
Length = 184
Score = 96.3 bits (238), Expect = 9e-20
Identities = 49/143 (34%), Positives = 81/143 (56%)
Frame = +1
Query: 1054 GFSSVLQFLGLYKKTGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAGMT 1233
G ++L+ + ++ +L+ LGLDNAGKTT+L + + PTL + L G
Sbjct: 2 GLLTILKKMKQKERELRLLMLGLDNAGKTTILKKFNGEDIDTISPTLGFNIKTLEHRGFK 61
Query: 1234 FTTFDLGGHVQARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETVANVPIL 1413
+D+GG R W+NY + +G++++VD AD +R+ + + EL SL+ +E +A +L
Sbjct: 62 LNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLL 121
Query: 1414 ILGNKIDRPEAISEERLREMFGL 1482
I NK D P A+S +RE+ L
Sbjct: 122 IFANKQDLPGALSSNAIREVLEL 144
>ref|NP_001019399.1| ADP-ribosylation factor 1 [Homo sapiens].
Length = 181
Score = 94.7 bits (234), Expect = 3e-19
Identities = 46/138 (33%), Positives = 84/138 (60%), Gaps = 1/138 (0%)
Frame = +1
Query: 1075 FLGLY-KKTGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAGMTFTTFDL 1251
F GL+ KK +++ +GLD AGKTT+L+ LK + +PT+ E + ++FT +D+
Sbjct: 9 FKGLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDV 68
Query: 1252 GGHVQARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETVANVPILILGNKI 1431
GG + R +W++Y G++F+VD D ER+ E++EEL ++ ++ + + +L+ NK
Sbjct: 69 GGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQ 128
Query: 1432 DRPEAISEERLREMFGLY 1485
D P A++ + + GL+
Sbjct: 129 DLPNAMNAAEITDKLGLH 146
>ref|NP_001019398.1| ADP-ribosylation factor 1 [Homo sapiens].
Length = 181
Score = 94.7 bits (234), Expect = 3e-19
Identities = 46/138 (33%), Positives = 84/138 (60%), Gaps = 1/138 (0%)
Frame = +1
Query: 1075 FLGLY-KKTGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAGMTFTTFDL 1251
F GL+ KK +++ +GLD AGKTT+L+ LK + +PT+ E + ++FT +D+
Sbjct: 9 FKGLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDV 68
Query: 1252 GGHVQARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETVANVPILILGNKI 1431
GG + R +W++Y G++F+VD D ER+ E++EEL ++ ++ + + +L+ NK
Sbjct: 69 GGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQ 128
Query: 1432 DRPEAISEERLREMFGLY 1485
D P A++ + + GL+
Sbjct: 129 DLPNAMNAAEITDKLGLH 146
Database: RefSeq44_HP.fasta
Posted date: Nov 15, 2010 4:36 PM
Number of letters in database: 18,324,212
Number of sequences in database: 33,950
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33950
Number of Hits to DB: 74,687,222
Number of extensions: 1969316
Number of successful extensions: 9016
Number of sequences better than 1.0e-05: 48
Number of HSP's gapped: 8914
Number of HSP's successfully gapped: 48
Length of query: 662
Length of database: 18,324,212
Length adjustment: 109
Effective length of query: 553
Effective length of database: 14,623,662
Effective search space: 8086885086
Effective search space used: 8086885086
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqMP_Rel44
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20070806C-007648
(1988 letters)
Database: RefSeq44_MP.fasta
29,866 sequences; 15,452,059 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_079811.1| GTP-binding protein SAR1b [Mus musculus]. 400 e-111
Alignment gi|NP_033146.1| GTP-binding protein SAR1a [Mus musculus]. 373 e-103
Alignment gi|NP_796311.2| ADP-ribosylation factor-like protein 11 [Mus mu... 99 1e-20
Alignment gi|NP_031507.1| ADP-ribosylation factor 6 [Mus musculus]. 98 2e-20
Alignment gi|NP_062639.3| ADP-ribosylation factor-like protein 6 [Mus mus... 97 6e-20
Alignment gi|NP_001123880.1| ADP-ribosylation factor 1 [Mus musculus]. 95 2e-19
Alignment gi|NP_031502.1| ADP-ribosylation factor 1 [Mus musculus]. 95 2e-19
Alignment gi|NP_109656.1| E3 ubiquitin-protein ligase TRIM23 [Mus musculu... 94 3e-19
Alignment gi|NP_031504.1| ADP-ribosylation factor 3 [Mus musculus]. 94 4e-19
Alignment gi|NP_082119.1| ADP-ribosylation factor-like protein 14 [Mus mu... 93 7e-19
>ref|NP_079811.1| GTP-binding protein SAR1b [Mus musculus].
