Search to RefSeqBP_Rel44
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20070806S-055075
(569 letters)
Database: RefSeq44_BP.fasta
33,615 sequences; 18,071,151 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001094632.1| tropomyosin alpha-4 chain [Bos taurus]. 219 1e-57
Alignment gi|NP_001013608.1| tropomyosin alpha-1 chain [Bos taurus]. 195 3e-50
Alignment gi|NP_001010995.2| tropomyosin beta chain [Bos taurus]. 193 1e-49
Alignment gi|NP_001011674.1| tropomyosin alpha-3 chain [Bos taurus]. 191 3e-49
Alignment gi|XP_002700658.1| PREDICTED: tropomyosin 2, beta-like [Bos tau... 167 6e-42
Alignment gi|XP_001255756.3| PREDICTED: tropomyosin 2, beta-like isoform ... 132 2e-31
Alignment gi|XP_002688135.1| PREDICTED: tropomyosin 4-like [Bos taurus]. 85 5e-17
Alignment gi|XP_874820.3| PREDICTED: tropomyosin 4 isoform 2 [Bos taurus]. 85 5e-17
Alignment gi|XP_002699032.1| PREDICTED: tropomyosin 4-like [Bos taurus]. 84 1e-16
Alignment gi|XP_002688284.1| PREDICTED: tropomyosin 4-like [Bos taurus]. 84 1e-16
>ref|NP_001094632.1| tropomyosin alpha-4 chain [Bos taurus].
Length = 284
Score = 219 bits (558), Expect = 1e-57
Identities = 118/167 (70%), Positives = 137/167 (82%)
Frame = +1
Query: 67 MEAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVGEELTHLHKKLKGTEDELDLY 246
MEAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQV EELTHL KKLK TEDELD Y
Sbjct: 1 MEAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLKETEDELDKY 60
Query: 247 SENLKDAQE*LELSYMKASDSKGDVAALNQRIQLPQDEKHRSQERLSTALPNLEEAEQAA 426
SENLKDAQE LEL+ KASD++GDVAALN+RIQL ++E R+QERL+TAL LEEAE+AA
Sbjct: 61 SENLKDAQEKLELTEKKASDAEGDVAALNRRIQLVEEELDRAQERLATALQKLEEAEKAA 120
Query: 427 DATQRRTKVTKTRALYESEKMVIHDKQLAEDKSTADDAYDHFKEAAR 567
D ++R KV + RA+ + EKM I + QL E K A++A ++E AR
Sbjct: 121 DESERGMKVIENRAMKDEEKMEIQEMQLKEAKHIAEEADRKYEEVAR 167
>ref|NP_001013608.1| tropomyosin alpha-1 chain [Bos taurus].
Length = 284
Score = 195 bits (495), Expect = 3e-50
Identities = 105/167 (62%), Positives = 132/167 (79%)
Frame = +1
Query: 67 MEAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVGEELTHLHKKLKGTEDELDLY 246
M+AIKKKMQMLKLDKENA+DRAEQAE+DKKAAE++ KQ+ +EL L KKLK TEDELD Y
Sbjct: 1 MDAIKKKMQMLKLDKENALDRAEQAEADKKAAEDRSKQLEDELVSLQKKLKATEDELDKY 60
Query: 247 SENLKDAQE*LELSYMKASDSKGDVAALNQRIQLPQDEKHRSQERLSTALPNLEEAEQAA 426
SE LKDAQE LEL+ KA+D++ DVA+LN+RIQL ++E R+QERL+TAL LEEAE+AA
Sbjct: 61 SEALKDAQEKLELAEKKATDAEADVASLNRRIQLVEEELDRAQERLATALQKLEEAEKAA 120
Query: 427 DATQRRTKVTKTRALYESEKMVIHDKQLAEDKSTADDAYDHFKEAAR 567
D ++R KV ++RA + EKM I + QL E K A+DA ++E AR
Sbjct: 121 DESERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAEDADRKYEEVAR 167
>ref|NP_001010995.2| tropomyosin beta chain [Bos taurus].
Length = 284
Score = 193 bits (490), Expect = 1e-49
Identities = 101/167 (60%), Positives = 132/167 (79%)
Frame = +1
Query: 67 MEAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVGEELTHLHKKLKGTEDELDLY 246
M+AIKKKMQMLKLDKENAIDRAEQAE+DKK AE++CKQ+ EE L KKLKGTEDE++ Y
Sbjct: 1 MDAIKKKMQMLKLDKENAIDRAEQAEADKKQAEDRCKQLEEEQQALQKKLKGTEDEVEKY 60
Query: 247 SENLKDAQE*LELSYMKASDSKGDVAALNQRIQLPQDEKHRSQERLSTALPNLEEAEQAA 426
SE++KDAQE LE + KA+D++ DVA+LN+RIQL ++E R+QERL+TAL LEEAE+AA
Sbjct: 61 SESVKDAQEKLEQAEKKATDAEADVASLNRRIQLVEEELDRAQERLATALQKLEEAEKAA 120
Query: 427 DATQRRTKVTKTRALYESEKMVIHDKQLAEDKSTADDAYDHFKEAAR 567
D ++R KV + RA+ + EKM + + QL E K A+D+ ++E AR
Sbjct: 121 DESERGMKVIENRAMKDEEKMELQEMQLKEAKHIAEDSDRKYEEVAR 167
>ref|NP_001011674.1| tropomyosin alpha-3 chain [Bos taurus].
Length = 284
Score = 191 bits (486), Expect = 3e-49
Identities = 102/167 (61%), Positives = 132/167 (79%)
Frame = +1
Query: 67 MEAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVGEELTHLHKKLKGTEDELDLY 246
MEAIKKKMQMLKLDKENA+DRAEQAE+++K AEE+ KQ+ +EL + KKLKGTEDELD Y
Sbjct: 1 MEAIKKKMQMLKLDKENALDRAEQAEAEQKQAEERSKQLEDELAAMQKKLKGTEDELDKY 60
Query: 247 SENLKDAQE*LELSYMKASDSKGDVAALNQRIQLPQDEKHRSQERLSTALPNLEEAEQAA 426
SE LKDAQE LEL+ KA+D++ +VA+LN+RIQL ++E R+QERL+TAL LEEAE+AA
Sbjct: 61 SEALKDAQEKLELAEKKAADAEAEVASLNRRIQLVEEELDRAQERLATALQKLEEAEKAA 120
Query: 427 DATQRRTKVTKTRALYESEKMVIHDKQLAEDKSTADDAYDHFKEAAR 567
D ++R KV + RAL + EKM + + QL E K A++A ++E AR
Sbjct: 121 DESERGMKVIENRALKDEEKMELQEIQLKEAKHIAEEADRKYEEVAR 167
>ref|XP_002700658.1| PREDICTED: tropomyosin 2, beta-like [Bos taurus].
Length = 125
Score = 167 bits (423), Expect = 6e-42
Identities = 87/125 (69%), Positives = 107/125 (85%)
Frame = +1
Query: 67 MEAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVGEELTHLHKKLKGTEDELDLY 246
M+AIKKKMQMLKLDKENA+DRAEQAE+DKKAAE++ KQ+ +EL L KKLK TEDELD Y
Sbjct: 1 MDAIKKKMQMLKLDKENALDRAEQAEADKKAAEDRSKQLEDELVSLQKKLKATEDELDKY 60
Query: 247 SENLKDAQE*LELSYMKASDSKGDVAALNQRIQLPQDEKHRSQERLSTALPNLEEAEQAA 426
SE LKDAQE LEL+ KA+D++ DVA+LN+RIQL ++E R+QERL+TAL LEEAE+AA
Sbjct: 61 SEALKDAQEKLELAEKKATDAEADVASLNRRIQLVEEELDRAQERLATALQKLEEAEKAA 120
Query: 427 DATQR 441
D ++R
Sbjct: 121 DESER 125
>ref|XP_001255756.3| PREDICTED: tropomyosin 2, beta-like isoform 1 [Bos taurus].
Length = 125
Score = 132 bits (332), Expect = 2e-31
Identities = 71/125 (56%), Positives = 96/125 (76%)
Frame = +1
Query: 67 MEAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVGEELTHLHKKLKGTEDELDLY 246
M+AIKKKMQMLKLDKENA+DRAEQAE+DKKAAE++ KQ+ E++ K L+ +EDE D
Sbjct: 1 MDAIKKKMQMLKLDKENALDRAEQAEADKKAAEDRSKQLEEDIAAKEKLLRVSEDERDRV 60
Query: 247 SENLKDAQE*LELSYMKASDSKGDVAALNQRIQLPQDEKHRSQERLSTALPNLEEAEQAA 426
E L A++ L + A+ ++ DVA+LN+RIQL ++E R+QERL+TAL LEEAE+AA
Sbjct: 61 LEELHKAEDSLLAADEAAAKAEADVASLNRRIQLVEEELDRAQERLATALQKLEEAEKAA 120
Query: 427 DATQR 441
D ++R
Sbjct: 121 DESER 125
>ref|XP_002688135.1| PREDICTED: tropomyosin 4-like [Bos taurus].
