Search to RefSeqBP_Rel44
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20070806C-008203
(1059 letters)
Database: RefSeq44_BP.fasta
33,615 sequences; 18,071,151 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_002685629.1| PREDICTED: GDP-mannose pyrophosphorylase A [... 402 e-112
Alignment gi|XP_871035.1| PREDICTED: GDP-mannose pyrophosphorylase A isof... 402 e-112
Alignment gi|NP_001039633.1| mannose-1-phosphate guanyltransferase beta [... 115 7e-26
>ref|XP_002685629.1| PREDICTED: GDP-mannose pyrophosphorylase A [Bos taurus].
Length = 420
Score = 402 bits (1032), Expect = e-112
Identities = 205/241 (85%), Positives = 207/241 (85%), Gaps = 3/241 (1%)
Frame = +2
Query: 344 MLKAVILIGGPQKGTRFRPLSFEVPKPLFPVAGVPMIQHHIEACAQVPGMQEILLIGFYQ 523
MLKAVILIGGPQKGTRFRPLSFEVPKPLFPVAGVPMIQHHIEACAQVPGMQEILLIGFYQ
Sbjct: 1 MLKAVILIGGPQKGTRFRPLSFEVPKPLFPVAGVPMIQHHIEACAQVPGMQEILLIGFYQ 60
Query: 524 PDEPLTRFLEAAQQEFNLPIRYLQEFAPLGTGGGLYHFRDQILAGGPEAFFVLNADVCSD 703
PDEPLTRFLEAAQQEFNLPIRYLQEFAPLGTGGGLYHFRDQILAG PEAFFVLNADVCSD
Sbjct: 61 PDEPLTRFLEAAQQEFNLPIRYLQEFAPLGTGGGLYHFRDQILAGSPEAFFVLNADVCSD 120
Query: 704 FPLSAMLDAHRHRPHPFLLLGTTANRTQSLNYGCIVENPQTHEVLHYVEKPSTFVSDIIN 883
FPLSAMLD HRH+PHPFLLLGTTANRTQSLNYGCIVENPQTHEVLHYVEKPSTFVSDIIN
Sbjct: 121 FPLSAMLDVHRHQPHPFLLLGTTANRTQSLNYGCIVENPQTHEVLHYVEKPSTFVSDIIN 180
Query: 884 CGIYLFXXXXXXXXXXXXXXXAGWATGGL---FSLVARGRDIRLEQDVFAALAGQGQIYV 1054
CGIYLF G L L IRLEQDVF+ALAGQGQIYV
Sbjct: 181 CGIYLF--SPEALKPLRDVFQRNQQDGQLEDSSGLWPGAGTIRLEQDVFSALAGQGQIYV 238
Query: 1055 H 1057
H
Sbjct: 239 H 239
>ref|XP_871035.1| PREDICTED: GDP-mannose pyrophosphorylase A isoform 2 [Bos taurus].
Length = 420
Score = 402 bits (1032), Expect = e-112
Identities = 205/241 (85%), Positives = 207/241 (85%), Gaps = 3/241 (1%)
Frame = +2
Query: 344 MLKAVILIGGPQKGTRFRPLSFEVPKPLFPVAGVPMIQHHIEACAQVPGMQEILLIGFYQ 523
MLKAVILIGGPQKGTRFRPLSFEVPKPLFPVAGVPMIQHHIEACAQVPGMQEILLIGFYQ
Sbjct: 1 MLKAVILIGGPQKGTRFRPLSFEVPKPLFPVAGVPMIQHHIEACAQVPGMQEILLIGFYQ 60
Query: 524 PDEPLTRFLEAAQQEFNLPIRYLQEFAPLGTGGGLYHFRDQILAGGPEAFFVLNADVCSD 703
PDEPLTRFLEAAQQEFNLPIRYLQEFAPLGTGGGLYHFRDQILAG PEAFFVLNADVCSD
Sbjct: 61 PDEPLTRFLEAAQQEFNLPIRYLQEFAPLGTGGGLYHFRDQILAGSPEAFFVLNADVCSD 120
Query: 704 FPLSAMLDAHRHRPHPFLLLGTTANRTQSLNYGCIVENPQTHEVLHYVEKPSTFVSDIIN 883
FPLSAMLD HRH+PHPFLLLGTTANRTQSLNYGCIVENPQTHEVLHYVEKPSTFVSDIIN
Sbjct: 121 FPLSAMLDVHRHQPHPFLLLGTTANRTQSLNYGCIVENPQTHEVLHYVEKPSTFVSDIIN 180
Query: 884 CGIYLFXXXXXXXXXXXXXXXAGWATGGL---FSLVARGRDIRLEQDVFAALAGQGQIYV 1054
CGIYLF G L L IRLEQDVF+ALAGQGQIYV
Sbjct: 181 CGIYLF--SPEALKPLRDVFQRNQQDGQLEDSSGLWPGAGTIRLEQDVFSALAGQGQIYV 238
Query: 1055 H 1057
H
Sbjct: 239 H 239
>ref|NP_001039633.1| mannose-1-phosphate guanyltransferase beta [Bos taurus].