Length = 198
Score = 400 bits (1027), Expect = e-111
Identities = 196/198 (98%), Positives = 198/198 (100%)
Frame = +1
Query: 1024 MSFIFDWIYSGFSSVLQFLGLYKKTGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPT 1203
MSFIFDWIYSGFSSVLQFLGLYKK+GKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPT
Sbjct: 1 MSFIFDWIYSGFSSVLQFLGLYKKSGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPT 60
Query: 1204 SEELTIAGMTFTTFDLGGHVQARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMT 1383
SEELTIAGMTFTTFDLGGHVQARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMT
Sbjct: 61 SEELTIAGMTFTTFDLGGHVQARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMT 120
Query: 1384 DETVANVPILILGNKIDRPEAISEERLREMFGLYGQTTGKGSVSLKELNARPLEVFMCSV 1563
DET+ANVPILILGNKIDRPEAISEERLREMFGLYGQTTGKGSVSLKELNARPLEVFMCSV
Sbjct: 121 DETIANVPILILGNKIDRPEAISEERLREMFGLYGQTTGKGSVSLKELNARPLEVFMCSV 180
Query: 1564 LKRQGYGEGFRWMAQYID 1617
LKRQGYGEGFRWMAQYID
Sbjct: 181 LKRQGYGEGFRWMAQYID 198
>ref|NP_033146.1| GTP-binding protein SAR1a [Mus musculus].
Length = 198
Score = 373 bits (957), Expect = e-103
Identities = 178/198 (89%), Positives = 194/198 (97%)
Frame = +1
Query: 1024 MSFIFDWIYSGFSSVLQFLGLYKKTGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPT 1203
MSFIF+WIY+GFSSVLQFLGLYKK+GKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPT
Sbjct: 1 MSFIFEWIYNGFSSVLQFLGLYKKSGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPT 60
Query: 1204 SEELTIAGMTFTTFDLGGHVQARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMT 1383
SEELTIAGMTFTTFDLGGH QARRVWKNYLPAINGIVFLVDCADH RL+ESK EL++LMT
Sbjct: 61 SEELTIAGMTFTTFDLGGHEQARRVWKNYLPAINGIVFLVDCADHSRLMESKVELNALMT 120
Query: 1384 DETVANVPILILGNKIDRPEAISEERLREMFGLYGQTTGKGSVSLKELNARPLEVFMCSV 1563
DET++NVPILILGNKIDR +AISEE+LRE+FGLYGQTTGKG+V+LKELNARP+EVFMCSV
Sbjct: 121 DETISNVPILILGNKIDRTDAISEEKLREIFGLYGQTTGKGNVTLKELNARPMEVFMCSV 180
Query: 1564 LKRQGYGEGFRWMAQYID 1617
LKRQGYGEGFRW++QYID
Sbjct: 181 LKRQGYGEGFRWLSQYID 198
>ref|NP_796311.2| ADP-ribosylation factor-like protein 11 [Mus musculus].
