Search to RefSeqBP_Rel44
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20070806C-008059
(1143 letters)
Database: RefSeq44_BP.fasta
33,615 sequences; 18,071,151 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_776447.1| clathrin light chain A [Bos taurus]. 355 3e-98
Alignment gi|NP_776702.1| clathrin light chain B [Bos taurus]. 245 6e-65
>ref|NP_776447.1| clathrin light chain A [Bos taurus].
Length = 243
Score = 355 bits (912), Expect = 3e-98
Identities = 190/243 (78%), Positives = 194/243 (79%), Gaps = 31/243 (12%)
Frame = +1
Query: 208 MADLDPFGAPAG-PSLGNGVAGEEDPAAAFLAQQESEIAGIENDEAFAILDXXXXXXXXX 384
MA+LDPFG PAG P+LGNGVAGEEDPAAAFLAQQESEIAGIENDEAFAILD
Sbjct: 1 MAELDPFGVPAGGPALGNGVAGEEDPAAAFLAQQESEIAGIENDEAFAILDGGAPGSQPH 60
Query: 385 XXXXXXXDAVDGVMNGEYYQESNGPTDSYAAISQVDRLQSEPESIRKWREEQTERLEALD 564
DAVDGV NG+YYQESNGPTDSYAAISQVDRLQSEPESIRKWREEQTERLEALD
Sbjct: 61 GEPPGIPDAVDGVTNGDYYQESNGPTDSYAAISQVDRLQSEPESIRKWREEQTERLEALD 120
Query: 565 ANSRKQEAEWKEKAIKELEEWYARQDEQLQKTKANNR----------------------- 675
ANSRKQEAEWKEKAIKEL+EWYARQDEQLQKTKANNR
Sbjct: 121 ANSRKQEAEWKEKAIKELDEWYARQDEQLQKTKANNRVADEAFYKQPFADVIGYVTNINH 180
Query: 676 -------AAEEAFVNDIEESSPGTEWERVARLCDFNPKSSKQAKDVSRMRSVLISLKQAP 834
AAEEAFVNDIEESSPGTEWERVARLCDFNPKSSKQAKDVSRMRSVLISLKQAP
Sbjct: 181 PCYSLEQAAEEAFVNDIEESSPGTEWERVARLCDFNPKSSKQAKDVSRMRSVLISLKQAP 240
Query: 835 LVH 843
LVH
Sbjct: 241 LVH 243
>ref|NP_776702.1| clathrin light chain B [Bos taurus].
Length = 210
Score = 245 bits (625), Expect = 6e-65
Identities = 124/206 (60%), Positives = 147/206 (71%)
Frame = +1
Query: 220 DPFGAPAGPSLGNGVAGEEDPAAAFLAQQESEIAGIENDEAFAILDXXXXXXXXXXXXXX 399
D FG + G A EEDPAAAFLAQQESEIAGIENDE F
Sbjct: 3 DDFGFFSSSESGAPEAAEEDPAAAFLAQQESEIAGIENDEGFGAPAGSQGGLAQPGPASG 62
Query: 400 XXDAVDGVMNGEYYQESNGPTDSYAAISQVDRLQSEPESIRKWREEQTERLEALDANSRK 579
+ + +NG+ +QE+NGP D YAAI+Q DRL EPESIRKWREEQ +RL+ LDA S+
Sbjct: 63 ASEDMGATVNGDVFQEANGPADGYAAIAQADRLTQEPESIRKWREEQRKRLQELDAASKV 122
Query: 580 QEAEWKEKAIKELEEWYARQDEQLQKTKANNRAAEEAFVNDIEESSPGTEWERVARLCDF 759
E EW+EKA K+LEEW RQ EQ++K K NNRA+EEAFV + +E +PGTEWE+VA+LCDF
Sbjct: 123 MEQEWREKAKKDLEEWNQRQSEQVEKNKINNRASEEAFVKESKEETPGTEWEKVAQLCDF 182
Query: 760 NPKSSKQAKDVSRMRSVLISLKQAPL 837
NPKSSKQ KDVSR+RSVL+SLKQ PL
Sbjct: 183 NPKSSKQCKDVSRLRSVLMSLKQTPL 208
Database: RefSeq44_BP.fasta
Posted date: Nov 15, 2010 4:36 PM
Number of letters in database: 18,071,151
Number of sequences in database: 33,615
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33615
Number of Hits to DB: 35,269,493
Number of extensions: 823732
Number of successful extensions: 3911
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 3882
Number of HSP's successfully gapped: 2
Length of query: 381
Length of database: 18,071,151
Length adjustment: 104
Effective length of query: 277
Effective length of database: 14,575,191
Effective search space: 4037327907
Effective search space used: 4037327907
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqCP_Rel44
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20070806C-008059
(1143 letters)
Database: RefSeq44_CP.fasta
33,359 sequences; 18,921,627 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_866787.1| PREDICTED: similar to clathrin, light polypepti... 370 e-102
Alignment gi|XP_866825.1| PREDICTED: similar to Clathrin light chain A (L... 360 2e-99
Alignment gi|XP_866761.1| PREDICTED: similar to Clathrin light chain A (L... 359 3e-99
Alignment gi|XP_531996.2| PREDICTED: similar to Clathrin light chain A (L... 354 8e-98
Alignment gi|XP_866835.1| PREDICTED: similar to clathrin, light polypepti... 265 5e-71
Alignment gi|XP_866066.1| PREDICTED: similar to clathrin, light polypepti... 242 4e-64
Alignment gi|XP_866115.1| PREDICTED: similar to clathrin, light polypepti... 241 9e-64
Alignment gi|XP_866083.1| PREDICTED: similar to clathrin, light polypepti... 239 3e-63
Alignment gi|XP_866050.1| PREDICTED: similar to clathrin, light polypepti... 239 3e-63
Alignment gi|XP_866801.1| PREDICTED: similar to Clathrin light chain A (L... 236 4e-62
>ref|XP_866787.1| PREDICTED: similar to clathrin, light polypeptide A isoform a
isoform 3 [Canis familiaris].
Length = 218
Score = 370 bits (950), Expect = e-102
Identities = 193/218 (88%), Positives = 196/218 (89%), Gaps = 6/218 (2%)
Frame = +1
Query: 208 MADLDPFGAPA----GPSLGNGVAG--EEDPAAAFLAQQESEIAGIENDEAFAILDXXXX 369
MA+LDPFGAPA GP+LGNGVAG EEDPAAAFLAQQESEIAGIENDEAFAILD
Sbjct: 1 MAELDPFGAPASAPGGPALGNGVAGAGEEDPAAAFLAQQESEIAGIENDEAFAILDGGAP 60
Query: 370 XXXXXXXXXXXXDAVDGVMNGEYYQESNGPTDSYAAISQVDRLQSEPESIRKWREEQTER 549
DAVDGVMNGEYYQESNGPTDSYAAISQVDRLQSEPESIRKWREEQTER
Sbjct: 61 GPQPHGEPPGVPDAVDGVMNGEYYQESNGPTDSYAAISQVDRLQSEPESIRKWREEQTER 120
Query: 550 LEALDANSRKQEAEWKEKAIKELEEWYARQDEQLQKTKANNRAAEEAFVNDIEESSPGTE 729
LEALDANSRKQEAEWKEKAIKELEEWYARQDEQLQKTKANNRAAEEAFVNDI+ESSPGTE
Sbjct: 121 LEALDANSRKQEAEWKEKAIKELEEWYARQDEQLQKTKANNRAAEEAFVNDIDESSPGTE 180
Query: 730 WERVARLCDFNPKSSKQAKDVSRMRSVLISLKQAPLVH 843
WERVARLCDFNPKSSKQAKDVSRMRSVLISLKQAPLVH
Sbjct: 181 WERVARLCDFNPKSSKQAKDVSRMRSVLISLKQAPLVH 218
>ref|XP_866825.1| PREDICTED: similar to Clathrin light chain A (Lca) isoform 6 [Canis
familiaris].
