Search to RefSeqBP_Rel44
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20070806S-056142
(365 letters)
Database: RefSeq44_BP.fasta
33,615 sequences; 18,071,151 total letters
Searching..................................................done
***** No hits found ******
Database: RefSeq44_BP.fasta
Posted date: Nov 15, 2010 4:36 PM
Number of letters in database: 18,071,151
Number of sequences in database: 33,615
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33615
Number of Hits to DB: 11,691,062
Number of extensions: 301896
Number of successful extensions: 1824
Number of sequences better than 1.0e-05: 0
Number of HSP's gapped: 1795
Number of HSP's successfully gapped: 0
Length of query: 121
Length of database: 18,071,151
Length adjustment: 89
Effective length of query: 32
Effective length of database: 15,079,416
Effective search space: 482541312
Effective search space used: 482541312
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 30 (16.2 bits)
Search to RefSeqCP_Rel44
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20070806S-056142
(365 letters)
Database: RefSeq44_CP.fasta
33,359 sequences; 18,921,627 total letters
Searching..................................................done
***** No hits found ******
Database: RefSeq44_CP.fasta
Posted date: Nov 15, 2010 4:36 PM
Number of letters in database: 18,921,627
Number of sequences in database: 33,359
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33359
Number of Hits to DB: 12,000,197
Number of extensions: 306483
Number of successful extensions: 2006
Number of sequences better than 1.0e-05: 0
Number of HSP's gapped: 1955
Number of HSP's successfully gapped: 0
Length of query: 121
Length of database: 18,921,627
Length adjustment: 89
Effective length of query: 32
Effective length of database: 15,952,676
Effective search space: 510485632
Effective search space used: 510485632
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 31 (16.5 bits)
Search to RefSeqHP_Rel44
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20070806S-056142
(365 letters)
Database: RefSeq44_HP.fasta
33,950 sequences; 18,324,212 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_003281.1| tropomyosin alpha-4 chain isoform 2 [Homo sapie... 57 4e-09
>ref|NP_003281.1| tropomyosin alpha-4 chain isoform 2 [Homo sapiens].
Length = 248
Score = 57.0 bits (136), Expect = 4e-09
Identities = 34/62 (54%), Positives = 37/62 (59%)
Frame = +2
Query: 125 MAGLNSLEAVRRKIXXXXXXXXXXXXXXHGLQWELDGDRERWEKAEGDVPTFIGCILLVV 304
MAGLNSLEAV+RKI GLQ ELDG+RER EKAEGDV I LV
Sbjct: 1 MAGLNSLEAVKRKIQALQQQADEAEDRAQGLQRELDGERERREKAEGDVAALNRRIQLVE 60
Query: 305 ED 310
E+
Sbjct: 61 EE 62
Database: RefSeq44_HP.fasta
Posted date: Nov 15, 2010 4:36 PM
Number of letters in database: 18,324,212
Number of sequences in database: 33,950
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33950
Number of Hits to DB: 11,741,580
Number of extensions: 296371
Number of successful extensions: 1794
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 1767
Number of HSP's successfully gapped: 1
Length of query: 121
Length of database: 18,324,212
Length adjustment: 89
Effective length of query: 32
Effective length of database: 15,302,662
Effective search space: 489685184
Effective search space used: 489685184
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 30 (16.2 bits)
Search to RefSeqMP_Rel44
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20070806S-056142
(365 letters)
Database: RefSeq44_MP.fasta
29,866 sequences; 15,452,059 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001001491.1| tropomyosin alpha-4 chain [Mus musculus]. 54 2e-08
>ref|NP_001001491.1| tropomyosin alpha-4 chain [Mus musculus].
Length = 248
Score = 54.3 bits (129), Expect = 2e-08
Identities = 32/62 (51%), Positives = 36/62 (58%)
Frame = +2
Query: 125 MAGLNSLEAVRRKIXXXXXXXXXXXXXXHGLQWELDGDRERWEKAEGDVPTFIGCILLVV 304
MAGLNSLEAV+RKI GLQ ELDG+RER EKAEGD I L+
Sbjct: 1 MAGLNSLEAVKRKIQALQQQADDAEDRAQGLQRELDGERERREKAEGDAAALNRRIQLLE 60
Query: 305 ED 310
E+
Sbjct: 61 EE 62
Database: RefSeq44_MP.fasta
Posted date: Nov 15, 2010 4:36 PM
Number of letters in database: 15,452,059
Number of sequences in database: 29,866
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 29866
Number of Hits to DB: 9,652,510
Number of extensions: 238158
Number of successful extensions: 1385
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 1350
Number of HSP's successfully gapped: 1
Length of query: 121
Length of database: 15,452,059
Length adjustment: 88
Effective length of query: 33
Effective length of database: 12,823,851
Effective search space: 423187083
Effective search space used: 423187083
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 30 (16.2 bits)
Search to RefSeqSP_Rel44
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20070806S-056142
(365 letters)
Database: RefSeq44_SP.fasta
20,576 sequences; 9,542,844 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_999500.1| tropomyosin alpha-4 chain [Sus scrofa]. 57 2e-09
>ref|NP_999500.1| tropomyosin alpha-4 chain [Sus scrofa].
Length = 248
Score = 57.0 bits (136), Expect = 2e-09
Identities = 34/62 (54%), Positives = 37/62 (59%)
Frame = +2
Query: 125 MAGLNSLEAVRRKIXXXXXXXXXXXXXXHGLQWELDGDRERWEKAEGDVPTFIGCILLVV 304
MAGLNSLEAV+RKI GLQ ELDG+RER EKAEGDV I LV
Sbjct: 1 MAGLNSLEAVKRKIQALQQQADEAEDRAQGLQRELDGERERREKAEGDVAALNRRIQLVE 60
Query: 305 ED 310
E+
Sbjct: 61 EE 62
Database: RefSeq44_SP.fasta
Posted date: Nov 15, 2010 4:36 PM
Number of letters in database: 9,542,844
Number of sequences in database: 20,576
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 20576
Number of Hits to DB: 6,253,801
Number of extensions: 164118
Number of successful extensions: 1082
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 1063
Number of HSP's successfully gapped: 1
Length of query: 121
Length of database: 9,542,844
Length adjustment: 85
Effective length of query: 36
Effective length of database: 7,793,884
Effective search space: 280579824
Effective search space used: 280579824
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 30 (16.2 bits)