Search to RefSeqBP_Rel44
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20070806C-010504
(993 letters)
Database: RefSeq44_BP.fasta
33,615 sequences; 18,071,151 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001095726.1| lanC-like protein 2 [Bos taurus]. 326 2e-89
Alignment gi|NP_001069695.1| lanC-like protein 1 [Bos taurus]. 245 5e-65
Alignment gi|XP_002700274.1| PREDICTED: LanC lantibiotic synthetase compo... 144 2e-34
Alignment gi|XP_002706107.1| PREDICTED: LanC lantibiotic synthetase compo... 144 2e-34
>ref|NP_001095726.1| lanC-like protein 2 [Bos taurus].
Length = 433
Score = 326 bits (836), Expect = 2e-89
Identities = 150/161 (93%), Positives = 155/161 (96%)
Frame = +2
Query: 2 MRHKRFRSGNYPSSLSNETDRLVHWCHGAPGVIHTLMQAYKVFKEEKYLRDAVECSDVIW 181
MRHKRFRSGNYPSSLSNETDRLVHWCHGAPGVIH LMQA+KVFKEEKYL+DAVECSDVIW
Sbjct: 273 MRHKRFRSGNYPSSLSNETDRLVHWCHGAPGVIHVLMQAHKVFKEEKYLKDAVECSDVIW 332
Query: 182 QRGLLRKGYGICHGTAGNGYSFLSLYRLTQDKKYLYRACKFAEWCLEYGAHGCRIPDRPY 361
QRGLLRKGYGICHGTAGNGYSFLSLY +TQDKKYLYRACKFAEWCLEYGAHGCRIPDRPY
Sbjct: 333 QRGLLRKGYGICHGTAGNGYSFLSLYHITQDKKYLYRACKFAEWCLEYGAHGCRIPDRPY 392
Query: 362 SLFEGMAGAIHFLSDILAPETARFPAFELGSSERDPKVQKD 484
SLFEGMAG IHFLSDILAPE +RFPAFEL SS+RD KVQKD
Sbjct: 393 SLFEGMAGTIHFLSDILAPEASRFPAFELSSSQRDTKVQKD 433
>ref|NP_001069695.1| lanC-like protein 1 [Bos taurus].
Length = 399
Score = 245 bits (625), Expect = 5e-65
Identities = 107/145 (73%), Positives = 123/145 (84%)
Frame = +2
Query: 14 RFRSGNYPSSLSNETDRLVHWCHGAPGVIHTLMQAYKVFKEEKYLRDAVECSDVIWQRGL 193
+F SGNYP + + D L+HWCHGAPGVI+ L QAYKVFKEE+YL DA +C+DVIWQ GL
Sbjct: 255 KFPSGNYPPCVDDSRDLLIHWCHGAPGVIYMLTQAYKVFKEERYLNDAYQCADVIWQYGL 314
Query: 194 LRKGYGICHGTAGNGYSFLSLYRLTQDKKYLYRACKFAEWCLEYGAHGCRIPDRPYSLFE 373
L+KGYG+CHGTAGN Y+FLSLY LTQD KYLYRACKFAEWCL+YG HGCR PD P+SLFE
Sbjct: 315 LKKGYGLCHGTAGNAYAFLSLYSLTQDAKYLYRACKFAEWCLDYGEHGCRTPDTPFSLFE 374
Query: 374 GMAGAIHFLSDILAPETARFPAFEL 448
GMAG I+FL+D+L P ARFPAFEL
Sbjct: 375 GMAGTIYFLADLLVPTKARFPAFEL 399
>ref|XP_002700274.1| PREDICTED: LanC lantibiotic synthetase component C-like 3
(bacterial) [Bos taurus].