Length = 248
Score = 84.7 bits (208), Expect = 5e-17
Identities = 46/119 (38%), Positives = 76/119 (63%)
Frame = +1
Query: 211 KLKGTEDELDLYSENLKDAQE*LELSYMKASDSKGDVAALNQRIQLPQDEKHRSQERLST 390
K++ + + D E K Q+ ++ ++ +V +LN+RIQL ++E +R+QERL+T
Sbjct: 13 KIQVLQQQADDAEERAKRLQQKVDGERWAREQAEAEVVSLNRRIQLVEEELNRAQERLAT 72
Query: 391 ALPNLEEAEQAADATQRRTKVTKTRALYESEKMVIHDKQLAEDKSTADDAYDHFKEAAR 567
AL LEEAE+AAD ++R KV + +AL + EKM + + QL E K A++A+ ++E AR
Sbjct: 73 ALQKLEEAEKAADESERVMKVIENQALKDEEKMELQEIQLKEAKHIAEEAHRKYEEVAR 131
>ref|XP_874820.3| PREDICTED: tropomyosin 4 isoform 2 [Bos taurus].
Length = 248
Score = 84.7 bits (208), Expect = 5e-17
Identities = 46/119 (38%), Positives = 76/119 (63%)
Frame = +1
Query: 211 KLKGTEDELDLYSENLKDAQE*LELSYMKASDSKGDVAALNQRIQLPQDEKHRSQERLST 390
K++ + + D E K Q+ ++ ++ +V +LN+RIQL ++E +R+QERL+T
Sbjct: 13 KIQVLQQQADDAEERAKRLQQKVDGERWAREQAEAEVVSLNRRIQLVEEELNRAQERLAT 72
Query: 391 ALPNLEEAEQAADATQRRTKVTKTRALYESEKMVIHDKQLAEDKSTADDAYDHFKEAAR 567
AL LEEAE+AAD ++R KV + +AL + EKM + + QL E K A++A+ ++E AR
Sbjct: 73 ALQKLEEAEKAADESERVMKVIENQALKDEEKMELQEIQLKEAKHIAEEAHRKYEEVAR 131
>ref|XP_002699032.1| PREDICTED: tropomyosin 4-like [Bos taurus].
Length = 248
Score = 83.6 bits (205), Expect = 1e-16
Identities = 54/169 (31%), Positives = 89/169 (52%)
Frame = +1
Query: 61 PAMEAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVGEELTHLHKKLKGTEDELD 240
P +EA+K+K+Q+L+ ++A +RAE+ + + + +Q
Sbjct: 5 PTIEAVKRKIQVLQQQADDAQERAERLQREVEGEGRAREQ-------------------- 44
Query: 241 LYSENLKDAQE*LELSYMKASDSKGDVAALNQRIQLPQDEKHRSQERLSTALPNLEEAEQ 420
++ +VA+LN+RIQL ++E R+QERL+TAL LEEAE+
Sbjct: 45 ----------------------AEAEVASLNRRIQLVEEELDRAQERLATALQKLEEAEK 82
Query: 421 AADATQRRTKVTKTRALYESEKMVIHDKQLAEDKSTADDAYDHFKEAAR 567
AAD ++R KV + +AL + EKM + + QL E K A++A ++E AR
Sbjct: 83 AADESERGMKVIENQALKDEEKMELQEIQLKEAKHIAEEADRKYEEVAR 131
>ref|XP_002688284.1| PREDICTED: tropomyosin 4-like [Bos taurus].
Length = 248
Score = 83.6 bits (205), Expect = 1e-16
Identities = 46/119 (38%), Positives = 75/119 (63%)
Frame = +1
Query: 211 KLKGTEDELDLYSENLKDAQE*LELSYMKASDSKGDVAALNQRIQLPQDEKHRSQERLST 390
K++ + + D E K Q+ +E ++ +V +LN+RIQL ++E +R+QERL+T
Sbjct: 13 KIQVLQQQADDAEERAKCLQQKVEGERWAREQAEAEVVSLNRRIQLVEEELNRAQERLAT 72
Query: 391 ALPNLEEAEQAADATQRRTKVTKTRALYESEKMVIHDKQLAEDKSTADDAYDHFKEAAR 567
L LEEAE+AAD ++R KV + +AL + EKM + + QL E K A++A+ ++E AR
Sbjct: 73 ELQKLEEAEKAADESERVMKVIENQALKDEEKMELQEIQLKEAKHIAEEAHRKYEEVAR 131
Database: RefSeq44_BP.fasta
Posted date: Nov 15, 2010 4:36 PM
Number of letters in database: 18,071,151
Number of sequences in database: 33,615
Lambda K H
0.310 0.124 0.326
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33615
Number of Hits to DB: 15,691,817
Number of extensions: 373983
Number of successful extensions: 1895
Number of sequences better than 1.0e-05: 14
Number of HSP's gapped: 1830
Number of HSP's successfully gapped: 16
Length of query: 189
Length of database: 18,071,151
Length adjustment: 96
Effective length of query: 93
Effective length of database: 14,844,111
Effective search space: 1380502323
Effective search space used: 1380502323
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.3 bits)
S2: 32 (16.9 bits)
Search to RefSeqCP_Rel44
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20070806S-055075
(569 letters)
Database: RefSeq44_CP.fasta
33,359 sequences; 18,921,627 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_866127.1| PREDICTED: similar to tropomyosin 4 isoform 1 i... 222 2e-58
Alignment gi|XP_852641.1| PREDICTED: similar to tropomyosin 1, alpha isof... 222 2e-58
Alignment gi|XP_865307.1| PREDICTED: similar to Tropomyosin 1 alpha chain... 197 5e-51
Alignment gi|XP_865292.1| PREDICTED: similar to tropomyosin 1 alpha chain... 197 5e-51
Alignment gi|XP_535506.2| PREDICTED: similar to tropomyosin 1 alpha chain... 197 5e-51
Alignment gi|XP_865257.1| PREDICTED: similar to tropomyosin 1 alpha chain... 197 5e-51
Alignment gi|XP_864999.1| PREDICTED: similar to tropomyosin 1, alpha isof... 197 5e-51
Alignment gi|XP_864981.1| PREDICTED: similar to tropomyosin 1 alpha chain... 197 5e-51
Alignment gi|XP_864907.1| PREDICTED: similar to Tropomyosin 1 alpha chain... 197 5e-51
Alignment gi|XP_864888.1| PREDICTED: similar to Tropomyosin 1 alpha chain... 197 5e-51
>ref|XP_866127.1| PREDICTED: similar to tropomyosin 4 isoform 1 isoform 5 [Canis
familiaris].
Length = 284
Score = 222 bits (566), Expect = 2e-58
Identities = 119/167 (71%), Positives = 138/167 (82%)
Frame = +1
Query: 67 MEAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVGEELTHLHKKLKGTEDELDLY 246
MEAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQV EELTHL KKLKGTEDELD Y
Sbjct: 1 MEAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLKGTEDELDKY 60
Query: 247 SENLKDAQE*LELSYMKASDSKGDVAALNQRIQLPQDEKHRSQERLSTALPNLEEAEQAA 426
SENLKDAQE LEL+ KASD++GDVAALN+RIQL ++E R+QERL+TAL LEEAE+AA
Sbjct: 61 SENLKDAQEKLELTEKKASDAEGDVAALNRRIQLVEEELDRAQERLATALQKLEEAEKAA 120
Query: 427 DATQRRTKVTKTRALYESEKMVIHDKQLAEDKSTADDAYDHFKEAAR 567
D ++R KV + RA+ + EKM I + QL E K A++A ++E AR
Sbjct: 121 DESERGMKVIENRAMKDEEKMEIQEMQLKEAKHIAEEADRKYEEVAR 167
>ref|XP_852641.1| PREDICTED: similar to tropomyosin 1, alpha isoform 2 [Canis
familiaris].