Length = 360
Score = 115 bits (288), Expect = 7e-26
Identities = 77/235 (32%), Positives = 114/235 (48%)
Frame = +2
Query: 347 LKAVILIGGPQKGTRFRPLSFEVPKPLFPVAGVPMIQHHIEACAQVPGMQEILLIGFYQP 526
+KA+IL+GG GTR RPL+ +PKPL P++ H +EA A G+ ++L Y
Sbjct: 1 MKALILVGG--YGTRLRPLTLSIPKPLADFCNKPILLHQVEALA-AAGVDHVILAVSYM- 56
Query: 527 DEPLTRFLEAAQQEFNLPIRYLQEFAPLGTGGGLYHFRDQILAGGPEAFFVLNADVCSDF 706
+ L + ++A +Q+ + I E PLGT G L RD +L + FFVLN+DV DF
Sbjct: 57 SQVLEKEMKAQEQKLGIRISMSHEEEPLGTAGPLALARD-LLCETADPFFVLNSDVICDF 115
Query: 707 PLSAMLDAHRHRPHPFLLLGTTANRTQSLNYGCIVENPQTHEVLHYVEKPSTFVSDIINC 886
P AM+ HRH +L T + YG +V T V +VEKP FVS+ IN
Sbjct: 116 PFEAMVQFHRHHGQEGSILVTKVE--EPSKYGVVVCEADTGRVHRFVEKPQVFVSNKINA 173
Query: 887 GIYLFXXXXXXXXXXXXXXXAGWATGGLFSLVARGRDIRLEQDVFAALAGQGQIY 1051
G+Y+ + +E+++F +A +GQ+Y
Sbjct: 174 GVYILSPSVLRRIQL--------------------QPTSIEKEIFPVMAKEGQLY 208
Database: RefSeq44_BP.fasta
Posted date: Nov 15, 2010 4:36 PM
Number of letters in database: 18,071,151
Number of sequences in database: 33,615
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33615
Number of Hits to DB: 47,283,386
Number of extensions: 1536472
Number of successful extensions: 5161
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 5143
Number of HSP's successfully gapped: 7
Length of query: 353
Length of database: 18,071,151
Length adjustment: 103
Effective length of query: 250
Effective length of database: 14,608,806
Effective search space: 3652201500
Effective search space used: 3652201500
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel44
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20070806C-008203
(1059 letters)
Database: RefSeq44_CP.fasta
33,359 sequences; 18,921,627 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_863926.1| PREDICTED: similar to GDP-mannose pyrophosphory... 393 e-109
Alignment gi|XP_863988.1| PREDICTED: similar to GDP-mannose pyrophosphory... 392 e-109
Alignment gi|XP_863968.1| PREDICTED: similar to GDP-mannose pyrophosphory... 392 e-109
Alignment gi|XP_863948.1| PREDICTED: similar to GDP-mannose pyrophosphory... 392 e-109
Alignment gi|XP_851514.1| PREDICTED: similar to GDP-mannose pyrophosphory... 392 e-109
Alignment gi|XP_850642.1| PREDICTED: similar to GDP-mannose pyrophosphory... 114 1e-25
Alignment gi|XP_541882.2| PREDICTED: similar to GDP-mannose pyrophosphory... 114 1e-25
>ref|XP_863926.1| PREDICTED: similar to GDP-mannose pyrophosphorylase A isoform 2
[Canis familiaris].
Length = 424
Score = 393 bits (1009), Expect = e-109
Identities = 200/246 (81%), Positives = 206/246 (83%), Gaps = 8/246 (3%)
Frame = +2
Query: 344 MLKAVILIGGPQKGTRFRPLSFEVPKPLFPVAGVPMIQHHIEACAQVPGMQEILLIGFYQ 523
MLKAVILIGGPQKGTRFRPLSFEVPKPLFPVAGVPMIQHHIEACAQVPGMQEILLIGFYQ
Sbjct: 1 MLKAVILIGGPQKGTRFRPLSFEVPKPLFPVAGVPMIQHHIEACAQVPGMQEILLIGFYQ 60
Query: 524 PDEPLTRFLEAAQQEFNLPIRYLQEFAPLGTGGGLYHFRDQILAGGPEAFFVLNADVCSD 703
PDE LTRFLEAAQQEFNLP+RYLQEF PLGTGGGLYHFRDQILAGGPEAFFVLNADVCSD
Sbjct: 61 PDEALTRFLEAAQQEFNLPVRYLQEFVPLGTGGGLYHFRDQILAGGPEAFFVLNADVCSD 120
Query: 704 FPLSAMLDAHRHRPHPFLLLGTTANRTQSLNYGCIVENPQTHEVLHYVEKPSTFVSDIIN 883
FPLSAML A+R +PHPFLLLGTTANRTQSLNYGCIVENPQTHEVLHYVEKPSTFVSD+IN
Sbjct: 121 FPLSAMLAAYRRQPHPFLLLGTTANRTQSLNYGCIVENPQTHEVLHYVEKPSTFVSDVIN 180
Query: 884 CGIYLFXXXXXXXXXXXXXXXAGWATGGLFSLVARGRD--------IRLEQDVFAALAGQ 1039
CGIYLF G F V+ IRLEQDVF+ALAGQ
Sbjct: 181 CGIYLFSPEALKPLRDVFQRN---QQDGQFVCVSEDSSGLWPGAGTIRLEQDVFSALAGQ 237
Query: 1040 GQIYVH 1057
GQIYVH
Sbjct: 238 GQIYVH 243
>ref|XP_863988.1| PREDICTED: similar to GDP-mannose pyrophosphorylase A isoform 5
[Canis familiaris].