Length = 420
Score = 144 bits (362), Expect = 2e-34
Identities = 69/144 (47%), Positives = 93/144 (64%), Gaps = 4/144 (2%)
Frame = +2
Query: 29 NYPSSLSNETDR---LVHWCHGAPGVIHTLMQAYKVFKEEKYLRDAVECSDVIWQRGLLR 199
N+P L +R LVHWCHGAPG+ + +AY V K+ +YL + C ++ WQ+GLL+
Sbjct: 275 NWPPELGEAIERENELVHWCHGAPGIAYLFAKAYLVSKKPQYLDTCIRCGELTWQKGLLK 334
Query: 200 KGYGICHGTAGNGYSFLSLYRLTQDKKYLYRACKFAEWCL-EYGAHGCRIPDRPYSLFEG 376
KG GICHG AG+ Y FL LYRLT + KY+YRA +FAE+ E G R+ + YSL+EG
Sbjct: 335 KGPGICHGVAGSAYVFLLLYRLTGNSKYIYRAQRFAEFLFTEEFKAGSRVLESIYSLYEG 394
Query: 377 MAGAIHFLSDILAPETARFPAFEL 448
+G + FL D+L P A FP F +
Sbjct: 395 FSGTVCFLIDLLQPNQAEFPLFSV 418
>ref|XP_002706107.1| PREDICTED: LanC lantibiotic synthetase component C-like 3
(bacterial), partial [Bos taurus].
Length = 306
Score = 144 bits (362), Expect = 2e-34
Identities = 69/144 (47%), Positives = 93/144 (64%), Gaps = 4/144 (2%)
Frame = +2
Query: 29 NYPSSLSNETDR---LVHWCHGAPGVIHTLMQAYKVFKEEKYLRDAVECSDVIWQRGLLR 199
N+P L +R LVHWCHGAPG+ + +AY V K+ +YL + C ++ WQ+GLL+
Sbjct: 161 NWPPELGEAIERENELVHWCHGAPGIAYLFAKAYLVSKKPQYLDTCIRCGELTWQKGLLK 220
Query: 200 KGYGICHGTAGNGYSFLSLYRLTQDKKYLYRACKFAEWCL-EYGAHGCRIPDRPYSLFEG 376
KG GICHG AG+ Y FL LYRLT + KY+YRA +FAE+ E G R+ + YSL+EG
Sbjct: 221 KGPGICHGVAGSAYVFLLLYRLTGNSKYIYRAQRFAEFLFTEEFKAGSRVLESIYSLYEG 280
Query: 377 MAGAIHFLSDILAPETARFPAFEL 448
+G + FL D+L P A FP F +
Sbjct: 281 FSGTVCFLIDLLQPNQAEFPLFSV 304
Database: RefSeq44_BP.fasta
Posted date: Nov 15, 2010 4:36 PM
Number of letters in database: 18,071,151
Number of sequences in database: 33,615
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33615
Number of Hits to DB: 41,529,792
Number of extensions: 1181220
Number of successful extensions: 4440
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 4422
Number of HSP's successfully gapped: 4
Length of query: 331
Length of database: 18,071,151
Length adjustment: 103
Effective length of query: 228
Effective length of database: 14,608,806
Effective search space: 3330807768
Effective search space used: 3330807768
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel44
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20070806C-010504
(993 letters)
Database: RefSeq44_CP.fasta
33,359 sequences; 18,921,627 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_540359.2| PREDICTED: similar to LanC-like protein 2 (Test... 318 4e-87
Alignment gi|XP_536055.1| PREDICTED: similar to LanC-like protein 1 (40 k... 236 2e-62
Alignment gi|XP_548943.2| PREDICTED: similar to LanC lantibiotic syntheta... 144 2e-34
>ref|XP_540359.2| PREDICTED: similar to LanC-like protein 2 (Testis-specific
adriamycin sensitivity protein) [Canis familiaris].
