Search to RefSeqBP_Rel44
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20070806C-008312
(1542 letters)
Database: RefSeq44_BP.fasta
33,615 sequences; 18,071,151 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_002689245.1| PREDICTED: thioredoxin domain containing 15-... 476 e-134
Alignment gi|XP_602222.2| PREDICTED: thioredoxin domain containing 15-lik... 476 e-134
Alignment gi|NP_001030204.1| endoplasmic reticulum resident protein 44 pr... 52 1e-06
>ref|XP_002689245.1| PREDICTED: thioredoxin domain containing 15-like [Bos taurus].
Length = 403
Score = 476 bits (1224), Expect = e-134
Identities = 258/374 (68%), Positives = 270/374 (72%), Gaps = 5/374 (1%)
Frame = +3
Query: 9 GERASRGRAPFALRPGWCGRRPPRTMRXXXXXXXXXXXXXPPARGQEVAESR---WSEEQ 179
GER SR AP ALRPG GR PPRTMR PAR +E+AE R WSEEQ
Sbjct: 31 GERESRRCAPVALRPGCTGRCPPRTMRLIGWWQVLLWVLGSPARAEEIAEKRSHLWSEEQ 90
Query: 180 PAYPFQVGAVYXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-DRVVMLSVIPGEAEDNLSP 356
PAYPFQVGAVY + +VMLSVIPG AED LSP
Sbjct: 91 PAYPFQVGAVYMNEEVPSPDPVGQDPSAEETEAVLGLDADGNHMVMLSVIPGGAEDKLSP 150
Query: 357 EPXXXXXXXXXXQEDSRCHLRESLFSLDSSGS-FXXXXXXXXXXXXVADSDPAPAEDANA 533
E +E SRC+LRESLFSLD +G+ F VA+SDP P EDAN
Sbjct: 151 ESSSGTCGAGG-EEGSRCNLRESLFSLDRAGARFSEREEEYYTEPDVAESDPTPTEDANT 209
Query: 534 TESLKPPKVTCEERNVSGLENFTLKILNVSQDLMDFLNPNGSDCTLVLFYTPWCRFSASL 713
TESLK PKV CEERNV+GLENFTLKILN+SQDLMDFLNPNGSDCTLVLFYTPWCRFSASL
Sbjct: 210 TESLKSPKVNCEERNVTGLENFTLKILNMSQDLMDFLNPNGSDCTLVLFYTPWCRFSASL 269
Query: 714 APHFNSLPRAFPALHFLALDASQHSSLSTRFGTVAVPNILLFQGAKPMARFNHTDRTLET 893
APHFNSLPRAFPALHFLALDASQHSSLSTRFGTVAVPNILLFQGAKPMARFNHTDRTLET
Sbjct: 270 APHFNSLPRAFPALHFLALDASQHSSLSTRFGTVAVPNILLFQGAKPMARFNHTDRTLET 329
Query: 894 LKIFIFNQTGIEAKKNVVVTQADHIGPLPSTLIKSVDWXXXXXXXXXXXXXMYATIRTES 1073
LKIFIFNQTGIEAKKNVVVTQAD IGPLPSTLIKSVDW MYATIRTES
Sbjct: 330 LKIFIFNQTGIEAKKNVVVTQADQIGPLPSTLIKSVDWLLVFSLFFLISFIMYATIRTES 389
Query: 1074 IRWLIPGQEQDHAE 1115
IRWLIPGQEQ+HAE
Sbjct: 390 IRWLIPGQEQEHAE 403
>ref|XP_602222.2| PREDICTED: thioredoxin domain containing 15-like [Bos taurus].