Length = 420
Score = 392 bits (1006), Expect = e-109
Identities = 200/241 (82%), Positives = 205/241 (85%), Gaps = 3/241 (1%)
Frame = +2
Query: 344 MLKAVILIGGPQKGTRFRPLSFEVPKPLFPVAGVPMIQHHIEACAQVPGMQEILLIGFYQ 523
MLKAVILIGGPQKGTRFRPLSFEVPKPLFPVAGVPMIQHHIEACAQVPGMQEILLIGFYQ
Sbjct: 1 MLKAVILIGGPQKGTRFRPLSFEVPKPLFPVAGVPMIQHHIEACAQVPGMQEILLIGFYQ 60
Query: 524 PDEPLTRFLEAAQQEFNLPIRYLQEFAPLGTGGGLYHFRDQILAGGPEAFFVLNADVCSD 703
PDE LTRFLEAAQQEFNLP+RYLQEF PLGTGGGLYHFRDQILAGGPEAFFVLNADVCSD
Sbjct: 61 PDEALTRFLEAAQQEFNLPVRYLQEFVPLGTGGGLYHFRDQILAGGPEAFFVLNADVCSD 120
Query: 704 FPLSAMLDAHRHRPHPFLLLGTTANRTQSLNYGCIVENPQTHEVLHYVEKPSTFVSDIIN 883
FPLSAML A+R +PHPFLLLGTTANRTQSLNYGCIVENPQTHEVLHYVEKPSTFVSD+IN
Sbjct: 121 FPLSAMLAAYRRQPHPFLLLGTTANRTQSLNYGCIVENPQTHEVLHYVEKPSTFVSDVIN 180
Query: 884 CGIYLFXXXXXXXXXXXXXXXAGWATGGL---FSLVARGRDIRLEQDVFAALAGQGQIYV 1054
CGIYLF G L L IRLEQDVF+ALAGQGQIYV
Sbjct: 181 CGIYLF--SPEALKPLRDVFQRNQQDGQLEDSSGLWPGAGTIRLEQDVFSALAGQGQIYV 238
Query: 1055 H 1057
H
Sbjct: 239 H 239
>ref|XP_863968.1| PREDICTED: similar to GDP-mannose pyrophosphorylase A isoform 4
[Canis familiaris].
Length = 420
Score = 392 bits (1006), Expect = e-109
Identities = 200/241 (82%), Positives = 205/241 (85%), Gaps = 3/241 (1%)
Frame = +2
Query: 344 MLKAVILIGGPQKGTRFRPLSFEVPKPLFPVAGVPMIQHHIEACAQVPGMQEILLIGFYQ 523
MLKAVILIGGPQKGTRFRPLSFEVPKPLFPVAGVPMIQHHIEACAQVPGMQEILLIGFYQ
Sbjct: 1 MLKAVILIGGPQKGTRFRPLSFEVPKPLFPVAGVPMIQHHIEACAQVPGMQEILLIGFYQ 60
Query: 524 PDEPLTRFLEAAQQEFNLPIRYLQEFAPLGTGGGLYHFRDQILAGGPEAFFVLNADVCSD 703
PDE LTRFLEAAQQEFNLP+RYLQEF PLGTGGGLYHFRDQILAGGPEAFFVLNADVCSD
Sbjct: 61 PDEALTRFLEAAQQEFNLPVRYLQEFVPLGTGGGLYHFRDQILAGGPEAFFVLNADVCSD 120
Query: 704 FPLSAMLDAHRHRPHPFLLLGTTANRTQSLNYGCIVENPQTHEVLHYVEKPSTFVSDIIN 883
FPLSAML A+R +PHPFLLLGTTANRTQSLNYGCIVENPQTHEVLHYVEKPSTFVSD+IN
Sbjct: 121 FPLSAMLAAYRRQPHPFLLLGTTANRTQSLNYGCIVENPQTHEVLHYVEKPSTFVSDVIN 180
Query: 884 CGIYLFXXXXXXXXXXXXXXXAGWATGGL---FSLVARGRDIRLEQDVFAALAGQGQIYV 1054
CGIYLF G L L IRLEQDVF+ALAGQGQIYV
Sbjct: 181 CGIYLF--SPEALKPLRDVFQRNQQDGQLEDSSGLWPGAGTIRLEQDVFSALAGQGQIYV 238
Query: 1055 H 1057
H
Sbjct: 239 H 239
>ref|XP_863948.1| PREDICTED: similar to GDP-mannose pyrophosphorylase A isoform 3
[Canis familiaris].