Length = 452
Score = 318 bits (816), Expect = 4e-87
Identities = 146/158 (92%), Positives = 152/158 (96%)
Frame = +2
Query: 2 MRHKRFRSGNYPSSLSNETDRLVHWCHGAPGVIHTLMQAYKVFKEEKYLRDAVECSDVIW 181
+RHKRFRSGNYPSSLSNETDRLVHWCHGAPGVIH LMQAYKVFKEEKYL+DA+ECSDVIW
Sbjct: 295 VRHKRFRSGNYPSSLSNETDRLVHWCHGAPGVIHMLMQAYKVFKEEKYLKDAMECSDVIW 354
Query: 182 QRGLLRKGYGICHGTAGNGYSFLSLYRLTQDKKYLYRACKFAEWCLEYGAHGCRIPDRPY 361
QRGLLRKGYGICHGTAGNGYSFLSLY LTQDKKYLYRACKFAEWCLEYGAHGCRIPDRPY
Sbjct: 355 QRGLLRKGYGICHGTAGNGYSFLSLYHLTQDKKYLYRACKFAEWCLEYGAHGCRIPDRPY 414
Query: 362 SLFEGMAGAIHFLSDILAPETARFPAFELGSSERDPKV 475
SLFEGMAGAIHFLSDILAPET+RFPAFEL +RD K+
Sbjct: 415 SLFEGMAGAIHFLSDILAPETSRFPAFELAPPQRDRKI 452
>ref|XP_536055.1| PREDICTED: similar to LanC-like protein 1 (40 kDa erythrocyte
membrane protein) (p40) [Canis familiaris].
Length = 399
Score = 236 bits (603), Expect = 2e-62
Identities = 103/145 (71%), Positives = 121/145 (83%)
Frame = +2
Query: 14 RFRSGNYPSSLSNETDRLVHWCHGAPGVIHTLMQAYKVFKEEKYLRDAVECSDVIWQRGL 193
+F SGNYP + + D LVHWCHG+PGVI+ L+QAYK F+ E YL DA +C+DVIW+ GL
Sbjct: 255 KFPSGNYPPCVDDNRDLLVHWCHGSPGVIYMLIQAYKAFRGEHYLNDAHQCADVIWRYGL 314
Query: 194 LRKGYGICHGTAGNGYSFLSLYRLTQDKKYLYRACKFAEWCLEYGAHGCRIPDRPYSLFE 373
LRKGYG+CHGTAGN Y+FL+LY LTQD KYLYRACKFAEWCL+YG HGCR PD P+SLFE
Sbjct: 315 LRKGYGLCHGTAGNAYAFLTLYNLTQDMKYLYRACKFAEWCLDYGEHGCRTPDTPFSLFE 374
Query: 374 GMAGAIHFLSDILAPETARFPAFEL 448
GMAG I+FL+D+L P ARFPAFEL
Sbjct: 375 GMAGTIYFLADLLVPTKARFPAFEL 399
>ref|XP_548943.2| PREDICTED: similar to LanC lantibiotic synthetase component C-like
3 [Canis familiaris].
Length = 420
Score = 144 bits (362), Expect = 2e-34
Identities = 69/144 (47%), Positives = 93/144 (64%), Gaps = 4/144 (2%)
Frame = +2
Query: 29 NYPSSLSNETDR---LVHWCHGAPGVIHTLMQAYKVFKEEKYLRDAVECSDVIWQRGLLR 199
N+P L +R LVHWCHGAPG+ + +AY V K+ +YL + C ++ WQ+GLL+
Sbjct: 275 NWPPELGEAIERENELVHWCHGAPGIAYLFAKAYLVSKKPQYLDTCIRCGELTWQKGLLK 334
Query: 200 KGYGICHGTAGNGYSFLSLYRLTQDKKYLYRACKFAEWCL-EYGAHGCRIPDRPYSLFEG 376
KG GICHG AG+ Y FL LYRLT + KY+YRA +FAE+ E G R+ + YSL+EG
Sbjct: 335 KGPGICHGVAGSAYVFLLLYRLTGNSKYIYRAQRFAEFLFTEEFKAGSRVLESIYSLYEG 394
Query: 377 MAGAIHFLSDILAPETARFPAFEL 448
+G + FL D+L P A FP F +
Sbjct: 395 FSGTVCFLIDLLQPNQAEFPLFSV 418
Database: RefSeq44_CP.fasta
Posted date: Nov 15, 2010 4:36 PM
Number of letters in database: 18,921,627
Number of sequences in database: 33,359
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33359
Number of Hits to DB: 42,340,832
Number of extensions: 1184595
Number of successful extensions: 4174
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 4163
Number of HSP's successfully gapped: 3
Length of query: 331
Length of database: 18,921,627
Length adjustment: 103
Effective length of query: 228
Effective length of database: 15,485,650
Effective search space: 3530728200
Effective search space used: 3530728200
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel44
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20070806C-010504
(993 letters)
Database: RefSeq44_HP.fasta
33,950 sequences; 18,324,212 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_061167.1| lanC-like protein 2 [Homo sapiens]. 315 3e-86
Alignment gi|NP_006046.1| lanC-like protein 1 [Homo sapiens]. 244 9e-65
Alignment gi|NP_001130047.1| lanC-like protein 1 [Homo sapiens]. 244 9e-65
Alignment gi|NP_001130046.1| lanC-like protein 1 [Homo sapiens]. 244 9e-65
Alignment gi|NP_001163802.1| lanC-like protein 3 isoform 2 [Homo sapiens]. 142 4e-34
Alignment gi|NP_940913.1| lanC-like protein 3 isoform 1 [Homo sapiens]. 108 6e-24
>ref|NP_061167.1| lanC-like protein 2 [Homo sapiens].
