Search to RefSeqBP_Rel44
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20070806S-063353
(997 letters)
Database: RefSeq44_BP.fasta
33,615 sequences; 18,071,151 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001094632.1| tropomyosin alpha-4 chain [Bos taurus]. 179 3e-45
Alignment gi|XP_002699032.1| PREDICTED: tropomyosin 4-like [Bos taurus]. 139 5e-33
Alignment gi|XP_589950.1| PREDICTED: tropomyosin 4 isoform 1 [Bos taurus]. 139 5e-33
Alignment gi|NP_001011674.1| tropomyosin alpha-3 chain [Bos taurus]. 122 7e-28
Alignment gi|NP_001013608.1| tropomyosin alpha-1 chain [Bos taurus]. 118 7e-27
Alignment gi|XP_002688135.1| PREDICTED: tropomyosin 4-like [Bos taurus]. 112 4e-25
Alignment gi|XP_874820.3| PREDICTED: tropomyosin 4 isoform 2 [Bos taurus]. 112 4e-25
Alignment gi|XP_002688284.1| PREDICTED: tropomyosin 4-like [Bos taurus]. 112 5e-25
Alignment gi|XP_001250860.3| PREDICTED: tropomyosin 4 [Bos taurus]. 112 5e-25
Alignment gi|XP_001252597.2| PREDICTED: tropomyosin 4 [Bos taurus]. 112 5e-25
>ref|NP_001094632.1| tropomyosin alpha-4 chain [Bos taurus].
Length = 284
Score = 179 bits (454), Expect = 3e-45
Identities = 113/217 (52%), Positives = 117/217 (53%), Gaps = 36/217 (16%)
Frame = +2
Query: 149 QRELDGERERREKAEGDVAALNRRIQLVEEELDRAQERXXXXXXXXXXXXXXXXXXXRGM 328
Q +L+ ++ AEGDVAALNRRIQLVEEELDRAQER RGM
Sbjct: 68 QEKLELTEKKASDAEGDVAALNRRIQLVEEELDRAQERLATALQKLEEAEKAADESERGM 127
Query: 329 KVIENRAMKDEEKMEIQE------------------------------------RAEVSE 400
KVIENRAMKDEEKMEIQE RAEVSE
Sbjct: 128 KVIENRAMKDEEKMEIQEMQLKEAKHIAEEADRKYEEVARKLVILEGELERAEERAEVSE 187
Query: 401 LKCGDLEEELKNVTNNLXXXXXXXXXXXXXXXXXXXXXXXXSDKLKXXXXXXXXXXXXXX 580
LKCGDLEEELKNVTNNL SDKLK
Sbjct: 188 LKCGDLEEELKNVTNNLKSLEAASEKYSEKEDKYEEEIKLLSDKLKEAETRAEFAERTVA 247
Query: 581 KLEKTIDDLEEKLAQAKEENVGLHQTLDQTLNELNCI 691
KLEKTIDDLEEKLAQAKEENVGLHQTLDQTLNELNCI
Sbjct: 248 KLEKTIDDLEEKLAQAKEENVGLHQTLDQTLNELNCI 284
>ref|XP_002699032.1| PREDICTED: tropomyosin 4-like [Bos taurus].
Length = 248
Score = 139 bits (349), Expect = 5e-33
Identities = 93/246 (37%), Positives = 119/246 (48%), Gaps = 36/246 (14%)
Frame = +2
Query: 56 MAGLNSLEAVKRKIXXXXXXXXXXXXXXXGLQRELDGERERREKAEGDVAALNRRIQLVE 235
MAG+ ++EAVKRKI LQRE++GE RE+AE +VA+LNRRIQLVE
Sbjct: 1 MAGIPTIEAVKRKIQVLQQQADDAQERAERLQREVEGEGRAREQAEAEVASLNRRIQLVE 60
Query: 236 EELDRAQERXXXXXXXXXXXXXXXXXXXRGMKVIENRAMKDEEKMEIQ------------ 379
EELDRAQER RGMKVIEN+A+KDEEKME+Q
Sbjct: 61 EELDRAQERLATALQKLEEAEKAADESERGMKVIENQALKDEEKMELQEIQLKEAKHIAE 120
Query: 380 ------------------------ERAEVSELKCGDLEEELKNVTNNLXXXXXXXXXXXX 487
ERAE++E +C +++E++K + NL
Sbjct: 121 EADRKYEEVARKLVIIDGDLEGTEERAELAESRCREMDEQIKLMDQNLKCLSAAEEKYSQ 180
Query: 488 XXXXXXXXXXXXSDKLKXXXXXXXXXXXXXXKLEKTIDDLEEKLAQAKEENVGLHQTLDQ 667
+DKLK KLEKTIDDLE+KL KEE++ + LDQ
Sbjct: 181 KEDKYKEEIKILTDKLKEAETRAEFAERLVAKLEKTIDDLEDKLKCTKEEHLCTQRMLDQ 240
Query: 668 TLNELN 685
TL +LN
Sbjct: 241 TLLDLN 246
>ref|XP_589950.1| PREDICTED: tropomyosin 4 isoform 1 [Bos taurus].
Length = 248
Score = 139 bits (349), Expect = 5e-33
Identities = 93/246 (37%), Positives = 119/246 (48%), Gaps = 36/246 (14%)
Frame = +2
Query: 56 MAGLNSLEAVKRKIXXXXXXXXXXXXXXXGLQRELDGERERREKAEGDVAALNRRIQLVE 235
MAG+ ++EAVKRKI LQRE++GE RE+AE +VA+LNRRIQLVE
Sbjct: 1 MAGIPTIEAVKRKIQVLQQQADDAQERAERLQREVEGEGRAREQAEAEVASLNRRIQLVE 60
Query: 236 EELDRAQERXXXXXXXXXXXXXXXXXXXRGMKVIENRAMKDEEKMEIQ------------ 379
EELDRAQER RGMKVIEN+A+KDEEKME+Q
Sbjct: 61 EELDRAQERLATALQKLEEAEKAADESERGMKVIENQALKDEEKMELQEIQLKEAKHIAE 120
Query: 380 ------------------------ERAEVSELKCGDLEEELKNVTNNLXXXXXXXXXXXX 487
ERAE++E +C +++E++K + NL
Sbjct: 121 EADRKYEEVARKLVIIDGDLEGTEERAELAESRCREMDEQIKLMDQNLKCLSAAEEKYSQ 180
Query: 488 XXXXXXXXXXXXSDKLKXXXXXXXXXXXXXXKLEKTIDDLEEKLAQAKEENVGLHQTLDQ 667
+DKLK KLEKTIDDLE+KL KEE++ + LDQ
Sbjct: 181 KEDKYKEEIKILTDKLKEAETRAEFAERLVAKLEKTIDDLEDKLKCTKEEHLCTQRMLDQ 240
Query: 668 TLNELN 685
TL +LN
Sbjct: 241 TLLDLN 246
>ref|NP_001011674.1| tropomyosin alpha-3 chain [Bos taurus].
