Search to RefSeqBP_Rel44
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20070806C-008028
(1626 letters)
Database: RefSeq44_BP.fasta
33,615 sequences; 18,071,151 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001030468.1| ras-related protein Rab-11B [Bos taurus]. 434 e-121
Alignment gi|NP_001033251.1| ras-related protein Rab-11A [Bos taurus]. 385 e-107
Alignment gi|NP_001017936.1| ras-related protein Rab-25 [Bos taurus]. 249 5e-66
Alignment gi|NP_001179594.1| ras-related protein Rab-2B [Bos taurus]. 192 7e-49
Alignment gi|XP_002690779.1| PREDICTED: RAB2B protein-like [Bos taurus]. 192 7e-49
Alignment gi|NP_001124226.1| ras-related protein Rab-14 [Bos taurus]. 185 1e-46
Alignment gi|NP_001069701.1| ras-related protein Rab-1B [Bos taurus]. 183 3e-46
Alignment gi|NP_001068822.1| ras-related protein Rab-2A [Bos taurus]. 181 2e-45
Alignment gi|NP_001121979.1| RAB4B, member RAS oncogene family [Bos tauru... 178 1e-44
Alignment gi|NP_001069785.1| ras-related protein Rab-8B [Bos taurus]. 177 2e-44
>ref|NP_001030468.1| ras-related protein Rab-11B [Bos taurus].
Length = 218
Score = 434 bits (1115), Expect = e-121
Identities = 218/218 (100%), Positives = 218/218 (100%)
Frame = +1
Query: 397 MGTRDDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTI 576
MGTRDDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTI
Sbjct: 1 MGTRDDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTI 60
Query: 577 KAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIM 756
KAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIM
Sbjct: 61 KAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIM 120
Query: 757 LVGNKSDLRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEIYRIVSQKQ 936
LVGNKSDLRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEIYRIVSQKQ
Sbjct: 121 LVGNKSDLRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEIYRIVSQKQ 180
Query: 937 IADRAAHDESPGNNVVDISVPPTTDGQKPNKLQCCQNL 1050
IADRAAHDESPGNNVVDISVPPTTDGQKPNKLQCCQNL
Sbjct: 181 IADRAAHDESPGNNVVDISVPPTTDGQKPNKLQCCQNL 218
>ref|NP_001033251.1| ras-related protein Rab-11A [Bos taurus].
Length = 216
Score = 385 bits (989), Expect = e-107
Identities = 198/218 (90%), Positives = 205/218 (94%)
Frame = +1
Query: 397 MGTRDDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTI 576
MGTRDDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTI
Sbjct: 1 MGTRDDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTI 60
Query: 577 KAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIM 756
KAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIM
Sbjct: 61 KAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIM 120
Query: 757 LVGNKSDLRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEIYRIVSQKQ 936
LVGNKSDLRHLRAVPTDEARAFAEKN LSFIETSALD TNVE AF+ ILTEIYRIVSQKQ
Sbjct: 121 LVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDYTNVEAAFQTILTEIYRIVSQKQ 180
Query: 937 IADRAAHDESPGNNVVDISVPPTTDGQKPNKLQCCQNL 1050
++DR +D SP NNVV I VPPTT+ KP K+QCCQN+
Sbjct: 181 MSDRRENDMSPSNNVVPIHVPPTTE-NKP-KVQCCQNI 216
>ref|NP_001017936.1| ras-related protein Rab-25 [Bos taurus].
Length = 213
Score = 249 bits (636), Expect = 5e-66
Identities = 132/220 (60%), Positives = 164/220 (74%), Gaps = 2/220 (0%)
Frame = +1
Query: 397 MGTR-DDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKT 573
MG R +++Y+++FKVVLIG+SGVGK+NLLSRFTRNEF+ +S++TIGVEF+TR++ +
Sbjct: 1 MGNRAEEDYNFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAA 60
Query: 574 IKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVI 753
IKAQIWDTAG ERYRAITSAYYRGAVGALLV+D+ KH TY VERWLKEL DHA++ IV+
Sbjct: 61 IKAQIWDTAGLERYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVV 120
Query: 754 MLVGNKSDLRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEIYRIVSQK 933
MLVGNKSDL R VPT+EAR FAE N L F+ETSALDSTNVE AF+ +L EI+ VS++
Sbjct: 121 MLVGNKSDLSQSREVPTEEARMFAENNGLLFLETSALDSTNVELAFETVLKEIFAKVSKQ 180
Query: 934 QIADRAAHDESPGNNVVDISVPPTTDGQKP-NKLQCCQNL 1050
+ + N V + P P K CC +L
Sbjct: 181 R-------QNNARTNAVTLGSGPAGQELGPGEKRACCISL 213
>ref|NP_001179594.1| ras-related protein Rab-2B [Bos taurus].
Length = 216
Score = 192 bits (488), Expect = 7e-49
Identities = 96/171 (56%), Positives = 120/171 (70%)
Frame = +1
Query: 418 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDT 597
Y YLFK ++IGD+GVGKS LL +FT F TIGVEF R + +DGK IK QIWDT
Sbjct: 3 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDT 62
Query: 598 AGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSD 777
AGQE +R+IT +YYRGA GALLVYDI + T+ ++ WL++ R H+ SN+VIML+GNKSD
Sbjct: 63 AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSD 122
Query: 778 LRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEIYRIVSQ 930
L R V +E AFA ++ L F+ETSA + NVEEAF N EIYR + Q
Sbjct: 123 LESRRDVKREEGEAFAREHGLIFMETSAKTACNVEEAFINTAKEIYRKIQQ 173
>ref|XP_002690779.1| PREDICTED: RAB2B protein-like [Bos taurus].
Length = 216
Score = 192 bits (488), Expect = 7e-49
Identities = 96/171 (56%), Positives = 120/171 (70%)
Frame = +1
Query: 418 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDT 597
Y YLFK ++IGD+GVGKS LL +FT F TIGVEF R + +DGK IK QIWDT
Sbjct: 3 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDT 62
Query: 598 AGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSD 777
AGQE +R+IT +YYRGA GALLVYDI + T+ ++ WL++ R H+ SN+VIML+GNKSD
Sbjct: 63 AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSD 122
Query: 778 LRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEIYRIVSQ 930
L R V +E AFA ++ L F+ETSA + NVEEAF N EIYR + Q
Sbjct: 123 LESRRDVKREEGEAFAREHGLIFMETSAKTACNVEEAFINTAKEIYRKIQQ 173
>ref|NP_001124226.1| ras-related protein Rab-14 [Bos taurus].
Length = 215
Score = 185 bits (469), Expect = 1e-46
Identities = 93/186 (50%), Positives = 123/186 (66%)
Frame = +1
Query: 397 MGTRDDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTI 576
M T Y Y+FK ++IGD GVGKS LL +FT +F + TIGVEF TR I+V G+ I
Sbjct: 1 MATAPYNYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKI 60
Query: 577 KAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIM 756
K QIWDTAGQER+RA+T +YYRGA GAL+VYDI + TY ++ WL + R+ + N VI+
Sbjct: 61 KLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVII 120
Query: 757 LVGNKSDLRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEIYRIVSQKQ 936
L+GNK+DL R V +EA+ FAE+N L F+E SA NVE+AF +IY+ +
Sbjct: 121 LIGNKADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAAKKIYQNIQDGS 180
Query: 937 IADRAA 954
+ AA
Sbjct: 181 LDLNAA 186
>ref|NP_001069701.1| ras-related protein Rab-1B [Bos taurus].