Length = 230
Score = 360 bits (923), Expect = 2e-99
Identities = 192/230 (83%), Positives = 196/230 (85%), Gaps = 18/230 (7%)
Frame = +1
Query: 208 MADLDPFGAPA----GPSLGNGVAG--EEDPAAAFLAQQESEIAGIENDEAFAILDXXXX 369
MA+LDPFGAPA GP+LGNGVAG EEDPAAAFLAQQESEIAGIENDEAFAILD
Sbjct: 1 MAELDPFGAPASAPGGPALGNGVAGAGEEDPAAAFLAQQESEIAGIENDEAFAILDGGAP 60
Query: 370 XXXXXXXXXXXXDAVDGVMNGEYYQESNGPTDSYAAISQVDRLQSEPESIRKWREEQTER 549
DAVDGVMNGEYYQESNGPTDSYAAISQVDRLQSEPESIRKWREEQTER
Sbjct: 61 GPQPHGEPPGVPDAVDGVMNGEYYQESNGPTDSYAAISQVDRLQSEPESIRKWREEQTER 120
Query: 550 LEALDANSRKQEAEWKEKAIKELEEWYARQDEQLQKTKANN------------RAAEEAF 693
LEALDANSRKQEAEWKEKAIKELEEWYARQDEQLQKTKANN +AAEEAF
Sbjct: 121 LEALDANSRKQEAEWKEKAIKELEEWYARQDEQLQKTKANNSTNINHPCYSLEQAAEEAF 180
Query: 694 VNDIEESSPGTEWERVARLCDFNPKSSKQAKDVSRMRSVLISLKQAPLVH 843
VNDI+ESSPGTEWERVARLCDFNPKSSKQAKDVSRMRSVLISLKQAPLVH
Sbjct: 181 VNDIDESSPGTEWERVARLCDFNPKSSKQAKDVSRMRSVLISLKQAPLVH 230
>ref|XP_866761.1| PREDICTED: similar to Clathrin light chain A (Lca) isoform 2 [Canis
familiaris].
Length = 236
Score = 359 bits (921), Expect = 3e-99
Identities = 193/236 (81%), Positives = 196/236 (83%), Gaps = 24/236 (10%)
Frame = +1
Query: 208 MADLDPFGAPA----GPSLGNGVAG--EEDPAAAFLAQQESEIAGIENDEAFAILDXXXX 369
MA+LDPFGAPA GP+LGNGVAG EEDPAAAFLAQQESEIAGIENDEAFAILD
Sbjct: 1 MAELDPFGAPASAPGGPALGNGVAGAGEEDPAAAFLAQQESEIAGIENDEAFAILDGGAP 60
Query: 370 XXXXXXXXXXXXDAVDGVMNGEYYQESNGPTDSYAAISQVDRLQSEPESIRKWREEQTER 549
DAVDGVMNGEYYQESNGPTDSYAAISQVDRLQSEPESIRKWREEQTER
Sbjct: 61 GPQPHGEPPGVPDAVDGVMNGEYYQESNGPTDSYAAISQVDRLQSEPESIRKWREEQTER 120
Query: 550 LEALDANSRKQEAEWKEKAIKELEEWYARQDEQLQKTKANNR------------------ 675
LEALDANSRKQEAEWKEKAIKELEEWYARQDEQLQKTKANNR
Sbjct: 121 LEALDANSRKQEAEWKEKAIKELEEWYARQDEQLQKTKANNRVADEAFYKQPFADVIGYV 180
Query: 676 AAEEAFVNDIEESSPGTEWERVARLCDFNPKSSKQAKDVSRMRSVLISLKQAPLVH 843
AAEEAFVNDI+ESSPGTEWERVARLCDFNPKSSKQAKDVSRMRSVLISLKQAPLVH
Sbjct: 181 AAEEAFVNDIDESSPGTEWERVARLCDFNPKSSKQAKDVSRMRSVLISLKQAPLVH 236
>ref|XP_531996.2| PREDICTED: similar to Clathrin light chain A (Lca) isoform 1 [Canis
familiaris].
Length = 248
Score = 354 bits (909), Expect = 8e-98
Identities = 193/248 (77%), Positives = 196/248 (79%), Gaps = 36/248 (14%)
Frame = +1
Query: 208 MADLDPFGAPA----GPSLGNGVAG--EEDPAAAFLAQQESEIAGIENDEAFAILDXXXX 369
MA+LDPFGAPA GP+LGNGVAG EEDPAAAFLAQQESEIAGIENDEAFAILD
Sbjct: 1 MAELDPFGAPASAPGGPALGNGVAGAGEEDPAAAFLAQQESEIAGIENDEAFAILDGGAP 60
Query: 370 XXXXXXXXXXXXDAVDGVMNGEYYQESNGPTDSYAAISQVDRLQSEPESIRKWREEQTER 549
DAVDGVMNGEYYQESNGPTDSYAAISQVDRLQSEPESIRKWREEQTER
Sbjct: 61 GPQPHGEPPGVPDAVDGVMNGEYYQESNGPTDSYAAISQVDRLQSEPESIRKWREEQTER 120
Query: 550 LEALDANSRKQEAEWKEKAIKELEEWYARQDEQLQKTKANNR------------------ 675
LEALDANSRKQEAEWKEKAIKELEEWYARQDEQLQKTKANNR
Sbjct: 121 LEALDANSRKQEAEWKEKAIKELEEWYARQDEQLQKTKANNRVADEAFYKQPFADVIGYV 180
Query: 676 ------------AAEEAFVNDIEESSPGTEWERVARLCDFNPKSSKQAKDVSRMRSVLIS 819
AAEEAFVNDI+ESSPGTEWERVARLCDFNPKSSKQAKDVSRMRSVLIS
Sbjct: 181 TNINHPCYSLEQAAEEAFVNDIDESSPGTEWERVARLCDFNPKSSKQAKDVSRMRSVLIS 240
Query: 820 LKQAPLVH 843
LKQAPLVH
Sbjct: 241 LKQAPLVH 248
>ref|XP_866835.1| PREDICTED: similar to clathrin, light polypeptide A isoform a
isoform 7 [Canis familiaris].
Length = 139
Score = 265 bits (678), Expect = 5e-71
Identities = 132/134 (98%), Positives = 134/134 (100%)
Frame = +1
Query: 442 QESNGPTDSYAAISQVDRLQSEPESIRKWREEQTERLEALDANSRKQEAEWKEKAIKELE 621
+ESNGPTDSYAAISQVDRLQSEPESIRKWREEQTERLEALDANSRKQEAEWKEKAIKELE
Sbjct: 6 RESNGPTDSYAAISQVDRLQSEPESIRKWREEQTERLEALDANSRKQEAEWKEKAIKELE 65
Query: 622 EWYARQDEQLQKTKANNRAAEEAFVNDIEESSPGTEWERVARLCDFNPKSSKQAKDVSRM 801
EWYARQDEQLQKTKANNRAAEEAFVNDI+ESSPGTEWERVARLCDFNPKSSKQAKDVSRM
Sbjct: 66 EWYARQDEQLQKTKANNRAAEEAFVNDIDESSPGTEWERVARLCDFNPKSSKQAKDVSRM 125
Query: 802 RSVLISLKQAPLVH 843
RSVLISLKQAPLVH
Sbjct: 126 RSVLISLKQAPLVH 139
>ref|XP_866066.1| PREDICTED: similar to clathrin, light polypeptide isoform a isoform
3 [Canis familiaris].