Length = 450
Score = 315 bits (808), Expect = 3e-86
Identities = 143/155 (92%), Positives = 152/155 (98%)
Frame = +2
Query: 2 MRHKRFRSGNYPSSLSNETDRLVHWCHGAPGVIHTLMQAYKVFKEEKYLRDAVECSDVIW 181
+RHK+FRSGNYPSSLSNETDRLVHWCHGAPGVIH LMQAYKVFKEEKYL++A+ECSDVIW
Sbjct: 296 VRHKKFRSGNYPSSLSNETDRLVHWCHGAPGVIHMLMQAYKVFKEEKYLKEAMECSDVIW 355
Query: 182 QRGLLRKGYGICHGTAGNGYSFLSLYRLTQDKKYLYRACKFAEWCLEYGAHGCRIPDRPY 361
QRGLLRKGYGICHGTAGNGYSFLSLYRLTQDKKYLYRACKFAEWCL+YGAHGCRIPDRPY
Sbjct: 356 QRGLLRKGYGICHGTAGNGYSFLSLYRLTQDKKYLYRACKFAEWCLDYGAHGCRIPDRPY 415
Query: 362 SLFEGMAGAIHFLSDILAPETARFPAFELGSSERD 466
SLFEGMAGAIHFLSD+L PET+RFPAFEL SS+RD
Sbjct: 416 SLFEGMAGAIHFLSDVLGPETSRFPAFELDSSKRD 450
>ref|NP_006046.1| lanC-like protein 1 [Homo sapiens].
Length = 399
Score = 244 bits (623), Expect = 9e-65
Identities = 107/145 (73%), Positives = 124/145 (85%)
Frame = +2
Query: 14 RFRSGNYPSSLSNETDRLVHWCHGAPGVIHTLMQAYKVFKEEKYLRDAVECSDVIWQRGL 193
+F SGNYP + + D LVHWCHGAPGVI+ L+QAYKVF+EEKYL DA +C+DVIWQ GL
Sbjct: 255 KFPSGNYPPCIGDNRDLLVHWCHGAPGVIYMLIQAYKVFREEKYLCDAYQCADVIWQYGL 314
Query: 194 LRKGYGICHGTAGNGYSFLSLYRLTQDKKYLYRACKFAEWCLEYGAHGCRIPDRPYSLFE 373
L+KGYG+CHG+AGN Y+FL+LY LTQD KYLYRACKFAEWCLEYG HGCR PD P+SLFE
Sbjct: 315 LKKGYGLCHGSAGNAYAFLTLYNLTQDMKYLYRACKFAEWCLEYGEHGCRTPDTPFSLFE 374
Query: 374 GMAGAIHFLSDILAPETARFPAFEL 448
GMAG I+FL+D+L P ARFPAFEL
Sbjct: 375 GMAGTIYFLADLLVPTKARFPAFEL 399
>ref|NP_001130047.1| lanC-like protein 1 [Homo sapiens].