Length = 201
Score = 183 bits (465), Expect = 3e-46
Identities = 91/166 (54%), Positives = 121/166 (72%)
Frame = +1
Query: 415 EYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWD 594
EYDYLFK++LIGDSGVGKS LL RF + + STIGV+F R+I++DGKTIK QIWD
Sbjct: 4 EYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWD 63
Query: 595 TAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKS 774
TAGQER+R ITS+YYRGA G ++VYD+ +Y NV++WL+E+ +A N+ +LVGNKS
Sbjct: 64 TAGQERFRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYASENVNKLLVGNKS 123
Query: 775 DLRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEI 912
DL + V A+ FA+ + F+ETSA ++TNVE+AF + EI
Sbjct: 124 DLTTKKVVDNTTAKEFADSLGIPFLETSAKNATNVEQAFMTMAAEI 169
>ref|NP_001068822.1| ras-related protein Rab-2A [Bos taurus].
Length = 189
Score = 181 bits (459), Expect = 2e-45
Identities = 90/157 (57%), Positives = 114/157 (72%)
Frame = +1
Query: 418 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDT 597
Y YLFK ++IGD+GVGKS LL +FT F TIGVEF R I +DGK IK QIWDT
Sbjct: 3 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDT 62
Query: 598 AGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSD 777
AGQE +R+IT +YYRGA GALLVYDI + T+ ++ WL++ R H++SN+VIML+GNKSD
Sbjct: 63 AGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTTWLEDARQHSNSNMVIMLIGNKSD 122
Query: 778 LRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEA 888
L R V +E AFA ++ L F+ETSA ++NVEEA
Sbjct: 123 LESRREVKKEEGEAFAREHGLIFMETSAKTASNVEEA 159
>ref|NP_001121979.1| RAB4B, member RAS oncogene family [Bos taurus].
Length = 213
Score = 178 bits (452), Expect = 1e-44
Identities = 89/160 (55%), Positives = 112/160 (70%)
Frame = +1
Query: 412 DEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIW 591
+ YD+LFK ++IG +G GKS LL +F N+F +S TIGVEF +R + V GKT+K QIW
Sbjct: 3 ETYDFLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIW 62
Query: 592 DTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNK 771
DTAGQER+R++T +YYRGA GALLVYDI TY ++ WL + R A NIV++L GNK
Sbjct: 63 DTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNSLAAWLTDARTLASPNIVVILCGNK 122
Query: 772 SDLRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAF 891
DL R V EA FA++N L F+ETSAL NVEEAF
Sbjct: 123 KDLDPEREVTFLEASRFAQENELMFLETSALTGENVEEAF 162
>ref|NP_001069785.1| ras-related protein Rab-8B [Bos taurus].
Length = 207
Score = 177 bits (450), Expect = 2e-44
Identities = 84/172 (48%), Positives = 120/172 (69%)
Frame = +1
Query: 418 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDT 597
YDYLFK++LIGDSGVGK+ LL RF+ + FN STIG++F R+I++DGK IK QIWDT
Sbjct: 5 YDYLFKLLLIGDSGVGKTCLLFRFSEDAFNTTFISTIGIDFKIRTIELDGKKIKLQIWDT 64
Query: 598 AGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSD 777
AGQER+R IT+AYYRGA+G +LVYDI +++N++ W++ + +HA S++ M++GNK D
Sbjct: 65 AGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEEHASSDVERMILGNKCD 124
Query: 778 LRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEIYRIVSQK 933
+ R V + A + F+E SA S NVEEAF + +I +++K
Sbjct: 125 MNDKRQVSKERGEKLAIDYGIKFLEASAKSSMNVEEAFFTLARDIMTKLNRK 176
Database: RefSeq44_BP.fasta
Posted date: Nov 15, 2010 4:36 PM
Number of letters in database: 18,071,151
Number of sequences in database: 33,615
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33615
Number of Hits to DB: 70,336,648
Number of extensions: 2254413
Number of successful extensions: 11624
Number of sequences better than 1.0e-05: 162
Number of HSP's gapped: 11447
Number of HSP's successfully gapped: 163
Length of query: 542
Length of database: 18,071,151
Length adjustment: 107
Effective length of query: 435
Effective length of database: 14,474,346
Effective search space: 6296340510
Effective search space used: 6296340510
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqCP_Rel44
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20070806C-008028
(1626 letters)
Database: RefSeq44_CP.fasta
33,359 sequences; 18,921,627 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_854399.1| PREDICTED: similar to RAB11B, member RAS oncoge... 409 e-114
Alignment gi|NP_001003276.1| ras-related protein Rab-11A [Canis lupus fam... 387 e-107
Alignment gi|XP_855589.1| PREDICTED: rab11 GTP-binding protein [Canis fam... 387 e-107
Alignment gi|XP_547540.2| PREDICTED: similar to Ras-related protein Rab-2... 237 2e-62
Alignment gi|XP_532625.2| PREDICTED: similar to RAB2B protein isoform 1 [... 195 1e-49
Alignment gi|NP_001003318.1| ras-related protein Rab-2A [Canis lupus fami... 190 3e-48
Alignment gi|XP_538000.2| PREDICTED: similar to RAB2, member RAS oncogene... 187 3e-47
Alignment gi|XP_532048.2| PREDICTED: similar to RAB14, member RAS oncogen... 185 1e-46
Alignment gi|XP_865976.1| PREDICTED: similar to RAB1B, member RAS oncogen... 184 2e-46
Alignment gi|XP_852545.1| PREDICTED: similar to RAB1B, member RAS oncogen... 184 2e-46
>ref|XP_854399.1| PREDICTED: similar to RAB11B, member RAS oncogene family [Canis
familiaris].
Length = 410
Score = 409 bits (1052), Expect = e-114
Identities = 206/209 (98%), Positives = 208/209 (99%)
Frame = +1
Query: 424 YLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAG 603
YL ++VLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAG
Sbjct: 202 YLLRLVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAG 261
Query: 604 QERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLR 783
QERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLR
Sbjct: 262 QERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLR 321
Query: 784 HLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEIYRIVSQKQIADRAAHDE 963
HLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEIYRIVSQKQIADRAAHDE
Sbjct: 322 HLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEIYRIVSQKQIADRAAHDE 381
Query: 964 SPGNNVVDISVPPTTDGQKPNKLQCCQNL 1050
SPGNNVVDISVPPTTDGQKPNKLQCCQNL
Sbjct: 382 SPGNNVVDISVPPTTDGQKPNKLQCCQNL 410
>ref|NP_001003276.1| ras-related protein Rab-11A [Canis lupus familiaris].
Length = 216
Score = 387 bits (995), Expect = e-107
Identities = 199/218 (91%), Positives = 206/218 (94%)
Frame = +1
Query: 397 MGTRDDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTI 576
MGTRDDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTI
Sbjct: 1 MGTRDDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTI 60
Query: 577 KAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIM 756
KAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIM
Sbjct: 61 KAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIM 120
Query: 757 LVGNKSDLRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEIYRIVSQKQ 936
LVGNKSDLRHLRAVPTDEARAFAEKN LSFIETSALDSTNVE AF+ ILTEIYRIVSQKQ
Sbjct: 121 LVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIYRIVSQKQ 180
Query: 937 IADRAAHDESPGNNVVDISVPPTTDGQKPNKLQCCQNL 1050
++DR +D SP NNVV I VPPTT+ KP K+QCCQN+
Sbjct: 181 MSDRRENDMSPSNNVVPIHVPPTTE-NKP-KVQCCQNI 216
>ref|XP_855589.1| PREDICTED: rab11 GTP-binding protein [Canis familiaris].