Length = 176
Score = 99.0 bits (245), Expect = 1e-20
Identities = 59/171 (34%), Positives = 90/171 (52%), Gaps = 1/171 (0%)
Frame = +1
Query: 1087 YKKTGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAG-MTFTTFDLGGHV 1263
+K ++V +GLD+AGKTT+L+ LK ++L +PT+ E L G ++ T +D+GG
Sbjct: 9 HKAEAQVVMMGLDSAGKTTILYKLKGNQLVDTLPTVGFNVEPLEAPGHVSLTLWDIGGQT 68
Query: 1264 QARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETVANVPILILGNKIDRPE 1443
Q R WK+YL I+ +V+++D D RL E+ EL ++ D +A VP L+L NK + P
Sbjct: 69 QLRATWKDYLEGIDLLVYVLDSTDEARLPEAVAELKEVLEDPNMAGVPFLVLANKQEAPG 128
Query: 1444 AISEERLREMFGLYGQTTGKGSVSLKELNARPLEVFMCSVLKRQGYGEGFR 1596
A+ +R GL G E+ CS L QG E +
Sbjct: 129 ALPLLEIRNRLGLEG------------FQKHCWELRACSALTGQGLQEALQ 167
>ref|NP_031507.1| ADP-ribosylation factor 6 [Mus musculus].
Length = 175
Score = 98.2 bits (243), Expect = 2e-20
Identities = 47/130 (36%), Positives = 79/130 (60%)
Frame = +1
Query: 1093 KTGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAGMTFTTFDLGGHVQAR 1272
K +++ LGLD AGKTT+L+ LK + +PT+ E +T + F +D+GG + R
Sbjct: 12 KEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGQDKIR 71
Query: 1273 RVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETVANVPILILGNKIDRPEAIS 1452
+W++Y G++F+VDCAD +R+ E+++EL ++ D + + ILI NK D P+A+
Sbjct: 72 PLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMK 131
Query: 1453 EERLREMFGL 1482
++E GL
Sbjct: 132 PHEIQEKLGL 141
>ref|NP_062639.3| ADP-ribosylation factor-like protein 6 [Mus musculus].
Length = 186
Score = 96.7 bits (239), Expect = 6e-20
Identities = 53/183 (28%), Positives = 99/183 (54%), Gaps = 4/183 (2%)
Frame = +1
Query: 1078 LGLYKKTGKLVFLGLDNAGKTTLLHMLKDDRLGQH--VPTLHPTSEELTIAGMTFTTFDL 1251
LGL KK ++ LGLDN+GKTT+++ LK VPT+ + E+ + ++FT FD+
Sbjct: 11 LGLKKKEVHVLCLGLDNSGKTTIINKLKPSNAQSQDIVPTIGFSIEKFKSSSLSFTVFDM 70
Query: 1252 GGHVQARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETVAN--VPILILGN 1425
G + R +W++Y I+F++D +D R++ +KEELD+L+ + + +PIL N
Sbjct: 71 SGQGRYRNLWEHYYKDGQAIIFVIDSSDKLRMVVAKEELDTLLNHPDIKHRRIPILFFAN 130
Query: 1426 KIDRPEAISEERLREMFGLYGQTTGKGSVSLKELNARPLEVFMCSVLKRQGYGEGFRWMA 1605
K+D ++++ ++ ++ + L+ + +P + +K +G EG W+
Sbjct: 131 KMDLRDSVTSVKVSQL------------LCLESIKDKPWHICASDAIKGEGLQEGVDWLQ 178
Query: 1606 QYI 1614
I
Sbjct: 179 DQI 181
>ref|NP_001123880.1| ADP-ribosylation factor 1 [Mus musculus].