Length = 284
Score = 122 bits (305), Expect = 7e-28
Identities = 85/244 (34%), Positives = 109/244 (44%), Gaps = 36/244 (14%)
Frame = +2
Query: 68 NSLEAVKRKIXXXXXXXXXXXXXXXGLQRELDGERERREKAEGDVAALNRRIQLVEEELD 247
+ L A+++K+ Q +L+ ++ AE +VA+LNRRIQLVEEELD
Sbjct: 41 DELAAMQKKLKGTEDELDKYSEALKDAQEKLELAEKKAADAEAEVASLNRRIQLVEEELD 100
Query: 248 RAQERXXXXXXXXXXXXXXXXXXXRGMKVIENRAMKDEEKMEIQ---------------- 379
RAQER RGMKVIENRA+KDEEKME+Q
Sbjct: 101 RAQERLATALQKLEEAEKAADESERGMKVIENRALKDEEKMELQEIQLKEAKHIAEEADR 160
Query: 380 --------------------ERAEVSELKCGDLEEELKNVTNNLXXXXXXXXXXXXXXXX 499
ERAE++E KC +LEEELKNVTNNL
Sbjct: 161 KYEEVARKLVIIEGDLERTEERAELAESKCSELEEELKNVTNNLKSLEAQAEKYSQKEDK 220
Query: 500 XXXXXXXXSDKLKXXXXXXXXXXXXXXKLEKTIDDLEEKLAQAKEENVGLHQTLDQTLNE 679
+DKLK KLEKTIDDLE++L K + + + LD LN+
Sbjct: 221 YEEEIKILTDKLKEAETRAEFAERSVAKLEKTIDDLEDELYAQKLKYKAISEELDHALND 280
Query: 680 LNCI 691
+ I
Sbjct: 281 MTSI 284
>ref|NP_001013608.1| tropomyosin alpha-1 chain [Bos taurus].
Length = 284
Score = 118 bits (296), Expect = 7e-27
Identities = 83/217 (38%), Positives = 99/217 (45%), Gaps = 36/217 (16%)
Frame = +2
Query: 149 QRELDGERERREKAEGDVAALNRRIQLVEEELDRAQERXXXXXXXXXXXXXXXXXXXRGM 328
Q +L+ ++ AE DVA+LNRRIQLVEEELDRAQER RGM
Sbjct: 68 QEKLELAEKKATDAEADVASLNRRIQLVEEELDRAQERLATALQKLEEAEKAADESERGM 127
Query: 329 KVIENRAMKDEEKMEIQ------------------------------------ERAEVSE 400
KVIE+RA KDEEKMEIQ ERAE+SE
Sbjct: 128 KVIESRAQKDEEKMEIQEIQLKEAKHIAEDADRKYEEVARKLVIIESDLERAEERAELSE 187
Query: 401 LKCGDLEEELKNVTNNLXXXXXXXXXXXXXXXXXXXXXXXXSDKLKXXXXXXXXXXXXXX 580
KC +LEEELK VTNNL SDKLK
Sbjct: 188 GKCAELEEELKTVTNNLKSLEAQAEKYSQKEDKYEEEIKVLSDKLKEAETRAEFAERSVT 247
Query: 581 KLEKTIDDLEEKLAQAKEENVGLHQTLDQTLNELNCI 691
KLEK+IDDLE++L K + + + LD LN++ I
Sbjct: 248 KLEKSIDDLEDELYAQKLKYKAISEELDHALNDMTSI 284
>ref|XP_002688135.1| PREDICTED: tropomyosin 4-like [Bos taurus].
Length = 248
Score = 112 bits (281), Expect = 4e-25
Identities = 82/246 (33%), Positives = 112/246 (45%), Gaps = 36/246 (14%)
Frame = +2
Query: 56 MAGLNSLEAVKRKIXXXXXXXXXXXXXXXGLQRELDGERERREKAEGDVAALNRRIQLVE 235
MA + EA+K KI LQ+++DGER RE+AE +V +LNRRIQLVE
Sbjct: 1 MAAIAVTEAMKCKIQVLQQQADDAEERAKRLQQKVDGERWAREQAEAEVVSLNRRIQLVE 60
Query: 236 EELDRAQERXXXXXXXXXXXXXXXXXXXRGMKVIENRAMKDEEKMEIQ------------ 379
EEL+RAQER R MKVIEN+A+KDEEKME+Q
Sbjct: 61 EELNRAQERLATALQKLEEAEKAADESERVMKVIENQALKDEEKMELQEIQLKEAKHIAE 120
Query: 380 ------------------------ERAEVSELKCGDLEEELKNVTNNLXXXXXXXXXXXX 487
ERAE+++ +C + E+++ + +L
Sbjct: 121 EAHRKYEEVARKLVIIEGDLERTEERAELAQSRCRKMGEQIRLMDQHLKCLSAAEEKYSQ 180
Query: 488 XXXXXXXXXXXXSDKLKXXXXXXXXXXXXXXKLEKTIDDLEEKLAQAKEENVGLHQTLDQ 667
++KLK KLEKTIDDLE+KL KEE++ + L+Q
Sbjct: 181 KEDKYEEEIKILTEKLKEAETRAEFAERSVAKLEKTIDDLEDKLKCTKEEDLCTQRMLNQ 240
Query: 668 TLNELN 685
TL +LN
Sbjct: 241 TLLDLN 246
>ref|XP_874820.3| PREDICTED: tropomyosin 4 isoform 2 [Bos taurus].
Length = 248
Score = 112 bits (281), Expect = 4e-25
Identities = 82/246 (33%), Positives = 112/246 (45%), Gaps = 36/246 (14%)
Frame = +2
Query: 56 MAGLNSLEAVKRKIXXXXXXXXXXXXXXXGLQRELDGERERREKAEGDVAALNRRIQLVE 235
MA + EA+K KI LQ+++DGER RE+AE +V +LNRRIQLVE
Sbjct: 1 MAAIAVTEAMKCKIQVLQQQADDAEERAKRLQQKVDGERWAREQAEAEVVSLNRRIQLVE 60
Query: 236 EELDRAQERXXXXXXXXXXXXXXXXXXXRGMKVIENRAMKDEEKMEIQ------------ 379
EEL+RAQER R MKVIEN+A+KDEEKME+Q
Sbjct: 61 EELNRAQERLATALQKLEEAEKAADESERVMKVIENQALKDEEKMELQEIQLKEAKHIAE 120
Query: 380 ------------------------ERAEVSELKCGDLEEELKNVTNNLXXXXXXXXXXXX 487
ERAE+++ +C + E+++ + +L
Sbjct: 121 EAHRKYEEVARKLVIIEGDLERTEERAELAQSRCRKMGEQIRLMDQHLKCLSAAEEKYSQ 180
Query: 488 XXXXXXXXXXXXSDKLKXXXXXXXXXXXXXXKLEKTIDDLEEKLAQAKEENVGLHQTLDQ 667
++KLK KLEKTIDDLE+KL KEE++ + L+Q
Sbjct: 181 KEDKYEEEIKILTEKLKEAETRAEFAERSVAKLEKTIDDLEDKLKCTKEEDLCTQRMLNQ 240
Query: 668 TLNELN 685
TL +LN
Sbjct: 241 TLLDLN 246
>ref|XP_002688284.1| PREDICTED: tropomyosin 4-like [Bos taurus].
Length = 248
Score = 112 bits (280), Expect = 5e-25
Identities = 83/246 (33%), Positives = 111/246 (45%), Gaps = 36/246 (14%)
Frame = +2
Query: 56 MAGLNSLEAVKRKIXXXXXXXXXXXXXXXGLQRELDGERERREKAEGDVAALNRRIQLVE 235
MA + EA+K KI LQ++++GER RE+AE +V +LNRRIQLVE
Sbjct: 1 MAAIAVTEAMKCKIQVLQQQADDAEERAKCLQQKVEGERWAREQAEAEVVSLNRRIQLVE 60
Query: 236 EELDRAQERXXXXXXXXXXXXXXXXXXXRGMKVIENRAMKDEEKMEIQ------------ 379
EEL+RAQER R MKVIEN+A+KDEEKME+Q
Sbjct: 61 EELNRAQERLATELQKLEEAEKAADESERVMKVIENQALKDEEKMELQEIQLKEAKHIAE 120
Query: 380 ------------------------ERAEVSELKCGDLEEELKNVTNNLXXXXXXXXXXXX 487
ERAE++E +C + E+ + + +L
Sbjct: 121 EAHRKYEEVARKLVIIEGDLERTEERAELAESRCRKMGEQTRLMDQHLKCLSAAEEKYSQ 180
Query: 488 XXXXXXXXXXXXSDKLKXXXXXXXXXXXXXXKLEKTIDDLEEKLAQAKEENVGLHQTLDQ 667
+DKLK KLEKTIDDLE+KL KEE++ + L+Q
Sbjct: 181 KEDKYEEEIKILTDKLKEAETRAEFAERSVAKLEKTIDDLEDKLKCTKEEDLCTQRMLNQ 240
Query: 668 TLNELN 685
TL +LN
Sbjct: 241 TLLDLN 246
>ref|XP_001250860.3| PREDICTED: tropomyosin 4 [Bos taurus].