Length = 399
Score = 244 bits (623), Expect = 9e-65
Identities = 107/145 (73%), Positives = 124/145 (85%)
Frame = +2
Query: 14 RFRSGNYPSSLSNETDRLVHWCHGAPGVIHTLMQAYKVFKEEKYLRDAVECSDVIWQRGL 193
+F SGNYP + + D LVHWCHGAPGVI+ L+QAYKVF+EEKYL DA +C+DVIWQ GL
Sbjct: 255 KFPSGNYPPCIGDNRDLLVHWCHGAPGVIYMLIQAYKVFREEKYLCDAYQCADVIWQYGL 314
Query: 194 LRKGYGICHGTAGNGYSFLSLYRLTQDKKYLYRACKFAEWCLEYGAHGCRIPDRPYSLFE 373
L+KGYG+CHG+AGN Y+FL+LY LTQD KYLYRACKFAEWCLEYG HGCR PD P+SLFE
Sbjct: 315 LKKGYGLCHGSAGNAYAFLTLYNLTQDMKYLYRACKFAEWCLEYGEHGCRTPDTPFSLFE 374
Query: 374 GMAGAIHFLSDILAPETARFPAFEL 448
GMAG I+FL+D+L P ARFPAFEL
Sbjct: 375 GMAGTIYFLADLLVPTKARFPAFEL 399
>ref|NP_001130046.1| lanC-like protein 1 [Homo sapiens].
Length = 399
Score = 244 bits (623), Expect = 9e-65
Identities = 107/145 (73%), Positives = 124/145 (85%)
Frame = +2
Query: 14 RFRSGNYPSSLSNETDRLVHWCHGAPGVIHTLMQAYKVFKEEKYLRDAVECSDVIWQRGL 193
+F SGNYP + + D LVHWCHGAPGVI+ L+QAYKVF+EEKYL DA +C+DVIWQ GL
Sbjct: 255 KFPSGNYPPCIGDNRDLLVHWCHGAPGVIYMLIQAYKVFREEKYLCDAYQCADVIWQYGL 314
Query: 194 LRKGYGICHGTAGNGYSFLSLYRLTQDKKYLYRACKFAEWCLEYGAHGCRIPDRPYSLFE 373
L+KGYG+CHG+AGN Y+FL+LY LTQD KYLYRACKFAEWCLEYG HGCR PD P+SLFE
Sbjct: 315 LKKGYGLCHGSAGNAYAFLTLYNLTQDMKYLYRACKFAEWCLEYGEHGCRTPDTPFSLFE 374
Query: 374 GMAGAIHFLSDILAPETARFPAFEL 448
GMAG I+FL+D+L P ARFPAFEL
Sbjct: 375 GMAGTIYFLADLLVPTKARFPAFEL 399
>ref|NP_001163802.1| lanC-like protein 3 isoform 2 [Homo sapiens].
Length = 420
Score = 142 bits (359), Expect = 4e-34
Identities = 68/144 (47%), Positives = 93/144 (64%), Gaps = 4/144 (2%)
Frame = +2
Query: 29 NYPSSLSNETDR---LVHWCHGAPGVIHTLMQAYKVFKEEKYLRDAVECSDVIWQRGLLR 199
N+P L +R LVHWCHGAPG+ + +AY V K+ +YL + C ++ WQ+GLL+
Sbjct: 275 NWPPELGETIERENELVHWCHGAPGIAYLFAKAYLVSKKPQYLDTCIRCGELTWQKGLLK 334
Query: 200 KGYGICHGTAGNGYSFLSLYRLTQDKKYLYRACKFAEWCL-EYGAHGCRIPDRPYSLFEG 376
KG GICHG AG+ Y FL LYRLT + KY+YRA +FA++ E G R+ + YSL+EG
Sbjct: 335 KGPGICHGVAGSAYVFLLLYRLTGNSKYIYRAQRFAQFLFTEEFKAGSRVLESIYSLYEG 394
Query: 377 MAGAIHFLSDILAPETARFPAFEL 448
+G + FL D+L P A FP F +
Sbjct: 395 FSGTVCFLIDLLQPNQAEFPLFSV 418
>ref|NP_940913.1| lanC-like protein 3 isoform 1 [Homo sapiens].