Length = 216
Score = 387 bits (995), Expect = e-107
Identities = 199/218 (91%), Positives = 206/218 (94%)
Frame = +1
Query: 397 MGTRDDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTI 576
MGTRDDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTI
Sbjct: 1 MGTRDDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTI 60
Query: 577 KAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIM 756
KAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIM
Sbjct: 61 KAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIM 120
Query: 757 LVGNKSDLRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEIYRIVSQKQ 936
LVGNKSDLRHLRAVPTDEARAFAEKN LSFIETSALDSTNVE AF+ ILTEIYRIVSQKQ
Sbjct: 121 LVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIYRIVSQKQ 180
Query: 937 IADRAAHDESPGNNVVDISVPPTTDGQKPNKLQCCQNL 1050
++DR +D SP NNVV I VPPTT+ KP K+QCCQN+
Sbjct: 181 MSDRRENDMSPSNNVVPIHVPPTTE-NKP-KVQCCQNI 216
>ref|XP_547540.2| PREDICTED: similar to Ras-related protein Rab-25 (CATX-8) [Canis
familiaris].
Length = 213
Score = 237 bits (605), Expect = 2e-62
Identities = 128/208 (61%), Positives = 155/208 (74%), Gaps = 3/208 (1%)
Frame = +1
Query: 436 VVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERY 615
VVLIG+SGVGK+NLLSRFTRNEF+ +S++TIGVEF+TR++ + IKAQIWDTAG ERY
Sbjct: 15 VVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAIKAQIWDTAGLERY 74
Query: 616 RAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRA 795
RAITSAYYRGAVGALLV+D+ KH TY VERWLKEL DHA++ IV+MLVGNKSDL R
Sbjct: 75 RAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNKSDLHQARE 134
Query: 796 VPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEIYRIVSQKQIADRAAHDESPGN 975
VPT+EAR FAE N L F+ETSALDSTNVE AF+ +L EI+ VS+++ S
Sbjct: 135 VPTEEARMFAENNGLLFLETSALDSTNVELAFETVLKEIFTKVSKQR-------QNSTRT 187
Query: 976 NVVDISVPPTTDGQKP---NKLQCCQNL 1050
N I++ GQ+P K CC +L
Sbjct: 188 NA--IALGSAQAGQEPGAGQKRACCISL 213
>ref|XP_532625.2| PREDICTED: similar to RAB2B protein isoform 1 [Canis familiaris].
Length = 216
Score = 195 bits (495), Expect = 1e-49
Identities = 105/217 (48%), Positives = 137/217 (63%), Gaps = 9/217 (4%)
Frame = +1
Query: 418 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDT 597
Y YLFK ++IGD+GVGKS LL +FT F TIGVEF R + +DGK IK QIWDT
Sbjct: 3 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDT 62
Query: 598 AGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSD 777
AGQE +R+IT +YYRGA GALLVYDI + T+ ++ WL++ R H+ SN+VIML+GNKSD
Sbjct: 63 AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSD 122
Query: 778 LRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEIYRIVSQKQIADRAAH 957
L R V +E AFA ++ L F+ETSA + NVEEAF N EIYR + Q H
Sbjct: 123 LESRRDVKREEGEAFAREHGLIFMETSAKTACNVEEAFINTAKEIYRKIQQGLF---DVH 179
Query: 958 DESPGNNV-----VDISVPPTTDGQKPNKL----QCC 1041
+E+ G + + SV P+ + N++ CC
Sbjct: 180 NEANGIKIGPQQCISASVGPSASQRSSNEIGSNSGCC 216
>ref|NP_001003318.1| ras-related protein Rab-2A [Canis lupus familiaris].
Length = 212
Score = 190 bits (483), Expect = 3e-48
Identities = 95/171 (55%), Positives = 121/171 (70%)
Frame = +1
Query: 418 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDT 597
Y YLFK ++IGD+GVGKS LL +FT F TIGVEF R I +DGK IK QIWDT
Sbjct: 3 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDT 62
Query: 598 AGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSD 777
AGQE +R+IT +YYRGA GALLVYDI + T+ ++ WL++ R H++SN+VIML+GNKSD
Sbjct: 63 AGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTTWLEDARQHSNSNMVIMLIGNKSD 122
Query: 778 LRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEIYRIVSQ 930
L R V +E AFA ++ L F+ETSA ++NVEEAF N EIY + +
Sbjct: 123 LESRREVKKEEGEAFAREHGLIFMETSAKTASNVEEAFINTAKEIYEKIQE 173
>ref|XP_538000.2| PREDICTED: similar to RAB2, member RAS oncogene family [Canis
familiaris].
Length = 271
Score = 187 bits (475), Expect = 3e-47
Identities = 94/171 (54%), Positives = 121/171 (70%)
Frame = +1
Query: 418 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDT 597
Y YLFK ++IGD+GVGKS LL +FT F TIGVEF R I +DGK IK QIWDT
Sbjct: 61 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKRIKLQIWDT 120
Query: 598 AGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSD 777
AGQE +R+IT +YYRGA GALLVYDI + T+ ++ WL++ R +++SN+VIML+GNKSD
Sbjct: 121 AGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTTWLEDARHYSNSNMVIMLIGNKSD 180
Query: 778 LRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEIYRIVSQ 930
L R V +E AFA ++ L F+ETSA ++NVEEAF N EIY + +
Sbjct: 181 LESRREVNKEEGEAFAREHGLIFMETSAKTASNVEEAFINTAKEIYEKIQE 231
>ref|XP_532048.2| PREDICTED: similar to RAB14, member RAS oncogene family isoform 1
[Canis familiaris].
Length = 215
Score = 185 bits (469), Expect = 1e-46
Identities = 93/186 (50%), Positives = 123/186 (66%)
Frame = +1
Query: 397 MGTRDDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTI 576
M T Y Y+FK ++IGD GVGKS LL +FT +F + TIGVEF TR I+V G+ I
Sbjct: 1 MATAPYNYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKI 60
Query: 577 KAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIM 756
K QIWDTAGQER+RA+T +YYRGA GAL+VYDI + TY ++ WL + R+ + N VI+
Sbjct: 61 KLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVII 120
Query: 757 LVGNKSDLRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEIYRIVSQKQ 936
L+GNK+DL R V +EA+ FAE+N L F+E SA NVE+AF +IY+ +
Sbjct: 121 LIGNKADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAAKKIYQNIQDGS 180
Query: 937 IADRAA 954
+ AA
Sbjct: 181 LDLNAA 186
>ref|XP_865976.1| PREDICTED: similar to RAB1B, member RAS oncogene family isoform 5
[Canis familiaris].
Length = 201
Score = 184 bits (467), Expect = 2e-46
Identities = 97/200 (48%), Positives = 131/200 (65%)
Frame = +1
Query: 415 EYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWD 594
EYDYLFK++LIGDSGVGKS LL RF + + STIGV+F R+I++DGKTIK QIWD
Sbjct: 4 EYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWD 63
Query: 595 TAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKS 774
TAGQER+R ITS+YYRGA G ++VYD+ +Y NV++WL+E+ +A N+ +LVGNKS
Sbjct: 64 TAGQERFRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYASENVNKLLVGNKS 123
Query: 775 DLRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEIYRIVSQKQIADRAA 954
DL + V A+ FA+ + F+ETSA ++TNVE+AF + EI ++ A+
Sbjct: 124 DLTTKKVVDNTTAKEFADSLGIPFLETSAKNATNVEQAFMTMAAEI----KKRMGPGAAS 179
Query: 955 HDESPGNNVVDISVPPTTDG 1014
E P + V P G
Sbjct: 180 GGERPNLKIDSTPVKPAGGG 199
>ref|XP_852545.1| PREDICTED: similar to RAB1B, member RAS oncogene family isoform 1
[Canis familiaris].