Length = 428
Score = 392 bits (1006), Expect = e-109
Identities = 200/241 (82%), Positives = 205/241 (85%), Gaps = 3/241 (1%)
Frame = +2
Query: 344 MLKAVILIGGPQKGTRFRPLSFEVPKPLFPVAGVPMIQHHIEACAQVPGMQEILLIGFYQ 523
MLKAVILIGGPQKGTRFRPLSFEVPKPLFPVAGVPMIQHHIEACAQVPGMQEILLIGFYQ
Sbjct: 1 MLKAVILIGGPQKGTRFRPLSFEVPKPLFPVAGVPMIQHHIEACAQVPGMQEILLIGFYQ 60
Query: 524 PDEPLTRFLEAAQQEFNLPIRYLQEFAPLGTGGGLYHFRDQILAGGPEAFFVLNADVCSD 703
PDE LTRFLEAAQQEFNLP+RYLQEF PLGTGGGLYHFRDQILAGGPEAFFVLNADVCSD
Sbjct: 61 PDEALTRFLEAAQQEFNLPVRYLQEFVPLGTGGGLYHFRDQILAGGPEAFFVLNADVCSD 120
Query: 704 FPLSAMLDAHRHRPHPFLLLGTTANRTQSLNYGCIVENPQTHEVLHYVEKPSTFVSDIIN 883
FPLSAML A+R +PHPFLLLGTTANRTQSLNYGCIVENPQTHEVLHYVEKPSTFVSD+IN
Sbjct: 121 FPLSAMLAAYRRQPHPFLLLGTTANRTQSLNYGCIVENPQTHEVLHYVEKPSTFVSDVIN 180
Query: 884 CGIYLFXXXXXXXXXXXXXXXAGWATGGL---FSLVARGRDIRLEQDVFAALAGQGQIYV 1054
CGIYLF G L L IRLEQDVF+ALAGQGQIYV
Sbjct: 181 CGIYLF--SPEALKPLRDVFQRNQQDGQLEDSSGLWPGAGTIRLEQDVFSALAGQGQIYV 238
Query: 1055 H 1057
H
Sbjct: 239 H 239
>ref|XP_851514.1| PREDICTED: similar to GDP-mannose pyrophosphorylase A isoform 1
[Canis familiaris].
Length = 420
Score = 392 bits (1006), Expect = e-109
Identities = 200/241 (82%), Positives = 205/241 (85%), Gaps = 3/241 (1%)
Frame = +2
Query: 344 MLKAVILIGGPQKGTRFRPLSFEVPKPLFPVAGVPMIQHHIEACAQVPGMQEILLIGFYQ 523
MLKAVILIGGPQKGTRFRPLSFEVPKPLFPVAGVPMIQHHIEACAQVPGMQEILLIGFYQ
Sbjct: 1 MLKAVILIGGPQKGTRFRPLSFEVPKPLFPVAGVPMIQHHIEACAQVPGMQEILLIGFYQ 60
Query: 524 PDEPLTRFLEAAQQEFNLPIRYLQEFAPLGTGGGLYHFRDQILAGGPEAFFVLNADVCSD 703
PDE LTRFLEAAQQEFNLP+RYLQEF PLGTGGGLYHFRDQILAGGPEAFFVLNADVCSD
Sbjct: 61 PDEALTRFLEAAQQEFNLPVRYLQEFVPLGTGGGLYHFRDQILAGGPEAFFVLNADVCSD 120
Query: 704 FPLSAMLDAHRHRPHPFLLLGTTANRTQSLNYGCIVENPQTHEVLHYVEKPSTFVSDIIN 883
FPLSAML A+R +PHPFLLLGTTANRTQSLNYGCIVENPQTHEVLHYVEKPSTFVSD+IN
Sbjct: 121 FPLSAMLAAYRRQPHPFLLLGTTANRTQSLNYGCIVENPQTHEVLHYVEKPSTFVSDVIN 180
Query: 884 CGIYLFXXXXXXXXXXXXXXXAGWATGGL---FSLVARGRDIRLEQDVFAALAGQGQIYV 1054
CGIYLF G L L IRLEQDVF+ALAGQGQIYV
Sbjct: 181 CGIYLF--SPEALKPLRDVFQRNQQDGQLEDSSGLWPGAGTIRLEQDVFSALAGQGQIYV 238
Query: 1055 H 1057
H
Sbjct: 239 H 239
>ref|XP_850642.1| PREDICTED: similar to GDP-mannose pyrophosphorylase B isoform 2
isoform 2 [Canis familiaris].