Length = 388
Score = 108 bits (271), Expect = 6e-24
Identities = 48/92 (52%), Positives = 63/92 (68%), Gaps = 3/92 (3%)
Frame = +2
Query: 29 NYPSSLSNETDR---LVHWCHGAPGVIHTLMQAYKVFKEEKYLRDAVECSDVIWQRGLLR 199
N+P L +R LVHWCHGAPG+ + +AY V K+ +YL + C ++ WQ+GLL+
Sbjct: 275 NWPPELGETIERENELVHWCHGAPGIAYLFAKAYLVSKKPQYLDTCIRCGELTWQKGLLK 334
Query: 200 KGYGICHGTAGNGYSFLSLYRLTQDKKYLYRA 295
KG GICHG AG+ Y FL LYRLT + KY+YRA
Sbjct: 335 KGPGICHGVAGSAYVFLLLYRLTGNSKYIYRA 366
Database: RefSeq44_HP.fasta
Posted date: Nov 15, 2010 4:36 PM
Number of letters in database: 18,324,212
Number of sequences in database: 33,950
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33950
Number of Hits to DB: 41,811,199
Number of extensions: 1175711
Number of successful extensions: 4104
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 4073
Number of HSP's successfully gapped: 6
Length of query: 331
Length of database: 18,324,212
Length adjustment: 103
Effective length of query: 228
Effective length of database: 14,827,362
Effective search space: 3380638536
Effective search space used: 3380638536
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel44
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20070806C-010504
(993 letters)
Database: RefSeq44_MP.fasta
29,866 sequences; 15,452,059 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_598498.1| lanC-like protein 2 [Mus musculus]. 310 8e-85
Alignment gi|NP_001177913.1| lanC-like protein 1 [Mus musculus]. 238 5e-63
Alignment gi|NP_067270.1| lanC-like protein 1 [Mus musculus]. 238 5e-63
Alignment gi|NP_001177914.1| lanC-like protein 1 [Mus musculus]. 238 5e-63
Alignment gi|NP_775590.2| lanC-like protein 3 [Mus musculus]. 142 3e-34
>ref|NP_598498.1| lanC-like protein 2 [Mus musculus].
Length = 450
Score = 310 bits (795), Expect = 8e-85
Identities = 139/155 (89%), Positives = 151/155 (97%)
Frame = +2
Query: 2 MRHKRFRSGNYPSSLSNETDRLVHWCHGAPGVIHTLMQAYKVFKEEKYLRDAVECSDVIW 181
+RHK+FRSGNYPSSLSNETDRLVHWCHGAPGVIH L+QAY+VFKEEKYL++A+ECSDVIW
Sbjct: 296 VRHKKFRSGNYPSSLSNETDRLVHWCHGAPGVIHVLLQAYQVFKEEKYLKEAMECSDVIW 355
Query: 182 QRGLLRKGYGICHGTAGNGYSFLSLYRLTQDKKYLYRACKFAEWCLEYGAHGCRIPDRPY 361
QRGLLRKGYGICHGT+GNGYSFLSLYRLTQDKKYLYRACKFAEWCL+YGAHGCRIPDRPY
Sbjct: 356 QRGLLRKGYGICHGTSGNGYSFLSLYRLTQDKKYLYRACKFAEWCLDYGAHGCRIPDRPY 415
Query: 362 SLFEGMAGAIHFLSDILAPETARFPAFELGSSERD 466
SLFEGMAGA+HFLSDIL PETARFPAFELG ++D
Sbjct: 416 SLFEGMAGAVHFLSDILVPETARFPAFELGFLQKD 450
>ref|NP_001177913.1| lanC-like protein 1 [Mus musculus].