Length = 284
Score = 222 bits (566), Expect = 2e-58
Identities = 119/167 (71%), Positives = 138/167 (82%)
Frame = +1
Query: 67 MEAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVGEELTHLHKKLKGTEDELDLY 246
MEAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQV EELTHL KKLKGTEDELD Y
Sbjct: 1 MEAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVEEELTHLQKKLKGTEDELDKY 60
Query: 247 SENLKDAQE*LELSYMKASDSKGDVAALNQRIQLPQDEKHRSQERLSTALPNLEEAEQAA 426
SENLKDAQE LEL+ KASD++GDVAALN+RIQL ++E R+QERL+TAL LEEAE+AA
Sbjct: 61 SENLKDAQEKLELTEKKASDAEGDVAALNRRIQLVEEELDRAQERLATALQKLEEAEKAA 120
Query: 427 DATQRRTKVTKTRALYESEKMVIHDKQLAEDKSTADDAYDHFKEAAR 567
D ++R KV + RA+ + EKM I + QL E K A++A ++E AR
Sbjct: 121 DESERGMKVIENRAMKDEEKMEIQEMQLKEAKHIAEEADRKYEEVAR 167
>ref|XP_865307.1| PREDICTED: similar to Tropomyosin 1 alpha chain (Alpha-tropomyosin)
isoform 26 [Canis familiaris].
Length = 284
Score = 197 bits (501), Expect = 5e-51
Identities = 106/167 (63%), Positives = 133/167 (79%)
Frame = +1
Query: 67 MEAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVGEELTHLHKKLKGTEDELDLY 246
M+AIKKKMQMLKLDKENA+DRAEQAE+DKKAAE++ KQ+ +EL L KKLKGTEDELD Y
Sbjct: 1 MDAIKKKMQMLKLDKENALDRAEQAEADKKAAEDRSKQLEDELVSLQKKLKGTEDELDKY 60
Query: 247 SENLKDAQE*LELSYMKASDSKGDVAALNQRIQLPQDEKHRSQERLSTALPNLEEAEQAA 426
SE LKDAQE LEL+ KA+D++ DVA+LN+RIQL ++E R+QERL+TAL LEEAE+AA
Sbjct: 61 SEALKDAQEKLELAEKKATDAEADVASLNRRIQLVEEELDRAQERLATALQKLEEAEKAA 120
Query: 427 DATQRRTKVTKTRALYESEKMVIHDKQLAEDKSTADDAYDHFKEAAR 567
D ++R KV ++RA + EKM I + QL E K A+DA ++E AR
Sbjct: 121 DESERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAEDADRKYEEVAR 167
>ref|XP_865292.1| PREDICTED: similar to tropomyosin 1 alpha chain isoform 5 isoform
25 [Canis familiaris].
Length = 218
Score = 197 bits (501), Expect = 5e-51
Identities = 106/167 (63%), Positives = 133/167 (79%)
Frame = +1
Query: 67 MEAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVGEELTHLHKKLKGTEDELDLY 246
M+AIKKKMQMLKLDKENA+DRAEQAE+DKKAAE++ KQ+ +EL L KKLKGTEDELD Y
Sbjct: 1 MDAIKKKMQMLKLDKENALDRAEQAEADKKAAEDRSKQLEDELVSLQKKLKGTEDELDKY 60
Query: 247 SENLKDAQE*LELSYMKASDSKGDVAALNQRIQLPQDEKHRSQERLSTALPNLEEAEQAA 426
SE LKDAQE LEL+ KA+D++ DVA+LN+RIQL ++E R+QERL+TAL LEEAE+AA
Sbjct: 61 SEALKDAQEKLELAEKKATDAEADVASLNRRIQLVEEELDRAQERLATALQKLEEAEKAA 120
Query: 427 DATQRRTKVTKTRALYESEKMVIHDKQLAEDKSTADDAYDHFKEAAR 567
D ++R KV ++RA + EKM I + QL E K A+DA ++E AR
Sbjct: 121 DESERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAEDADRKYEEVAR 167
>ref|XP_535506.2| PREDICTED: similar to tropomyosin 1 alpha chain isoform 5 isoform 1
[Canis familiaris].
Length = 284
Score = 197 bits (501), Expect = 5e-51
Identities = 106/167 (63%), Positives = 133/167 (79%)
Frame = +1
Query: 67 MEAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVGEELTHLHKKLKGTEDELDLY 246
M+AIKKKMQMLKLDKENA+DRAEQAE+DKKAAE++ KQ+ +EL L KKLKGTEDELD Y
Sbjct: 1 MDAIKKKMQMLKLDKENALDRAEQAEADKKAAEDRSKQLEDELVSLQKKLKGTEDELDKY 60
Query: 247 SENLKDAQE*LELSYMKASDSKGDVAALNQRIQLPQDEKHRSQERLSTALPNLEEAEQAA 426
SE LKDAQE LEL+ KA+D++ DVA+LN+RIQL ++E R+QERL+TAL LEEAE+AA
Sbjct: 61 SEALKDAQEKLELAEKKATDAEADVASLNRRIQLVEEELDRAQERLATALQKLEEAEKAA 120
Query: 427 DATQRRTKVTKTRALYESEKMVIHDKQLAEDKSTADDAYDHFKEAAR 567
D ++R KV ++RA + EKM I + QL E K A+DA ++E AR
Sbjct: 121 DESERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAEDADRKYEEVAR 167
>ref|XP_865257.1| PREDICTED: similar to tropomyosin 1 alpha chain isoform 5 isoform
24 [Canis familiaris].
Length = 284
Score = 197 bits (501), Expect = 5e-51
Identities = 106/167 (63%), Positives = 133/167 (79%)
Frame = +1
Query: 67 MEAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVGEELTHLHKKLKGTEDELDLY 246
M+AIKKKMQMLKLDKENA+DRAEQAE+DKKAAE++ KQ+ +EL L KKLKGTEDELD Y
Sbjct: 1 MDAIKKKMQMLKLDKENALDRAEQAEADKKAAEDRSKQLEDELVSLQKKLKGTEDELDKY 60
Query: 247 SENLKDAQE*LELSYMKASDSKGDVAALNQRIQLPQDEKHRSQERLSTALPNLEEAEQAA 426
SE LKDAQE LEL+ KA+D++ DVA+LN+RIQL ++E R+QERL+TAL LEEAE+AA
Sbjct: 61 SEALKDAQEKLELAEKKATDAEADVASLNRRIQLVEEELDRAQERLATALQKLEEAEKAA 120
Query: 427 DATQRRTKVTKTRALYESEKMVIHDKQLAEDKSTADDAYDHFKEAAR 567
D ++R KV ++RA + EKM I + QL E K A+DA ++E AR
Sbjct: 121 DESERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAEDADRKYEEVAR 167
>ref|XP_864999.1| PREDICTED: similar to tropomyosin 1, alpha isoform 11 [Canis
familiaris].
Length = 284
Score = 197 bits (501), Expect = 5e-51
Identities = 106/167 (63%), Positives = 133/167 (79%)
Frame = +1
Query: 67 MEAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVGEELTHLHKKLKGTEDELDLY 246
M+AIKKKMQMLKLDKENA+DRAEQAE+DKKAAE++ KQ+ +EL L KKLKGTEDELD Y
Sbjct: 1 MDAIKKKMQMLKLDKENALDRAEQAEADKKAAEDRSKQLEDELVSLQKKLKGTEDELDKY 60
Query: 247 SENLKDAQE*LELSYMKASDSKGDVAALNQRIQLPQDEKHRSQERLSTALPNLEEAEQAA 426
SE LKDAQE LEL+ KA+D++ DVA+LN+RIQL ++E R+QERL+TAL LEEAE+AA
Sbjct: 61 SEALKDAQEKLELAEKKATDAEADVASLNRRIQLVEEELDRAQERLATALQKLEEAEKAA 120
Query: 427 DATQRRTKVTKTRALYESEKMVIHDKQLAEDKSTADDAYDHFKEAAR 567
D ++R KV ++RA + EKM I + QL E K A+DA ++E AR
Sbjct: 121 DESERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAEDADRKYEEVAR 167
>ref|XP_864981.1| PREDICTED: similar to tropomyosin 1 alpha chain isoform 4 isoform
10 [Canis familiaris].
Length = 284
Score = 197 bits (501), Expect = 5e-51
Identities = 106/167 (63%), Positives = 133/167 (79%)
Frame = +1
Query: 67 MEAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVGEELTHLHKKLKGTEDELDLY 246
M+AIKKKMQMLKLDKENA+DRAEQAE+DKKAAE++ KQ+ +EL L KKLKGTEDELD Y
Sbjct: 1 MDAIKKKMQMLKLDKENALDRAEQAEADKKAAEDRSKQLEDELVSLQKKLKGTEDELDKY 60
Query: 247 SENLKDAQE*LELSYMKASDSKGDVAALNQRIQLPQDEKHRSQERLSTALPNLEEAEQAA 426
SE LKDAQE LEL+ KA+D++ DVA+LN+RIQL ++E R+QERL+TAL LEEAE+AA
Sbjct: 61 SEALKDAQEKLELAEKKATDAEADVASLNRRIQLVEEELDRAQERLATALQKLEEAEKAA 120
Query: 427 DATQRRTKVTKTRALYESEKMVIHDKQLAEDKSTADDAYDHFKEAAR 567
D ++R KV ++RA + EKM I + QL E K A+DA ++E AR
Sbjct: 121 DESERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAEDADRKYEEVAR 167
>ref|XP_864907.1| PREDICTED: similar to Tropomyosin 1 alpha chain (Alpha-tropomyosin)
isoform 6 [Canis familiaris].