Length = 248
Score = 112 bits (280), Expect = 5e-25
Identities = 83/246 (33%), Positives = 111/246 (45%), Gaps = 36/246 (14%)
Frame = +2
Query: 56 MAGLNSLEAVKRKIXXXXXXXXXXXXXXXGLQRELDGERERREKAEGDVAALNRRIQLVE 235
MA + EA+K KI LQ++++GER RE+AE +V +LNRRIQLVE
Sbjct: 1 MAAIAVTEAMKCKIQVLQQQADDAEERAKCLQQKVEGERWAREQAEAEVVSLNRRIQLVE 60
Query: 236 EELDRAQERXXXXXXXXXXXXXXXXXXXRGMKVIENRAMKDEEKMEIQ------------ 379
EEL+RAQER R MKVIEN+A+KDEEKME+Q
Sbjct: 61 EELNRAQERLATELQKLEEAEKAADESERVMKVIENQALKDEEKMELQEIQLKEAKHIAE 120
Query: 380 ------------------------ERAEVSELKCGDLEEELKNVTNNLXXXXXXXXXXXX 487
ERAE++E +C + E+ + + +L
Sbjct: 121 EAHRKYEEVARKLVIIEGDLERTEERAELAESRCRKMGEQTRLMDQHLKCLSAAEEKYSQ 180
Query: 488 XXXXXXXXXXXXSDKLKXXXXXXXXXXXXXXKLEKTIDDLEEKLAQAKEENVGLHQTLDQ 667
+DKLK KLEKTIDDLE+KL KEE++ + L+Q
Sbjct: 181 KEDKYEEEIKILTDKLKEAETRAEFAERSVAKLEKTIDDLEDKLKCTKEEDLCTQRMLNQ 240
Query: 668 TLNELN 685
TL +LN
Sbjct: 241 TLLDLN 246
>ref|XP_001252597.2| PREDICTED: tropomyosin 4 [Bos taurus].
Length = 248
Score = 112 bits (280), Expect = 5e-25
Identities = 83/246 (33%), Positives = 111/246 (45%), Gaps = 36/246 (14%)
Frame = +2
Query: 56 MAGLNSLEAVKRKIXXXXXXXXXXXXXXXGLQRELDGERERREKAEGDVAALNRRIQLVE 235
MA + EA+K KI LQ++++GER RE+AE +V +LNRRIQLVE
Sbjct: 1 MAAIAVTEAMKCKIQVLQQQADDAEERAKCLQQKVEGERWAREQAEAEVVSLNRRIQLVE 60
Query: 236 EELDRAQERXXXXXXXXXXXXXXXXXXXRGMKVIENRAMKDEEKMEIQ------------ 379
EEL+RAQER R MKVIEN+A+KDEEKME+Q
Sbjct: 61 EELNRAQERLATELQKLEEAEKAADESERVMKVIENQALKDEEKMELQEIQLKEAKHIAE 120
Query: 380 ------------------------ERAEVSELKCGDLEEELKNVTNNLXXXXXXXXXXXX 487
ERAE++E +C + E+ + + +L
Sbjct: 121 EAHRKYEEVARKLVIIEGDLERTEERAELAESRCRKMGEQTRLMDQHLKCLSAAEEKYSQ 180
Query: 488 XXXXXXXXXXXXSDKLKXXXXXXXXXXXXXXKLEKTIDDLEEKLAQAKEENVGLHQTLDQ 667
+DKLK KLEKTIDDLE+KL KEE++ + L+Q
Sbjct: 181 KEDKYEEEIKILTDKLKEAETRAEFAERSVAKLEKTIDDLEDKLKCTKEEDLCTQRMLNQ 240
Query: 668 TLNELN 685
TL +LN
Sbjct: 241 TLLDLN 246
Database: RefSeq44_BP.fasta
Posted date: Nov 15, 2010 4:36 PM
Number of letters in database: 18,071,151
Number of sequences in database: 33,615
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33615
Number of Hits to DB: 24,370,811
Number of extensions: 510606
Number of successful extensions: 2097
Number of sequences better than 1.0e-05: 13
Number of HSP's gapped: 2076
Number of HSP's successfully gapped: 23
Length of query: 332
Length of database: 18,071,151
Length adjustment: 103
Effective length of query: 229
Effective length of database: 14,608,806
Effective search space: 3345416574
Effective search space used: 3345416574
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel44
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20070806S-063353
(997 letters)
Database: RefSeq44_CP.fasta
33,359 sequences; 18,921,627 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_866109.1| PREDICTED: similar to tropomyosin 1, alpha isof... 179 4e-45
Alignment gi|XP_852641.1| PREDICTED: similar to tropomyosin 1, alpha isof... 179 4e-45
Alignment gi|XP_866095.1| PREDICTED: similar to tropomyosin 1 (alpha) iso... 176 2e-44
Alignment gi|XP_865148.1| PREDICTED: similar to tropomyosin 1 alpha chain... 170 2e-42
Alignment gi|XP_865805.1| PREDICTED: similar to tropomyosin 3 isoform 2 i... 159 5e-39
Alignment gi|XP_865093.1| PREDICTED: similar to tropomyosin 1 alpha chain... 152 6e-37
Alignment gi|XP_865836.1| PREDICTED: similar to tropomyosin 3, gamma isof... 150 2e-36
Alignment gi|XP_865128.1| PREDICTED: similar to tropomyosin 1 alpha chain... 147 2e-35
Alignment gi|XP_541810.2| PREDICTED: similar to tropomyosin 3 isoform 2 i... 142 4e-34
Alignment gi|XP_865919.1| PREDICTED: similar to tropomyosin 3 isoform 2 i... 142 4e-34
>ref|XP_866109.1| PREDICTED: similar to tropomyosin 1, alpha isoform 4 [Canis
familiaris].
Length = 328
Score = 179 bits (454), Expect = 4e-45
Identities = 113/217 (52%), Positives = 117/217 (53%), Gaps = 36/217 (16%)
Frame = +2
Query: 149 QRELDGERERREKAEGDVAALNRRIQLVEEELDRAQERXXXXXXXXXXXXXXXXXXXRGM 328
Q +L+ ++ AEGDVAALNRRIQLVEEELDRAQER RGM
Sbjct: 112 QEKLELTEKKASDAEGDVAALNRRIQLVEEELDRAQERLATALQKLEEAEKAADESERGM 171
Query: 329 KVIENRAMKDEEKMEIQE------------------------------------RAEVSE 400
KVIENRAMKDEEKMEIQE RAEVSE
Sbjct: 172 KVIENRAMKDEEKMEIQEMQLKEAKHIAEEADRKYEEVARKLVILEGELERAEERAEVSE 231
Query: 401 LKCGDLEEELKNVTNNLXXXXXXXXXXXXXXXXXXXXXXXXSDKLKXXXXXXXXXXXXXX 580
LKCGDLEEELKNVTNNL SDKLK
Sbjct: 232 LKCGDLEEELKNVTNNLKSLEAASEKYSEKEDKYEEEIKLLSDKLKEAETRAEFAERTVA 291
Query: 581 KLEKTIDDLEEKLAQAKEENVGLHQTLDQTLNELNCI 691
KLEKTIDDLEEKLAQAKEENVGLHQTLDQTLNELNCI
Sbjct: 292 KLEKTIDDLEEKLAQAKEENVGLHQTLDQTLNELNCI 328
>ref|XP_852641.1| PREDICTED: similar to tropomyosin 1, alpha isoform 2 [Canis
familiaris].