Length = 207
Score = 242 bits (618), Expect = 4e-64
Identities = 124/206 (60%), Positives = 149/206 (72%)
Frame = +1
Query: 220 DPFGAPAGPSLGNGVAGEEDPAAAFLAQQESEIAGIENDEAFAILDXXXXXXXXXXXXXX 399
D FG + G A EEDPAAAFLAQQESEIAGIENDE F + +
Sbjct: 3 DDFGFFSSSESGAPEAAEEDPAAAFLAQQESEIAGIENDEGFGLSNGYCHVFVLSLAGS- 61
Query: 400 XXDAVDGVMNGEYYQESNGPTDSYAAISQVDRLQSEPESIRKWREEQTERLEALDANSRK 579
+ + +NG+ +QE+NGP D YAAI+Q DRL EPESIRKWREEQ +RL+ LDA S+
Sbjct: 62 --EDMGTTINGDVFQEANGPADGYAAIAQADRLTQEPESIRKWREEQRKRLQELDAASKV 119
Query: 580 QEAEWKEKAIKELEEWYARQDEQLQKTKANNRAAEEAFVNDIEESSPGTEWERVARLCDF 759
E EW+EKA K+LEEW RQ EQ++K K NNRA+EEAFV + +E +PGTEWE+VA+LCDF
Sbjct: 120 TEQEWREKAKKDLEEWNQRQSEQVEKNKINNRASEEAFVKESKEETPGTEWEKVAQLCDF 179
Query: 760 NPKSSKQAKDVSRMRSVLISLKQAPL 837
NPKSSKQ KDVSR+RSVL+SLKQ PL
Sbjct: 180 NPKSSKQCKDVSRLRSVLMSLKQTPL 205
>ref|XP_866115.1| PREDICTED: similar to clathrin, light polypeptide isoform a isoform
5 [Canis familiaris].
Length = 211
Score = 241 bits (615), Expect = 9e-64
Identities = 125/207 (60%), Positives = 148/207 (71%), Gaps = 1/207 (0%)
Frame = +1
Query: 220 DPFGAPAGPSLGNGVAGEEDPAAAFLAQQESEIAGIENDEAF-AILDXXXXXXXXXXXXX 396
D FG + G A EEDPAAAFLAQQESEIAGIENDE F A
Sbjct: 3 DDFGFFSSSESGAPEAAEEDPAAAFLAQQESEIAGIENDEGFGAPAGSHAALAQPGPAGG 62
Query: 397 XXXDAVDGVMNGEYYQESNGPTDSYAAISQVDRLQSEPESIRKWREEQTERLEALDANSR 576
+ + +NG+ +QE+NGP D YAAI+Q DRL EPESIRKWREEQ +RL+ LDA S+
Sbjct: 63 AGSEDMGTTINGDVFQEANGPADGYAAIAQADRLTQEPESIRKWREEQRKRLQELDAASK 122
Query: 577 KQEAEWKEKAIKELEEWYARQDEQLQKTKANNRAAEEAFVNDIEESSPGTEWERVARLCD 756
E EW+EKA K+LEEW RQ EQ++K K NNRA+EEAFV + +E +PGTEWE+VA+LCD
Sbjct: 123 VTEQEWREKAKKDLEEWNQRQSEQVEKNKINNRASEEAFVKESKEETPGTEWEKVAQLCD 182
Query: 757 FNPKSSKQAKDVSRMRSVLISLKQAPL 837
FNPKSSKQ KDVSR+RSVL+SLKQ PL
Sbjct: 183 FNPKSSKQCKDVSRLRSVLMSLKQTPL 209
>ref|XP_866083.1| PREDICTED: similar to clathrin, light polypeptide isoform a isoform
4 [Canis familiaris].
Length = 213
Score = 239 bits (611), Expect = 3e-63
Identities = 125/209 (59%), Positives = 148/209 (70%), Gaps = 3/209 (1%)
Frame = +1
Query: 220 DPFGAPAGPSLGNGVAGEEDPAAAFLAQQESEIAGIENDEAF---AILDXXXXXXXXXXX 390
D FG + G A EEDPAAAFLAQQESEIAGIENDE F A
Sbjct: 3 DDFGFFSSSESGAPEAAEEDPAAAFLAQQESEIAGIENDEGFGAPAGSHAALAHASACPP 62
Query: 391 XXXXXDAVDGVMNGEYYQESNGPTDSYAAISQVDRLQSEPESIRKWREEQTERLEALDAN 570
+ + +NG+ +QE+NGP D YAAI+Q DRL EPESIRKWREEQ +RL+ LDA
Sbjct: 63 STAGSEDMGTTINGDVFQEANGPADGYAAIAQADRLTQEPESIRKWREEQRKRLQELDAA 122
Query: 571 SRKQEAEWKEKAIKELEEWYARQDEQLQKTKANNRAAEEAFVNDIEESSPGTEWERVARL 750
S+ E EW+EKA K+LEEW RQ EQ++K K NNRA+EEAFV + +E +PGTEWE+VA+L
Sbjct: 123 SKVTEQEWREKAKKDLEEWNQRQSEQVEKNKINNRASEEAFVKESKEETPGTEWEKVAQL 182
Query: 751 CDFNPKSSKQAKDVSRMRSVLISLKQAPL 837
CDFNPKSSKQ KDVSR+RSVL+SLKQ PL
Sbjct: 183 CDFNPKSSKQCKDVSRLRSVLMSLKQTPL 211
>ref|XP_866050.1| PREDICTED: similar to clathrin, light polypeptide isoform a isoform
2 [Canis familiaris].
Length = 208
Score = 239 bits (611), Expect = 3e-63
Identities = 124/206 (60%), Positives = 146/206 (70%)
Frame = +1
Query: 220 DPFGAPAGPSLGNGVAGEEDPAAAFLAQQESEIAGIENDEAFAILDXXXXXXXXXXXXXX 399
D FG + G A EEDPAAAFLAQQESEIAGIENDE F
Sbjct: 3 DDFGFFSSSESGAPEAAEEDPAAAFLAQQESEIAGIENDEGFGA--PAGNSGEEEGPRYG 60
Query: 400 XXDAVDGVMNGEYYQESNGPTDSYAAISQVDRLQSEPESIRKWREEQTERLEALDANSRK 579
+ +NG+ +QE+NGP D YAAI+Q DRL EPESIRKWREEQ +RL+ LDA S+
Sbjct: 61 PLGDMGTTINGDVFQEANGPADGYAAIAQADRLTQEPESIRKWREEQRKRLQELDAASKV 120
Query: 580 QEAEWKEKAIKELEEWYARQDEQLQKTKANNRAAEEAFVNDIEESSPGTEWERVARLCDF 759
E EW+EKA K+LEEW RQ EQ++K K NNRA+EEAFV + +E +PGTEWE+VA+LCDF
Sbjct: 121 TEQEWREKAKKDLEEWNQRQSEQVEKNKINNRASEEAFVKESKEETPGTEWEKVAQLCDF 180
Query: 760 NPKSSKQAKDVSRMRSVLISLKQAPL 837
NPKSSKQ KDVSR+RSVL+SLKQ PL
Sbjct: 181 NPKSSKQCKDVSRLRSVLMSLKQTPL 206
>ref|XP_866801.1| PREDICTED: similar to Clathrin light chain A (Lca) isoform 4 [Canis
familiaris].