Length = 403
Score = 476 bits (1224), Expect = e-134
Identities = 258/374 (68%), Positives = 270/374 (72%), Gaps = 5/374 (1%)
Frame = +3
Query: 9 GERASRGRAPFALRPGWCGRRPPRTMRXXXXXXXXXXXXXPPARGQEVAESR---WSEEQ 179
GER SR AP ALRPG GR PPRTMR PAR +E+AE R WSEEQ
Sbjct: 31 GERESRRCAPVALRPGCTGRCPPRTMRLIGWWQVLLWVLGSPARAEEIAEKRSHLWSEEQ 90
Query: 180 PAYPFQVGAVYXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-DRVVMLSVIPGEAEDNLSP 356
PAYPFQVGAVY + +VMLSVIPG AED LSP
Sbjct: 91 PAYPFQVGAVYMNEEVPSPDPVGQDPSAEETEAVLGLDADGNHMVMLSVIPGGAEDKLSP 150
Query: 357 EPXXXXXXXXXXQEDSRCHLRESLFSLDSSGS-FXXXXXXXXXXXXVADSDPAPAEDANA 533
E +E SRC+LRESLFSLD +G+ F VA+SDP P EDAN
Sbjct: 151 ESSSGTCGAGG-EEGSRCNLRESLFSLDRAGARFSEREEEYYTEPDVAESDPTPTEDANT 209
Query: 534 TESLKPPKVTCEERNVSGLENFTLKILNVSQDLMDFLNPNGSDCTLVLFYTPWCRFSASL 713
TESLK PKV CEERNV+GLENFTLKILN+SQDLMDFLNPNGSDCTLVLFYTPWCRFSASL
Sbjct: 210 TESLKSPKVNCEERNVTGLENFTLKILNMSQDLMDFLNPNGSDCTLVLFYTPWCRFSASL 269
Query: 714 APHFNSLPRAFPALHFLALDASQHSSLSTRFGTVAVPNILLFQGAKPMARFNHTDRTLET 893
APHFNSLPRAFPALHFLALDASQHSSLSTRFGTVAVPNILLFQGAKPMARFNHTDRTLET
Sbjct: 270 APHFNSLPRAFPALHFLALDASQHSSLSTRFGTVAVPNILLFQGAKPMARFNHTDRTLET 329
Query: 894 LKIFIFNQTGIEAKKNVVVTQADHIGPLPSTLIKSVDWXXXXXXXXXXXXXMYATIRTES 1073
LKIFIFNQTGIEAKKNVVVTQAD IGPLPSTLIKSVDW MYATIRTES
Sbjct: 330 LKIFIFNQTGIEAKKNVVVTQADQIGPLPSTLIKSVDWLLVFSLFFLISFIMYATIRTES 389
Query: 1074 IRWLIPGQEQDHAE 1115
IRWLIPGQEQ+HAE
Sbjct: 390 IRWLIPGQEQEHAE 403
>ref|NP_001030204.1| endoplasmic reticulum resident protein 44 precursor [Bos taurus].
Length = 406
Score = 52.4 bits (124), Expect = 1e-06
Identities = 34/113 (30%), Positives = 55/113 (48%), Gaps = 7/113 (6%)
Frame = +3
Query: 600 TLKILNVSQDLMDFLNPNGSDCTLVLFYTPWCRFSASLAPHF----NSLPRAFPALH--- 758
T +I+++ + +D + N +D LV FY WCRFS L P F N + +P +
Sbjct: 28 TAEIISLDTENIDDIL-NNADVALVNFYADWCRFSQMLHPIFEEASNVIKEEYPNANQVV 86
Query: 759 FLALDASQHSSLSTRFGTVAVPNILLFQGAKPMARFNHTDRTLETLKIFIFNQ 917
F +D QHS ++ R+ P + LF+ M R R+++ L +I Q
Sbjct: 87 FARVDCDQHSDIAQRYRISKYPTLKLFRNGMMMKREYRGQRSVKALADYIRQQ 139
Database: RefSeq44_BP.fasta
Posted date: Nov 15, 2010 4:36 PM
Number of letters in database: 18,071,151
Number of sequences in database: 33,615
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33615
Number of Hits to DB: 55,967,095
Number of extensions: 1466915
Number of successful extensions: 4934
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 4910
Number of HSP's successfully gapped: 5
Length of query: 514
Length of database: 18,071,151
Length adjustment: 107
Effective length of query: 407
Effective length of database: 14,474,346
Effective search space: 5891058822
Effective search space used: 5891058822
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqCP_Rel44
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20070806C-008312
(1542 letters)
Database: RefSeq44_CP.fasta
33,359 sequences; 18,921,627 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_852413.1| PREDICTED: similar to disulfide isomerase [Cani... 420 e-117
Alignment gi|XP_532011.2| PREDICTED: similar to Thioredoxin domain contai... 51 3e-06
>ref|XP_852413.1| PREDICTED: similar to disulfide isomerase [Canis familiaris].