Length = 284
Score = 197 bits (501), Expect = 5e-51
Identities = 106/167 (63%), Positives = 133/167 (79%)
Frame = +1
Query: 67 MEAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVGEELTHLHKKLKGTEDELDLY 246
M+AIKKKMQMLKLDKENA+DRAEQAE+DKKAAE++ KQ+ +EL L KKLKGTEDELD Y
Sbjct: 1 MDAIKKKMQMLKLDKENALDRAEQAEADKKAAEDRSKQLEDELVSLQKKLKGTEDELDKY 60
Query: 247 SENLKDAQE*LELSYMKASDSKGDVAALNQRIQLPQDEKHRSQERLSTALPNLEEAEQAA 426
SE LKDAQE LEL+ KA+D++ DVA+LN+RIQL ++E R+QERL+TAL LEEAE+AA
Sbjct: 61 SEALKDAQEKLELAEKKATDAEADVASLNRRIQLVEEELDRAQERLATALQKLEEAEKAA 120
Query: 427 DATQRRTKVTKTRALYESEKMVIHDKQLAEDKSTADDAYDHFKEAAR 567
D ++R KV ++RA + EKM I + QL E K A+DA ++E AR
Sbjct: 121 DESERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAEDADRKYEEVAR 167
>ref|XP_864888.1| PREDICTED: similar to Tropomyosin 1 alpha chain (Alpha-tropomyosin)
isoform 5 [Canis familiaris].
Length = 281
Score = 197 bits (501), Expect = 5e-51
Identities = 106/167 (63%), Positives = 133/167 (79%)
Frame = +1
Query: 67 MEAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVGEELTHLHKKLKGTEDELDLY 246
M+AIKKKMQMLKLDKENA+DRAEQAE+DKKAAE++ KQ+ +EL L KKLKGTEDELD Y
Sbjct: 1 MDAIKKKMQMLKLDKENALDRAEQAEADKKAAEDRSKQLEDELVSLQKKLKGTEDELDKY 60
Query: 247 SENLKDAQE*LELSYMKASDSKGDVAALNQRIQLPQDEKHRSQERLSTALPNLEEAEQAA 426
SE LKDAQE LEL+ KA+D++ DVA+LN+RIQL ++E R+QERL+TAL LEEAE+AA
Sbjct: 61 SEALKDAQEKLELAEKKATDAEADVASLNRRIQLVEEELDRAQERLATALQKLEEAEKAA 120
Query: 427 DATQRRTKVTKTRALYESEKMVIHDKQLAEDKSTADDAYDHFKEAAR 567
D ++R KV ++RA + EKM I + QL E K A+DA ++E AR
Sbjct: 121 DESERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAEDADRKYEEVAR 167
Database: RefSeq44_CP.fasta
Posted date: Nov 15, 2010 4:36 PM
Number of letters in database: 18,921,627
Number of sequences in database: 33,359
Lambda K H
0.310 0.124 0.326
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33359
Number of Hits to DB: 16,144,710
Number of extensions: 384069
Number of successful extensions: 2738
Number of sequences better than 1.0e-05: 74
Number of HSP's gapped: 2443
Number of HSP's successfully gapped: 103
Length of query: 189
Length of database: 18,921,627
Length adjustment: 97
Effective length of query: 92
Effective length of database: 15,685,804
Effective search space: 1443093968
Effective search space used: 1443093968
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.3 bits)
S2: 32 (16.9 bits)
Search to RefSeqHP_Rel44
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20070806S-055075
(569 letters)
Database: RefSeq44_HP.fasta
33,950 sequences; 18,324,212 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001138632.1| tropomyosin alpha-4 chain isoform 1 [Homo sa... 218 3e-57
Alignment gi|NP_001018005.1| tropomyosin alpha-1 chain isoform 1 [Homo sa... 197 5e-51
Alignment gi|NP_001018006.1| tropomyosin alpha-1 chain isoform 4 [Homo sa... 197 5e-51
Alignment gi|NP_001018004.1| tropomyosin alpha-1 chain isoform 3 [Homo sa... 197 5e-51
Alignment gi|NP_000357.3| tropomyosin alpha-1 chain isoform 5 [Homo sapie... 197 5e-51
Alignment gi|NP_998839.1| tropomyosin beta chain isoform 2 [Homo sapiens]. 191 3e-49
Alignment gi|NP_003280.2| tropomyosin beta chain isoform 1 [Homo sapiens]. 191 3e-49
Alignment gi|NP_689476.2| tropomyosin alpha-3 chain isoform 1 [Homo sapie... 191 3e-49
Alignment gi|NP_001018020.1| tropomyosin alpha-1 chain isoform 7 [Homo sa... 160 7e-40
Alignment gi|NP_001018007.1| tropomyosin alpha-1 chain isoform 2 [Homo sa... 160 7e-40
>ref|NP_001138632.1| tropomyosin alpha-4 chain isoform 1 [Homo sapiens].
Length = 284
Score = 218 bits (555), Expect = 3e-57
Identities = 116/167 (69%), Positives = 138/167 (82%)
Frame = +1
Query: 67 MEAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVGEELTHLHKKLKGTEDELDLY 246
MEAIKKKMQMLKLDKENAIDRAEQAE+DKKAAE+KCKQV EELTHL KKLKGTEDELD Y
Sbjct: 1 MEAIKKKMQMLKLDKENAIDRAEQAEADKKAAEDKCKQVEEELTHLQKKLKGTEDELDKY 60
Query: 247 SENLKDAQE*LELSYMKASDSKGDVAALNQRIQLPQDEKHRSQERLSTALPNLEEAEQAA 426
SE+LKDAQE LEL+ KASD++GDVAALN+RIQL ++E R+QERL+TAL LEEAE+AA
Sbjct: 61 SEDLKDAQEKLELTEKKASDAEGDVAALNRRIQLVEEELDRAQERLATALQKLEEAEKAA 120
Query: 427 DATQRRTKVTKTRALYESEKMVIHDKQLAEDKSTADDAYDHFKEAAR 567
D ++R KV + RA+ + EKM I + QL E K A++A ++E AR
Sbjct: 121 DESERGMKVIENRAMKDEEKMEIQEMQLKEAKHIAEEADRKYEEVAR 167
>ref|NP_001018005.1| tropomyosin alpha-1 chain isoform 1 [Homo sapiens].
Length = 284
Score = 197 bits (501), Expect = 5e-51
Identities = 106/167 (63%), Positives = 133/167 (79%)
Frame = +1
Query: 67 MEAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVGEELTHLHKKLKGTEDELDLY 246
M+AIKKKMQMLKLDKENA+DRAEQAE+DKKAAE++ KQ+ +EL L KKLKGTEDELD Y
Sbjct: 1 MDAIKKKMQMLKLDKENALDRAEQAEADKKAAEDRSKQLEDELVSLQKKLKGTEDELDKY 60
Query: 247 SENLKDAQE*LELSYMKASDSKGDVAALNQRIQLPQDEKHRSQERLSTALPNLEEAEQAA 426
SE LKDAQE LEL+ KA+D++ DVA+LN+RIQL ++E R+QERL+TAL LEEAE+AA
Sbjct: 61 SEALKDAQEKLELAEKKATDAEADVASLNRRIQLVEEELDRAQERLATALQKLEEAEKAA 120
Query: 427 DATQRRTKVTKTRALYESEKMVIHDKQLAEDKSTADDAYDHFKEAAR 567
D ++R KV ++RA + EKM I + QL E K A+DA ++E AR
Sbjct: 121 DESERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAEDADRKYEEVAR 167
>ref|NP_001018006.1| tropomyosin alpha-1 chain isoform 4 [Homo sapiens].