Length = 201
Score = 184 bits (467), Expect = 2e-46
Identities = 97/200 (48%), Positives = 131/200 (65%)
Frame = +1
Query: 415 EYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWD 594
EYDYLFK++LIGDSGVGKS LL RF + + STIGV+F R+I++DGKTIK QIWD
Sbjct: 4 EYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWD 63
Query: 595 TAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKS 774
TAGQER+R ITS+YYRGA G ++VYD+ +Y NV++WL+E+ +A N+ +LVGNKS
Sbjct: 64 TAGQERFRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYASENVNKLLVGNKS 123
Query: 775 DLRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEIYRIVSQKQIADRAA 954
DL + V A+ FA+ + F+ETSA ++TNVE+AF + EI ++ A+
Sbjct: 124 DLTTKKVVDNTTAKEFADSLGIPFLETSAKNATNVEQAFMTMAAEI----KKRMGPGAAS 179
Query: 955 HDESPGNNVVDISVPPTTDG 1014
E P + V P G
Sbjct: 180 GGERPNLKIDSTPVKPAGGG 199
Database: RefSeq44_CP.fasta
Posted date: Nov 15, 2010 4:36 PM
Number of letters in database: 18,921,627
Number of sequences in database: 33,359
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33359
Number of Hits to DB: 71,930,363
Number of extensions: 2273307
Number of successful extensions: 11433
Number of sequences better than 1.0e-05: 159
Number of HSP's gapped: 11288
Number of HSP's successfully gapped: 161
Length of query: 542
Length of database: 18,921,627
Length adjustment: 108
Effective length of query: 434
Effective length of database: 15,318,855
Effective search space: 6648383070
Effective search space used: 6648383070
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqHP_Rel44
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20070806C-008028
(1626 letters)
Database: RefSeq44_HP.fasta
33,950 sequences; 18,324,212 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_004209.2| ras-related protein Rab-11B [Homo sapiens]. 434 e-121
Alignment gi|NP_004654.1| ras-related protein Rab-11A [Homo sapiens]. 387 e-107
Alignment gi|NP_065120.2| ras-related protein Rab-25 [Homo sapiens]. 247 2e-65
Alignment gi|NP_116235.2| ras-related protein Rab-2B isoform 1 [Homo sapi... 192 8e-49
Alignment gi|NP_002856.1| ras-related protein Rab-2A [Homo sapiens]. 190 3e-48
Alignment gi|NP_057406.2| ras-related protein Rab-14 [Homo sapiens]. 185 1e-46
Alignment gi|NP_112243.1| ras-related protein Rab-1B [Homo sapiens]. 184 2e-46
Alignment gi|NP_004152.1| ras-related protein Rab-1A isoform 1 [Homo sapi... 181 2e-45
Alignment gi|NP_057614.1| ras-related protein Rab-8B [Homo sapiens]. 180 3e-45
Alignment gi|NP_940892.1| ras-related protein Rab-43 [Homo sapiens]. 180 3e-45
>ref|NP_004209.2| ras-related protein Rab-11B [Homo sapiens].
Length = 218
Score = 434 bits (1115), Expect = e-121
Identities = 218/218 (100%), Positives = 218/218 (100%)
Frame = +1
Query: 397 MGTRDDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTI 576
MGTRDDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTI
Sbjct: 1 MGTRDDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTI 60
Query: 577 KAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIM 756
KAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIM
Sbjct: 61 KAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIM 120
Query: 757 LVGNKSDLRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEIYRIVSQKQ 936
LVGNKSDLRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEIYRIVSQKQ
Sbjct: 121 LVGNKSDLRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEIYRIVSQKQ 180
Query: 937 IADRAAHDESPGNNVVDISVPPTTDGQKPNKLQCCQNL 1050
IADRAAHDESPGNNVVDISVPPTTDGQKPNKLQCCQNL
Sbjct: 181 IADRAAHDESPGNNVVDISVPPTTDGQKPNKLQCCQNL 218
>ref|NP_004654.1| ras-related protein Rab-11A [Homo sapiens].
Length = 216
Score = 387 bits (995), Expect = e-107
Identities = 199/218 (91%), Positives = 206/218 (94%)
Frame = +1
Query: 397 MGTRDDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTI 576
MGTRDDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTI
Sbjct: 1 MGTRDDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTI 60
Query: 577 KAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIM 756
KAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIM
Sbjct: 61 KAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIM 120
Query: 757 LVGNKSDLRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEIYRIVSQKQ 936
LVGNKSDLRHLRAVPTDEARAFAEKN LSFIETSALDSTNVE AF+ ILTEIYRIVSQKQ
Sbjct: 121 LVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIYRIVSQKQ 180
Query: 937 IADRAAHDESPGNNVVDISVPPTTDGQKPNKLQCCQNL 1050
++DR +D SP NNVV I VPPTT+ KP K+QCCQN+
Sbjct: 181 MSDRRENDMSPSNNVVPIHVPPTTE-NKP-KVQCCQNI 216
>ref|NP_065120.2| ras-related protein Rab-25 [Homo sapiens].
Length = 213
Score = 247 bits (631), Expect = 2e-65
Identities = 133/220 (60%), Positives = 165/220 (75%), Gaps = 3/220 (1%)
Frame = +1
Query: 400 GTRDDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIK 579
GT +D Y+++FKVVLIG+SGVGK+NLLSRFTRNEF+ +S++TIGVEF+TR++ + +K
Sbjct: 4 GTEED-YNFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVK 62
Query: 580 AQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIML 759
AQIWDTAG ERYRAITSAYYRGAVGALLV+D+ KH TY VERWLKEL DHA++ IV+ML
Sbjct: 63 AQIWDTAGLERYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVML 122
Query: 760 VGNKSDLRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEIYRIVSQKQI 939
VGNKSDL R VPT+EAR FAE N L F+ETSALDSTNVE AF+ +L EI+ VS+++
Sbjct: 123 VGNKSDLSQAREVPTEEARMFAENNGLLFLETSALDSTNVELAFETVLKEIFAKVSKQR- 181
Query: 940 ADRAAHDESPGNNVVDISVPPTTDGQKP---NKLQCCQNL 1050
S N I++ GQ+P K CC +L
Sbjct: 182 ------QNSIRTNA--ITLGSAQAGQEPGPGEKRACCISL 213
>ref|NP_116235.2| ras-related protein Rab-2B isoform 1 [Homo sapiens].
Length = 216
Score = 192 bits (488), Expect = 8e-49
Identities = 96/171 (56%), Positives = 120/171 (70%)
Frame = +1
Query: 418 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDT 597
Y YLFK ++IGD+GVGKS LL +FT F TIGVEF R + +DGK IK QIWDT
Sbjct: 3 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDT 62
Query: 598 AGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSD 777
AGQE +R+IT +YYRGA GALLVYDI + T+ ++ WL++ R H+ SN+VIML+GNKSD
Sbjct: 63 AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSD 122
Query: 778 LRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEIYRIVSQ 930
L R V +E AFA ++ L F+ETSA + NVEEAF N EIYR + Q
Sbjct: 123 LESRRDVKREEGEAFAREHGLIFMETSAKTACNVEEAFINTAKEIYRKIQQ 173
>ref|NP_002856.1| ras-related protein Rab-2A [Homo sapiens].
Length = 212
Score = 190 bits (483), Expect = 3e-48
Identities = 95/171 (55%), Positives = 121/171 (70%)
Frame = +1
Query: 418 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDT 597
Y YLFK ++IGD+GVGKS LL +FT F TIGVEF R I +DGK IK QIWDT
Sbjct: 3 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDT 62
Query: 598 AGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSD 777
AGQE +R+IT +YYRGA GALLVYDI + T+ ++ WL++ R H++SN+VIML+GNKSD
Sbjct: 63 AGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTTWLEDARQHSNSNMVIMLIGNKSD 122
Query: 778 LRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEIYRIVSQ 930
L R V +E AFA ++ L F+ETSA ++NVEEAF N EIY + +
Sbjct: 123 LESRREVKKEEGEAFAREHGLIFMETSAKTASNVEEAFINTAKEIYEKIQE 173
>ref|NP_057406.2| ras-related protein Rab-14 [Homo sapiens].