Length = 348
Score = 420 bits (1080), Expect = e-117
Identities = 228/333 (68%), Positives = 240/333 (72%), Gaps = 5/333 (1%)
Frame = +3
Query: 132 PARGQEVAESR---WSEEQPAYPFQVGAVYXXXXXXXXXXXXXXXXXXXXXXXXXXXXX- 299
PARG EVAE SEEQPA+ G V
Sbjct: 17 PARGLEVAEEGSHLQSEEQPAHALLAGVVSTSEEEHPRGPGGQDRSAGEAGTVLGLDADG 76
Query: 300 DRVVMLSVIPGEAEDNLSPEPXXXXXXXXXXQEDSRCHLRESLFSLDSSG-SFXXXXXXX 476
D V+MLSVIPGE +D LS EP +EDSRC LRE LFSLD +G SF
Sbjct: 77 DHVLMLSVIPGETDDKLSSEPSGGTCGAQG-EEDSRCSLREHLFSLDGTGASFQDREEEY 135
Query: 477 XXXXXVADSDPAPAEDANATESLKPPKVTCEERNVSGLENFTLKILNVSQDLMDFLNPNG 656
V +SDPAP ED+N TESLK PKV CEERNV+GLENFTLK+LN+SQDLMDFLNPNG
Sbjct: 136 YSEPEVGESDPAPHEDSNNTESLKSPKVNCEERNVTGLENFTLKVLNMSQDLMDFLNPNG 195
Query: 657 SDCTLVLFYTPWCRFSASLAPHFNSLPRAFPALHFLALDASQHSSLSTRFGTVAVPNILL 836
SDCTLVLFYTPWCRFSASLAPHFNSLPRAFPALHFLALDASQHSSLSTRFGTVAVPNILL
Sbjct: 196 SDCTLVLFYTPWCRFSASLAPHFNSLPRAFPALHFLALDASQHSSLSTRFGTVAVPNILL 255
Query: 837 FQGAKPMARFNHTDRTLETLKIFIFNQTGIEAKKNVVVTQADHIGPLPSTLIKSVDWXXX 1016
FQGAKPMARFNHTDRTLETLK+FIFNQTGIEAKKNVVVTQAD IGPLPSTLIKSVDW
Sbjct: 256 FQGAKPMARFNHTDRTLETLKVFIFNQTGIEAKKNVVVTQADQIGPLPSTLIKSVDWLLV 315
Query: 1017 XXXXXXXXXXMYATIRTESIRWLIPGQEQDHAE 1115
MYATIRTESIRWLIPGQEQ+H E
Sbjct: 316 FSLFFLISFIMYATIRTESIRWLIPGQEQEHVE 348
>ref|XP_532011.2| PREDICTED: similar to Thioredoxin domain containing protein 4
precursor (Endoplasmic reticulum resident protein ERp44)
[Canis familiaris].