Length = 178
Score = 236 bits (601), Expect = 4e-62
Identities = 144/230 (62%), Positives = 150/230 (65%), Gaps = 18/230 (7%)
Frame = +1
Query: 208 MADLDPFGAPA----GPSLGNGVAG--EEDPAAAFLAQQESEIAGIENDEAFAILDXXXX 369
MA+LDPFGAPA GP+LGNGVAG EEDPAAAFLAQQESEIAGIENDEAFAIL
Sbjct: 1 MAELDPFGAPASAPGGPALGNGVAGAGEEDPAAAFLAQQESEIAGIENDEAFAIL----- 55
Query: 370 XXXXXXXXXXXXDAVDGVMNGEYYQESNGPTDSYAAISQVDRLQSEPESIRKWREEQTER 549
DG G + EP +
Sbjct: 56 ---------------DGGAPGP-------------------QPHGEPPGVP--------- 72
Query: 550 LEALDANSRKQEAEWKEKAIKELEEWYARQDEQLQKTKANN------------RAAEEAF 693
DANSRKQEAEWKEKAIKELEEWYARQDEQLQKTKANN +AAEEAF
Sbjct: 73 ----DANSRKQEAEWKEKAIKELEEWYARQDEQLQKTKANNSTNINHPCYSLEQAAEEAF 128
Query: 694 VNDIEESSPGTEWERVARLCDFNPKSSKQAKDVSRMRSVLISLKQAPLVH 843
VNDI+ESSPGTEWERVARLCDFNPKSSKQAKDVSRMRSVLISLKQAPLVH
Sbjct: 129 VNDIDESSPGTEWERVARLCDFNPKSSKQAKDVSRMRSVLISLKQAPLVH 178
Database: RefSeq44_CP.fasta
Posted date: Nov 15, 2010 4:36 PM
Number of letters in database: 18,921,627
Number of sequences in database: 33,359
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33359
Number of Hits to DB: 36,125,923
Number of extensions: 834548
Number of successful extensions: 4325
Number of sequences better than 1.0e-05: 13
Number of HSP's gapped: 4240
Number of HSP's successfully gapped: 14
Length of query: 381
Length of database: 18,921,627
Length adjustment: 105
Effective length of query: 276
Effective length of database: 15,418,932
Effective search space: 4255625232
Effective search space used: 4255625232
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel44
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20070806C-008059
(1143 letters)
Database: RefSeq44_HP.fasta
33,950 sequences; 18,324,212 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001824.1| clathrin light chain A isoform a [Homo sapiens]. 368 e-102
Alignment gi|NP_001171689.1| clathrin light chain A isoform d [Homo sapie... 357 9e-99
Alignment gi|NP_001070145.1| clathrin light chain A isoform c [Homo sapie... 357 1e-98
Alignment gi|NP_009027.1| clathrin light chain A isoform b [Homo sapiens]. 352 4e-97
Alignment gi|NP_001171690.1| clathrin light chain A isoform e [Homo sapie... 258 7e-69
Alignment gi|NP_001825.1| clathrin light chain B isoform a [Homo sapiens]. 241 9e-64
Alignment gi|NP_009028.1| clathrin light chain B isoform b [Homo sapiens]. 230 2e-60
Alignment gi|NP_001171691.1| clathrin light chain A isoform f [Homo sapie... 225 5e-59
>ref|NP_001824.1| clathrin light chain A isoform a [Homo sapiens].
Length = 218
Score = 368 bits (944), Expect = e-102
Identities = 192/218 (88%), Positives = 195/218 (89%), Gaps = 6/218 (2%)
Frame = +1
Query: 208 MADLDPFGAPAG----PSLGNGVAG--EEDPAAAFLAQQESEIAGIENDEAFAILDXXXX 369
MA+LDPFGAPAG P+LGNGVAG EEDPAAAFLAQQESEIAGIENDEAFAILD
Sbjct: 1 MAELDPFGAPAGAPGGPALGNGVAGAGEEDPAAAFLAQQESEIAGIENDEAFAILDGGAP 60
Query: 370 XXXXXXXXXXXXDAVDGVMNGEYYQESNGPTDSYAAISQVDRLQSEPESIRKWREEQTER 549
DAVDGVMNGEYYQESNGPTDSYAAISQVDRLQSEPESIRKWREEQ ER
Sbjct: 61 GPQPHGEPPGGPDAVDGVMNGEYYQESNGPTDSYAAISQVDRLQSEPESIRKWREEQMER 120
Query: 550 LEALDANSRKQEAEWKEKAIKELEEWYARQDEQLQKTKANNRAAEEAFVNDIEESSPGTE 729
LEALDANSRKQEAEWKEKAIKELEEWYARQDEQLQKTKANNRAAEEAFVNDI+ESSPGTE
Sbjct: 121 LEALDANSRKQEAEWKEKAIKELEEWYARQDEQLQKTKANNRAAEEAFVNDIDESSPGTE 180
Query: 730 WERVARLCDFNPKSSKQAKDVSRMRSVLISLKQAPLVH 843
WERVARLCDFNPKSSKQAKDVSRMRSVLISLKQAPLVH
Sbjct: 181 WERVARLCDFNPKSSKQAKDVSRMRSVLISLKQAPLVH 218
>ref|NP_001171689.1| clathrin light chain A isoform d [Homo sapiens].
Length = 230
Score = 357 bits (917), Expect = 9e-99
Identities = 191/230 (83%), Positives = 195/230 (84%), Gaps = 18/230 (7%)
Frame = +1
Query: 208 MADLDPFGAPAG----PSLGNGVAG--EEDPAAAFLAQQESEIAGIENDEAFAILDXXXX 369
MA+LDPFGAPAG P+LGNGVAG EEDPAAAFLAQQESEIAGIENDEAFAILD
Sbjct: 1 MAELDPFGAPAGAPGGPALGNGVAGAGEEDPAAAFLAQQESEIAGIENDEAFAILDGGAP 60
Query: 370 XXXXXXXXXXXXDAVDGVMNGEYYQESNGPTDSYAAISQVDRLQSEPESIRKWREEQTER 549
DAVDGVMNGEYYQESNGPTDSYAAISQVDRLQSEPESIRKWREEQ ER
Sbjct: 61 GPQPHGEPPGGPDAVDGVMNGEYYQESNGPTDSYAAISQVDRLQSEPESIRKWREEQMER 120
Query: 550 LEALDANSRKQEAEWKEKAIKELEEWYARQDEQLQKTKANN------------RAAEEAF 693
LEALDANSRKQEAEWKEKAIKELEEWYARQDEQLQKTKANN +AAEEAF
Sbjct: 121 LEALDANSRKQEAEWKEKAIKELEEWYARQDEQLQKTKANNSTNINHPCYSLEQAAEEAF 180
Query: 694 VNDIEESSPGTEWERVARLCDFNPKSSKQAKDVSRMRSVLISLKQAPLVH 843
VNDI+ESSPGTEWERVARLCDFNPKSSKQAKDVSRMRSVLISLKQAPLVH
Sbjct: 181 VNDIDESSPGTEWERVARLCDFNPKSSKQAKDVSRMRSVLISLKQAPLVH 230
>ref|NP_001070145.1| clathrin light chain A isoform c [Homo sapiens].
Length = 236
Score = 357 bits (915), Expect = 1e-98
Identities = 192/236 (81%), Positives = 195/236 (82%), Gaps = 24/236 (10%)
Frame = +1
Query: 208 MADLDPFGAPAG----PSLGNGVAG--EEDPAAAFLAQQESEIAGIENDEAFAILDXXXX 369
MA+LDPFGAPAG P+LGNGVAG EEDPAAAFLAQQESEIAGIENDEAFAILD
Sbjct: 1 MAELDPFGAPAGAPGGPALGNGVAGAGEEDPAAAFLAQQESEIAGIENDEAFAILDGGAP 60
Query: 370 XXXXXXXXXXXXDAVDGVMNGEYYQESNGPTDSYAAISQVDRLQSEPESIRKWREEQTER 549
DAVDGVMNGEYYQESNGPTDSYAAISQVDRLQSEPESIRKWREEQ ER
Sbjct: 61 GPQPHGEPPGGPDAVDGVMNGEYYQESNGPTDSYAAISQVDRLQSEPESIRKWREEQMER 120
Query: 550 LEALDANSRKQEAEWKEKAIKELEEWYARQDEQLQKTKANNR------------------ 675
LEALDANSRKQEAEWKEKAIKELEEWYARQDEQLQKTKANNR
Sbjct: 121 LEALDANSRKQEAEWKEKAIKELEEWYARQDEQLQKTKANNRVADEAFYKQPFADVIGYV 180
Query: 676 AAEEAFVNDIEESSPGTEWERVARLCDFNPKSSKQAKDVSRMRSVLISLKQAPLVH 843
AAEEAFVNDI+ESSPGTEWERVARLCDFNPKSSKQAKDVSRMRSVLISLKQAPLVH
Sbjct: 181 AAEEAFVNDIDESSPGTEWERVARLCDFNPKSSKQAKDVSRMRSVLISLKQAPLVH 236
>ref|NP_009027.1| clathrin light chain A isoform b [Homo sapiens].