Length = 181
Score = 94.7 bits (234), Expect = 2e-19
Identities = 46/138 (33%), Positives = 84/138 (60%), Gaps = 1/138 (0%)
Frame = +1
Query: 1075 FLGLY-KKTGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAGMTFTTFDL 1251
F GL+ KK +++ +GLD AGKTT+L+ LK + +PT+ E + ++FT +D+
Sbjct: 9 FKGLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDV 68
Query: 1252 GGHVQARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETVANVPILILGNKI 1431
GG + R +W++Y G++F+VD D ER+ E++EEL ++ ++ + + +L+ NK
Sbjct: 69 GGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQ 128
Query: 1432 DRPEAISEERLREMFGLY 1485
D P A++ + + GL+
Sbjct: 129 DLPNAMNAAEITDKLGLH 146
>ref|NP_031502.1| ADP-ribosylation factor 1 [Mus musculus].
Length = 181
Score = 94.7 bits (234), Expect = 2e-19
Identities = 46/138 (33%), Positives = 84/138 (60%), Gaps = 1/138 (0%)
Frame = +1
Query: 1075 FLGLY-KKTGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAGMTFTTFDL 1251
F GL+ KK +++ +GLD AGKTT+L+ LK + +PT+ E + ++FT +D+
Sbjct: 9 FKGLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDV 68
Query: 1252 GGHVQARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETVANVPILILGNKI 1431
GG + R +W++Y G++F+VD D ER+ E++EEL ++ ++ + + +L+ NK
Sbjct: 69 GGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQ 128
Query: 1432 DRPEAISEERLREMFGLY 1485
D P A++ + + GL+
Sbjct: 129 DLPNAMNAAEITDKLGLH 146
>ref|NP_109656.1| E3 ubiquitin-protein ligase TRIM23 [Mus musculus].
Length = 554
Score = 94.4 bits (233), Expect = 3e-19
Identities = 54/171 (31%), Positives = 87/171 (50%)
Frame = +1
Query: 1102 KLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAGMTFTTFDLGGHVQARRVW 1281
++V LGLD AGKTT+L LK D Q +PT+ E + + FT +D+GG + R +W
Sbjct: 386 RVVTLGLDGAGKTTILFKLKQDEFMQPIPTIGFNVETVEYKNLKFTIWDVGGKHKLRPLW 445
Query: 1282 KNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETVANVPILILGNKIDRPEAISEER 1461
K+Y +VF+VD + +R+ E+ EL L+T++ + + +LI NK D A+S E
Sbjct: 446 KHYYLNTQAVVFVVDSSHRDRISEAHSELAKLLTEKELRDALLLIFANKQDVAGALSVEE 505
Query: 1462 LREMFGLYGQTTGKGSVSLKELNARPLEVFMCSVLKRQGYGEGFRWMAQYI 1614
+ E+ L+ G R + C G EG W+++ +
Sbjct: 506 ITELLSLHKLCCG-----------RSWYIQGCDARSGMGLYEGLDWLSRQL 545
>ref|NP_031504.1| ADP-ribosylation factor 3 [Mus musculus].
Length = 181
Score = 94.0 bits (232), Expect = 4e-19
Identities = 53/186 (28%), Positives = 97/186 (52%)
Frame = +1
Query: 1057 FSSVLQFLGLYKKTGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAGMTF 1236
F ++L+ L + KK +++ +GLD AGKTT+L+ LK + +PT+ E + ++F
Sbjct: 5 FGNLLKSL-IGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISF 63
Query: 1237 TTFDLGGHVQARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETVANVPILI 1416
T +D+GG + R +W++Y G++F+VD D ER+ E++EEL ++ ++ + + +L+
Sbjct: 64 TVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLV 123
Query: 1417 LGNKIDRPEAISEERLREMFGLYGQTTGKGSVSLKELNARPLEVFMCSVLKRQGYGEGFR 1596
NK D P A++ + + GL+ L R + G EG
Sbjct: 124 FANKQDLPNAMNAAEITDKLGLH------------SLRHRNWYIQATCATSGDGLYEGLD 171
Query: 1597 WMAQYI 1614
W+A +
Sbjct: 172 WLANQL 177
>ref|NP_082119.1| ADP-ribosylation factor-like protein 14 [Mus musculus].
