Search to RefSeqBP_Rel44
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20070806S-035118
(962 letters)
Database: RefSeq44_BP.fasta
33,615 sequences; 18,071,151 total letters
Searching..................................................done
***** No hits found ******
Database: RefSeq44_BP.fasta
Posted date: Nov 15, 2010 4:36 PM
Number of letters in database: 18,071,151
Number of sequences in database: 33,615
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33615
Number of Hits to DB: 34,058,825
Number of extensions: 943870
Number of successful extensions: 5236
Number of sequences better than 1.0e-05: 0
Number of HSP's gapped: 5149
Number of HSP's successfully gapped: 0
Length of query: 320
Length of database: 18,071,151
Length adjustment: 102
Effective length of query: 218
Effective length of database: 14,642,421
Effective search space: 3192047778
Effective search space used: 3192047778
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel44
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20070806S-035118
(962 letters)
Database: RefSeq44_CP.fasta
33,359 sequences; 18,921,627 total letters
Searching..................................................done
***** No hits found ******
Database: RefSeq44_CP.fasta
Posted date: Nov 15, 2010 4:36 PM
Number of letters in database: 18,921,627
Number of sequences in database: 33,359
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33359
Number of Hits to DB: 34,995,275
Number of extensions: 963396
Number of successful extensions: 5399
Number of sequences better than 1.0e-05: 0
Number of HSP's gapped: 5275
Number of HSP's successfully gapped: 0
Length of query: 320
Length of database: 18,921,627
Length adjustment: 103
Effective length of query: 217
Effective length of database: 15,485,650
Effective search space: 3360386050
Effective search space used: 3360386050
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel44
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20070806S-035118
(962 letters)
Database: RefSeq44_HP.fasta
33,950 sequences; 18,324,212 total letters
Searching..................................................done
***** No hits found ******
Database: RefSeq44_HP.fasta
Posted date: Nov 15, 2010 4:36 PM
Number of letters in database: 18,324,212
Number of sequences in database: 33,950
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33950
Number of Hits to DB: 34,343,188
Number of extensions: 941234
Number of successful extensions: 4818
Number of sequences better than 1.0e-05: 0
Number of HSP's gapped: 4740
Number of HSP's successfully gapped: 0
Length of query: 320
Length of database: 18,324,212
Length adjustment: 103
Effective length of query: 217
Effective length of database: 14,827,362
Effective search space: 3217537554
Effective search space used: 3217537554
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel44
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20070806S-035118
(962 letters)
Database: RefSeq44_MP.fasta
29,866 sequences; 15,452,059 total letters
Searching..................................................done
***** No hits found ******
Database: RefSeq44_MP.fasta
Posted date: Nov 15, 2010 4:36 PM
Number of letters in database: 15,452,059
Number of sequences in database: 29,866
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 29866
Number of Hits to DB: 28,496,941
Number of extensions: 760930
Number of successful extensions: 3750
Number of sequences better than 1.0e-05: 0
Number of HSP's gapped: 3685
Number of HSP's successfully gapped: 0
Length of query: 320
Length of database: 15,452,059
Length adjustment: 101
Effective length of query: 219
Effective length of database: 12,435,593
Effective search space: 2723394867
Effective search space used: 2723394867
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel44
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20070806S-035118
(962 letters)
Database: RefSeq44_SP.fasta
20,576 sequences; 9,542,844 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_001926115.2| PREDICTED: 28S ribosomal protein S22, mitoch... 77 9e-15
>ref|XP_001926115.2| PREDICTED: 28S ribosomal protein S22, mitochondrial [Sus scrofa].
Length = 323
Score = 77.4 bits (189), Expect = 9e-15
Identities = 40/57 (70%), Positives = 40/57 (70%)
Frame = +3
Query: 3 MATLKASALLRSLQTNSCGTGRVCFPVXXXXXXXXXXXXXXXXCGTGTLCRGLGSES 173
MATLKASALLRSLQTNSCGTGRVCFPV GTGTLCRGLGSES
Sbjct: 1 MATLKASALLRSLQTNSCGTGRVCFPVRARPRPRALLQPLPGASGTGTLCRGLGSES 57
Database: RefSeq44_SP.fasta
Posted date: Nov 15, 2010 4:36 PM
Number of letters in database: 9,542,844
Number of sequences in database: 20,576
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 20576
Number of Hits to DB: 18,107,750
Number of extensions: 504476
Number of successful extensions: 2791
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 2746
Number of HSP's successfully gapped: 1
Length of query: 320
Length of database: 9,542,844
Length adjustment: 98
Effective length of query: 222
Effective length of database: 7,526,396
Effective search space: 1670859912
Effective search space used: 1670859912
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)