Length = 284
Score = 197 bits (501), Expect = 5e-51
Identities = 106/167 (63%), Positives = 133/167 (79%)
Frame = +1
Query: 67 MEAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVGEELTHLHKKLKGTEDELDLY 246
M+AIKKKMQMLKLDKENA+DRAEQAE+DKKAAE++ KQ+ +EL L KKLKGTEDELD Y
Sbjct: 1 MDAIKKKMQMLKLDKENALDRAEQAEADKKAAEDRSKQLEDELVSLQKKLKGTEDELDKY 60
Query: 247 SENLKDAQE*LELSYMKASDSKGDVAALNQRIQLPQDEKHRSQERLSTALPNLEEAEQAA 426
SE LKDAQE LEL+ KA+D++ DVA+LN+RIQL ++E R+QERL+TAL LEEAE+AA
Sbjct: 61 SEALKDAQEKLELAEKKATDAEADVASLNRRIQLVEEELDRAQERLATALQKLEEAEKAA 120
Query: 427 DATQRRTKVTKTRALYESEKMVIHDKQLAEDKSTADDAYDHFKEAAR 567
D ++R KV ++RA + EKM I + QL E K A+DA ++E AR
Sbjct: 121 DESERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAEDADRKYEEVAR 167
>ref|NP_001018004.1| tropomyosin alpha-1 chain isoform 3 [Homo sapiens].
Length = 284
Score = 197 bits (501), Expect = 5e-51
Identities = 106/167 (63%), Positives = 133/167 (79%)
Frame = +1
Query: 67 MEAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVGEELTHLHKKLKGTEDELDLY 246
M+AIKKKMQMLKLDKENA+DRAEQAE+DKKAAE++ KQ+ +EL L KKLKGTEDELD Y
Sbjct: 1 MDAIKKKMQMLKLDKENALDRAEQAEADKKAAEDRSKQLEDELVSLQKKLKGTEDELDKY 60
Query: 247 SENLKDAQE*LELSYMKASDSKGDVAALNQRIQLPQDEKHRSQERLSTALPNLEEAEQAA 426
SE LKDAQE LEL+ KA+D++ DVA+LN+RIQL ++E R+QERL+TAL LEEAE+AA
Sbjct: 61 SEALKDAQEKLELAEKKATDAEADVASLNRRIQLVEEELDRAQERLATALQKLEEAEKAA 120
Query: 427 DATQRRTKVTKTRALYESEKMVIHDKQLAEDKSTADDAYDHFKEAAR 567
D ++R KV ++RA + EKM I + QL E K A+DA ++E AR
Sbjct: 121 DESERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAEDADRKYEEVAR 167
>ref|NP_000357.3| tropomyosin alpha-1 chain isoform 5 [Homo sapiens].
Length = 284
Score = 197 bits (501), Expect = 5e-51
Identities = 106/167 (63%), Positives = 133/167 (79%)
Frame = +1
Query: 67 MEAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVGEELTHLHKKLKGTEDELDLY 246
M+AIKKKMQMLKLDKENA+DRAEQAE+DKKAAE++ KQ+ +EL L KKLKGTEDELD Y
Sbjct: 1 MDAIKKKMQMLKLDKENALDRAEQAEADKKAAEDRSKQLEDELVSLQKKLKGTEDELDKY 60
Query: 247 SENLKDAQE*LELSYMKASDSKGDVAALNQRIQLPQDEKHRSQERLSTALPNLEEAEQAA 426
SE LKDAQE LEL+ KA+D++ DVA+LN+RIQL ++E R+QERL+TAL LEEAE+AA
Sbjct: 61 SEALKDAQEKLELAEKKATDAEADVASLNRRIQLVEEELDRAQERLATALQKLEEAEKAA 120
Query: 427 DATQRRTKVTKTRALYESEKMVIHDKQLAEDKSTADDAYDHFKEAAR 567
D ++R KV ++RA + EKM I + QL E K A+DA ++E AR
Sbjct: 121 DESERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAEDADRKYEEVAR 167
>ref|NP_998839.1| tropomyosin beta chain isoform 2 [Homo sapiens].
Length = 284
Score = 191 bits (486), Expect = 3e-49
Identities = 100/167 (59%), Positives = 132/167 (79%)
Frame = +1
Query: 67 MEAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVGEELTHLHKKLKGTEDELDLY 246
M+AIKKKMQMLKLDKENAIDRAEQAE+DKK AE++CKQ+ EE L KKLKGTEDE++ Y
Sbjct: 1 MDAIKKKMQMLKLDKENAIDRAEQAEADKKQAEDRCKQLEEEQQALQKKLKGTEDEVEKY 60
Query: 247 SENLKDAQE*LELSYMKASDSKGDVAALNQRIQLPQDEKHRSQERLSTALPNLEEAEQAA 426
SE++K+AQE LE + KA+D++ DVA+LN+RIQL ++E R+QERL+TAL LEEAE+AA
Sbjct: 61 SESVKEAQEKLEQAEKKATDAEADVASLNRRIQLVEEELDRAQERLATALQKLEEAEKAA 120
Query: 427 DATQRRTKVTKTRALYESEKMVIHDKQLAEDKSTADDAYDHFKEAAR 567
D ++R KV + RA+ + EKM + + QL E K A+D+ ++E AR
Sbjct: 121 DESERGMKVIENRAMKDEEKMELQEMQLKEAKHIAEDSDRKYEEVAR 167
>ref|NP_003280.2| tropomyosin beta chain isoform 1 [Homo sapiens].
Length = 284
Score = 191 bits (486), Expect = 3e-49
Identities = 100/167 (59%), Positives = 132/167 (79%)
Frame = +1
Query: 67 MEAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVGEELTHLHKKLKGTEDELDLY 246
M+AIKKKMQMLKLDKENAIDRAEQAE+DKK AE++CKQ+ EE L KKLKGTEDE++ Y
Sbjct: 1 MDAIKKKMQMLKLDKENAIDRAEQAEADKKQAEDRCKQLEEEQQALQKKLKGTEDEVEKY 60
Query: 247 SENLKDAQE*LELSYMKASDSKGDVAALNQRIQLPQDEKHRSQERLSTALPNLEEAEQAA 426
SE++K+AQE LE + KA+D++ DVA+LN+RIQL ++E R+QERL+TAL LEEAE+AA
Sbjct: 61 SESVKEAQEKLEQAEKKATDAEADVASLNRRIQLVEEELDRAQERLATALQKLEEAEKAA 120
Query: 427 DATQRRTKVTKTRALYESEKMVIHDKQLAEDKSTADDAYDHFKEAAR 567
D ++R KV + RA+ + EKM + + QL E K A+D+ ++E AR
Sbjct: 121 DESERGMKVIENRAMKDEEKMELQEMQLKEAKHIAEDSDRKYEEVAR 167
>ref|NP_689476.2| tropomyosin alpha-3 chain isoform 1 [Homo sapiens].
Length = 285
Score = 191 bits (486), Expect = 3e-49
Identities = 102/167 (61%), Positives = 132/167 (79%)
Frame = +1
Query: 67 MEAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVGEELTHLHKKLKGTEDELDLY 246
MEAIKKKMQMLKLDKENA+DRAEQAE+++K AEE+ KQ+ +EL + KKLKGTEDELD Y
Sbjct: 2 MEAIKKKMQMLKLDKENALDRAEQAEAEQKQAEERSKQLEDELAAMQKKLKGTEDELDKY 61
Query: 247 SENLKDAQE*LELSYMKASDSKGDVAALNQRIQLPQDEKHRSQERLSTALPNLEEAEQAA 426
SE LKDAQE LEL+ KA+D++ +VA+LN+RIQL ++E R+QERL+TAL LEEAE+AA
Sbjct: 62 SEALKDAQEKLELAEKKAADAEAEVASLNRRIQLVEEELDRAQERLATALQKLEEAEKAA 121
Query: 427 DATQRRTKVTKTRALYESEKMVIHDKQLAEDKSTADDAYDHFKEAAR 567
D ++R KV + RAL + EKM + + QL E K A++A ++E AR
Sbjct: 122 DESERGMKVIENRALKDEEKMELQEIQLKEAKHIAEEADRKYEEVAR 168
>ref|NP_001018020.1| tropomyosin alpha-1 chain isoform 7 [Homo sapiens].
Length = 284
Score = 160 bits (405), Expect = 7e-40
Identities = 89/167 (53%), Positives = 121/167 (72%)
Frame = +1
Query: 67 MEAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVGEELTHLHKKLKGTEDELDLY 246
M+AIKKKMQMLKLDKENA+DRAEQAE+DKKAAE++ KQ+ E++ K L+ +EDE D
Sbjct: 1 MDAIKKKMQMLKLDKENALDRAEQAEADKKAAEDRSKQLEEDIAAKEKLLRVSEDERDRV 60
Query: 247 SENLKDAQE*LELSYMKASDSKGDVAALNQRIQLPQDEKHRSQERLSTALPNLEEAEQAA 426
E L A++ L + A+ ++ DVA+LN+RIQL ++E R+QERL+TAL LEEAE+AA
Sbjct: 61 LEELHKAEDSLLAAEEAAAKAEADVASLNRRIQLVEEELDRAQERLATALQKLEEAEKAA 120
Query: 427 DATQRRTKVTKTRALYESEKMVIHDKQLAEDKSTADDAYDHFKEAAR 567
D ++R KV ++RA + EKM I + QL E K A+DA ++E AR
Sbjct: 121 DESERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAEDADRKYEEVAR 167
>ref|NP_001018007.1| tropomyosin alpha-1 chain isoform 2 [Homo sapiens].