Length = 248
Score = 352 bits (903), Expect = 4e-97
Identities = 192/248 (77%), Positives = 195/248 (78%), Gaps = 36/248 (14%)
Frame = +1
Query: 208 MADLDPFGAPAG----PSLGNGVAG--EEDPAAAFLAQQESEIAGIENDEAFAILDXXXX 369
MA+LDPFGAPAG P+LGNGVAG EEDPAAAFLAQQESEIAGIENDEAFAILD
Sbjct: 1 MAELDPFGAPAGAPGGPALGNGVAGAGEEDPAAAFLAQQESEIAGIENDEAFAILDGGAP 60
Query: 370 XXXXXXXXXXXXDAVDGVMNGEYYQESNGPTDSYAAISQVDRLQSEPESIRKWREEQTER 549
DAVDGVMNGEYYQESNGPTDSYAAISQVDRLQSEPESIRKWREEQ ER
Sbjct: 61 GPQPHGEPPGGPDAVDGVMNGEYYQESNGPTDSYAAISQVDRLQSEPESIRKWREEQMER 120
Query: 550 LEALDANSRKQEAEWKEKAIKELEEWYARQDEQLQKTKANNR------------------ 675
LEALDANSRKQEAEWKEKAIKELEEWYARQDEQLQKTKANNR
Sbjct: 121 LEALDANSRKQEAEWKEKAIKELEEWYARQDEQLQKTKANNRVADEAFYKQPFADVIGYV 180
Query: 676 ------------AAEEAFVNDIEESSPGTEWERVARLCDFNPKSSKQAKDVSRMRSVLIS 819
AAEEAFVNDI+ESSPGTEWERVARLCDFNPKSSKQAKDVSRMRSVLIS
Sbjct: 181 TNINHPCYSLEQAAEEAFVNDIDESSPGTEWERVARLCDFNPKSSKQAKDVSRMRSVLIS 240
Query: 820 LKQAPLVH 843
LKQAPLVH
Sbjct: 241 LKQAPLVH 248
>ref|NP_001171690.1| clathrin light chain A isoform e [Homo sapiens].
Length = 168
Score = 258 bits (659), Expect = 7e-69
Identities = 136/161 (84%), Positives = 138/161 (85%), Gaps = 6/161 (3%)
Frame = +1
Query: 208 MADLDPFGAPAG----PSLGNGVAG--EEDPAAAFLAQQESEIAGIENDEAFAILDXXXX 369
MA+LDPFGAPAG P+LGNGVAG EEDPAAAFLAQQESEIAGIENDEAFAILD
Sbjct: 1 MAELDPFGAPAGAPGGPALGNGVAGAGEEDPAAAFLAQQESEIAGIENDEAFAILDGGAP 60
Query: 370 XXXXXXXXXXXXDAVDGVMNGEYYQESNGPTDSYAAISQVDRLQSEPESIRKWREEQTER 549
DAVDGVMNGEYYQESNGPTDSYAAISQVDRLQSEPESIRKWREEQ ER
Sbjct: 61 GPQPHGEPPGGPDAVDGVMNGEYYQESNGPTDSYAAISQVDRLQSEPESIRKWREEQMER 120
Query: 550 LEALDANSRKQEAEWKEKAIKELEEWYARQDEQLQKTKANN 672
LEALDANSRKQEAEWKEKAIKELEEWYARQDEQLQKTKANN
Sbjct: 121 LEALDANSRKQEAEWKEKAIKELEEWYARQDEQLQKTKANN 161
>ref|NP_001825.1| clathrin light chain B isoform a [Homo sapiens].
Length = 211
Score = 241 bits (615), Expect = 9e-64
Identities = 125/207 (60%), Positives = 148/207 (71%), Gaps = 1/207 (0%)
Frame = +1
Query: 220 DPFGAPAGPSLGNGVAGEEDPAAAFLAQQESEIAGIENDEAF-AILDXXXXXXXXXXXXX 396
D FG + G A EEDPAAAFLAQQESEIAGIENDE F A
Sbjct: 3 DDFGFFSSSESGAPEAAEEDPAAAFLAQQESEIAGIENDEGFGAPAGSHAAPAQPGPTSG 62
Query: 397 XXXDAVDGVMNGEYYQESNGPTDSYAAISQVDRLQSEPESIRKWREEQTERLEALDANSR 576
+ + +NG+ +QE+NGP D YAAI+Q DRL EPESIRKWREEQ +RL+ LDA S+
Sbjct: 63 AGSEDMGTTVNGDVFQEANGPADGYAAIAQADRLTQEPESIRKWREEQRKRLQELDAASK 122
Query: 577 KQEAEWKEKAIKELEEWYARQDEQLQKTKANNRAAEEAFVNDIEESSPGTEWERVARLCD 756
E EW+EKA K+LEEW RQ EQ++K K NNRA+EEAFV + +E +PGTEWE+VA+LCD
Sbjct: 123 VTEQEWREKAKKDLEEWNQRQSEQVEKNKINNRASEEAFVKESKEETPGTEWEKVAQLCD 182
Query: 757 FNPKSSKQAKDVSRMRSVLISLKQAPL 837
FNPKSSKQ KDVSR+RSVL+SLKQ PL
Sbjct: 183 FNPKSSKQCKDVSRLRSVLMSLKQTPL 209
>ref|NP_009028.1| clathrin light chain B isoform b [Homo sapiens].
Length = 229
Score = 230 bits (586), Expect = 2e-60
Identities = 125/225 (55%), Positives = 148/225 (65%), Gaps = 19/225 (8%)
Frame = +1
Query: 220 DPFGAPAGPSLGNGVAGEEDPAAAFLAQQESEIAGIENDEAF-AILDXXXXXXXXXXXXX 396
D FG + G A EEDPAAAFLAQQESEIAGIENDE F A
Sbjct: 3 DDFGFFSSSESGAPEAAEEDPAAAFLAQQESEIAGIENDEGFGAPAGSHAAPAQPGPTSG 62
Query: 397 XXXDAVDGVMNGEYYQESNGPTDSYAAISQVDRLQSEPESIRKWREEQTERLEALDANSR 576
+ + +NG+ +QE+NGP D YAAI+Q DRL EPESIRKWREEQ +RL+ LDA S+
Sbjct: 63 AGSEDMGTTVNGDVFQEANGPADGYAAIAQADRLTQEPESIRKWREEQRKRLQELDAASK 122
Query: 577 KQEAEWKEKAIKELEEWYARQDEQLQKTKANNR------------------AAEEAFVND 702
E EW+EKA K+LEEW RQ EQ++K K NNR A+EEAFV +
Sbjct: 123 VTEQEWREKAKKDLEEWNQRQSEQVEKNKINNRIADKAFYQQPDADIIGYVASEEAFVKE 182
Query: 703 IEESSPGTEWERVARLCDFNPKSSKQAKDVSRMRSVLISLKQAPL 837
+E +PGTEWE+VA+LCDFNPKSSKQ KDVSR+RSVL+SLKQ PL
Sbjct: 183 SKEETPGTEWEKVAQLCDFNPKSSKQCKDVSRLRSVLMSLKQTPL 227
>ref|NP_001171691.1| clathrin light chain A isoform f [Homo sapiens].