Length = 284
Score = 179 bits (454), Expect = 4e-45
Identities = 113/217 (52%), Positives = 117/217 (53%), Gaps = 36/217 (16%)
Frame = +2
Query: 149 QRELDGERERREKAEGDVAALNRRIQLVEEELDRAQERXXXXXXXXXXXXXXXXXXXRGM 328
Q +L+ ++ AEGDVAALNRRIQLVEEELDRAQER RGM
Sbjct: 68 QEKLELTEKKASDAEGDVAALNRRIQLVEEELDRAQERLATALQKLEEAEKAADESERGM 127
Query: 329 KVIENRAMKDEEKMEIQE------------------------------------RAEVSE 400
KVIENRAMKDEEKMEIQE RAEVSE
Sbjct: 128 KVIENRAMKDEEKMEIQEMQLKEAKHIAEEADRKYEEVARKLVILEGELERAEERAEVSE 187
Query: 401 LKCGDLEEELKNVTNNLXXXXXXXXXXXXXXXXXXXXXXXXSDKLKXXXXXXXXXXXXXX 580
LKCGDLEEELKNVTNNL SDKLK
Sbjct: 188 LKCGDLEEELKNVTNNLKSLEAASEKYSEKEDKYEEEIKLLSDKLKEAETRAEFAERTVA 247
Query: 581 KLEKTIDDLEEKLAQAKEENVGLHQTLDQTLNELNCI 691
KLEKTIDDLEEKLAQAKEENVGLHQTLDQTLNELNCI
Sbjct: 248 KLEKTIDDLEEKLAQAKEENVGLHQTLDQTLNELNCI 284
>ref|XP_866095.1| PREDICTED: similar to tropomyosin 1 (alpha) isoform 3 [Canis
familiaris].
Length = 279
Score = 176 bits (447), Expect = 2e-44
Identities = 111/205 (54%), Positives = 112/205 (54%), Gaps = 36/205 (17%)
Frame = +2
Query: 185 KAEGDVAALNRRIQLVEEELDRAQERXXXXXXXXXXXXXXXXXXXRGMKVIENRAMKDEE 364
+AEGDVAALNRRIQLVEEELDRAQER RGMKVIENRAMKDEE
Sbjct: 75 EAEGDVAALNRRIQLVEEELDRAQERLATALQKLEEAEKAADESERGMKVIENRAMKDEE 134
Query: 365 KMEIQE------------------------------------RAEVSELKCGDLEEELKN 436
KMEIQE RAEVSELKCGDLEEELKN
Sbjct: 135 KMEIQEMQLKEAKHIAEEADRKYEEVARKLVILEGELERAEERAEVSELKCGDLEEELKN 194
Query: 437 VTNNLXXXXXXXXXXXXXXXXXXXXXXXXSDKLKXXXXXXXXXXXXXXKLEKTIDDLEEK 616
VTNNL SDKLK KLEKTIDDLEEK
Sbjct: 195 VTNNLKSLEAASEKYSEKEDKYEEEIKLLSDKLKEAETRAEFAERTVAKLEKTIDDLEEK 254
Query: 617 LAQAKEENVGLHQTLDQTLNELNCI 691
LAQAKEENVGLHQTLDQTLNELNCI
Sbjct: 255 LAQAKEENVGLHQTLDQTLNELNCI 279
>ref|XP_865148.1| PREDICTED: similar to tropomyosin 1 alpha chain isoform 6 isoform
19 [Canis familiaris].
Length = 248
Score = 170 bits (431), Expect = 2e-42
Identities = 113/246 (45%), Positives = 124/246 (50%), Gaps = 36/246 (14%)
Frame = +2
Query: 56 MAGLNSLEAVKRKIXXXXXXXXXXXXXXXGLQRELDGERERREKAEGDVAALNRRIQLVE 235
MAG +SLEAV+RKI LQRELD ER+ RE AE DVA+LNRRIQLVE
Sbjct: 1 MAGSSSLEAVRRKIRSLQEQADAAEERAGSLQRELDYERKLRETAEADVASLNRRIQLVE 60
Query: 236 EELDRAQERXXXXXXXXXXXXXXXXXXXRGMKVIENRAMKDEEKMEIQ------------ 379
EELDRAQER RGMKVIE+RA KDEEKMEIQ
Sbjct: 61 EELDRAQERLATALQKLEEAEKAADESERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAE 120
Query: 380 ------------------------ERAEVSELKCGDLEEELKNVTNNLXXXXXXXXXXXX 487
ERAE+SE KC +LEEELK VTNNL
Sbjct: 121 DADRKYEEVARKLVIIESDLERAEERAELSESKCAELEEELKTVTNNLKSLEAQAEKYSQ 180
Query: 488 XXXXXXXXXXXXSDKLKXXXXXXXXXXXXXXKLEKTIDDLEEKLAQAKEENVGLHQTLDQ 667
SDKLK KLEK+IDDLEEK+A AKEEN+ +HQ LDQ
Sbjct: 181 KEDKYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEEKVAHAKEENLSMHQMLDQ 240
Query: 668 TLNELN 685
TL ELN
Sbjct: 241 TLLELN 246
>ref|XP_865805.1| PREDICTED: similar to tropomyosin 3 isoform 2 isoform 17 [Canis
familiaris].
Length = 248
Score = 159 bits (401), Expect = 5e-39
Identities = 104/246 (42%), Positives = 123/246 (50%), Gaps = 36/246 (14%)
Frame = +2
Query: 56 MAGLNSLEAVKRKIXXXXXXXXXXXXXXXGLQRELDGERERREKAEGDVAALNRRIQLVE 235
MAG+ ++EAVKRKI LQRE++GER RE+AE +VA+LNRRIQLVE
Sbjct: 1 MAGITTIEAVKRKIQVLQQQADDAEERAERLQREVEGERRAREQAEAEVASLNRRIQLVE 60
Query: 236 EELDRAQERXXXXXXXXXXXXXXXXXXXRGMKVIENRAMKDEEKMEIQ------------ 379
EELDRAQER RGMKVIENRA+KDEEKME+Q
Sbjct: 61 EELDRAQERLATALQKLEEAEKAADESERGMKVIENRALKDEEKMELQEIQLKEAKHIAE 120
Query: 380 ------------------------ERAEVSELKCGDLEEELKNVTNNLXXXXXXXXXXXX 487
ERAE++E KC +LEEELKNVTNNL
Sbjct: 121 EADRKYEEVARKLVIIEGDLERTEERAELAESKCSELEEELKNVTNNLKSLEAQAEKYSQ 180
Query: 488 XXXXXXXXXXXXSDKLKXXXXXXXXXXXXXXKLEKTIDDLEEKLAQAKEENVGLHQTLDQ 667
+DKLK KLEKTIDDLE+KL KEE++ + LDQ
Sbjct: 181 KEDKYEEEIKILTDKLKEAETRAEFAERSVAKLEKTIDDLEDKLKCTKEEHLCTQRMLDQ 240
Query: 668 TLNELN 685
TL +LN
Sbjct: 241 TLLDLN 246
>ref|XP_865093.1| PREDICTED: similar to tropomyosin 1 alpha chain isoform 4 isoform
16 [Canis familiaris].