Length = 344
Score = 51.2 bits (121), Expect = 3e-06
Identities = 31/96 (32%), Positives = 45/96 (46%), Gaps = 7/96 (7%)
Frame = +3
Query: 651 NGSDCTLVLFYTPWCRFSASLAPHF----NSLPRAFP---ALHFLALDASQHSSLSTRFG 809
N +D LV FY WCRFS L P F N + +P + F +D QHS ++ R+
Sbjct: 114 NNADVALVNFYADWCRFSQMLHPIFEEASNVIKEEYPNENQVVFARVDCDQHSDIAQRYR 173
Query: 810 TVAVPNILLFQGAKPMARFNHTDRTLETLKIFIFNQ 917
P + LF+ M R R+++ L +I Q
Sbjct: 174 ISKYPTLKLFRNGMMMKREYRGQRSVKALADYIRQQ 209
Database: RefSeq44_CP.fasta
Posted date: Nov 15, 2010 4:36 PM
Number of letters in database: 18,921,627
Number of sequences in database: 33,359
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33359
Number of Hits to DB: 57,192,334
Number of extensions: 1481752
Number of successful extensions: 4920
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 4899
Number of HSP's successfully gapped: 2
Length of query: 514
Length of database: 18,921,627
Length adjustment: 107
Effective length of query: 407
Effective length of database: 15,352,214
Effective search space: 6248351098
Effective search space used: 6248351098
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqHP_Rel44
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20070806C-008312
(1542 letters)
Database: RefSeq44_HP.fasta
33,950 sequences; 18,324,212 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_078991.3| thioredoxin domain-containing protein 15 precur... 448 e-126
Alignment gi|NP_055866.1| endoplasmic reticulum resident protein 44 precu... 51 3e-06
>ref|NP_078991.3| thioredoxin domain-containing protein 15 precursor [Homo sapiens].
Length = 360
Score = 448 bits (1152), Expect = e-126
Identities = 242/356 (67%), Positives = 255/356 (71%), Gaps = 5/356 (1%)
Frame = +3
Query: 63 GRRPPRTMRXXXXXXXXXXXXXPPARGQEVAESR---WSEEQPAYPFQVGAVYXXXXXXX 233
GRRPPR MR P RG EVAE WSEEQPA+P QVGAVY
Sbjct: 6 GRRPPRVMRLLGWWQVLLWVLGLPVRGVEVAEESGRLWSEEQPAHPLQVGAVYLGEEELL 65
Query: 234 XXXXXXXXXXXXXXXXXXXXXX-DRVVMLSVIPGEAEDNLSPEPXXXXXXXXXXQEDSRC 410
D +VMLSVIPGEAED +S EP EDSRC
Sbjct: 66 HDPMGQDRAAEEANAVLGLDTQGDHMVMLSVIPGEAEDKVSSEPSGVTCGAGGA-EDSRC 124
Query: 411 HLRESLFSLDSSGS-FXXXXXXXXXXXXVADSDPAPAEDANATESLKPPKVTCEERNVSG 587
++RESLFSLD +G+ F VA+SD AP ED+N TESLK PKV CEERN++G
Sbjct: 125 NVRESLFSLDGAGAHFPDREEEYYTEPEVAESDAAPTEDSNNTESLKSPKVNCEERNITG 184
Query: 588 LENFTLKILNVSQDLMDFLNPNGSDCTLVLFYTPWCRFSASLAPHFNSLPRAFPALHFLA 767
LENFTLKILN+SQDLMDFLNPNGSDCTLVLFYTPWCRFSASLAPHFNSLPRAFPALHFLA
Sbjct: 185 LENFTLKILNMSQDLMDFLNPNGSDCTLVLFYTPWCRFSASLAPHFNSLPRAFPALHFLA 244
Query: 768 LDASQHSSLSTRFGTVAVPNILLFQGAKPMARFNHTDRTLETLKIFIFNQTGIEAKKNVV 947
LDASQHSSLSTRFGTVAVPNILLFQGAKPMARFNHTDRTLETLKIFIFNQTGIEAKKNVV
Sbjct: 245 LDASQHSSLSTRFGTVAVPNILLFQGAKPMARFNHTDRTLETLKIFIFNQTGIEAKKNVV 304
Query: 948 VTQADHIGPLPSTLIKSVDWXXXXXXXXXXXXXMYATIRTESIRWLIPGQEQDHAE 1115
VTQAD IGPLPSTLIKSVDW MYATIRTESIRWLIPGQEQ+H E
Sbjct: 305 VTQADQIGPLPSTLIKSVDWLLVFSLFFLISFIMYATIRTESIRWLIPGQEQEHVE 360
>ref|NP_055866.1| endoplasmic reticulum resident protein 44 precursor [Homo sapiens].