Length = 166
Score = 225 bits (574), Expect = 5e-59
Identities = 135/218 (61%), Positives = 142/218 (65%), Gaps = 6/218 (2%)
Frame = +1
Query: 208 MADLDPFGAPAG----PSLGNGVAG--EEDPAAAFLAQQESEIAGIENDEAFAILDXXXX 369
MA+LDPFGAPAG P+LGNGVAG EEDPAAAFLAQQESEIA
Sbjct: 1 MAELDPFGAPAGAPGGPALGNGVAGAGEEDPAAAFLAQQESEIA---------------- 44
Query: 370 XXXXXXXXXXXXDAVDGVMNGEYYQESNGPTDSYAAISQVDRLQSEPESIRKWREEQTER 549
G+ N E + +G + EP
Sbjct: 45 ----------------GIENDEAFAILDGGAPG-------PQPHGEPPG----------- 70
Query: 550 LEALDANSRKQEAEWKEKAIKELEEWYARQDEQLQKTKANNRAAEEAFVNDIEESSPGTE 729
DANSRKQEAEWKEKAIKELEEWYARQDEQLQKTKANNRAAEEAFVNDI+ESSPGTE
Sbjct: 71 --GPDANSRKQEAEWKEKAIKELEEWYARQDEQLQKTKANNRAAEEAFVNDIDESSPGTE 128
Query: 730 WERVARLCDFNPKSSKQAKDVSRMRSVLISLKQAPLVH 843
WERVARLCDFNPKSSKQAKDVSRMRSVLISLKQAPLVH
Sbjct: 129 WERVARLCDFNPKSSKQAKDVSRMRSVLISLKQAPLVH 166
Database: RefSeq44_HP.fasta
Posted date: Nov 15, 2010 4:36 PM
Number of letters in database: 18,324,212
Number of sequences in database: 33,950
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33950
Number of Hits to DB: 35,555,317
Number of extensions: 828679
Number of successful extensions: 4167
Number of sequences better than 1.0e-05: 8
Number of HSP's gapped: 4059
Number of HSP's successfully gapped: 9
Length of query: 381
Length of database: 18,324,212
Length adjustment: 104
Effective length of query: 277
Effective length of database: 14,793,412
Effective search space: 4097775124
Effective search space used: 4097775124
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel44
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20070806C-008059
(1143 letters)
Database: RefSeq44_MP.fasta
29,866 sequences; 15,452,059 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001073853.1| clathrin light chain A isoform a [Mus muscul... 369 e-102
Alignment gi|NP_001073855.1| clathrin light chain A isoform d [Mus muscul... 365 e-101
Alignment gi|NP_058040.2| clathrin light chain A isoform c [Mus musculus]. 358 6e-99
Alignment gi|NP_001073854.1| clathrin light chain A isoform b [Mus muscul... 353 1e-97
Alignment gi|NP_083146.1| clathrin light chain B [Mus musculus]. 237 1e-62
>ref|NP_001073853.1| clathrin light chain A isoform a [Mus musculus].
Length = 218
Score = 369 bits (947), Expect = e-102
Identities = 192/218 (88%), Positives = 196/218 (89%), Gaps = 6/218 (2%)
Frame = +1
Query: 208 MADLDPFGAPAG----PSLGNGVAG--EEDPAAAFLAQQESEIAGIENDEAFAILDXXXX 369
MA+LDPFGAPAG P+LGNGVAG EEDPAAAFLAQQESEIAGIENDEAFAILD
Sbjct: 1 MAELDPFGAPAGAPGGPALGNGVAGAGEEDPAAAFLAQQESEIAGIENDEAFAILDGGAP 60
Query: 370 XXXXXXXXXXXXDAVDGVMNGEYYQESNGPTDSYAAISQVDRLQSEPESIRKWREEQTER 549
DAVDGVMNGEYYQESNGPTDSYAAIS+VDRLQSEPESIRKWREEQTER
Sbjct: 61 GPQPHGEPPGGPDAVDGVMNGEYYQESNGPTDSYAAISEVDRLQSEPESIRKWREEQTER 120
Query: 550 LEALDANSRKQEAEWKEKAIKELEEWYARQDEQLQKTKANNRAAEEAFVNDIEESSPGTE 729
LEALDANSRKQEAEWKEKAIKELEEWYARQDEQLQKTKANNRAAEEAFVNDI+ESSPGTE
Sbjct: 121 LEALDANSRKQEAEWKEKAIKELEEWYARQDEQLQKTKANNRAAEEAFVNDIDESSPGTE 180
Query: 730 WERVARLCDFNPKSSKQAKDVSRMRSVLISLKQAPLVH 843
WERVARLCDFNPKSSKQAKDVSRMRSVLISLKQAPLVH
Sbjct: 181 WERVARLCDFNPKSSKQAKDVSRMRSVLISLKQAPLVH 218
>ref|NP_001073855.1| clathrin light chain A isoform d [Mus musculus].
Length = 216
Score = 365 bits (936), Expect = e-101
Identities = 192/218 (88%), Positives = 196/218 (89%), Gaps = 6/218 (2%)
Frame = +1
Query: 208 MADLDPFGAPAG----PSLGNGVAG--EEDPAAAFLAQQESEIAGIENDEAFAILDXXXX 369
MA+LDPFGAPAG P+LGNGVAG EEDPAAAFLAQQESEIAGIENDEAFAILD
Sbjct: 1 MAELDPFGAPAGAPGGPALGNGVAGAGEEDPAAAFLAQQESEIAGIENDEAFAILDGGAP 60
Query: 370 XXXXXXXXXXXXDAVDGVMNGEYYQESNGPTDSYAAISQVDRLQSEPESIRKWREEQTER 549
DAVDGVMNGEYYQESNGPTDSYAAIS+VDRLQSEPESIRKWREEQTER
Sbjct: 61 GPQPHGEPPG--DAVDGVMNGEYYQESNGPTDSYAAISEVDRLQSEPESIRKWREEQTER 118
Query: 550 LEALDANSRKQEAEWKEKAIKELEEWYARQDEQLQKTKANNRAAEEAFVNDIEESSPGTE 729
LEALDANSRKQEAEWKEKAIKELEEWYARQDEQLQKTKANNRAAEEAFVNDI+ESSPGTE
Sbjct: 119 LEALDANSRKQEAEWKEKAIKELEEWYARQDEQLQKTKANNRAAEEAFVNDIDESSPGTE 178
Query: 730 WERVARLCDFNPKSSKQAKDVSRMRSVLISLKQAPLVH 843
WERVARLCDFNPKSSKQAKDVSRMRSVLISLKQAPLVH
Sbjct: 179 WERVARLCDFNPKSSKQAKDVSRMRSVLISLKQAPLVH 216
>ref|NP_058040.2| clathrin light chain A isoform c [Mus musculus].
Length = 236
Score = 358 bits (918), Expect = 6e-99
Identities = 192/236 (81%), Positives = 196/236 (83%), Gaps = 24/236 (10%)
Frame = +1
Query: 208 MADLDPFGAPAG----PSLGNGVAG--EEDPAAAFLAQQESEIAGIENDEAFAILDXXXX 369
MA+LDPFGAPAG P+LGNGVAG EEDPAAAFLAQQESEIAGIENDEAFAILD
Sbjct: 1 MAELDPFGAPAGAPGGPALGNGVAGAGEEDPAAAFLAQQESEIAGIENDEAFAILDGGAP 60
Query: 370 XXXXXXXXXXXXDAVDGVMNGEYYQESNGPTDSYAAISQVDRLQSEPESIRKWREEQTER 549
DAVDGVMNGEYYQESNGPTDSYAAIS+VDRLQSEPESIRKWREEQTER
Sbjct: 61 GPQPHGEPPGGPDAVDGVMNGEYYQESNGPTDSYAAISEVDRLQSEPESIRKWREEQTER 120
Query: 550 LEALDANSRKQEAEWKEKAIKELEEWYARQDEQLQKTKANNR------------------ 675
LEALDANSRKQEAEWKEKAIKELEEWYARQDEQLQKTKANNR
Sbjct: 121 LEALDANSRKQEAEWKEKAIKELEEWYARQDEQLQKTKANNRVADEAFYKQPFADLIGYV 180
Query: 676 AAEEAFVNDIEESSPGTEWERVARLCDFNPKSSKQAKDVSRMRSVLISLKQAPLVH 843
AAEEAFVNDI+ESSPGTEWERVARLCDFNPKSSKQAKDVSRMRSVLISLKQAPLVH
Sbjct: 181 AAEEAFVNDIDESSPGTEWERVARLCDFNPKSSKQAKDVSRMRSVLISLKQAPLVH 236
>ref|NP_001073854.1| clathrin light chain A isoform b [Mus musculus].