Length = 284
Score = 160 bits (405), Expect = 7e-40
Identities = 89/167 (53%), Positives = 121/167 (72%)
Frame = +1
Query: 67 MEAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVGEELTHLHKKLKGTEDELDLY 246
M+AIKKKMQMLKLDKENA+DRAEQAE+DKKAAE++ KQ+ E++ K L+ +EDE D
Sbjct: 1 MDAIKKKMQMLKLDKENALDRAEQAEADKKAAEDRSKQLEEDIAAKEKLLRVSEDERDRV 60
Query: 247 SENLKDAQE*LELSYMKASDSKGDVAALNQRIQLPQDEKHRSQERLSTALPNLEEAEQAA 426
E L A++ L + A+ ++ DVA+LN+RIQL ++E R+QERL+TAL LEEAE+AA
Sbjct: 61 LEELHKAEDSLLAAEEAAAKAEADVASLNRRIQLVEEELDRAQERLATALQKLEEAEKAA 120
Query: 427 DATQRRTKVTKTRALYESEKMVIHDKQLAEDKSTADDAYDHFKEAAR 567
D ++R KV ++RA + EKM I + QL E K A+DA ++E AR
Sbjct: 121 DESERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAEDADRKYEEVAR 167
Database: RefSeq44_HP.fasta
Posted date: Nov 15, 2010 4:36 PM
Number of letters in database: 18,324,212
Number of sequences in database: 33,950
Lambda K H
0.310 0.124 0.326
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33950
Number of Hits to DB: 15,862,264
Number of extensions: 376016
Number of successful extensions: 2178
Number of sequences better than 1.0e-05: 16
Number of HSP's gapped: 2071
Number of HSP's successfully gapped: 22
Length of query: 189
Length of database: 18,324,212
Length adjustment: 97
Effective length of query: 92
Effective length of database: 15,031,062
Effective search space: 1382857704
Effective search space used: 1382857704
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.3 bits)
S2: 32 (16.9 bits)
Search to RefSeqMP_Rel44
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20070806S-055075
(569 letters)
Database: RefSeq44_MP.fasta
29,866 sequences; 15,452,059 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001157727.1| tropomyosin alpha-1 chain isoform 9 [Mus mus... 197 4e-51
Alignment gi|NP_001157723.1| tropomyosin alpha-1 chain isoform 5 [Mus mus... 197 4e-51
Alignment gi|NP_001157722.1| tropomyosin alpha-1 chain isoform 4 [Mus mus... 197 4e-51
Alignment gi|NP_001157720.1| tropomyosin alpha-1 chain isoform 1 [Mus mus... 197 4e-51
Alignment gi|NP_077745.2| tropomyosin alpha-1 chain isoform 3 [Mus muscul... 197 4e-51
Alignment gi|NP_033442.2| tropomyosin beta chain [Mus musculus]. 193 8e-50
Alignment gi|NP_071709.2| tropomyosin alpha-3 chain [Mus musculus]. 190 7e-49
Alignment gi|NP_001157721.1| tropomyosin alpha-1 chain isoform 2 [Mus mus... 161 3e-40
Alignment gi|NP_001157728.1| tropomyosin alpha-1 chain isoform 10 [Mus mu... 91 6e-19
Alignment gi|NP_001157726.1| tropomyosin alpha-1 chain isoform 8 [Mus mus... 91 6e-19
>ref|NP_001157727.1| tropomyosin alpha-1 chain isoform 9 [Mus musculus].
Length = 281
Score = 197 bits (501), Expect = 4e-51
Identities = 106/167 (63%), Positives = 133/167 (79%)
Frame = +1
Query: 67 MEAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVGEELTHLHKKLKGTEDELDLY 246
M+AIKKKMQMLKLDKENA+DRAEQAE+DKKAAE++ KQ+ +EL L KKLKGTEDELD Y
Sbjct: 1 MDAIKKKMQMLKLDKENALDRAEQAEADKKAAEDRSKQLEDELVSLQKKLKGTEDELDKY 60
Query: 247 SENLKDAQE*LELSYMKASDSKGDVAALNQRIQLPQDEKHRSQERLSTALPNLEEAEQAA 426
SE LKDAQE LEL+ KA+D++ DVA+LN+RIQL ++E R+QERL+TAL LEEAE+AA
Sbjct: 61 SEALKDAQEKLELAEKKATDAEADVASLNRRIQLVEEELDRAQERLATALQKLEEAEKAA 120
Query: 427 DATQRRTKVTKTRALYESEKMVIHDKQLAEDKSTADDAYDHFKEAAR 567
D ++R KV ++RA + EKM I + QL E K A+DA ++E AR
Sbjct: 121 DESERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAEDADRKYEEVAR 167
>ref|NP_001157723.1| tropomyosin alpha-1 chain isoform 5 [Mus musculus].
Length = 284
Score = 197 bits (501), Expect = 4e-51
Identities = 106/167 (63%), Positives = 133/167 (79%)
Frame = +1
Query: 67 MEAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVGEELTHLHKKLKGTEDELDLY 246
M+AIKKKMQMLKLDKENA+DRAEQAE+DKKAAE++ KQ+ +EL L KKLKGTEDELD Y
Sbjct: 1 MDAIKKKMQMLKLDKENALDRAEQAEADKKAAEDRSKQLEDELVSLQKKLKGTEDELDKY 60
Query: 247 SENLKDAQE*LELSYMKASDSKGDVAALNQRIQLPQDEKHRSQERLSTALPNLEEAEQAA 426
SE LKDAQE LEL+ KA+D++ DVA+LN+RIQL ++E R+QERL+TAL LEEAE+AA
Sbjct: 61 SEALKDAQEKLELAEKKATDAEADVASLNRRIQLVEEELDRAQERLATALQKLEEAEKAA 120
Query: 427 DATQRRTKVTKTRALYESEKMVIHDKQLAEDKSTADDAYDHFKEAAR 567
D ++R KV ++RA + EKM I + QL E K A+DA ++E AR
Sbjct: 121 DESERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAEDADRKYEEVAR 167
>ref|NP_001157722.1| tropomyosin alpha-1 chain isoform 4 [Mus musculus].
Length = 284
Score = 197 bits (501), Expect = 4e-51
Identities = 106/167 (63%), Positives = 133/167 (79%)
Frame = +1
Query: 67 MEAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVGEELTHLHKKLKGTEDELDLY 246
M+AIKKKMQMLKLDKENA+DRAEQAE+DKKAAE++ KQ+ +EL L KKLKGTEDELD Y
Sbjct: 1 MDAIKKKMQMLKLDKENALDRAEQAEADKKAAEDRSKQLEDELVSLQKKLKGTEDELDKY 60
Query: 247 SENLKDAQE*LELSYMKASDSKGDVAALNQRIQLPQDEKHRSQERLSTALPNLEEAEQAA 426
SE LKDAQE LEL+ KA+D++ DVA+LN+RIQL ++E R+QERL+TAL LEEAE+AA
Sbjct: 61 SEALKDAQEKLELAEKKATDAEADVASLNRRIQLVEEELDRAQERLATALQKLEEAEKAA 120
Query: 427 DATQRRTKVTKTRALYESEKMVIHDKQLAEDKSTADDAYDHFKEAAR 567
D ++R KV ++RA + EKM I + QL E K A+DA ++E AR
Sbjct: 121 DESERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAEDADRKYEEVAR 167
>ref|NP_001157720.1| tropomyosin alpha-1 chain isoform 1 [Mus musculus].
Length = 284
Score = 197 bits (501), Expect = 4e-51
Identities = 106/167 (63%), Positives = 133/167 (79%)
Frame = +1
Query: 67 MEAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVGEELTHLHKKLKGTEDELDLY 246
M+AIKKKMQMLKLDKENA+DRAEQAE+DKKAAE++ KQ+ +EL L KKLKGTEDELD Y
Sbjct: 1 MDAIKKKMQMLKLDKENALDRAEQAEADKKAAEDRSKQLEDELVSLQKKLKGTEDELDKY 60
Query: 247 SENLKDAQE*LELSYMKASDSKGDVAALNQRIQLPQDEKHRSQERLSTALPNLEEAEQAA 426
SE LKDAQE LEL+ KA+D++ DVA+LN+RIQL ++E R+QERL+TAL LEEAE+AA
Sbjct: 61 SEALKDAQEKLELAEKKATDAEADVASLNRRIQLVEEELDRAQERLATALQKLEEAEKAA 120
Query: 427 DATQRRTKVTKTRALYESEKMVIHDKQLAEDKSTADDAYDHFKEAAR 567
D ++R KV ++RA + EKM I + QL E K A+DA ++E AR
Sbjct: 121 DESERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAEDADRKYEEVAR 167
>ref|NP_077745.2| tropomyosin alpha-1 chain isoform 3 [Mus musculus].