Length = 406
Score = 50.8 bits (120), Expect = 3e-06
Identities = 31/96 (32%), Positives = 44/96 (45%), Gaps = 7/96 (7%)
Frame = +3
Query: 651 NGSDCTLVLFYTPWCRFSASLAPHFNS----LPRAFP---ALHFLALDASQHSSLSTRFG 809
N +D LV FY WCRFS L P F + FP + F +D QHS ++ R+
Sbjct: 44 NNADVALVNFYADWCRFSQMLHPIFEEASDVIKEEFPNENQVVFARVDCDQHSDIAQRYR 103
Query: 810 TVAVPNILLFQGAKPMARFNHTDRTLETLKIFIFNQ 917
P + LF+ M R R+++ L +I Q
Sbjct: 104 ISKYPTLKLFRNGMMMKREYRGQRSVKALADYIRQQ 139
Database: RefSeq44_HP.fasta
Posted date: Nov 15, 2010 4:36 PM
Number of letters in database: 18,324,212
Number of sequences in database: 33,950
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33950
Number of Hits to DB: 56,519,692
Number of extensions: 1469526
Number of successful extensions: 4697
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 4667
Number of HSP's successfully gapped: 3
Length of query: 514
Length of database: 18,324,212
Length adjustment: 107
Effective length of query: 407
Effective length of database: 14,691,562
Effective search space: 5979465734
Effective search space used: 5979465734
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqMP_Rel44
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20070806C-008312
(1542 letters)
Database: RefSeq44_MP.fasta
29,866 sequences; 15,452,059 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_780359.2| thioredoxin domain-containing protein 15 precur... 400 e-111
Alignment gi|NP_083848.1| endoplasmic reticulum resident protein 44 precu... 50 6e-06
>ref|NP_780359.2| thioredoxin domain-containing protein 15 precursor [Mus musculus].
Length = 344
Score = 400 bits (1028), Expect = e-111
Identities = 216/331 (65%), Positives = 233/331 (70%), Gaps = 3/331 (0%)
Frame = +3
Query: 132 PARGQEVAESR---WSEEQPAYPFQVGAVYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXD 302
PA G EVAE W EE+P QVGAVY D
Sbjct: 17 PAHGLEVAEDSGHPWREERPVPALQVGAVY-LHEEEVAQDHRDQARAAEPMEASLGPRGD 75
Query: 303 RVVMLSVIPGEAEDNLSPEPXXXXXXXXXXQEDSRCHLRESLFSLDSSGSFXXXXXXXXX 482
+V+LSV+PG AED SPE +ED C RE+LF L +G F
Sbjct: 76 PMVVLSVVPGAAEDQRSPE-AHDGTCSAQGEEDPSCG-RENLFGLQGAGGFQDREEEYYA 133
Query: 483 XXXVADSDPAPAEDANATESLKPPKVTCEERNVSGLENFTLKILNVSQDLMDFLNPNGSD 662
V +++P EDAN+T+SLK PKV CEERNV+GLENFTLKILN+SQDLMDFLNPNGSD
Sbjct: 134 EPGVTEAEPVATEDANSTDSLKSPKVNCEERNVTGLENFTLKILNMSQDLMDFLNPNGSD 193
Query: 663 CTLVLFYTPWCRFSASLAPHFNSLPRAFPALHFLALDASQHSSLSTRFGTVAVPNILLFQ 842
CTLVLFYTPWCRFSASLAPHFNSLPRAFP L FLALDASQHSSLSTRFGTVAVPNILLFQ
Sbjct: 194 CTLVLFYTPWCRFSASLAPHFNSLPRAFPTLGFLALDASQHSSLSTRFGTVAVPNILLFQ 253
Query: 843 GAKPMARFNHTDRTLETLKIFIFNQTGIEAKKNVVVTQADHIGPLPSTLIKSVDWXXXXX 1022
GAKPMARFNHTDRTLETLKIFIFNQTGIEAKKNVVVTQAD +GPLPSTLIK+VDW
Sbjct: 254 GAKPMARFNHTDRTLETLKIFIFNQTGIEAKKNVVVTQADQMGPLPSTLIKTVDWLLVFS 313
Query: 1023 XXXXXXXXMYATIRTESIRWLIPGQEQDHAE 1115
MYATIRTESIRWLIPGQEQ+HAE
Sbjct: 314 LFFLISFIMYATIRTESIRWLIPGQEQEHAE 344
>ref|NP_083848.1| endoplasmic reticulum resident protein 44 precursor [Mus musculus].