Length = 876
Score = 114 bits (286), Expect = 1e-25
Identities = 76/235 (32%), Positives = 114/235 (48%)
Frame = +2
Query: 347 LKAVILIGGPQKGTRFRPLSFEVPKPLFPVAGVPMIQHHIEACAQVPGMQEILLIGFYQP 526
+KA+IL+GG GTR RPL+ +PKPL P++ H +EA A G+ ++L Y
Sbjct: 1 MKALILVGG--YGTRLRPLTLSIPKPLVDFCNKPILLHQVEALA-AAGVDHVILAVSYM- 56
Query: 527 DEPLTRFLEAAQQEFNLPIRYLQEFAPLGTGGGLYHFRDQILAGGPEAFFVLNADVCSDF 706
+ L + ++A +Q + I E PLGT G L RD +L+ + FFVLN+DV DF
Sbjct: 57 SQMLEKEMKAQEQRLGIRISMSHEEEPLGTAGPLALARD-LLSETADPFFVLNSDVICDF 115
Query: 707 PLSAMLDAHRHRPHPFLLLGTTANRTQSLNYGCIVENPQTHEVLHYVEKPSTFVSDIINC 886
P AM+ HRH +L T + YG +V T + +VEKP FVS+ IN
Sbjct: 116 PFQAMVQFHRHHGQEGSILVTKVE--EPSKYGVVVCEADTGRIHRFVEKPQVFVSNKINA 173
Query: 887 GIYLFXXXXXXXXXXXXXXXAGWATGGLFSLVARGRDIRLEQDVFAALAGQGQIY 1051
G+Y+ + +E+++F +A +GQ+Y
Sbjct: 174 GMYILNPTVLRRIQL--------------------QPTSIEKEIFPVMAKEGQLY 208
>ref|XP_541882.2| PREDICTED: similar to GDP-mannose pyrophosphorylase B isoform 2
isoform 1 [Canis familiaris].
Length = 360
Score = 114 bits (286), Expect = 1e-25
Identities = 76/235 (32%), Positives = 114/235 (48%)
Frame = +2
Query: 347 LKAVILIGGPQKGTRFRPLSFEVPKPLFPVAGVPMIQHHIEACAQVPGMQEILLIGFYQP 526
+KA+IL+GG GTR RPL+ +PKPL P++ H +EA A G+ ++L Y
Sbjct: 1 MKALILVGG--YGTRLRPLTLSIPKPLVDFCNKPILLHQVEALA-AAGVDHVILAVSYM- 56
Query: 527 DEPLTRFLEAAQQEFNLPIRYLQEFAPLGTGGGLYHFRDQILAGGPEAFFVLNADVCSDF 706
+ L + ++A +Q + I E PLGT G L RD +L+ + FFVLN+DV DF
Sbjct: 57 SQMLEKEMKAQEQRLGIRISMSHEEEPLGTAGPLALARD-LLSETADPFFVLNSDVICDF 115
Query: 707 PLSAMLDAHRHRPHPFLLLGTTANRTQSLNYGCIVENPQTHEVLHYVEKPSTFVSDIINC 886
P AM+ HRH +L T + YG +V T + +VEKP FVS+ IN
Sbjct: 116 PFQAMVQFHRHHGQEGSILVTKVE--EPSKYGVVVCEADTGRIHRFVEKPQVFVSNKINA 173
Query: 887 GIYLFXXXXXXXXXXXXXXXAGWATGGLFSLVARGRDIRLEQDVFAALAGQGQIY 1051
G+Y+ + +E+++F +A +GQ+Y
Sbjct: 174 GMYILNPTVLRRIQL--------------------QPTSIEKEIFPVMAKEGQLY 208
Database: RefSeq44_CP.fasta
Posted date: Nov 15, 2010 4:36 PM
Number of letters in database: 18,921,627
Number of sequences in database: 33,359
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33359
Number of Hits to DB: 48,252,360
Number of extensions: 1550354
Number of successful extensions: 5425
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 5402
Number of HSP's successfully gapped: 17
Length of query: 353
Length of database: 18,921,627
Length adjustment: 104
Effective length of query: 249
Effective length of database: 15,452,291
Effective search space: 3847620459
Effective search space used: 3847620459
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel44
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20070806C-008203
(1059 letters)
Database: RefSeq44_HP.fasta
33,950 sequences; 18,324,212 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_037467.2| mannose-1-phosphate guanyltransferase alpha [Ho... 392 e-109
Alignment gi|NP_995319.1| mannose-1-phosphate guanyltransferase alpha [Ho... 392 e-109
Alignment gi|NP_037466.2| mannose-1-phosphate guanyltransferase beta isof... 114 2e-25
Alignment gi|NP_068806.1| mannose-1-phosphate guanyltransferase beta isof... 114 2e-25
>ref|NP_037467.2| mannose-1-phosphate guanyltransferase alpha [Homo sapiens].