Length = 192
Score = 93.2 bits (230), Expect = 7e-19
Identities = 55/176 (31%), Positives = 96/176 (54%), Gaps = 2/176 (1%)
Frame = +1
Query: 1093 KTGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTI-AGMTFTTFDLGGHVQA 1269
K ++ LGLD+AGK+TLL+ LK +PT+ E + + + +T T +D+GG +
Sbjct: 12 KQAHILLLGLDSAGKSTLLYRLKFAETLSTIPTIGFNVEMVQLQSSLTLTVWDVGGQEKM 71
Query: 1270 RRVWKNYLPAINGIVFLVDCAD-HERLLESKEELDSLMTDETVANVPILILGNKIDRPEA 1446
R VW Y G++++VDC++ +RL +S++E ++ +E + N P++IL NK D P A
Sbjct: 72 RTVWDCYCENAQGLMYVVDCSEGKKRLEDSRKEFKHILKNEHIKNTPVVILANKQDLPGA 131
Query: 1447 ISEERLREMFGLYGQTTGKGSVSLKELNARPLEVFMCSVLKRQGYGEGFRWMAQYI 1614
+S E + MF + K + R V C + +G +GFR + +++
Sbjct: 132 LSAEDITRMFKV-----------KKLCSNRNWYVQPCCAVTGEGLDDGFRKLTEFL 176
Database: RefSeq44_MP.fasta
Posted date: Nov 15, 2010 4:36 PM
Number of letters in database: 15,452,059
Number of sequences in database: 29,866
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 29866
Number of Hits to DB: 62,524,641
Number of extensions: 1629279
Number of successful extensions: 7019
Number of sequences better than 1.0e-05: 35
Number of HSP's gapped: 6952
Number of HSP's successfully gapped: 35
Length of query: 662
Length of database: 15,452,059
Length adjustment: 108
Effective length of query: 554
Effective length of database: 12,226,531
Effective search space: 6773498174
Effective search space used: 6773498174
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqSP_Rel44
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20070806C-007648
(1988 letters)
Database: RefSeq44_SP.fasta
20,576 sequences; 9,542,844 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001008689.1| GTP-binding protein SAR1b [Sus scrofa]. 402 e-112
Alignment gi|NP_001026956.1| GTP-binding protein SAR1a [Sus scrofa]. 372 e-103
Alignment gi|XP_003133105.1| PREDICTED: GTP-binding protein SAR1a-like [S... 148 8e-36
Alignment gi|NP_001072145.1| ADP-ribosylation factor 6 [Sus scrofa]. 98 1e-20
Alignment gi|XP_003131009.1| PREDICTED: ADP-ribosylation factor-like prot... 98 2e-20
Alignment gi|XP_003132562.1| PREDICTED: ADP-ribosylation factor-like prot... 96 5e-20
Alignment gi|XP_003122597.1| PREDICTED: ADP-ribosylation factor-like prot... 96 6e-20
Alignment gi|NP_001153899.1| ADP-ribosylation factor 1 [Sus scrofa]. 95 1e-19
Alignment gi|XP_003132391.1| PREDICTED: ADP-ribosylation factor-like prot... 95 1e-19
Alignment gi|XP_003123656.1| PREDICTED: ADP-ribosylation factor 1-like [S... 95 1e-19
>ref|NP_001008689.1| GTP-binding protein SAR1b [Sus scrofa].