Length = 248
Score = 152 bits (383), Expect = 6e-37
Identities = 105/246 (42%), Positives = 119/246 (48%), Gaps = 36/246 (14%)
Frame = +2
Query: 56 MAGLNSLEAVKRKIXXXXXXXXXXXXXXXGLQRELDGERERREKAEGDVAALNRRIQLVE 235
MAG +SLEAV+RKI LQRELD ER+ RE AE DVA+LNRRIQLVE
Sbjct: 1 MAGSSSLEAVRRKIRSLQEQADAAEERAGSLQRELDYERKLRETAEADVASLNRRIQLVE 60
Query: 236 EELDRAQERXXXXXXXXXXXXXXXXXXXRGMKVIENRAMKDEEKMEIQ------------ 379
EELDRAQER RGMKVIE+RA KDEEKMEIQ
Sbjct: 61 EELDRAQERLATALQKLEEAEKAADESERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAE 120
Query: 380 ------------------------ERAEVSELKCGDLEEELKNVTNNLXXXXXXXXXXXX 487
ERAE+SE + LEE+L+ + L
Sbjct: 121 DADRKYEEVARKLVIIESDLERAEERAELSESQVRQLEEQLRIMDQTLKALMAAEDKYSQ 180
Query: 488 XXXXXXXXXXXXSDKLKXXXXXXXXXXXXXXKLEKTIDDLEEKLAQAKEENVGLHQTLDQ 667
SDKLK KLEK+IDDLEEK+A AKEEN+ +HQ LDQ
Sbjct: 181 KEDKYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEEKVAHAKEENLSMHQMLDQ 240
Query: 668 TLNELN 685
TL ELN
Sbjct: 241 TLLELN 246
>ref|XP_865836.1| PREDICTED: similar to tropomyosin 3, gamma isoform 19 [Canis
familiaris].
Length = 248
Score = 150 bits (379), Expect = 2e-36
Identities = 99/248 (39%), Positives = 120/248 (48%), Gaps = 36/248 (14%)
Frame = +2
Query: 56 MAGLNSLEAVKRKIXXXXXXXXXXXXXXXGLQRELDGERERREKAEGDVAALNRRIQLVE 235
MAG+ ++EAVKRKI LQRE++GER RE+AE +VA+LNRRIQLVE
Sbjct: 1 MAGITTIEAVKRKIQVLQQQADDAEERAERLQREVEGERRAREQAEAEVASLNRRIQLVE 60
Query: 236 EELDRAQERXXXXXXXXXXXXXXXXXXXRGMKVIENRAMKDEEKMEIQ------------ 379
EELDRAQER RGMKVIENRA+KDEEKME+Q
Sbjct: 61 EELDRAQERLATALQKLEEAEKAADESERGMKVIENRALKDEEKMELQEIQLKEAKHIAE 120
Query: 380 ------------------------ERAEVSELKCGDLEEELKNVTNNLXXXXXXXXXXXX 487
ERAE++E KC +LEEELKNVTNNL
Sbjct: 121 EADRKYEEVARKLVIIEGDLERTEERAELAESKCSELEEELKNVTNNLKSLEAQAEKYSQ 180
Query: 488 XXXXXXXXXXXXSDKLKXXXXXXXXXXXXXXKLEKTIDDLEEKLAQAKEENVGLHQTLDQ 667
+DKLK KLEKTIDDLE++L K + + + LD
Sbjct: 181 KEDKYEEEIKILTDKLKEAETRAEFAERSVAKLEKTIDDLEDELYAQKLKYKAISEELDH 240
Query: 668 TLNELNCI 691
LN++ I
Sbjct: 241 ALNDMTSI 248
>ref|XP_865128.1| PREDICTED: similar to tropomyosin 1 alpha chain isoform 6 isoform
18 [Canis familiaris].
Length = 248
Score = 147 bits (371), Expect = 2e-35
Identities = 102/248 (41%), Positives = 117/248 (47%), Gaps = 36/248 (14%)
Frame = +2
Query: 56 MAGLNSLEAVKRKIXXXXXXXXXXXXXXXGLQRELDGERERREKAEGDVAALNRRIQLVE 235
MAG +SLEAV+RKI LQRELD ER+ RE AE DVA+LNRRIQLVE
Sbjct: 1 MAGSSSLEAVRRKIRSLQEQADAAEERAGSLQRELDYERKLRETAEADVASLNRRIQLVE 60
Query: 236 EELDRAQERXXXXXXXXXXXXXXXXXXXRGMKVIENRAMKDEEKMEIQ------------ 379
EELDRAQER RGMKVIE+RA KDEEKMEIQ
Sbjct: 61 EELDRAQERLATALQKLEEAEKAADESERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAE 120
Query: 380 ------------------------ERAEVSELKCGDLEEELKNVTNNLXXXXXXXXXXXX 487
ERAE+SE KC +LEEELK VTNNL
Sbjct: 121 DADRKYEEVARKLVIIESDLERAEERAELSESKCAELEEELKTVTNNLKSLEAQAEKYSQ 180
Query: 488 XXXXXXXXXXXXSDKLKXXXXXXXXXXXXXXKLEKTIDDLEEKLAQAKEENVGLHQTLDQ 667
SDKLK KLEK+IDDLE++L K + + + LD
Sbjct: 181 KEDKYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEDELYAQKLKYKAISEELDH 240
Query: 668 TLNELNCI 691
LN++ I
Sbjct: 241 ALNDMTSI 248
>ref|XP_541810.2| PREDICTED: similar to tropomyosin 3 isoform 2 isoform 2 [Canis
familiaris].
Length = 248
Score = 142 bits (359), Expect = 4e-34
Identities = 94/246 (38%), Positives = 120/246 (48%), Gaps = 36/246 (14%)
Frame = +2
Query: 56 MAGLNSLEAVKRKIXXXXXXXXXXXXXXXGLQRELDGERERREKAEGDVAALNRRIQLVE 235
MAG+ ++EAVKRKI LQRE++GER RE+AE +VA+LNRRIQLVE
Sbjct: 1 MAGITTIEAVKRKIQVLQQQADDAEERAERLQREVEGERRAREQAEAEVASLNRRIQLVE 60
Query: 236 EELDRAQERXXXXXXXXXXXXXXXXXXXRGMKVIENRAMKDEEKMEIQ------------ 379
EELDRAQER RGMKVIENRA+KDEEKME+Q
Sbjct: 61 EELDRAQERLATALQKLEEAEKAADESERGMKVIENRALKDEEKMELQEIQLKEAKHIAE 120
Query: 380 ------------------------ERAEVSELKCGDLEEELKNVTNNLXXXXXXXXXXXX 487
ERAE++E +C +++E+++ + NL
Sbjct: 121 EADRKYEEVARKLVIIEGDLERTEERAELAESRCREMDEQIRLMDQNLKCLSAAEEKYSQ 180
Query: 488 XXXXXXXXXXXXSDKLKXXXXXXXXXXXXXXKLEKTIDDLEEKLAQAKEENVGLHQTLDQ 667
+DKLK KLEKTIDDLE+KL KEE++ + LDQ
Sbjct: 181 KEDKYEEEIKILTDKLKEAETRAEFAERSVAKLEKTIDDLEDKLKCTKEEHLCTQRMLDQ 240
Query: 668 TLNELN 685
TL +LN
Sbjct: 241 TLLDLN 246
>ref|XP_865919.1| PREDICTED: similar to tropomyosin 3 isoform 2 isoform 25 [Canis
familiaris].