Length = 248
Score = 353 bits (906), Expect = 1e-97
Identities = 192/248 (77%), Positives = 196/248 (79%), Gaps = 36/248 (14%)
Frame = +1
Query: 208 MADLDPFGAPAG----PSLGNGVAG--EEDPAAAFLAQQESEIAGIENDEAFAILDXXXX 369
MA+LDPFGAPAG P+LGNGVAG EEDPAAAFLAQQESEIAGIENDEAFAILD
Sbjct: 1 MAELDPFGAPAGAPGGPALGNGVAGAGEEDPAAAFLAQQESEIAGIENDEAFAILDGGAP 60
Query: 370 XXXXXXXXXXXXDAVDGVMNGEYYQESNGPTDSYAAISQVDRLQSEPESIRKWREEQTER 549
DAVDGVMNGEYYQESNGPTDSYAAIS+VDRLQSEPESIRKWREEQTER
Sbjct: 61 GPQPHGEPPGGPDAVDGVMNGEYYQESNGPTDSYAAISEVDRLQSEPESIRKWREEQTER 120
Query: 550 LEALDANSRKQEAEWKEKAIKELEEWYARQDEQLQKTKANNR------------------ 675
LEALDANSRKQEAEWKEKAIKELEEWYARQDEQLQKTKANNR
Sbjct: 121 LEALDANSRKQEAEWKEKAIKELEEWYARQDEQLQKTKANNRVADEAFYKQPFADLIGYV 180
Query: 676 ------------AAEEAFVNDIEESSPGTEWERVARLCDFNPKSSKQAKDVSRMRSVLIS 819
AAEEAFVNDI+ESSPGTEWERVARLCDFNPKSSKQAKDVSRMRSVLIS
Sbjct: 181 TNINHPCYSLEQAAEEAFVNDIDESSPGTEWERVARLCDFNPKSSKQAKDVSRMRSVLIS 240
Query: 820 LKQAPLVH 843
LKQAPLVH
Sbjct: 241 LKQAPLVH 248
>ref|NP_083146.1| clathrin light chain B [Mus musculus].
Length = 211
Score = 237 bits (605), Expect = 1e-62
Identities = 123/207 (59%), Positives = 147/207 (71%), Gaps = 1/207 (0%)
Frame = +1
Query: 220 DPFGAPAGPSLGNGVAGEEDPAAAFLAQQESEIAGIENDEAF-AILDXXXXXXXXXXXXX 396
+ FG + G A EEDPAAAFLAQQESEIAGIEND F A
Sbjct: 3 EDFGFFSSSESGAPEAAEEDPAAAFLAQQESEIAGIENDPGFGAPAASQVASAQPGLASG 62
Query: 397 XXXDAVDGVMNGEYYQESNGPTDSYAAISQVDRLQSEPESIRKWREEQTERLEALDANSR 576
+ + +NG+ +QE+NGP D YAAI+Q DRL EPESIRKWREEQ +RL+ LDA S+
Sbjct: 63 AGSEDMSTTVNGDVFQEANGPADGYAAIAQADRLTQEPESIRKWREEQKKRLQELDAASK 122
Query: 577 KQEAEWKEKAIKELEEWYARQDEQLQKTKANNRAAEEAFVNDIEESSPGTEWERVARLCD 756
E EW+EKA K+LEEW RQ EQ++K K NNRA+EEAFV + +E +PGTEWE+VA+LCD
Sbjct: 123 VTEQEWREKAKKDLEEWNQRQSEQVEKNKINNRASEEAFVKESKEETPGTEWEKVAQLCD 182
Query: 757 FNPKSSKQAKDVSRMRSVLISLKQAPL 837
FNPKSSKQ KDVSR+RSVL+SLKQ PL
Sbjct: 183 FNPKSSKQCKDVSRLRSVLMSLKQTPL 209
Database: RefSeq44_MP.fasta
Posted date: Nov 15, 2010 4:36 PM
Number of letters in database: 15,452,059
Number of sequences in database: 29,866
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 29866
Number of Hits to DB: 29,585,838
Number of extensions: 677030
Number of successful extensions: 3203
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 3148
Number of HSP's successfully gapped: 5
Length of query: 381
Length of database: 15,452,059
Length adjustment: 103
Effective length of query: 278
Effective length of database: 12,375,861
Effective search space: 3440489358
Effective search space used: 3440489358
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel44
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20070806C-008059
(1143 letters)
Database: RefSeq44_SP.fasta
20,576 sequences; 9,542,844 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003122048.1| PREDICTED: clathrin light chain A isoform 1 ... 385 e-107
Alignment gi|XP_003122049.1| PREDICTED: clathrin light chain A isoform 2 ... 374 e-104
Alignment gi|XP_003122050.1| PREDICTED: clathrin light chain A isoform 3 ... 374 e-104
Alignment gi|XP_003122051.1| PREDICTED: clathrin light chain A isoform 4 ... 369 e-102
Alignment gi|XP_003123718.1| PREDICTED: clathrin light chain B-like [Sus ... 160 1e-39
>ref|XP_003122048.1| PREDICTED: clathrin light chain A isoform 1 [Sus scrofa].
Length = 212
Score = 385 bits (988), Expect = e-107
Identities = 196/212 (92%), Positives = 196/212 (92%)
Frame = +1
Query: 208 MADLDPFGAPAGPSLGNGVAGEEDPAAAFLAQQESEIAGIENDEAFAILDXXXXXXXXXX 387
MADLDPFGAPAGPSLGNGVAGEEDPAAAFLAQQESEIAGIENDEAFAILD
Sbjct: 1 MADLDPFGAPAGPSLGNGVAGEEDPAAAFLAQQESEIAGIENDEAFAILDGGAPGPQPHG 60
Query: 388 XXXXXXDAVDGVMNGEYYQESNGPTDSYAAISQVDRLQSEPESIRKWREEQTERLEALDA 567
DAVDGVMNGEYYQESNGPTDSYAAISQVDRLQSEPESIRKWREEQTERLEALDA
Sbjct: 61 EPPGGPDAVDGVMNGEYYQESNGPTDSYAAISQVDRLQSEPESIRKWREEQTERLEALDA 120
Query: 568 NSRKQEAEWKEKAIKELEEWYARQDEQLQKTKANNRAAEEAFVNDIEESSPGTEWERVAR 747
NSRKQEAEWKEKAIKELEEWYARQDEQLQKTKANNRAAEEAFVNDIEESSPGTEWERVAR
Sbjct: 121 NSRKQEAEWKEKAIKELEEWYARQDEQLQKTKANNRAAEEAFVNDIEESSPGTEWERVAR 180
Query: 748 LCDFNPKSSKQAKDVSRMRSVLISLKQAPLVH 843
LCDFNPKSSKQAKDVSRMRSVLISLKQAPLVH
Sbjct: 181 LCDFNPKSSKQAKDVSRMRSVLISLKQAPLVH 212
>ref|XP_003122049.1| PREDICTED: clathrin light chain A isoform 2 [Sus scrofa].