Length = 215
Score = 185 bits (469), Expect = 1e-46
Identities = 93/186 (50%), Positives = 123/186 (66%)
Frame = +1
Query: 397 MGTRDDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTI 576
M T Y Y+FK ++IGD GVGKS LL +FT +F + TIGVEF TR I+V G+ I
Sbjct: 1 MATAPYNYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKI 60
Query: 577 KAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIM 756
K QIWDTAGQER+RA+T +YYRGA GAL+VYDI + TY ++ WL + R+ + N VI+
Sbjct: 61 KLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVII 120
Query: 757 LVGNKSDLRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEIYRIVSQKQ 936
L+GNK+DL R V +EA+ FAE+N L F+E SA NVE+AF +IY+ +
Sbjct: 121 LIGNKADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAAKKIYQNIQDGS 180
Query: 937 IADRAA 954
+ AA
Sbjct: 181 LDLNAA 186
>ref|NP_112243.1| ras-related protein Rab-1B [Homo sapiens].
Length = 201
Score = 184 bits (467), Expect = 2e-46
Identities = 97/200 (48%), Positives = 131/200 (65%)
Frame = +1
Query: 415 EYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWD 594
EYDYLFK++LIGDSGVGKS LL RF + + STIGV+F R+I++DGKTIK QIWD
Sbjct: 4 EYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWD 63
Query: 595 TAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKS 774
TAGQER+R ITS+YYRGA G ++VYD+ +Y NV++WL+E+ +A N+ +LVGNKS
Sbjct: 64 TAGQERFRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYASENVNKLLVGNKS 123
Query: 775 DLRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEIYRIVSQKQIADRAA 954
DL + V A+ FA+ + F+ETSA ++TNVE+AF + EI ++ A+
Sbjct: 124 DLTTKKVVDNTTAKEFADSLGIPFLETSAKNATNVEQAFMTMAAEI----KKRMGPGAAS 179
Query: 955 HDESPGNNVVDISVPPTTDG 1014
E P + V P G
Sbjct: 180 GGERPNLKIDSTPVKPAGGG 199
>ref|NP_004152.1| ras-related protein Rab-1A isoform 1 [Homo sapiens].
Length = 205
Score = 181 bits (459), Expect = 2e-45
Identities = 96/206 (46%), Positives = 135/206 (65%)
Frame = +1
Query: 397 MGTRDDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTI 576
M + + EYDYLFK++LIGDSGVGKS LL RF + + STIGV+F R+I++DGKTI
Sbjct: 1 MSSMNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTI 60
Query: 577 KAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIM 756
K QIWDTAGQER+R ITS+YYRGA G ++VYD+ ++ NV++WL+E+ +A N+ +
Sbjct: 61 KLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKL 120
Query: 757 LVGNKSDLRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEIYRIVSQKQ 936
LVGNK DL + V A+ FA+ + F+ETSA ++TNVE++F + EI +K+
Sbjct: 121 LVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEI-----KKR 175
Query: 937 IADRAAHDESPGNNVVDISVPPTTDG 1014
+ A + +NV S P G
Sbjct: 176 MGPGATAGGAEKSNVKIQSTPVKQSG 201
>ref|NP_057614.1| ras-related protein Rab-8B [Homo sapiens].
Length = 207
Score = 180 bits (457), Expect = 3e-45
Identities = 87/184 (47%), Positives = 124/184 (67%)
Frame = +1
Query: 418 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDT 597
YDYLFK++LIGDSGVGK+ LL RF+ + FN STIG++F R+I++DGK IK QIWDT
Sbjct: 5 YDYLFKLLLIGDSGVGKTCLLFRFSEDAFNTTFISTIGIDFKIRTIELDGKKIKLQIWDT 64
Query: 598 AGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSD 777
AGQER+R IT+AYYRGA+G +LVYDI +++N++ W++ + +HA S++ M++GNK D
Sbjct: 65 AGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEEHASSDVERMILGNKCD 124
Query: 778 LRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEIYRIVSQKQIADRAAH 957
+ R V + A + F+ETSA S NVEEAF + +I +++K +A
Sbjct: 125 MNDKRQVSKERGEKLAIDYGIKFLETSAKSSANVEEAFFTLARDIMTKLNRKMNDSNSAG 184
Query: 958 DESP 969
P
Sbjct: 185 AGGP 188
>ref|NP_940892.1| ras-related protein Rab-43 [Homo sapiens].
Length = 212
Score = 180 bits (457), Expect = 3e-45
Identities = 90/179 (50%), Positives = 126/179 (70%), Gaps = 1/179 (0%)
Frame = +1
Query: 379 AGSARTMGTRDDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQ 558
AG G D++YD+LFK+VL+GD+ VGK+ ++ RF F+ STIGV+F ++++
Sbjct: 2 AGPGPGPGDPDEQYDFLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLE 61
Query: 559 VDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHAD 738
+ GK +K QIWDTAGQER+R IT +YYR A GA+L YDI K ++ +V W++++R +A
Sbjct: 62 IQGKRVKLQIWDTAGQERFRTITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYAG 121
Query: 739 SNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNN-LSFIETSALDSTNVEEAFKNILTEI 912
SNIV +L+GNKSDL LR V EA++ AE + L IETSA DS+NVEEAF + TE+
Sbjct: 122 SNIVQLLIGNKSDLSELREVSLAEAQSLAEHYDILCAIETSAKDSSNVEEAFLRVATEL 180
Database: RefSeq44_HP.fasta
Posted date: Nov 15, 2010 4:36 PM
Number of letters in database: 18,324,212
Number of sequences in database: 33,950
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33950
Number of Hits to DB: 70,696,832
Number of extensions: 2238793
Number of successful extensions: 10861
Number of sequences better than 1.0e-05: 187
Number of HSP's gapped: 10659
Number of HSP's successfully gapped: 187
Length of query: 542
Length of database: 18,324,212
Length adjustment: 107
Effective length of query: 435
Effective length of database: 14,691,562
Effective search space: 6390829470
Effective search space used: 6390829470
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqMP_Rel44
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20070806C-008028
(1626 letters)
Database: RefSeq44_MP.fasta
29,866 sequences; 15,452,059 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_033023.1| ras-related protein Rab-11B [Mus musculus]. 431 e-120
Alignment gi|NP_059078.2| ras-related protein Rab-11A [Mus musculus]. 387 e-107
Alignment gi|NP_058595.2| ras-related protein Rab-25 [Mus musculus]. 248 1e-65
Alignment gi|NP_766189.1| ras-related protein Rab-2B [Mus musculus]. 191 1e-48
Alignment gi|NP_067493.1| ras-related protein Rab-2A [Mus musculus]. 190 2e-48
Alignment gi|NP_083852.1| ras-related protein Rab-1B [Mus musculus]. 185 1e-46
Alignment gi|NP_080973.1| ras-related protein Rab-14 [Mus musculus]. 185 1e-46
Alignment gi|NP_001034483.1| ras-related protein Rab-43 isoform a [Mus mu... 184 2e-46
Alignment gi|NP_775589.1| ras-related protein Rab-8B [Mus musculus]. 182 9e-46
Alignment gi|NP_033022.1| ras-related protein Rab-1A [Mus musculus]. 181 1e-45
>ref|NP_033023.1| ras-related protein Rab-11B [Mus musculus].