Length = 420
Score = 392 bits (1008), Expect = e-109
Identities = 200/241 (82%), Positives = 206/241 (85%), Gaps = 3/241 (1%)
Frame = +2
Query: 344 MLKAVILIGGPQKGTRFRPLSFEVPKPLFPVAGVPMIQHHIEACAQVPGMQEILLIGFYQ 523
MLKAVILIGGPQKGTRFRPLSFEVPKPLFPVAGVPMIQHHIEACAQVPGMQEILLIGFYQ
Sbjct: 1 MLKAVILIGGPQKGTRFRPLSFEVPKPLFPVAGVPMIQHHIEACAQVPGMQEILLIGFYQ 60
Query: 524 PDEPLTRFLEAAQQEFNLPIRYLQEFAPLGTGGGLYHFRDQILAGGPEAFFVLNADVCSD 703
PDEPLT+FLEAAQQEFNLP+RYLQEFAPLGTGGGLYHFRDQILAG PEAFFVLNADVCSD
Sbjct: 61 PDEPLTQFLEAAQQEFNLPVRYLQEFAPLGTGGGLYHFRDQILAGSPEAFFVLNADVCSD 120
Query: 704 FPLSAMLDAHRHRPHPFLLLGTTANRTQSLNYGCIVENPQTHEVLHYVEKPSTFVSDIIN 883
FPLSAML+AHR + HPFLLLGTTANRTQSLNYGCIVENPQTHEVLHYVEKPSTF+SDIIN
Sbjct: 121 FPLSAMLEAHRRQRHPFLLLGTTANRTQSLNYGCIVENPQTHEVLHYVEKPSTFISDIIN 180
Query: 884 CGIYLFXXXXXXXXXXXXXXXAGWATGGLF---SLVARGRDIRLEQDVFAALAGQGQIYV 1054
CGIYLF G L L IRLEQDVF+ALAGQGQIYV
Sbjct: 181 CGIYLF--SPEALKPLRDVFQRNQQDGQLEDSPGLWPGAGTIRLEQDVFSALAGQGQIYV 238
Query: 1055 H 1057
H
Sbjct: 239 H 239
>ref|NP_995319.1| mannose-1-phosphate guanyltransferase alpha [Homo sapiens].
Length = 420
Score = 392 bits (1008), Expect = e-109
Identities = 200/241 (82%), Positives = 206/241 (85%), Gaps = 3/241 (1%)
Frame = +2
Query: 344 MLKAVILIGGPQKGTRFRPLSFEVPKPLFPVAGVPMIQHHIEACAQVPGMQEILLIGFYQ 523
MLKAVILIGGPQKGTRFRPLSFEVPKPLFPVAGVPMIQHHIEACAQVPGMQEILLIGFYQ
Sbjct: 1 MLKAVILIGGPQKGTRFRPLSFEVPKPLFPVAGVPMIQHHIEACAQVPGMQEILLIGFYQ 60
Query: 524 PDEPLTRFLEAAQQEFNLPIRYLQEFAPLGTGGGLYHFRDQILAGGPEAFFVLNADVCSD 703
PDEPLT+FLEAAQQEFNLP+RYLQEFAPLGTGGGLYHFRDQILAG PEAFFVLNADVCSD
Sbjct: 61 PDEPLTQFLEAAQQEFNLPVRYLQEFAPLGTGGGLYHFRDQILAGSPEAFFVLNADVCSD 120
Query: 704 FPLSAMLDAHRHRPHPFLLLGTTANRTQSLNYGCIVENPQTHEVLHYVEKPSTFVSDIIN 883
FPLSAML+AHR + HPFLLLGTTANRTQSLNYGCIVENPQTHEVLHYVEKPSTF+SDIIN
Sbjct: 121 FPLSAMLEAHRRQRHPFLLLGTTANRTQSLNYGCIVENPQTHEVLHYVEKPSTFISDIIN 180
Query: 884 CGIYLFXXXXXXXXXXXXXXXAGWATGGLF---SLVARGRDIRLEQDVFAALAGQGQIYV 1054
CGIYLF G L L IRLEQDVF+ALAGQGQIYV
Sbjct: 181 CGIYLF--SPEALKPLRDVFQRNQQDGQLEDSPGLWPGAGTIRLEQDVFSALAGQGQIYV 238
Query: 1055 H 1057
H
Sbjct: 239 H 239
>ref|NP_037466.2| mannose-1-phosphate guanyltransferase beta isoform 1 [Homo sapiens].
Length = 387
Score = 114 bits (284), Expect = 2e-25
Identities = 80/238 (33%), Positives = 117/238 (49%), Gaps = 3/238 (1%)
Frame = +2
Query: 347 LKAVILIGGPQKGTRFRPLSFEVPKPLFPVAGVPMIQHHIEACAQVPGMQEILLIGFYQP 526
+KA+IL+GG GTR RPL+ PKPL P++ H +EA A G+ ++L Y
Sbjct: 1 MKALILVGG--YGTRLRPLTLSTPKPLVDFCNKPILLHQVEALAAA-GVDHVILAVSYM- 56
Query: 527 DEPLTRFLEAAQQEFNLPIRYLQEFAPLGTGGGLYHFRDQILAGGPEAFFVLNADVCSDF 706
+ L + ++A +Q + I E PLGT G L RD +L+ + FFVLN+DV DF
Sbjct: 57 SQVLEKEMKAQEQRLGIRISMSHEEEPLGTAGPLALARD-LLSETADPFFVLNSDVICDF 115
Query: 707 PLSAMLDAHRHRPHPFLLLGTTANRTQSLNYGCIVENPQTHEVLHYVEKPSTFVSDIINC 886
P AM+ HRH +L T + YG +V T + +VEKP FVS+ IN
Sbjct: 116 PFQAMVQFHRHHGQEGSILVTKVE--EPSKYGVVVCEADTGRIHRFVEKPQVFVSNKINA 173
Query: 887 GIYLFXXXXXXXXXXXXXXXAGWATGGLFSLVARGRDIR---LEQDVFAALAGQGQIY 1051
G+Y+ L V R ++ +E++VF +A +GQ+Y
Sbjct: 174 GMYI-----------------------LSPAVLRRIQLQPTSIEKEVFPIMAKEGQLY 208
>ref|NP_068806.1| mannose-1-phosphate guanyltransferase beta isoform 2 [Homo sapiens].