Length = 224
Score = 374 bits (961), Expect = e-104
Identities = 195/224 (87%), Positives = 196/224 (87%), Gaps = 12/224 (5%)
Frame = +1
Query: 208 MADLDPFGAPAGPSLGNGVAGEEDPAAAFLAQQESEIAGIENDEAFAILDXXXXXXXXXX 387
MADLDPFGAPAGPSLGNGVAGEEDPAAAFLAQQESEIAGIENDEAFAILD
Sbjct: 1 MADLDPFGAPAGPSLGNGVAGEEDPAAAFLAQQESEIAGIENDEAFAILDGGAPGPQPHG 60
Query: 388 XXXXXXDAVDGVMNGEYYQESNGPTDSYAAISQVDRLQSEPESIRKWREEQTERLEALDA 567
DAVDGVMNGEYYQESNGPTDSYAAISQVDRLQSEPESIRKWREEQTERLEALDA
Sbjct: 61 EPPGGPDAVDGVMNGEYYQESNGPTDSYAAISQVDRLQSEPESIRKWREEQTERLEALDA 120
Query: 568 NSRKQEAEWKEKAIKELEEWYARQDEQLQKTKANN------------RAAEEAFVNDIEE 711
NSRKQEAEWKEKAIKELEEWYARQDEQLQKTKANN +AAEEAFVNDIEE
Sbjct: 121 NSRKQEAEWKEKAIKELEEWYARQDEQLQKTKANNSTNINHPCYSLEQAAEEAFVNDIEE 180
Query: 712 SSPGTEWERVARLCDFNPKSSKQAKDVSRMRSVLISLKQAPLVH 843
SSPGTEWERVARLCDFNPKSSKQAKDVSRMRSVLISLKQAPLVH
Sbjct: 181 SSPGTEWERVARLCDFNPKSSKQAKDVSRMRSVLISLKQAPLVH 224
>ref|XP_003122050.1| PREDICTED: clathrin light chain A isoform 3 [Sus scrofa].
Length = 230
Score = 374 bits (959), Expect = e-104
Identities = 196/230 (85%), Positives = 196/230 (85%), Gaps = 18/230 (7%)
Frame = +1
Query: 208 MADLDPFGAPAGPSLGNGVAGEEDPAAAFLAQQESEIAGIENDEAFAILDXXXXXXXXXX 387
MADLDPFGAPAGPSLGNGVAGEEDPAAAFLAQQESEIAGIENDEAFAILD
Sbjct: 1 MADLDPFGAPAGPSLGNGVAGEEDPAAAFLAQQESEIAGIENDEAFAILDGGAPGPQPHG 60
Query: 388 XXXXXXDAVDGVMNGEYYQESNGPTDSYAAISQVDRLQSEPESIRKWREEQTERLEALDA 567
DAVDGVMNGEYYQESNGPTDSYAAISQVDRLQSEPESIRKWREEQTERLEALDA
Sbjct: 61 EPPGGPDAVDGVMNGEYYQESNGPTDSYAAISQVDRLQSEPESIRKWREEQTERLEALDA 120
Query: 568 NSRKQEAEWKEKAIKELEEWYARQDEQLQKTKANNR------------------AAEEAF 693
NSRKQEAEWKEKAIKELEEWYARQDEQLQKTKANNR AAEEAF
Sbjct: 121 NSRKQEAEWKEKAIKELEEWYARQDEQLQKTKANNRVADEAFYKQPFADVIGYVAAEEAF 180
Query: 694 VNDIEESSPGTEWERVARLCDFNPKSSKQAKDVSRMRSVLISLKQAPLVH 843
VNDIEESSPGTEWERVARLCDFNPKSSKQAKDVSRMRSVLISLKQAPLVH
Sbjct: 181 VNDIEESSPGTEWERVARLCDFNPKSSKQAKDVSRMRSVLISLKQAPLVH 230
>ref|XP_003122051.1| PREDICTED: clathrin light chain A isoform 4 [Sus scrofa].
Length = 242
Score = 369 bits (947), Expect = e-102
Identities = 196/242 (80%), Positives = 196/242 (80%), Gaps = 30/242 (12%)
Frame = +1
Query: 208 MADLDPFGAPAGPSLGNGVAGEEDPAAAFLAQQESEIAGIENDEAFAILDXXXXXXXXXX 387
MADLDPFGAPAGPSLGNGVAGEEDPAAAFLAQQESEIAGIENDEAFAILD
Sbjct: 1 MADLDPFGAPAGPSLGNGVAGEEDPAAAFLAQQESEIAGIENDEAFAILDGGAPGPQPHG 60
Query: 388 XXXXXXDAVDGVMNGEYYQESNGPTDSYAAISQVDRLQSEPESIRKWREEQTERLEALDA 567
DAVDGVMNGEYYQESNGPTDSYAAISQVDRLQSEPESIRKWREEQTERLEALDA
Sbjct: 61 EPPGGPDAVDGVMNGEYYQESNGPTDSYAAISQVDRLQSEPESIRKWREEQTERLEALDA 120
Query: 568 NSRKQEAEWKEKAIKELEEWYARQDEQLQKTKANNR------------------------ 675
NSRKQEAEWKEKAIKELEEWYARQDEQLQKTKANNR
Sbjct: 121 NSRKQEAEWKEKAIKELEEWYARQDEQLQKTKANNRVADEAFYKQPFADVIGYVTNINHP 180
Query: 676 ------AAEEAFVNDIEESSPGTEWERVARLCDFNPKSSKQAKDVSRMRSVLISLKQAPL 837
AAEEAFVNDIEESSPGTEWERVARLCDFNPKSSKQAKDVSRMRSVLISLKQAPL
Sbjct: 181 CYSLEQAAEEAFVNDIEESSPGTEWERVARLCDFNPKSSKQAKDVSRMRSVLISLKQAPL 240
Query: 838 VH 843
VH
Sbjct: 241 VH 242
>ref|XP_003123718.1| PREDICTED: clathrin light chain B-like [Sus scrofa].
Length = 175
Score = 160 bits (404), Expect = 1e-39
Identities = 85/159 (53%), Positives = 103/159 (64%), Gaps = 1/159 (0%)
Frame = +1
Query: 220 DPFGAPAGPSLGNGVAGEEDPAAAFLAQQESEIAGIENDEAF-AILDXXXXXXXXXXXXX 396
D FG + G EEDPAAAFLAQQESEIAGIENDE F A
Sbjct: 3 DDFGFFSSSESGAPEVAEEDPAAAFLAQQESEIAGIENDEGFGAPAGSQAALAQPGPASG 62
Query: 397 XXXDAVDGVMNGEYYQESNGPTDSYAAISQVDRLQSEPESIRKWREEQTERLEALDANSR 576
+ + +NG+ +Q++NGP D YAAI+Q DRL EPESIRKWREEQ +RL+ LDA S+
Sbjct: 63 AGPEDMGTTVNGDVFQDANGPADGYAAIAQADRLTQEPESIRKWREEQRKRLQELDAASK 122
Query: 577 KQEAEWKEKAIKELEEWYARQDEQLQKTKANNRAAEEAF 693
E EW+EKA K+LEEW RQ EQ++K K NNR A++AF
Sbjct: 123 VTEQEWREKAKKDLEEWNQRQSEQVEKNKINNRIADKAF 161
Database: RefSeq44_SP.fasta
Posted date: Nov 15, 2010 4:36 PM
Number of letters in database: 9,542,844
Number of sequences in database: 20,576
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 20576
Number of Hits to DB: 18,738,204
Number of extensions: 436947
Number of successful extensions: 2109
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 2073
Number of HSP's successfully gapped: 5
Length of query: 381
Length of database: 9,542,844
Length adjustment: 100
Effective length of query: 281
Effective length of database: 7,485,244
Effective search space: 2103353564
Effective search space used: 2103353564
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)