Length = 218
Score = 431 bits (1107), Expect = e-120
Identities = 216/218 (99%), Positives = 218/218 (100%)
Frame = +1
Query: 397 MGTRDDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTI 576
MGTRDDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTI
Sbjct: 1 MGTRDDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTI 60
Query: 577 KAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIM 756
KAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIM
Sbjct: 61 KAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIM 120
Query: 757 LVGNKSDLRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEIYRIVSQKQ 936
LVGNKSDLRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEIYRIVSQKQ
Sbjct: 121 LVGNKSDLRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEIYRIVSQKQ 180
Query: 937 IADRAAHDESPGNNVVDISVPPTTDGQKPNKLQCCQNL 1050
IADRAAHDESPGNNVVDISVPPTTDGQ+PNKLQCCQ+L
Sbjct: 181 IADRAAHDESPGNNVVDISVPPTTDGQRPNKLQCCQSL 218
>ref|NP_059078.2| ras-related protein Rab-11A [Mus musculus].
Length = 216
Score = 387 bits (995), Expect = e-107
Identities = 199/218 (91%), Positives = 206/218 (94%)
Frame = +1
Query: 397 MGTRDDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTI 576
MGTRDDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTI
Sbjct: 1 MGTRDDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTI 60
Query: 577 KAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIM 756
KAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIM
Sbjct: 61 KAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIM 120
Query: 757 LVGNKSDLRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEIYRIVSQKQ 936
LVGNKSDLRHLRAVPTDEARAFAEKN LSFIETSALDSTNVE AF+ ILTEIYRIVSQKQ
Sbjct: 121 LVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIYRIVSQKQ 180
Query: 937 IADRAAHDESPGNNVVDISVPPTTDGQKPNKLQCCQNL 1050
++DR +D SP NNVV I VPPTT+ KP K+QCCQN+
Sbjct: 181 MSDRRENDMSPSNNVVPIHVPPTTE-NKP-KVQCCQNI 216
>ref|NP_058595.2| ras-related protein Rab-25 [Mus musculus].
Length = 213
Score = 248 bits (633), Expect = 1e-65
Identities = 136/223 (60%), Positives = 165/223 (73%), Gaps = 5/223 (2%)
Frame = +1
Query: 397 MGTRDDE-YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKT 573
MG R DE Y+++FKVVLIG+SGVGK+NLLSRFTRNEF+ +S++TIGVEF+TR++ +
Sbjct: 1 MGNRTDEDYNFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAA 60
Query: 574 IKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVI 753
+KAQIWDTAG ERYRAITSAYYRGAVGALLV+D+ KH TY VERWLKEL DHA++ IV+
Sbjct: 61 VKAQIWDTAGLERYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVV 120
Query: 754 MLVGNKSDLRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEIYRIVS-Q 930
MLVGNKSDL R VPT+EA FAE N L F+ETSALDSTNVE AF+ +L EI+ VS Q
Sbjct: 121 MLVGNKSDLSQAREVPTEEACMFAENNGLLFLETSALDSTNVELAFQTVLKEIFAKVSKQ 180
Query: 931 KQIADRAAHDESPGNNVVDISVPPTTDGQKP---NKLQCCQNL 1050
KQ + R + I++ GQ P K CC +L
Sbjct: 181 KQNSTRTS----------AITLGNAQAGQDPGPGEKRACCISL 213
>ref|NP_766189.1| ras-related protein Rab-2B [Mus musculus].
Length = 216
Score = 191 bits (485), Expect = 1e-48
Identities = 95/171 (55%), Positives = 120/171 (70%)
Frame = +1
Query: 418 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDT 597
Y YLFK ++IGD+GVGKS LL +FT F TIGVEF R + +DGK IK QIWDT
Sbjct: 3 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDT 62
Query: 598 AGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSD 777
AGQE +R+IT +YYRGA GALLVYDI + T+ ++ WL++ R H+ SN+VIML+GNKSD
Sbjct: 63 AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSD 122
Query: 778 LRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEIYRIVSQ 930
L R V +E AFA ++ L F+ETSA + NVEEA+ N EIYR + Q
Sbjct: 123 LESRRDVKREEGEAFAREHGLIFMETSAKTACNVEEAYINTAKEIYRKIQQ 173
>ref|NP_067493.1| ras-related protein Rab-2A [Mus musculus].
Length = 212
Score = 190 bits (483), Expect = 2e-48
Identities = 95/171 (55%), Positives = 121/171 (70%)
Frame = +1
Query: 418 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDT 597
Y YLFK ++IGD+GVGKS LL +FT F TIGVEF R I +DGK IK QIWDT
Sbjct: 3 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDT 62
Query: 598 AGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSD 777
AGQE +R+IT +YYRGA GALLVYDI + T+ ++ WL++ R H++SN+VIML+GNKSD
Sbjct: 63 AGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTTWLEDARQHSNSNMVIMLIGNKSD 122
Query: 778 LRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEIYRIVSQ 930
L R V +E AFA ++ L F+ETSA ++NVEEAF N EIY + +
Sbjct: 123 LESRREVKKEEGEAFAREHGLIFMETSAKTASNVEEAFINTAKEIYEKIQE 173
>ref|NP_083852.1| ras-related protein Rab-1B [Mus musculus].
Length = 201
Score = 185 bits (469), Expect = 1e-46
Identities = 97/200 (48%), Positives = 132/200 (66%)
Frame = +1
Query: 415 EYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWD 594
EYDYLFK++LIGDSGVGKS LL RF + + STIGV+F R+I++DGKTIK QIWD
Sbjct: 4 EYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWD 63
Query: 595 TAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKS 774
TAGQER+R ITS+YYRGA G ++VYD+ +Y NV++WL+E+ +A N+ +LVGNKS
Sbjct: 64 TAGQERFRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYASENVNKLLVGNKS 123
Query: 775 DLRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEIYRIVSQKQIADRAA 954
DL + V A+ FA+ + F+ETSA ++TNVE+AF + EI ++ A+
Sbjct: 124 DLTTKKVVDNTTAKEFADSLGVPFLETSAKNATNVEQAFMTMAAEI----KKRMGPGAAS 179
Query: 955 HDESPGNNVVDISVPPTTDG 1014
E P + V P + G
Sbjct: 180 GGERPNLKIDSTPVKPASGG 199
>ref|NP_080973.1| ras-related protein Rab-14 [Mus musculus].
Length = 215
Score = 185 bits (469), Expect = 1e-46
Identities = 93/186 (50%), Positives = 123/186 (66%)
Frame = +1
Query: 397 MGTRDDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTI 576
M T Y Y+FK ++IGD GVGKS LL +FT +F + TIGVEF TR I+V G+ I
Sbjct: 1 MATAPYNYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKI 60
Query: 577 KAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIM 756
K QIWDTAGQER+RA+T +YYRGA GAL+VYDI + TY ++ WL + R+ + N VI+
Sbjct: 61 KLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVII 120
Query: 757 LVGNKSDLRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEIYRIVSQKQ 936
L+GNK+DL R V +EA+ FAE+N L F+E SA NVE+AF +IY+ +
Sbjct: 121 LIGNKADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAAKKIYQNIQDGS 180
Query: 937 IADRAA 954
+ AA
Sbjct: 181 LDLNAA 186
>ref|NP_001034483.1| ras-related protein Rab-43 isoform a [Mus musculus].