Length = 248
Score = 142 bits (359), Expect = 4e-34
Identities = 94/246 (38%), Positives = 120/246 (48%), Gaps = 36/246 (14%)
Frame = +2
Query: 56 MAGLNSLEAVKRKIXXXXXXXXXXXXXXXGLQRELDGERERREKAEGDVAALNRRIQLVE 235
MAG+ ++EAVKRKI LQRE++GER RE+AE +VA+LNRRIQLVE
Sbjct: 1 MAGITTIEAVKRKIQVLQQQADDAEERAERLQREVEGERRAREQAEAEVASLNRRIQLVE 60
Query: 236 EELDRAQERXXXXXXXXXXXXXXXXXXXRGMKVIENRAMKDEEKMEIQ------------ 379
EELDRAQER RGMKVIENRA+KDEEKME+Q
Sbjct: 61 EELDRAQERLATALQKLEEAEKAADESERGMKVIENRALKDEEKMELQEIQLKEAKHIAE 120
Query: 380 ------------------------ERAEVSELKCGDLEEELKNVTNNLXXXXXXXXXXXX 487
ERAE++E +C +++E+++ + NL
Sbjct: 121 EADRKYEEVARKLVIIEGDLERTEERAELAESRCREMDEQIRLMDQNLKCLSAAEEKYSQ 180
Query: 488 XXXXXXXXXXXXSDKLKXXXXXXXXXXXXXXKLEKTIDDLEEKLAQAKEENVGLHQTLDQ 667
+DKLK KLEKTIDDLE+KL KEE++ + LDQ
Sbjct: 181 KEDKYEEEIKILTDKLKEAETRAEFAERSVAKLEKTIDDLEDKLKCTKEEHLCTQRMLDQ 240
Query: 668 TLNELN 685
TL +LN
Sbjct: 241 TLLDLN 246
Database: RefSeq44_CP.fasta
Posted date: Nov 15, 2010 4:36 PM
Number of letters in database: 18,921,627
Number of sequences in database: 33,359
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33359
Number of Hits to DB: 25,054,582
Number of extensions: 520428
Number of successful extensions: 2600
Number of sequences better than 1.0e-05: 81
Number of HSP's gapped: 2438
Number of HSP's successfully gapped: 125
Length of query: 332
Length of database: 18,921,627
Length adjustment: 103
Effective length of query: 229
Effective length of database: 15,485,650
Effective search space: 3546213850
Effective search space used: 3546213850
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel44
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20070806S-063353
(997 letters)
Database: RefSeq44_HP.fasta
33,950 sequences; 18,324,212 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_003281.1| tropomyosin alpha-4 chain isoform 2 [Homo sapie... 224 7e-59
Alignment gi|NP_001138632.1| tropomyosin alpha-4 chain isoform 1 [Homo sa... 179 4e-45
Alignment gi|NP_001036816.1| tropomyosin alpha-3 chain isoform 4 [Homo sa... 159 5e-39
Alignment gi|NP_001036818.1| tropomyosin alpha-3 chain isoform 5 [Homo sa... 149 3e-36
Alignment gi|NP_001018008.1| tropomyosin alpha-1 chain isoform 6 [Homo sa... 146 3e-35
Alignment gi|NP_705935.1| tropomyosin alpha-3 chain isoform 2 [Homo sapie... 142 4e-34
Alignment gi|NP_001018007.1| tropomyosin alpha-1 chain isoform 2 [Homo sa... 141 8e-34
Alignment gi|NP_001018004.1| tropomyosin alpha-1 chain isoform 3 [Homo sa... 141 8e-34
Alignment gi|NP_001036817.1| tropomyosin alpha-3 chain isoform 3 [Homo sa... 133 2e-31
Alignment gi|NP_998839.1| tropomyosin beta chain isoform 2 [Homo sapiens]. 130 2e-30
>ref|NP_003281.1| tropomyosin alpha-4 chain isoform 2 [Homo sapiens].
Length = 248
Score = 224 bits (572), Expect = 7e-59
Identities = 140/248 (56%), Positives = 140/248 (56%), Gaps = 36/248 (14%)
Frame = +2
Query: 56 MAGLNSLEAVKRKIXXXXXXXXXXXXXXXGLQRELDGERERREKAEGDVAALNRRIQLVE 235
MAGLNSLEAVKRKI GLQRELDGERERREKAEGDVAALNRRIQLVE
Sbjct: 1 MAGLNSLEAVKRKIQALQQQADEAEDRAQGLQRELDGERERREKAEGDVAALNRRIQLVE 60
Query: 236 EELDRAQERXXXXXXXXXXXXXXXXXXXRGMKVIENRAMKDEEKMEIQ------------ 379
EELDRAQER RGMKVIENRAMKDEEKMEIQ
Sbjct: 61 EELDRAQERLATALQKLEEAEKAADESERGMKVIENRAMKDEEKMEIQEMQLKEAKHIAE 120
Query: 380 ------------------------ERAEVSELKCGDLEEELKNVTNNLXXXXXXXXXXXX 487
ERAEVSELKCGDLEEELKNVTNNL
Sbjct: 121 EADRKYEEVARKLVILEGELERAEERAEVSELKCGDLEEELKNVTNNLKSLEAASEKYSE 180
Query: 488 XXXXXXXXXXXXSDKLKXXXXXXXXXXXXXXKLEKTIDDLEEKLAQAKEENVGLHQTLDQ 667
SDKLK KLEKTIDDLEEKLAQAKEENVGLHQTLDQ
Sbjct: 181 KEDKYEEEIKLLSDKLKEAETRAEFAERTVAKLEKTIDDLEEKLAQAKEENVGLHQTLDQ 240
Query: 668 TLNELNCI 691
TLNELNCI
Sbjct: 241 TLNELNCI 248
>ref|NP_001138632.1| tropomyosin alpha-4 chain isoform 1 [Homo sapiens].
Length = 284
Score = 179 bits (454), Expect = 4e-45
Identities = 113/217 (52%), Positives = 117/217 (53%), Gaps = 36/217 (16%)
Frame = +2
Query: 149 QRELDGERERREKAEGDVAALNRRIQLVEEELDRAQERXXXXXXXXXXXXXXXXXXXRGM 328
Q +L+ ++ AEGDVAALNRRIQLVEEELDRAQER RGM
Sbjct: 68 QEKLELTEKKASDAEGDVAALNRRIQLVEEELDRAQERLATALQKLEEAEKAADESERGM 127
Query: 329 KVIENRAMKDEEKMEIQE------------------------------------RAEVSE 400
KVIENRAMKDEEKMEIQE RAEVSE
Sbjct: 128 KVIENRAMKDEEKMEIQEMQLKEAKHIAEEADRKYEEVARKLVILEGELERAEERAEVSE 187
Query: 401 LKCGDLEEELKNVTNNLXXXXXXXXXXXXXXXXXXXXXXXXSDKLKXXXXXXXXXXXXXX 580
LKCGDLEEELKNVTNNL SDKLK
Sbjct: 188 LKCGDLEEELKNVTNNLKSLEAASEKYSEKEDKYEEEIKLLSDKLKEAETRAEFAERTVA 247
Query: 581 KLEKTIDDLEEKLAQAKEENVGLHQTLDQTLNELNCI 691
KLEKTIDDLEEKLAQAKEENVGLHQTLDQTLNELNCI
Sbjct: 248 KLEKTIDDLEEKLAQAKEENVGLHQTLDQTLNELNCI 284
>ref|NP_001036816.1| tropomyosin alpha-3 chain isoform 4 [Homo sapiens].
Length = 248
Score = 159 bits (401), Expect = 5e-39
Identities = 104/246 (42%), Positives = 123/246 (50%), Gaps = 36/246 (14%)
Frame = +2
Query: 56 MAGLNSLEAVKRKIXXXXXXXXXXXXXXXGLQRELDGERERREKAEGDVAALNRRIQLVE 235
MAG+ ++EAVKRKI LQRE++GER RE+AE +VA+LNRRIQLVE
Sbjct: 1 MAGITTIEAVKRKIQVLQQQADDAEERAERLQREVEGERRAREQAEAEVASLNRRIQLVE 60
Query: 236 EELDRAQERXXXXXXXXXXXXXXXXXXXRGMKVIENRAMKDEEKMEIQ------------ 379
EELDRAQER RGMKVIENRA+KDEEKME+Q
Sbjct: 61 EELDRAQERLATALQKLEEAEKAADESERGMKVIENRALKDEEKMELQEIQLKEAKHIAE 120
Query: 380 ------------------------ERAEVSELKCGDLEEELKNVTNNLXXXXXXXXXXXX 487
ERAE++E KC +LEEELKNVTNNL
Sbjct: 121 EADRKYEEVARKLVIIEGDLERTEERAELAESKCSELEEELKNVTNNLKSLEAQAEKYSQ 180
Query: 488 XXXXXXXXXXXXSDKLKXXXXXXXXXXXXXXKLEKTIDDLEEKLAQAKEENVGLHQTLDQ 667
+DKLK KLEKTIDDLE+KL KEE++ + LDQ
Sbjct: 181 KEDKYEEEIKILTDKLKEAETRAEFAERSVAKLEKTIDDLEDKLKCTKEEHLCTQRMLDQ 240
Query: 668 TLNELN 685
TL +LN
Sbjct: 241 TLLDLN 246
>ref|NP_001036818.1| tropomyosin alpha-3 chain isoform 5 [Homo sapiens].