Length = 198
Score = 402 bits (1032), Expect = e-112
Identities = 198/198 (100%), Positives = 198/198 (100%)
Frame = +1
Query: 1024 MSFIFDWIYSGFSSVLQFLGLYKKTGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPT 1203
MSFIFDWIYSGFSSVLQFLGLYKKTGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPT
Sbjct: 1 MSFIFDWIYSGFSSVLQFLGLYKKTGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPT 60
Query: 1204 SEELTIAGMTFTTFDLGGHVQARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMT 1383
SEELTIAGMTFTTFDLGGHVQARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMT
Sbjct: 61 SEELTIAGMTFTTFDLGGHVQARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMT 120
Query: 1384 DETVANVPILILGNKIDRPEAISEERLREMFGLYGQTTGKGSVSLKELNARPLEVFMCSV 1563
DETVANVPILILGNKIDRPEAISEERLREMFGLYGQTTGKGSVSLKELNARPLEVFMCSV
Sbjct: 121 DETVANVPILILGNKIDRPEAISEERLREMFGLYGQTTGKGSVSLKELNARPLEVFMCSV 180
Query: 1564 LKRQGYGEGFRWMAQYID 1617
LKRQGYGEGFRWMAQYID
Sbjct: 181 LKRQGYGEGFRWMAQYID 198
>ref|NP_001026956.1| GTP-binding protein SAR1a [Sus scrofa].
Length = 198
Score = 372 bits (956), Expect = e-103
Identities = 178/198 (89%), Positives = 194/198 (97%)
Frame = +1
Query: 1024 MSFIFDWIYSGFSSVLQFLGLYKKTGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPT 1203
MSFIF+WIY+GFSSVLQFLGLYKK+GKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPT
Sbjct: 1 MSFIFEWIYNGFSSVLQFLGLYKKSGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPT 60
Query: 1204 SEELTIAGMTFTTFDLGGHVQARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMT 1383
SEELTIAGMTFTTFDLGGH QARRVWKNYLPAINGIVFLVDCADH RL+ESK EL++LMT
Sbjct: 61 SEELTIAGMTFTTFDLGGHEQARRVWKNYLPAINGIVFLVDCADHPRLMESKVELNALMT 120
Query: 1384 DETVANVPILILGNKIDRPEAISEERLREMFGLYGQTTGKGSVSLKELNARPLEVFMCSV 1563
DET++NVPILILGNKIDR +AISEE+LRE+FGLYGQTTGKG+V+LKELNARP+EVFMCSV
Sbjct: 121 DETISNVPILILGNKIDRTDAISEEKLREIFGLYGQTTGKGNVTLKELNARPMEVFMCSV 180
Query: 1564 LKRQGYGEGFRWMAQYID 1617
LKRQGYGEGFRW++QYID
Sbjct: 181 LKRQGYGEGFRWLSQYID 198
>ref|XP_003133105.1| PREDICTED: GTP-binding protein SAR1a-like [Sus scrofa].
Length = 80
Score = 148 bits (374), Expect = 8e-36
Identities = 69/80 (86%), Positives = 78/80 (97%)
Frame = +1
Query: 1378 MTDETVANVPILILGNKIDRPEAISEERLREMFGLYGQTTGKGSVSLKELNARPLEVFMC 1557
MTDET+ NVPILILGNKIDR +AISEE+LRE+FGLYGQTTGKG+V+LKELNARP+EVFMC
Sbjct: 1 MTDETIFNVPILILGNKIDRTDAISEEKLREIFGLYGQTTGKGNVTLKELNARPMEVFMC 60
Query: 1558 SVLKRQGYGEGFRWMAQYID 1617
SVLKRQGYGEGFRW++QYID
Sbjct: 61 SVLKRQGYGEGFRWLSQYID 80
>ref|NP_001072145.1| ADP-ribosylation factor 6 [Sus scrofa].
Length = 175
Score = 98.2 bits (243), Expect = 1e-20
Identities = 47/130 (36%), Positives = 79/130 (60%)
Frame = +1
Query: 1093 KTGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAGMTFTTFDLGGHVQAR 1272
K +++ LGLD AGKTT+L+ LK + +PT+ E +T + F +D+GG + R
Sbjct: 12 KEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGQDKIR 71
Query: 1273 RVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETVANVPILILGNKIDRPEAIS 1452
+W++Y G++F+VDCAD +R+ E+++EL ++ D + + ILI NK D P+A+
Sbjct: 72 PLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMK 131
Query: 1453 EERLREMFGL 1482
++E GL
Sbjct: 132 PHEIQEKLGL 141
>ref|XP_003131009.1| PREDICTED: ADP-ribosylation factor-like protein 11-like [Sus scrofa].