Length = 210
Score = 184 bits (466), Expect = 2e-46
Identities = 89/172 (51%), Positives = 125/172 (72%), Gaps = 1/172 (0%)
Frame = +1
Query: 400 GTRDDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIK 579
G +D+ YD+LFK+VL+GD+ VGK+ ++ RF F+ STIGV+F +++++ GK +K
Sbjct: 7 GDQDEHYDFLFKLVLVGDASVGKTCVVQRFKTGAFSARQGSTIGVDFTMKTLEIQGKRVK 66
Query: 580 AQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIML 759
QIWDTAGQER+R IT +YYR A GA+L YDI+K T+ +V W++++R +A SNIV +L
Sbjct: 67 LQIWDTAGQERFRTITQSYYRSANGAILAYDISKRSTFLSVPHWIEDVRKYAGSNIVQLL 126
Query: 760 VGNKSDLRHLRAVPTDEARAFAEKNN-LSFIETSALDSTNVEEAFKNILTEI 912
+GNKSDL R VP EA++ AE + L IETSA DS+NVEEAF + TE+
Sbjct: 127 IGNKSDLADFREVPLAEAQSLAEHYDILCAIETSAKDSSNVEEAFTRVATEL 178
>ref|NP_775589.1| ras-related protein Rab-8B [Mus musculus].
Length = 207
Score = 182 bits (461), Expect = 9e-46
Identities = 86/172 (50%), Positives = 122/172 (70%)
Frame = +1
Query: 418 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDT 597
YDYLFK++LIGDSGVGK+ LL RF+ + FN STIG++F R+I++DGK IK QIWDT
Sbjct: 5 YDYLFKLLLIGDSGVGKTCLLFRFSEDAFNTTFISTIGIDFKIRTIELDGKKIKLQIWDT 64
Query: 598 AGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSD 777
AGQER+R IT+AYYRGA+G +LVYDI +++N++ W++ + +HA S++ M++GNK D
Sbjct: 65 AGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEEHASSDVERMILGNKCD 124
Query: 778 LRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEIYRIVSQK 933
+ R V + A + F+ETSA STNVEEAF + +I +++K
Sbjct: 125 MNDKRQVSKERGEKLAIDYGIKFLETSAKSSTNVEEAFFTLARDIMTKLNRK 176
>ref|NP_033022.1| ras-related protein Rab-1A [Mus musculus].
Length = 205
Score = 181 bits (459), Expect = 1e-45
Identities = 96/206 (46%), Positives = 135/206 (65%)
Frame = +1
Query: 397 MGTRDDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTI 576
M + + EYDYLFK++LIGDSGVGKS LL RF + + STIGV+F R+I++DGKTI
Sbjct: 1 MSSMNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTI 60
Query: 577 KAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIM 756
K QIWDTAGQER+R ITS+YYRGA G ++VYD+ ++ NV++WL+E+ +A N+ +
Sbjct: 61 KLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKL 120
Query: 757 LVGNKSDLRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEIYRIVSQKQ 936
LVGNK DL + V A+ FA+ + F+ETSA ++TNVE++F + EI +K+
Sbjct: 121 LVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEI-----KKR 175
Query: 937 IADRAAHDESPGNNVVDISVPPTTDG 1014
+ A + +NV S P G
Sbjct: 176 MGPGATAGGAEKSNVKIQSTPVKQSG 201
Database: RefSeq44_MP.fasta
Posted date: Nov 15, 2010 4:36 PM
Number of letters in database: 15,452,059
Number of sequences in database: 29,866
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 29866
Number of Hits to DB: 58,188,262
Number of extensions: 1790941
Number of successful extensions: 8556
Number of sequences better than 1.0e-05: 144
Number of HSP's gapped: 8402
Number of HSP's successfully gapped: 144
Length of query: 542
Length of database: 15,452,059
Length adjustment: 106
Effective length of query: 436
Effective length of database: 12,286,263
Effective search space: 5356810668
Effective search space used: 5356810668
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqSP_Rel44
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20070806C-008028
(1626 letters)
Database: RefSeq44_SP.fasta
20,576 sequences; 9,542,844 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003123211.1| PREDICTED: ras-related protein Rab-11B-like ... 434 e-122
Alignment gi|NP_001026958.1| ras-related protein Rab-11A [Sus scrofa]. 387 e-108
Alignment gi|XP_001928392.1| PREDICTED: ras-related protein Rab-25 [Sus s... 253 2e-67
Alignment gi|XP_003128629.1| PREDICTED: ras-related protein Rab-2B-like [... 192 4e-49
Alignment gi|XP_003128612.1| PREDICTED: ras-related protein Rab-2B-like [... 192 4e-49
Alignment gi|XP_001926739.2| PREDICTED: ras-related protein Rab-2A [Sus s... 190 1e-48
Alignment gi|NP_001026953.1| ras-related protein Rab-14 [Sus scrofa]. 185 6e-47
Alignment gi|NP_001116645.1| ras-related protein Rab-1B [Sus scrofa]. 181 9e-46
Alignment gi|NP_001026957.1| ras-related protein Rab-1A [Sus scrofa]. 181 1e-45
Alignment gi|XP_003127192.1| PREDICTED: ras-related protein Rab-4B-like i... 178 6e-45
>ref|XP_003123211.1| PREDICTED: ras-related protein Rab-11B-like [Sus scrofa].
Length = 218
Score = 434 bits (1115), Expect = e-122
Identities = 218/218 (100%), Positives = 218/218 (100%)
Frame = +1
Query: 397 MGTRDDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTI 576
MGTRDDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTI
Sbjct: 1 MGTRDDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTI 60
Query: 577 KAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIM 756
KAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIM
Sbjct: 61 KAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIM 120
Query: 757 LVGNKSDLRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEIYRIVSQKQ 936
LVGNKSDLRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEIYRIVSQKQ
Sbjct: 121 LVGNKSDLRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEIYRIVSQKQ 180
Query: 937 IADRAAHDESPGNNVVDISVPPTTDGQKPNKLQCCQNL 1050
IADRAAHDESPGNNVVDISVPPTTDGQKPNKLQCCQNL
Sbjct: 181 IADRAAHDESPGNNVVDISVPPTTDGQKPNKLQCCQNL 218
>ref|NP_001026958.1| ras-related protein Rab-11A [Sus scrofa].
Length = 216
Score = 387 bits (995), Expect = e-108
Identities = 199/218 (91%), Positives = 206/218 (94%)
Frame = +1
Query: 397 MGTRDDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTI 576
MGTRDDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTI
Sbjct: 1 MGTRDDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTI 60
Query: 577 KAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIM 756
KAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIM
Sbjct: 61 KAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIM 120
Query: 757 LVGNKSDLRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEIYRIVSQKQ 936
LVGNKSDLRHLRAVPTDEARAFAEKN LSFIETSALDSTNVE AF+ ILTEIYRIVSQKQ
Sbjct: 121 LVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIYRIVSQKQ 180
Query: 937 IADRAAHDESPGNNVVDISVPPTTDGQKPNKLQCCQNL 1050
++DR +D SP NNVV I VPPTT+ KP K+QCCQN+
Sbjct: 181 MSDRRENDMSPSNNVVPIHVPPTTE-NKP-KVQCCQNI 216
>ref|XP_001928392.1| PREDICTED: ras-related protein Rab-25 [Sus scrofa].
Length = 213
Score = 253 bits (645), Expect = 2e-67
Identities = 133/219 (60%), Positives = 164/219 (74%), Gaps = 1/219 (0%)
Frame = +1
Query: 397 MGTRDDE-YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKT 573
MG R +E Y+++FKVVLIG+SGVGK+NLLSRFTRNEF+ +S++TIGVEF+TR++ +
Sbjct: 1 MGNRSEEDYNFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAA 60
Query: 574 IKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVI 753
+KAQIWDTAG ERYRAITSAYYRGAVGALLV+D+ KH TY VERWLKEL DHA++ IV+
Sbjct: 61 VKAQIWDTAGLERYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVV 120
Query: 754 MLVGNKSDLRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEIYRIVSQK 933
MLVGNKSDL R VPTDEAR FAE N L F+ETSALDSTNVE AF+ +L EI+ VS++
Sbjct: 121 MLVGNKSDLSQAREVPTDEARMFAENNGLLFLETSALDSTNVELAFETVLKEIFAKVSKQ 180
Query: 934 QIADRAAHDESPGNNVVDISVPPTTDGQKPNKLQCCQNL 1050
+ + S N + S P + K CC +L
Sbjct: 181 R------QNSSRTNAITLGSAQPGQEPGPGEKRACCISL 213
>ref|XP_003128629.1| PREDICTED: ras-related protein Rab-2B-like [Sus scrofa].