Length = 284
Score = 197 bits (501), Expect = 4e-51
Identities = 106/167 (63%), Positives = 133/167 (79%)
Frame = +1
Query: 67 MEAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVGEELTHLHKKLKGTEDELDLY 246
M+AIKKKMQMLKLDKENA+DRAEQAE+DKKAAE++ KQ+ +EL L KKLKGTEDELD Y
Sbjct: 1 MDAIKKKMQMLKLDKENALDRAEQAEADKKAAEDRSKQLEDELVSLQKKLKGTEDELDKY 60
Query: 247 SENLKDAQE*LELSYMKASDSKGDVAALNQRIQLPQDEKHRSQERLSTALPNLEEAEQAA 426
SE LKDAQE LEL+ KA+D++ DVA+LN+RIQL ++E R+QERL+TAL LEEAE+AA
Sbjct: 61 SEALKDAQEKLELAEKKATDAEADVASLNRRIQLVEEELDRAQERLATALQKLEEAEKAA 120
Query: 427 DATQRRTKVTKTRALYESEKMVIHDKQLAEDKSTADDAYDHFKEAAR 567
D ++R KV ++RA + EKM I + QL E K A+DA ++E AR
Sbjct: 121 DESERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAEDADRKYEEVAR 167
>ref|NP_033442.2| tropomyosin beta chain [Mus musculus].
Length = 284
Score = 193 bits (490), Expect = 8e-50
Identities = 101/167 (60%), Positives = 132/167 (79%)
Frame = +1
Query: 67 MEAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVGEELTHLHKKLKGTEDELDLY 246
M+AIKKKMQMLKLDKENAIDRAEQAE+DKK AE++CKQ+ EE L KKLKGTEDE++ Y
Sbjct: 1 MDAIKKKMQMLKLDKENAIDRAEQAEADKKQAEDRCKQLEEEQQALQKKLKGTEDEVEKY 60
Query: 247 SENLKDAQE*LELSYMKASDSKGDVAALNQRIQLPQDEKHRSQERLSTALPNLEEAEQAA 426
SE++KDAQE LE + KA+D++ DVA+LN+RIQL ++E R+QERL+TAL LEEAE+AA
Sbjct: 61 SESVKDAQEKLEQAEKKATDAEADVASLNRRIQLVEEELDRAQERLATALQKLEEAEKAA 120
Query: 427 DATQRRTKVTKTRALYESEKMVIHDKQLAEDKSTADDAYDHFKEAAR 567
D ++R KV + RA+ + EKM + + QL E K A+D+ ++E AR
Sbjct: 121 DESERGMKVIENRAMKDEEKMELQEMQLKEAKHIAEDSDRKYEEVAR 167
>ref|NP_071709.2| tropomyosin alpha-3 chain [Mus musculus].
Length = 284
Score = 190 bits (482), Expect = 7e-49
Identities = 101/167 (60%), Positives = 131/167 (78%)
Frame = +1
Query: 67 MEAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVGEELTHLHKKLKGTEDELDLY 246
MEAIKKKMQMLKLDKEN +DRAEQAE+++K AEE+ KQ+ +EL + KKLKGTEDELD Y
Sbjct: 1 MEAIKKKMQMLKLDKENVLDRAEQAEAEQKQAEERSKQLEDELATMQKKLKGTEDELDKY 60
Query: 247 SENLKDAQE*LELSYMKASDSKGDVAALNQRIQLPQDEKHRSQERLSTALPNLEEAEQAA 426
SE LKDAQE LEL+ KA+D++ +VA+LN+RIQL ++E R+QERL+TAL LEEAE+AA
Sbjct: 61 SEALKDAQEKLELAEKKAADAEAEVASLNRRIQLVEEELDRAQERLATALQKLEEAEKAA 120
Query: 427 DATQRRTKVTKTRALYESEKMVIHDKQLAEDKSTADDAYDHFKEAAR 567
D ++R KV + RAL + EKM + + QL E K A++A ++E AR
Sbjct: 121 DESERGMKVIENRALKDEEKMELQEIQLKEAKHIAEEADRKYEEVAR 167
>ref|NP_001157721.1| tropomyosin alpha-1 chain isoform 2 [Mus musculus].
Length = 284
Score = 161 bits (407), Expect = 3e-40
Identities = 89/167 (53%), Positives = 121/167 (72%)
Frame = +1
Query: 67 MEAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVGEELTHLHKKLKGTEDELDLY 246
M+AIKKKMQMLKLDKENA+DRAEQAE+DKKAAE++ KQ+ E++ K L+ +EDE D
Sbjct: 1 MDAIKKKMQMLKLDKENALDRAEQAEADKKAAEDRSKQLEEDIAAKEKLLRASEDERDRV 60
Query: 247 SENLKDAQE*LELSYMKASDSKGDVAALNQRIQLPQDEKHRSQERLSTALPNLEEAEQAA 426
E L A++ L + A+ ++ DVA+LN+RIQL ++E R+QERL+TAL LEEAE+AA
Sbjct: 61 LEELHKAEDSLLAADETAAKAEADVASLNRRIQLVEEELDRAQERLATALQKLEEAEKAA 120
Query: 427 DATQRRTKVTKTRALYESEKMVIHDKQLAEDKSTADDAYDHFKEAAR 567
D ++R KV ++RA + EKM I + QL E K A+DA ++E AR
Sbjct: 121 DESERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAEDADRKYEEVAR 167
>ref|NP_001157728.1| tropomyosin alpha-1 chain isoform 10 [Mus musculus].
Length = 245
Score = 90.9 bits (224), Expect = 6e-19
Identities = 51/125 (40%), Positives = 77/125 (61%)
Frame = +1
Query: 193 LTHLHKKLKGTEDELDLYSENLKDAQE*LELSYMKASDSKGDVAALNQRIQLPQDEKHRS 372
L + +K++ +++ D E Q L+ ++ DVA+LN+RIQL ++E R+
Sbjct: 7 LEAVRRKIRSLQEQADAAEERAGSLQRELDQERKLRETAEADVASLNRRIQLVEEELDRA 66
Query: 373 QERLSTALPNLEEAEQAADATQRRTKVTKTRALYESEKMVIHDKQLAEDKSTADDAYDHF 552
QERL+TAL LEEAE+AAD ++R KV ++RA + EKM I + QL E K A+DA +
Sbjct: 67 QERLATALQKLEEAEKAADESERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAEDADRKY 126
Query: 553 KEAAR 567
+E AR
Sbjct: 127 EEVAR 131
>ref|NP_001157726.1| tropomyosin alpha-1 chain isoform 8 [Mus musculus].
Length = 248
Score = 90.9 bits (224), Expect = 6e-19
Identities = 51/125 (40%), Positives = 77/125 (61%)
Frame = +1
Query: 193 LTHLHKKLKGTEDELDLYSENLKDAQE*LELSYMKASDSKGDVAALNQRIQLPQDEKHRS 372
L + +K++ +++ D E Q L+ ++ DVA+LN+RIQL ++E R+
Sbjct: 7 LEAVRRKIRSLQEQADAAEERAGSLQRELDQERKLRETAEADVASLNRRIQLVEEELDRA 66
Query: 373 QERLSTALPNLEEAEQAADATQRRTKVTKTRALYESEKMVIHDKQLAEDKSTADDAYDHF 552
QERL+TAL LEEAE+AAD ++R KV ++RA + EKM I + QL E K A+DA +
Sbjct: 67 QERLATALQKLEEAEKAADESERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAEDADRKY 126
Query: 553 KEAAR 567
+E AR
Sbjct: 127 EEVAR 131
Database: RefSeq44_MP.fasta
Posted date: Nov 15, 2010 4:36 PM
Number of letters in database: 15,452,059
Number of sequences in database: 29,866
Lambda K H
0.310 0.124 0.326
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 29866
Number of Hits to DB: 13,244,401
Number of extensions: 308943
Number of successful extensions: 1777
Number of sequences better than 1.0e-05: 13
Number of HSP's gapped: 1715
Number of HSP's successfully gapped: 14
Length of query: 189
Length of database: 15,452,059
Length adjustment: 95
Effective length of query: 94
Effective length of database: 12,614,789
Effective search space: 1185790166
Effective search space used: 1185790166
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.3 bits)
S2: 32 (16.9 bits)
Search to RefSeqSP_Rel44
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20070806S-055075
(569 letters)
Database: RefSeq44_SP.fasta
20,576 sequences; 9,542,844 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001090952.1| tropomyosin alpha-1 chain [Sus scrofa]. 191 3e-49
Alignment gi|NP_001123419.1| tropomyosin beta chain [Sus scrofa]. 187 2e-48
Alignment gi|NP_999500.1| tropomyosin alpha-4 chain [Sus scrofa]. 92 1e-19
Alignment gi|NP_001001632.1| tropomyosin alpha-3 chain [Sus scrofa]. 85 2e-17
>ref|NP_001090952.1| tropomyosin alpha-1 chain [Sus scrofa].