Length = 182
Score = 97.8 bits (242), Expect = 2e-20
Identities = 52/135 (38%), Positives = 86/135 (63%), Gaps = 1/135 (0%)
Frame = +1
Query: 1087 YKKTGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAG-MTFTTFDLGGHV 1263
++ ++V +GLD+AGKTTLL+ LK +L + +PT+ E L G ++ T +D+GG
Sbjct: 9 HRAEAQVVMMGLDSAGKTTLLYRLKGYQLVETLPTVGFNVEPLEEPGHVSLTLWDVGGQS 68
Query: 1264 QARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETVANVPILILGNKIDRPE 1443
Q R WK++L + +V+++D D RL E+ EL ++ D +VA+VP+L+L NK + P+
Sbjct: 69 QLRASWKDHLEGTDILVYVLDSTDEARLPEAVAELREVLDDPSVASVPLLVLANKQEVPQ 128
Query: 1444 AISEERLREMFGLYG 1488
A+S +R+ GL G
Sbjct: 129 ALSLPEIRDRLGLQG 143
>ref|XP_003132562.1| PREDICTED: ADP-ribosylation factor-like protein 14-like [Sus scrofa].
Length = 192
Score = 96.3 bits (238), Expect = 5e-20
Identities = 56/175 (32%), Positives = 96/175 (54%), Gaps = 1/175 (0%)
Frame = +1
Query: 1093 KTGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIA-GMTFTTFDLGGHVQA 1269
K +++ LGLD+AGK+TLL+ LK + + PT+ E + + G+ T +D+GG +
Sbjct: 12 KQARILLLGLDSAGKSTLLYKLKLAKDIETTPTIGFNVEMMELEKGLQLTVWDVGGQEKM 71
Query: 1270 RRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETVANVPILILGNKIDRPEAI 1449
R VW Y +G+V++VD +D +RL +S+ E + ++ +E + NVP+++L NK D P A+
Sbjct: 72 RTVWSLYCENTDGLVYVVDSSDTQRLEDSRREFEHILKNEHIKNVPVILLANKQDVPGAM 131
Query: 1450 SEERLREMFGLYGQTTGKGSVSLKELNARPLEVFMCSVLKRQGYGEGFRWMAQYI 1614
+ E + MF + K + R V C + G EGFR + ++
Sbjct: 132 NAEEITRMFKV-----------KKLCSDRNWYVQPCCAVTGDGLMEGFRKLTGFV 175
>ref|XP_003122597.1| PREDICTED: ADP-ribosylation factor-like protein 2-like [Sus scrofa].
Length = 184
Score = 95.9 bits (237), Expect = 6e-20
Identities = 49/143 (34%), Positives = 81/143 (56%)
Frame = +1
Query: 1054 GFSSVLQFLGLYKKTGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAGMT 1233
G ++L+ + ++ +L+ LGLDNAGKTT+L + + PTL + L G
Sbjct: 2 GLLTILKKMKQKERELRLLMLGLDNAGKTTILKKFNGEDIDTISPTLGFNIKTLEHRGFK 61
Query: 1234 FTTFDLGGHVQARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETVANVPIL 1413
+D+GG R W+NY + +G++++VD AD +R+ + + EL SL+ +E +A +L
Sbjct: 62 LNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLL 121
Query: 1414 ILGNKIDRPEAISEERLREMFGL 1482
I NK D P A+S + +RE L
Sbjct: 122 IFANKQDLPGALSSKAIREALEL 144
>ref|NP_001153899.1| ADP-ribosylation factor 1 [Sus scrofa].