Length = 216
Score = 192 bits (488), Expect = 4e-49
Identities = 96/171 (56%), Positives = 120/171 (70%)
Frame = +1
Query: 418 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDT 597
Y YLFK ++IGD+GVGKS LL +FT F TIGVEF R + +DGK IK QIWDT
Sbjct: 3 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDT 62
Query: 598 AGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSD 777
AGQE +R+IT +YYRGA GALLVYDI + T+ ++ WL++ R H+ SN+VIML+GNKSD
Sbjct: 63 AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSD 122
Query: 778 LRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEIYRIVSQ 930
L R V +E AFA ++ L F+ETSA + NVEEAF N EIYR + Q
Sbjct: 123 LESRRDVKREEGEAFAREHGLIFMETSAKTACNVEEAFINTAKEIYRKIQQ 173
>ref|XP_003128612.1| PREDICTED: ras-related protein Rab-2B-like [Sus scrofa].
Length = 216
Score = 192 bits (488), Expect = 4e-49
Identities = 96/171 (56%), Positives = 120/171 (70%)
Frame = +1
Query: 418 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDT 597
Y YLFK ++IGD+GVGKS LL +FT F TIGVEF R + +DGK IK QIWDT
Sbjct: 3 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDT 62
Query: 598 AGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSD 777
AGQE +R+IT +YYRGA GALLVYDI + T+ ++ WL++ R H+ SN+VIML+GNKSD
Sbjct: 63 AGQESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSD 122
Query: 778 LRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEIYRIVSQ 930
L R V +E AFA ++ L F+ETSA + NVEEAF N EIYR + Q
Sbjct: 123 LESRRDVKREEGEAFAREHGLIFMETSAKTACNVEEAFINTAKEIYRKIQQ 173
>ref|XP_001926739.2| PREDICTED: ras-related protein Rab-2A [Sus scrofa].
Length = 212
Score = 190 bits (483), Expect = 1e-48
Identities = 95/171 (55%), Positives = 121/171 (70%)
Frame = +1
Query: 418 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDT 597
Y YLFK ++IGD+GVGKS LL +FT F TIGVEF R I +DGK IK QIWDT
Sbjct: 3 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDT 62
Query: 598 AGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSD 777
AGQE +R+IT +YYRGA GALLVYDI + T+ ++ WL++ R H++SN+VIML+GNKSD
Sbjct: 63 AGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTTWLEDARQHSNSNMVIMLIGNKSD 122
Query: 778 LRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEIYRIVSQ 930
L R V +E AFA ++ L F+ETSA ++NVEEAF N EIY + +
Sbjct: 123 LESRREVKKEEGEAFAREHGLIFMETSAKTASNVEEAFINTAKEIYEKIQE 173
>ref|NP_001026953.1| ras-related protein Rab-14 [Sus scrofa].
Length = 215
Score = 185 bits (469), Expect = 6e-47
Identities = 93/186 (50%), Positives = 123/186 (66%)
Frame = +1
Query: 397 MGTRDDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTI 576
M T Y Y+FK ++IGD GVGKS LL +FT +F + TIGVEF TR I+V G+ I
Sbjct: 1 MATTPYNYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKI 60
Query: 577 KAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIM 756
K QIWDTAGQER+RA+T +YYRGA GAL+VYDI + TY ++ WL + R+ + N VI+
Sbjct: 61 KLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVII 120
Query: 757 LVGNKSDLRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEIYRIVSQKQ 936
L+GNK+DL R V +EA+ FAE+N L F+E SA NVE+AF +IY+ +
Sbjct: 121 LIGNKADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAAKKIYQNIQDGS 180
Query: 937 IADRAA 954
+ AA
Sbjct: 181 LDLNAA 186
>ref|NP_001116645.1| ras-related protein Rab-1B [Sus scrofa].
Length = 201
Score = 181 bits (459), Expect = 9e-46
Identities = 91/166 (54%), Positives = 120/166 (72%)
Frame = +1
Query: 415 EYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWD 594
EYDYLFK++LIGDSGVGKS LL RF + + STIGV+F R+I++DGKTIK QIWD
Sbjct: 4 EYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWD 63
Query: 595 TAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKS 774
TAGQER R ITS+YYRGA G ++VYD+ +Y NV++WL+E+ +A N+ +LVGNKS
Sbjct: 64 TAGQERGRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYASENVNKLLVGNKS 123
Query: 775 DLRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEI 912
DL + V A+ FA+ + F+ETSA ++TNVE+AF + EI
Sbjct: 124 DLTTKKVVDNTTAKEFADSLGIPFLETSAKNATNVEQAFMTMAAEI 169
>ref|NP_001026957.1| ras-related protein Rab-1A [Sus scrofa].
Length = 205
Score = 181 bits (458), Expect = 1e-45
Identities = 96/206 (46%), Positives = 135/206 (65%)
Frame = +1
Query: 397 MGTRDDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTI 576
M + + EYDYLFK++LIGDSGVGKS LL RF + + STIGV+F R+I++DGKTI
Sbjct: 1 MSSMNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTI 60
Query: 577 KAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIM 756
K QIWDTAGQER+R ITS+YYRGA G ++VYD+ ++ NV++WL+E+ +A N+ +
Sbjct: 61 KLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQGSFNNVKQWLQEIDRYASENVNKL 120
Query: 757 LVGNKSDLRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEIYRIVSQKQ 936
LVGNK DL + V A+ FA+ + F+ETSA ++TNVE++F + EI +K+
Sbjct: 121 LVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEI-----KKR 175
Query: 937 IADRAAHDESPGNNVVDISVPPTTDG 1014
+ A + +NV S P G
Sbjct: 176 MGPGATAGGAEKSNVKIQSTPVKQSG 201
>ref|XP_003127192.1| PREDICTED: ras-related protein Rab-4B-like isoform 2 [Sus scrofa].
Length = 213
Score = 178 bits (452), Expect = 6e-45
Identities = 89/160 (55%), Positives = 112/160 (70%)
Frame = +1
Query: 412 DEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIW 591
+ YD+LFK ++IG +G GKS LL +F N+F +S TIGVEF +R + V GKT+K QIW
Sbjct: 3 ETYDFLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIW 62
Query: 592 DTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNK 771
DTAGQER+R++T +YYRGA GALLVYDI TY ++ WL + R A NIV++L GNK
Sbjct: 63 DTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNSLAAWLTDARTLASPNIVVILCGNK 122
Query: 772 SDLRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAF 891
DL R V EA FA++N L F+ETSAL NVEEAF
Sbjct: 123 KDLDPEREVTFLEASRFAQENELMFLETSALTGENVEEAF 162
Database: RefSeq44_SP.fasta
Posted date: Nov 15, 2010 4:36 PM
Number of letters in database: 9,542,844
Number of sequences in database: 20,576
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 20576
Number of Hits to DB: 37,523,671
Number of extensions: 1206635
Number of successful extensions: 6317
Number of sequences better than 1.0e-05: 105
Number of HSP's gapped: 6212
Number of HSP's successfully gapped: 105
Length of query: 542
Length of database: 9,542,844
Length adjustment: 103
Effective length of query: 439
Effective length of database: 7,423,516
Effective search space: 3258923524
Effective search space used: 3258923524
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)