Length = 360
Score = 114 bits (284), Expect = 2e-25
Identities = 80/238 (33%), Positives = 117/238 (49%), Gaps = 3/238 (1%)
Frame = +2
Query: 347 LKAVILIGGPQKGTRFRPLSFEVPKPLFPVAGVPMIQHHIEACAQVPGMQEILLIGFYQP 526
+KA+IL+GG GTR RPL+ PKPL P++ H +EA A G+ ++L Y
Sbjct: 1 MKALILVGG--YGTRLRPLTLSTPKPLVDFCNKPILLHQVEALAAA-GVDHVILAVSYM- 56
Query: 527 DEPLTRFLEAAQQEFNLPIRYLQEFAPLGTGGGLYHFRDQILAGGPEAFFVLNADVCSDF 706
+ L + ++A +Q + I E PLGT G L RD +L+ + FFVLN+DV DF
Sbjct: 57 SQVLEKEMKAQEQRLGIRISMSHEEEPLGTAGPLALARD-LLSETADPFFVLNSDVICDF 115
Query: 707 PLSAMLDAHRHRPHPFLLLGTTANRTQSLNYGCIVENPQTHEVLHYVEKPSTFVSDIINC 886
P AM+ HRH +L T + YG +V T + +VEKP FVS+ IN
Sbjct: 116 PFQAMVQFHRHHGQEGSILVTKVE--EPSKYGVVVCEADTGRIHRFVEKPQVFVSNKINA 173
Query: 887 GIYLFXXXXXXXXXXXXXXXAGWATGGLFSLVARGRDIR---LEQDVFAALAGQGQIY 1051
G+Y+ L V R ++ +E++VF +A +GQ+Y
Sbjct: 174 GMYI-----------------------LSPAVLRRIQLQPTSIEKEVFPIMAKEGQLY 208
Database: RefSeq44_HP.fasta
Posted date: Nov 15, 2010 4:36 PM
Number of letters in database: 18,324,212
Number of sequences in database: 33,950
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33950
Number of Hits to DB: 47,531,215
Number of extensions: 1526685
Number of successful extensions: 5164
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 5150
Number of HSP's successfully gapped: 10
Length of query: 353
Length of database: 18,324,212
Length adjustment: 104
Effective length of query: 249
Effective length of database: 14,793,412
Effective search space: 3683559588
Effective search space used: 3683559588
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel44
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20070806C-008203
(1059 letters)
Database: RefSeq44_MP.fasta
29,866 sequences; 15,452,059 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_598469.1| mannose-1-phosphate guanyltransferase alpha [Mu... 390 e-109
Alignment gi|NP_808578.1| mannose-1-phosphate guanyltransferase beta [Mus... 114 2e-25
>ref|NP_598469.1| mannose-1-phosphate guanyltransferase alpha [Mus musculus].
Length = 420
Score = 390 bits (1002), Expect = e-109
Identities = 198/248 (79%), Positives = 204/248 (82%), Gaps = 10/248 (4%)
Frame = +2
Query: 344 MLKAVILIGGPQKGTRFRPLSFEVPKPLFPVAGVPMIQHHIEACAQVPGMQEILLIGFYQ 523
MLKAVILIGGPQKGTRFRPLSFEVPKPLFPVAGVPMIQHHIEACAQVPGMQEILLIGFYQ
Sbjct: 1 MLKAVILIGGPQKGTRFRPLSFEVPKPLFPVAGVPMIQHHIEACAQVPGMQEILLIGFYQ 60
Query: 524 PDEPLTRFLEAAQQEFNLPIRYLQEFAPLGTGGGLYHFRDQILAGGPEAFFVLNADVCSD 703
PDE LT+FLEAAQQEFNLP+RYLQEFAPLGTGGGLYHFRDQILAG PEAFFVLNADVCSD
Sbjct: 61 PDEALTQFLEAAQQEFNLPVRYLQEFAPLGTGGGLYHFRDQILAGAPEAFFVLNADVCSD 120
Query: 704 FPLSAMLDAHRHRPHPFLLLGTTANRTQSLNYGCIVENPQTHEVLHYVEKPSTFVSDIIN 883
FPLSAML+AHR + HPFLLLGTTANRTQSLNYGCIVENPQTHEVLHYVEKPSTF+SDIIN
Sbjct: 121 FPLSAMLEAHRRQRHPFLLLGTTANRTQSLNYGCIVENPQTHEVLHYVEKPSTFISDIIN 180
Query: 884 CGIYLF----------XXXXXXXXXXXXXXXAGWATGGLFSLVARGRDIRLEQDVFAALA 1033
CGIYLF W G IRLEQDVF+ALA
Sbjct: 181 CGIYLFSPEALKPLRDVFQRNQQDGQLEESPGSWPGAG---------TIRLEQDVFSALA 231
Query: 1034 GQGQIYVH 1057
GQGQIYVH
Sbjct: 232 GQGQIYVH 239
>ref|NP_808578.1| mannose-1-phosphate guanyltransferase beta [Mus musculus].