Length = 247
Score = 149 bits (377), Expect = 3e-36
Identities = 101/245 (41%), Positives = 118/245 (48%), Gaps = 36/245 (14%)
Frame = +2
Query: 56 MAGLNSLEAVKRKIXXXXXXXXXXXXXXXGLQRELDGERERREKAEGDVAALNRRIQLVE 235
MAG+ ++EAVKRKI LQRE++GER RE+AE +VA+LNRRIQLVE
Sbjct: 1 MAGITTIEAVKRKIQVLQQQADDAEERAERLQREVEGERRAREQAEAEVASLNRRIQLVE 60
Query: 236 EELDRAQERXXXXXXXXXXXXXXXXXXXRGMKVIENRAMKDEEKMEIQ------------ 379
EELDRAQER RGMKVIENRA+KDEEKME+Q
Sbjct: 61 EELDRAQERLATALQKLEEAEKAADESERGMKVIENRALKDEEKMELQEIQLKEAKHIAE 120
Query: 380 ------------------------ERAEVSELKCGDLEEELKNVTNNLXXXXXXXXXXXX 487
ERAE++E KC +LEEELKNVTNNL
Sbjct: 121 EADRKYEEVARKLVIIEGDLERTEERAELAESKCSELEEELKNVTNNLKSLEAQAEKYSQ 180
Query: 488 XXXXXXXXXXXXSDKLKXXXXXXXXXXXXXXKLEKTIDDLEEKLAQAKEENVGLHQTLDQ 667
+DKLK KLEKTIDDLEE+L E N L L
Sbjct: 181 KEDKYEEEIKILTDKLKEAETRAEFAERSVAKLEKTIDDLEERLYSQLERNRLLSNELKL 240
Query: 668 TLNEL 682
TL++L
Sbjct: 241 TLHDL 245
>ref|NP_001018008.1| tropomyosin alpha-1 chain isoform 6 [Homo sapiens].
Length = 245
Score = 146 bits (369), Expect = 3e-35
Identities = 104/244 (42%), Positives = 115/244 (47%), Gaps = 36/244 (14%)
Frame = +2
Query: 56 MAGLNSLEAVKRKIXXXXXXXXXXXXXXXGLQRELDGERERREKAEGDVAALNRRIQLVE 235
MAG +SLEAV+RKI LQRELD ER+ RE AE DVA+LNRRIQLVE
Sbjct: 1 MAGSSSLEAVRRKIRSLQEQADAAEERAGTLQRELDHERKLRETAEADVASLNRRIQLVE 60
Query: 236 EELDRAQERXXXXXXXXXXXXXXXXXXXRGMKVIENRAMKDEEKMEIQ------------ 379
EELDRAQER RGMKVIE+RA KDEEKMEIQ
Sbjct: 61 EELDRAQERLATALQKLEEAEKAADESERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAE 120
Query: 380 ------------------------ERAEVSELKCGDLEEELKNVTNNLXXXXXXXXXXXX 487
ERAE+SE KC +LEEELK VTNNL
Sbjct: 121 DADRKYEEVARKLVIIESDLERAEERAELSEGKCAELEEELKTVTNNLKSLEAQAEKYSQ 180
Query: 488 XXXXXXXXXXXXSDKLKXXXXXXXXXXXXXXKLEKTIDDLEEKLAQAKEENVGLHQTLDQ 667
SDKLK KLEK+IDDLE++L Q E+N L L
Sbjct: 181 KEDRYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEDQLYQQLEQNRRLTNELKL 240
Query: 668 TLNE 679
LNE
Sbjct: 241 ALNE 244
>ref|NP_705935.1| tropomyosin alpha-3 chain isoform 2 [Homo sapiens].
Length = 248
Score = 142 bits (359), Expect = 4e-34
Identities = 94/246 (38%), Positives = 120/246 (48%), Gaps = 36/246 (14%)
Frame = +2
Query: 56 MAGLNSLEAVKRKIXXXXXXXXXXXXXXXGLQRELDGERERREKAEGDVAALNRRIQLVE 235
MAG+ ++EAVKRKI LQRE++GER RE+AE +VA+LNRRIQLVE
Sbjct: 1 MAGITTIEAVKRKIQVLQQQADDAEERAERLQREVEGERRAREQAEAEVASLNRRIQLVE 60
Query: 236 EELDRAQERXXXXXXXXXXXXXXXXXXXRGMKVIENRAMKDEEKMEIQ------------ 379
EELDRAQER RGMKVIENRA+KDEEKME+Q
Sbjct: 61 EELDRAQERLATALQKLEEAEKAADESERGMKVIENRALKDEEKMELQEIQLKEAKHIAE 120
Query: 380 ------------------------ERAEVSELKCGDLEEELKNVTNNLXXXXXXXXXXXX 487
ERAE++E +C +++E+++ + NL
Sbjct: 121 EADRKYEEVARKLVIIEGDLERTEERAELAESRCREMDEQIRLMDQNLKCLSAAEEKYSQ 180
Query: 488 XXXXXXXXXXXXSDKLKXXXXXXXXXXXXXXKLEKTIDDLEEKLAQAKEENVGLHQTLDQ 667
+DKLK KLEKTIDDLE+KL KEE++ + LDQ
Sbjct: 181 KEDKYEEEIKILTDKLKEAETRAEFAERSVAKLEKTIDDLEDKLKCTKEEHLCTQRMLDQ 240
Query: 668 TLNELN 685
TL +LN
Sbjct: 241 TLLDLN 246
>ref|NP_001018007.1| tropomyosin alpha-1 chain isoform 2 [Homo sapiens].
Length = 284
Score = 141 bits (356), Expect = 8e-34
Identities = 94/207 (45%), Positives = 102/207 (49%), Gaps = 36/207 (17%)
Frame = +2
Query: 173 ERREKAEGDVAALNRRIQLVEEELDRAQERXXXXXXXXXXXXXXXXXXXRGMKVIENRAM 352
E KAE DVA+LNRRIQLVEEELDRAQER RGMKVIE+RA
Sbjct: 76 EAAAKAEADVASLNRRIQLVEEELDRAQERLATALQKLEEAEKAADESERGMKVIESRAQ 135
Query: 353 KDEEKMEIQE------------------------------------RAEVSELKCGDLEE 424
KDEEKMEIQE RAE+SE KC +LEE
Sbjct: 136 KDEEKMEIQEIQLKEAKHIAEDADRKYEEVARKLVIIESDLERAEERAELSEGKCAELEE 195
Query: 425 ELKNVTNNLXXXXXXXXXXXXXXXXXXXXXXXXSDKLKXXXXXXXXXXXXXXKLEKTIDD 604
ELK VTNNL SDKLK KLEK+IDD
Sbjct: 196 ELKTVTNNLKSLEAQAEKYSQKEDRYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDD 255
Query: 605 LEEKLAQAKEENVGLHQTLDQTLNELN 685
LEEK+A AKEEN+ +HQ LDQTL ELN
Sbjct: 256 LEEKVAHAKEENLSMHQMLDQTLLELN 282
>ref|NP_001018004.1| tropomyosin alpha-1 chain isoform 3 [Homo sapiens].