Length = 406
Score = 49.7 bits (117), Expect = 6e-06
Identities = 30/96 (31%), Positives = 44/96 (45%), Gaps = 7/96 (7%)
Frame = +3
Query: 651 NGSDCTLVLFYTPWCRFSASLAPHFNS----LPRAFP---ALHFLALDASQHSSLSTRFG 809
N +D LV FY WCRFS L P F + +P + F +D QHS ++ R+
Sbjct: 44 NNADVALVNFYADWCRFSQMLHPIFEEASDVIKEEYPDKNQVVFARVDCDQHSDIAQRYR 103
Query: 810 TVAVPNILLFQGAKPMARFNHTDRTLETLKIFIFNQ 917
P + LF+ M R R+++ L +I Q
Sbjct: 104 ISKYPTLKLFRNGMMMKREYRGQRSVKALADYIRQQ 139
Database: RefSeq44_MP.fasta
Posted date: Nov 15, 2010 4:36 PM
Number of letters in database: 15,452,059
Number of sequences in database: 29,866
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 29866
Number of Hits to DB: 47,074,445
Number of extensions: 1204942
Number of successful extensions: 3701
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 3690
Number of HSP's successfully gapped: 2
Length of query: 514
Length of database: 15,452,059
Length adjustment: 106
Effective length of query: 408
Effective length of database: 12,286,263
Effective search space: 5012795304
Effective search space used: 5012795304
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqSP_Rel44
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20070806C-008312
(1542 letters)
Database: RefSeq44_SP.fasta
20,576 sequences; 9,542,844 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001131101.1| endoplasmic reticulum resident protein 44 [S... 51 1e-06
>ref|NP_001131101.1| endoplasmic reticulum resident protein 44 [Sus scrofa].
Length = 406
Score = 51.2 bits (121), Expect = 1e-06
Identities = 31/96 (32%), Positives = 45/96 (46%), Gaps = 7/96 (7%)
Frame = +3
Query: 651 NGSDCTLVLFYTPWCRFSASLAPHF----NSLPRAFP---ALHFLALDASQHSSLSTRFG 809
N +D LV FY WCRFS L P F N + +P + F +D QHS ++ R+
Sbjct: 44 NNADVALVNFYADWCRFSQMLHPIFEEASNVIKEEYPNENQVVFARVDCDQHSDIAQRYR 103
Query: 810 TVAVPNILLFQGAKPMARFNHTDRTLETLKIFIFNQ 917
P + LF+ M R R+++ L +I Q
Sbjct: 104 ISKYPTLKLFRNGMMMKREYRGQRSVKALADYIRQQ 139
Database: RefSeq44_SP.fasta
Posted date: Nov 15, 2010 4:36 PM
Number of letters in database: 9,542,844
Number of sequences in database: 20,576
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 20576
Number of Hits to DB: 29,746,532
Number of extensions: 780745
Number of successful extensions: 2741
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 2733
Number of HSP's successfully gapped: 1
Length of query: 514
Length of database: 9,542,844
Length adjustment: 102
Effective length of query: 412
Effective length of database: 7,444,092
Effective search space: 3066965904
Effective search space used: 3066965904
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)