Length = 360
Score = 114 bits (284), Expect = 2e-25
Identities = 76/235 (32%), Positives = 113/235 (48%)
Frame = +2
Query: 347 LKAVILIGGPQKGTRFRPLSFEVPKPLFPVAGVPMIQHHIEACAQVPGMQEILLIGFYQP 526
+KA+IL+GG GTR RPL+ PKPL P++ H +EA A G+ ++L Y
Sbjct: 1 MKALILVGG--YGTRLRPLTLSTPKPLVDFCNKPILLHQVEALAAA-GVDHVILAVSYM- 56
Query: 527 DEPLTRFLEAAQQEFNLPIRYLQEFAPLGTGGGLYHFRDQILAGGPEAFFVLNADVCSDF 706
+ L + ++A +Q + I E PLGT G L RD +L+ + FFVLN+DV DF
Sbjct: 57 SQMLEKEMKAQEQRLGIRISMSHEEEPLGTAGPLALARD-LLSETADPFFVLNSDVICDF 115
Query: 707 PLSAMLDAHRHRPHPFLLLGTTANRTQSLNYGCIVENPQTHEVLHYVEKPSTFVSDIINC 886
P AM+ HRH +L T + YG +V T + +VEKP FVS+ IN
Sbjct: 116 PFQAMVQFHRHHGQEGSILVTKVE--EPSKYGVVVCEADTGRIHRFVEKPQVFVSNKINA 173
Query: 887 GIYLFXXXXXXXXXXXXXXXAGWATGGLFSLVARGRDIRLEQDVFAALAGQGQIY 1051
G+Y+ + +E+++F +A +GQ+Y
Sbjct: 174 GMYILSPAVLQRIQL--------------------KPTSIEKEIFPVMAKEGQLY 208
Database: RefSeq44_MP.fasta
Posted date: Nov 15, 2010 4:36 PM
Number of letters in database: 15,452,059
Number of sequences in database: 29,866
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 29866
Number of Hits to DB: 39,325,046
Number of extensions: 1229494
Number of successful extensions: 4119
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 4098
Number of HSP's successfully gapped: 4
Length of query: 353
Length of database: 15,452,059
Length adjustment: 102
Effective length of query: 251
Effective length of database: 12,405,727
Effective search space: 3113837477
Effective search space used: 3113837477
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel44
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20070806C-008203
(1059 letters)
Database: RefSeq44_SP.fasta
20,576 sequences; 9,542,844 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003132265.1| PREDICTED: mannose-1-phosphate guanyltransfe... 116 2e-26
>ref|XP_003132265.1| PREDICTED: mannose-1-phosphate guanyltransferase beta-like [Sus
scrofa].
Length = 360
Score = 116 bits (290), Expect = 2e-26
Identities = 77/235 (32%), Positives = 114/235 (48%)
Frame = +2
Query: 347 LKAVILIGGPQKGTRFRPLSFEVPKPLFPVAGVPMIQHHIEACAQVPGMQEILLIGFYQP 526
+KA+IL+GG GTR RPL+ +PKPL P++ H +EA A G+ ++L Y
Sbjct: 1 MKALILVGG--YGTRLRPLTLSIPKPLVDFCNKPILLHQVEALASA-GVDHVILAVSYM- 56
Query: 527 DEPLTRFLEAAQQEFNLPIRYLQEFAPLGTGGGLYHFRDQILAGGPEAFFVLNADVCSDF 706
+ L + ++A +Q + I E PLGT G L RD +L+ E FFVLN+DV DF
Sbjct: 57 SQMLEKEMKAQEQRLGIRISMSHEEEPLGTAGPLALARD-LLSETAEPFFVLNSDVICDF 115
Query: 707 PLSAMLDAHRHRPHPFLLLGTTANRTQSLNYGCIVENPQTHEVLHYVEKPSTFVSDIINC 886
P AM+ HRH +L T + YG +V T + +VEKP FVS+ IN
Sbjct: 116 PFQAMVQFHRHHGQEGSILVTKVE--EPSKYGVVVCEADTGRIHRFVEKPQVFVSNKINA 173
Query: 887 GIYLFXXXXXXXXXXXXXXXAGWATGGLFSLVARGRDIRLEQDVFAALAGQGQIY 1051
G+Y+ + +E+++F +A +GQ+Y
Sbjct: 174 GMYILSPAVLQRIQL--------------------QPTSIEKEIFPVMAKEGQLY 208
Database: RefSeq44_SP.fasta
Posted date: Nov 15, 2010 4:36 PM
Number of letters in database: 9,542,844
Number of sequences in database: 20,576
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 20576
Number of Hits to DB: 25,195,914
Number of extensions: 824402
Number of successful extensions: 2911
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 2903
Number of HSP's successfully gapped: 1
Length of query: 353
Length of database: 9,542,844
Length adjustment: 99
Effective length of query: 254
Effective length of database: 7,505,820
Effective search space: 1906478280
Effective search space used: 1906478280
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)