Length = 181
Score = 94.7 bits (234), Expect = 1e-19
Identities = 46/138 (33%), Positives = 84/138 (60%), Gaps = 1/138 (0%)
Frame = +1
Query: 1075 FLGLY-KKTGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAGMTFTTFDL 1251
F GL+ KK +++ +GLD AGKTT+L+ LK + +PT+ E + ++FT +D+
Sbjct: 9 FKGLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDV 68
Query: 1252 GGHVQARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETVANVPILILGNKI 1431
GG + R +W++Y G++F+VD D ER+ E++EEL ++ ++ + + +L+ NK
Sbjct: 69 GGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQ 128
Query: 1432 DRPEAISEERLREMFGLY 1485
D P A++ + + GL+
Sbjct: 129 DLPNAMNAAEITDKLGLH 146
>ref|XP_003132391.1| PREDICTED: ADP-ribosylation factor-like protein 8B-like [Sus scrofa].
Length = 244
Score = 94.7 bits (234), Expect = 1e-19
Identities = 56/187 (29%), Positives = 99/187 (52%), Gaps = 1/187 (0%)
Frame = +1
Query: 925 GPRQPSRLTPECRGPTPRKESRSLQSQTL*DLAMSFIFDWIYSGFSSVLQFLGLYKKTGK 1104
GPR P+R+ P SL + + L +S + DW S F +K+ +
Sbjct: 32 GPR-PARVEFVAAAAHPLAHQSSLPTAIMLAL-ISRLLDWFRSLF---------WKEEME 80
Query: 1105 LVFLGLDNAGKTTLLHMLKDDRLGQH-VPTLHPTSEELTIAGMTFTTFDLGGHVQARRVW 1281
L +GL +GKTT ++++ + + +PT+ ++T +T +D+GG + R +W
Sbjct: 81 LTLVGLQYSGKTTFVNVIASGQFSEDMIPTVGFNMRKVTKGNVTIKIWDIGGQPRFRSMW 140
Query: 1282 KNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETVANVPILILGNKIDRPEAISEER 1461
+ Y +N IV+++D AD E++ S+ EL +L+ + +P+L+LGNK D P A+ E++
Sbjct: 141 ERYCRGVNAIVYMIDAADREKIEASRNELHNLLDKPQLQGIPVLVLGNKRDLPNALDEKQ 200
Query: 1462 LREMFGL 1482
L E L
Sbjct: 201 LIEKMNL 207
>ref|XP_003123656.1| PREDICTED: ADP-ribosylation factor 1-like [Sus scrofa].
Length = 181
Score = 94.7 bits (234), Expect = 1e-19
Identities = 46/138 (33%), Positives = 84/138 (60%), Gaps = 1/138 (0%)
Frame = +1
Query: 1075 FLGLY-KKTGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAGMTFTTFDL 1251
F GL+ KK +++ +GLD AGKTT+L+ LK + +PT+ E + ++FT +D+
Sbjct: 9 FKGLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDV 68
Query: 1252 GGHVQARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETVANVPILILGNKI 1431
GG + R +W++Y G++F+VD D ER+ E++EEL ++ ++ + + +L+ NK
Sbjct: 69 GGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQ 128
Query: 1432 DRPEAISEERLREMFGLY 1485
D P A++ + + GL+
Sbjct: 129 DLPNAMNAAEITDKLGLH 146
Database: RefSeq44_SP.fasta
Posted date: Nov 15, 2010 4:36 PM
Number of letters in database: 9,542,844
Number of sequences in database: 20,576
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 20576
Number of Hits to DB: 39,244,327
Number of extensions: 1044772
Number of successful extensions: 4917
Number of sequences better than 1.0e-05: 24
Number of HSP's gapped: 4872
Number of HSP's successfully gapped: 24
Length of query: 662
Length of database: 9,542,844
Length adjustment: 104
Effective length of query: 558
Effective length of database: 7,402,940
Effective search space: 4130840520
Effective search space used: 4130840520
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)