Length = 284
Score = 191 bits (484), Expect = 3e-49
Identities = 103/167 (61%), Positives = 131/167 (78%)
Frame = +1
Query: 67 MEAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVGEELTHLHKKLKGTEDELDLY 246
M+AIKKKMQMLKLDKENA+DRAEQAE+DKKAAE++ K++ +EL L KKLK TEDELD Y
Sbjct: 1 MDAIKKKMQMLKLDKENALDRAEQAEADKKAAEDRSKRLEDELVSLQKKLKATEDELDKY 60
Query: 247 SENLKDAQE*LELSYMKASDSKGDVAALNQRIQLPQDEKHRSQERLSTALPNLEEAEQAA 426
SE KDAQE LEL+ KA+D++ DVA+LN+RIQL ++E R+QERL+TAL LEEAE+AA
Sbjct: 61 SEAPKDAQEKLELAEKKATDAEADVASLNRRIQLVEEELDRAQERLATALQKLEEAEKAA 120
Query: 427 DATQRRTKVTKTRALYESEKMVIHDKQLAEDKSTADDAYDHFKEAAR 567
D ++R KV ++RA + EKM I + QL E K A+DA ++E AR
Sbjct: 121 DESERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAEDADRKYEEVAR 167
>ref|NP_001123419.1| tropomyosin beta chain [Sus scrofa].
Length = 287
Score = 187 bits (476), Expect = 2e-48
Identities = 101/170 (59%), Positives = 132/170 (77%), Gaps = 3/170 (1%)
Frame = +1
Query: 67 MEAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVGEELTHLHKKLKGTEDELDLY 246
M+AIKKKMQMLKLDKENAIDRAEQAE+DKK AE++CKQ+ EE L KKLKGTEDE++ Y
Sbjct: 1 MDAIKKKMQMLKLDKENAIDRAEQAEADKKQAEDRCKQLEEEQQALQKKLKGTEDEVEKY 60
Query: 247 SENLKDAQE*LELSYMKASDSKGDVAALNQRIQLPQDEKHRSQERLSTALPNLEEAEQAA 426
SE++KDAQE LE + KA+D++ DVA+LN+RIQL ++E R+QERL+TAL LEEAE+AA
Sbjct: 61 SESVKDAQEKLEQAEKKATDAEADVASLNRRIQLVEEELDRAQERLATALQKLEEAEKAA 120
Query: 427 DATQRRTKVTKTRALYESEKMVI---HDKQLAEDKSTADDAYDHFKEAAR 567
D ++R KV + RA+ + EKM + + QL E K A+D+ ++E AR
Sbjct: 121 DESERGLKVIENRAMKDEEKMELQEMQEMQLKEAKHIAEDSDRKYEEVAR 170
>ref|NP_999500.1| tropomyosin alpha-4 chain [Sus scrofa].
Length = 248
Score = 92.4 bits (228), Expect = 1e-19
Identities = 51/125 (40%), Positives = 79/125 (63%)
Frame = +1
Query: 193 LTHLHKKLKGTEDELDLYSENLKDAQE*LELSYMKASDSKGDVAALNQRIQLPQDEKHRS 372
L + +K++ + + D + + Q L+ + ++GDVAALN+RIQL ++E R+
Sbjct: 7 LEAVKRKIQALQQQADEAEDRAQGLQRELDGERERREKAEGDVAALNRRIQLVEEELDRA 66
Query: 373 QERLSTALPNLEEAEQAADATQRRTKVTKTRALYESEKMVIHDKQLAEDKSTADDAYDHF 552
QERL+TAL LEEAE+AAD ++R KV + RA+ + EKM I + QL E K A++A +
Sbjct: 67 QERLATALQKLEEAEKAADESERGMKVIENRAMKDEEKMEIQEMQLKEAKHIAEEADRKY 126
Query: 553 KEAAR 567
+E AR
Sbjct: 127 EEVAR 131
Score = 51.6 bits (122), Expect = 2e-07
Identities = 30/127 (23%), Positives = 66/127 (51%)
Frame = +1
Query: 64 AMEAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVGEELTHLHKKLKGTEDELDL 243
++EA+K+K+Q L+ + A DRA+ + + E+ ++ ++ L+++++ E+ELD
Sbjct: 6 SLEAVKRKIQALQQQADEAEDRAQGLQRELDGERERREKAEGDVAALNRRIQLVEEELDR 65
Query: 244 YSENLKDAQE*LELSYMKASDSKGDVAALNQRIQLPQDEKHRSQERLSTALPNLEEAEQA 423
E L A + LE + A +S+ + + R +++ + +L A EEA++
Sbjct: 66 AQERLATALQKLEEAEKAADESERGMKVIENRAMKDEEKMEIQEMQLKEAKHIAEEADRK 125
Query: 424 ADATQRR 444
+ R+
Sbjct: 126 YEEVARK 132
>ref|NP_001001632.1| tropomyosin alpha-3 chain [Sus scrofa].
Length = 248
Score = 85.1 bits (209), Expect = 2e-17
Identities = 48/120 (40%), Positives = 75/120 (62%)
Frame = +1
Query: 208 KKLKGTEDELDLYSENLKDAQE*LELSYMKASDSKGDVAALNQRIQLPQDEKHRSQERLS 387
+K++ + + D E + Q +E ++ +VA+LN+RIQL ++E R+QERL+
Sbjct: 12 RKIQVLQQQADDAEERAERLQREVEGERRAREQAEAEVASLNRRIQLVEEELDRAQERLA 71
Query: 388 TALPNLEEAEQAADATQRRTKVTKTRALYESEKMVIHDKQLAEDKSTADDAYDHFKEAAR 567
TAL LEEAE+AAD ++R KV + RAL + EKM + + QL E K A++A ++E AR
Sbjct: 72 TALQKLEEAEKAADESERGMKVIENRALKDEEKMELQEIQLKEAKHIAEEADRKYEEVAR 131
Score = 55.8 bits (133), Expect = 1e-08
Identities = 47/181 (25%), Positives = 91/181 (50%), Gaps = 21/181 (11%)
Frame = +1
Query: 67 MEAIKKKMQMLKLDKENAIDRAEQAESDKKAAEEKCKQVGEELTHLHKKLKGTEDELDLY 246
+EA+K+K+Q+L+ ++A +RAE+ + + + +Q E+ L+++++ E+ELD
Sbjct: 7 IEAVKRKIQVLQQQADDAEERAERLQREVEGERRAREQAEAEVASLNRRIQLVEEELDRA 66
Query: 247 SENLKDAQE*LELSYMKASDSKGDVAALNQRIQLPQDEKHRSQE-RLSTALPNLEEAEQA 423
E L A + LE + A +S+ + + R L +EK QE +L A EEA++
Sbjct: 67 QERLATALQKLEEAEKAADESERGMKVIENR-ALKDEEKMELQEIQLKEAKHIAEEADRK 125
Query: 424 --------------ADATQRRTKVTKTRALYESEKMVIHDKQL-----AEDK-STADDAY 543
+ T+ R ++ ++R E++ + D+ L AE+K S +D Y
Sbjct: 126 YEEVARKLVIIEGDLERTEERAELAESRCREMDEQIRLMDQNLKCLSAAEEKYSQKEDKY 185
Query: 544 D 546
+
Sbjct: 186 E 186
Database: RefSeq44_SP.fasta
Posted date: Nov 15, 2010 4:36 PM
Number of letters in database: 9,542,844
Number of sequences in database: 20,576
Lambda K H
0.310 0.124 0.326
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 20576
Number of Hits to DB: 8,331,049
Number of extensions: 198631
Number of successful extensions: 983
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 955
Number of HSP's successfully gapped: 6
Length of query: 189
Length of database: 9,542,844
Length adjustment: 92
Effective length of query: 97
Effective length of database: 7,649,852
Effective search space: 742035644
Effective search space used: 742035644
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.3 bits)
S2: 32 (16.9 bits)