Length = 399
Score = 238 bits (607), Expect = 5e-63
Identities = 105/145 (72%), Positives = 122/145 (84%)
Frame = +2
Query: 14 RFRSGNYPSSLSNETDRLVHWCHGAPGVIHTLMQAYKVFKEEKYLRDAVECSDVIWQRGL 193
+F SGNYP L + D LVHWCHGAPGVI+ L+QAYKVFKEE+YL DA +C+DVIWQ GL
Sbjct: 255 KFPSGNYPPCLDDTRDLLVHWCHGAPGVIYMLIQAYKVFKEERYLCDAQQCADVIWQYGL 314
Query: 194 LRKGYGICHGTAGNGYSFLSLYRLTQDKKYLYRACKFAEWCLEYGAHGCRIPDRPYSLFE 373
L+KGYG+CHG AGN Y+FL+LY LTQD KYLYRACKFAEWCL+YG HGCR D P+SLFE
Sbjct: 315 LKKGYGLCHGAAGNAYAFLALYNLTQDLKYLYRACKFAEWCLDYGEHGCRTADTPFSLFE 374
Query: 374 GMAGAIHFLSDILAPETARFPAFEL 448
GMAG I+FL+D+L P A+FPAFEL
Sbjct: 375 GMAGTIYFLADLLVPTKAKFPAFEL 399
>ref|NP_067270.1| lanC-like protein 1 [Mus musculus].
Length = 399
Score = 238 bits (607), Expect = 5e-63
Identities = 105/145 (72%), Positives = 122/145 (84%)
Frame = +2
Query: 14 RFRSGNYPSSLSNETDRLVHWCHGAPGVIHTLMQAYKVFKEEKYLRDAVECSDVIWQRGL 193
+F SGNYP L + D LVHWCHGAPGVI+ L+QAYKVFKEE+YL DA +C+DVIWQ GL
Sbjct: 255 KFPSGNYPPCLDDTRDLLVHWCHGAPGVIYMLIQAYKVFKEERYLCDAQQCADVIWQYGL 314
Query: 194 LRKGYGICHGTAGNGYSFLSLYRLTQDKKYLYRACKFAEWCLEYGAHGCRIPDRPYSLFE 373
L+KGYG+CHG AGN Y+FL+LY LTQD KYLYRACKFAEWCL+YG HGCR D P+SLFE
Sbjct: 315 LKKGYGLCHGAAGNAYAFLALYNLTQDLKYLYRACKFAEWCLDYGEHGCRTADTPFSLFE 374
Query: 374 GMAGAIHFLSDILAPETARFPAFEL 448
GMAG I+FL+D+L P A+FPAFEL
Sbjct: 375 GMAGTIYFLADLLVPTKAKFPAFEL 399
>ref|NP_001177914.1| lanC-like protein 1 [Mus musculus].
Length = 399
Score = 238 bits (607), Expect = 5e-63
Identities = 105/145 (72%), Positives = 122/145 (84%)
Frame = +2
Query: 14 RFRSGNYPSSLSNETDRLVHWCHGAPGVIHTLMQAYKVFKEEKYLRDAVECSDVIWQRGL 193
+F SGNYP L + D LVHWCHGAPGVI+ L+QAYKVFKEE+YL DA +C+DVIWQ GL
Sbjct: 255 KFPSGNYPPCLDDTRDLLVHWCHGAPGVIYMLIQAYKVFKEERYLCDAQQCADVIWQYGL 314
Query: 194 LRKGYGICHGTAGNGYSFLSLYRLTQDKKYLYRACKFAEWCLEYGAHGCRIPDRPYSLFE 373
L+KGYG+CHG AGN Y+FL+LY LTQD KYLYRACKFAEWCL+YG HGCR D P+SLFE
Sbjct: 315 LKKGYGLCHGAAGNAYAFLALYNLTQDLKYLYRACKFAEWCLDYGEHGCRTADTPFSLFE 374
Query: 374 GMAGAIHFLSDILAPETARFPAFEL 448
GMAG I+FL+D+L P A+FPAFEL
Sbjct: 375 GMAGTIYFLADLLVPTKAKFPAFEL 399
>ref|NP_775590.2| lanC-like protein 3 [Mus musculus].
Length = 420
Score = 142 bits (359), Expect = 3e-34
Identities = 67/144 (46%), Positives = 93/144 (64%), Gaps = 4/144 (2%)
Frame = +2
Query: 29 NYPSSLSNETDR---LVHWCHGAPGVIHTLMQAYKVFKEEKYLRDAVECSDVIWQRGLLR 199
N+P L +R LVHWCHGAPG+ + +AY + K+ +YL + C ++ WQ+GLL+
Sbjct: 275 NWPPELGETIERENELVHWCHGAPGIAYLFAKAYLISKKPQYLDTCIRCGELTWQKGLLK 334
Query: 200 KGYGICHGTAGNGYSFLSLYRLTQDKKYLYRACKFAEWCL-EYGAHGCRIPDRPYSLFEG 376
KG GICHG AG+ Y FL LYRLT + KY+YRA +FA++ E G R+ + YSL+EG
Sbjct: 335 KGPGICHGVAGSAYVFLLLYRLTGNSKYIYRAQRFAQFLFTEEFKSGSRVLESIYSLYEG 394
Query: 377 MAGAIHFLSDILAPETARFPAFEL 448
+G + FL D+L P A FP F +
Sbjct: 395 FSGTVCFLIDLLQPNQAEFPLFSV 418
Database: RefSeq44_MP.fasta
Posted date: Nov 15, 2010 4:36 PM
Number of letters in database: 15,452,059
Number of sequences in database: 29,866
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 29866
Number of Hits to DB: 34,831,969
Number of extensions: 971618
Number of successful extensions: 3566
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 3520
Number of HSP's successfully gapped: 5
Length of query: 331
Length of database: 15,452,059
Length adjustment: 102
Effective length of query: 229
Effective length of database: 12,405,727
Effective search space: 2840911483
Effective search space used: 2840911483
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel44
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20070806C-010504
(993 letters)
Database: RefSeq44_SP.fasta
20,576 sequences; 9,542,844 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_001926406.2| PREDICTED: LanC lantibiotic synthetase compo... 238 3e-63
>ref|XP_001926406.2| PREDICTED: LanC lantibiotic synthetase component C-like 1 [Sus
scrofa].
Length = 171
Score = 238 bits (608), Expect = 3e-63
Identities = 102/145 (70%), Positives = 124/145 (85%)
Frame = +2
Query: 14 RFRSGNYPSSLSNETDRLVHWCHGAPGVIHTLMQAYKVFKEEKYLRDAVECSDVIWQRGL 193
+F SGNYP + + D LVHWCHG+PGVI+ L+QAYKVF+EE+YL DA +C+DVIW+ GL
Sbjct: 27 KFPSGNYPPCVDDTRDLLVHWCHGSPGVIYMLIQAYKVFREERYLNDAYQCADVIWKYGL 86
Query: 194 LRKGYGICHGTAGNGYSFLSLYRLTQDKKYLYRACKFAEWCLEYGAHGCRIPDRPYSLFE 373
L+KGYG+CHGTAGN Y+FL+L+ LTQD KYLYRACKFAEWCL+YG HGCR PD P+SLFE
Sbjct: 87 LKKGYGLCHGTAGNAYAFLTLFNLTQDMKYLYRACKFAEWCLDYGEHGCRTPDTPFSLFE 146
Query: 374 GMAGAIHFLSDILAPETARFPAFEL 448
GMAG I+FL+D+L P A+FPAFEL
Sbjct: 147 GMAGTIYFLADLLVPTKAKFPAFEL 171
Database: RefSeq44_SP.fasta
Posted date: Nov 15, 2010 4:36 PM
Number of letters in database: 9,542,844
Number of sequences in database: 20,576
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 20576
Number of Hits to DB: 22,085,412
Number of extensions: 627922
Number of successful extensions: 2330
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 2323
Number of HSP's successfully gapped: 1
Length of query: 331
Length of database: 9,542,844
Length adjustment: 98
Effective length of query: 233
Effective length of database: 7,526,396
Effective search space: 1753650268
Effective search space used: 1753650268
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)