Length = 284
Score = 141 bits (356), Expect = 8e-34
Identities = 94/215 (43%), Positives = 106/215 (49%), Gaps = 36/215 (16%)
Frame = +2
Query: 149 QRELDGERERREKAEGDVAALNRRIQLVEEELDRAQERXXXXXXXXXXXXXXXXXXXRGM 328
Q +L+ ++ AE DVA+LNRRIQLVEEELDRAQER RGM
Sbjct: 68 QEKLELAEKKATDAEADVASLNRRIQLVEEELDRAQERLATALQKLEEAEKAADESERGM 127
Query: 329 KVIENRAMKDEEKMEIQE------------------------------------RAEVSE 400
KVIE+RA KDEEKMEIQE RAE+SE
Sbjct: 128 KVIESRAQKDEEKMEIQEIQLKEAKHIAEDADRKYEEVARKLVIIESDLERAEERAELSE 187
Query: 401 LKCGDLEEELKNVTNNLXXXXXXXXXXXXXXXXXXXXXXXXSDKLKXXXXXXXXXXXXXX 580
KC +LEEELK VTNNL SDKLK
Sbjct: 188 GKCAELEEELKTVTNNLKSLEAQAEKYSQKEDRYEEEIKVLSDKLKEAETRAEFAERSVT 247
Query: 581 KLEKTIDDLEEKLAQAKEENVGLHQTLDQTLNELN 685
KLEK+IDDLEEK+A AKEEN+ +HQ LDQTL ELN
Sbjct: 248 KLEKSIDDLEEKVAHAKEENLSMHQMLDQTLLELN 282
>ref|NP_001036817.1| tropomyosin alpha-3 chain isoform 3 [Homo sapiens].
Length = 247
Score = 133 bits (335), Expect = 2e-31
Identities = 91/245 (37%), Positives = 115/245 (46%), Gaps = 36/245 (14%)
Frame = +2
Query: 56 MAGLNSLEAVKRKIXXXXXXXXXXXXXXXGLQRELDGERERREKAEGDVAALNRRIQLVE 235
MAG+ ++EAVKRKI LQRE++GER RE+AE +VA+LNRRIQLVE
Sbjct: 1 MAGITTIEAVKRKIQVLQQQADDAEERAERLQREVEGERRAREQAEAEVASLNRRIQLVE 60
Query: 236 EELDRAQERXXXXXXXXXXXXXXXXXXXRGMKVIENRAMKDEEKMEIQ------------ 379
EELDRAQER RGMKVIENRA+KDEEKME+Q
Sbjct: 61 EELDRAQERLATALQKLEEAEKAADESERGMKVIENRALKDEEKMELQEIQLKEAKHIAE 120
Query: 380 ------------------------ERAEVSELKCGDLEEELKNVTNNLXXXXXXXXXXXX 487
ERAE++E +C +++E+++ + NL
Sbjct: 121 EADRKYEEVARKLVIIEGDLERTEERAELAESRCREMDEQIRLMDQNLKCLSAAEEKYSQ 180
Query: 488 XXXXXXXXXXXXSDKLKXXXXXXXXXXXXXXKLEKTIDDLEEKLAQAKEENVGLHQTLDQ 667
+DKLK KLEKTIDDLEE+L E N L L
Sbjct: 181 KEDKYEEEIKILTDKLKEAETRAEFAERSVAKLEKTIDDLEERLYSQLERNRLLSNELKL 240
Query: 668 TLNEL 682
TL++L
Sbjct: 241 TLHDL 245
>ref|NP_998839.1| tropomyosin beta chain isoform 2 [Homo sapiens].
Length = 284
Score = 130 bits (326), Expect = 2e-30
Identities = 89/215 (41%), Positives = 101/215 (46%), Gaps = 36/215 (16%)
Frame = +2
Query: 149 QRELDGERERREKAEGDVAALNRRIQLVEEELDRAQERXXXXXXXXXXXXXXXXXXXRGM 328
Q +L+ ++ AE DVA+LNRRIQLVEEELDRAQER RGM
Sbjct: 68 QEKLEQAEKKATDAEADVASLNRRIQLVEEELDRAQERLATALQKLEEAEKAADESERGM 127
Query: 329 KVIENRAMKDEEKMEIQ------------------------------------ERAEVSE 400
KVIENRAMKDEEKME+Q ERAEV+E
Sbjct: 128 KVIENRAMKDEEKMELQEMQLKEAKHIAEDSDRKYEEVARKLVILEGELERSEERAEVAE 187
Query: 401 LKCGDLEEELKNVTNNLXXXXXXXXXXXXXXXXXXXXXXXXSDKLKXXXXXXXXXXXXXX 580
+ LEEEL+ + L +KLK
Sbjct: 188 SRARQLEEELRTMDQALKSLMASEEEYSTKEDKYEEEIKLLEEKLKEAETRAEFAERSVA 247
Query: 581 KLEKTIDDLEEKLAQAKEENVGLHQTLDQTLNELN 685
KLEKTIDDLEE LA AKEENV +HQTLDQTL ELN
Sbjct: 248 KLEKTIDDLEETLASAKEENVEIHQTLDQTLLELN 282
Database: RefSeq44_HP.fasta
Posted date: Nov 15, 2010 4:36 PM
Number of letters in database: 18,324,212
Number of sequences in database: 33,950
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33950
Number of Hits to DB: 24,637,074
Number of extensions: 515167
Number of successful extensions: 2236
Number of sequences better than 1.0e-05: 16
Number of HSP's gapped: 2191
Number of HSP's successfully gapped: 30
Length of query: 332
Length of database: 18,324,212
Length adjustment: 103
Effective length of query: 229
Effective length of database: 14,827,362
Effective search space: 3395465898
Effective search space used: 3395465898
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel44
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20070806S-063353
(997 letters)
Database: RefSeq44_MP.fasta
29,866 sequences; 15,452,059 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001001491.1| tropomyosin alpha-4 chain [Mus musculus]. 219 3e-57
Alignment gi|NP_001157724.1| tropomyosin alpha-1 chain isoform 6 [Mus mus... 170 2e-42
Alignment gi|NP_001157725.1| tropomyosin alpha-1 chain isoform 7 [Mus mus... 151 7e-37
Alignment gi|NP_001157726.1| tropomyosin alpha-1 chain isoform 8 [Mus mus... 147 2e-35
Alignment gi|NP_001157728.1| tropomyosin alpha-1 chain isoform 10 [Mus mu... 145 5e-35
Alignment gi|NP_001157721.1| tropomyosin alpha-1 chain isoform 2 [Mus mus... 141 7e-34
Alignment gi|NP_077745.2| tropomyosin alpha-1 chain isoform 3 [Mus muscul... 141 7e-34
Alignment gi|NP_001157722.1| tropomyosin alpha-1 chain isoform 4 [Mus mus... 123 3e-28
Alignment gi|NP_033442.2| tropomyosin beta chain [Mus musculus]. 122 3e-28
Alignment gi|NP_001157720.1| tropomyosin alpha-1 chain isoform 1 [Mus mus... 118 6e-27
>ref|NP_001001491.1| tropomyosin alpha-4 chain [Mus musculus].
Length = 248
Score = 219 bits (558), Expect = 3e-57
Identities = 136/248 (54%), Positives = 139/248 (56%), Gaps = 36/248 (14%)
Frame = +2
Query: 56 MAGLNSLEAVKRKIXXXXXXXXXXXXXXXGLQRELDGERERREKAEGDVAALNRRIQLVE 235
MAGLNSLEAVKRKI GLQRELDGERERREKAEGD AALNRRIQL+E
Sbjct: 1 MAGLNSLEAVKRKIQALQQQADDAEDRAQGLQRELDGERERREKAEGDAAALNRRIQLLE 60
Query: 236 EELDRAQERXXXXXXXXXXXXXXXXXXXRGMKVIENRAMKDEEKMEI------------- 376
EELDRAQE+ RGMKVIENRAMKDEEKMEI
Sbjct: 61 EELDRAQEQLATALQNLEEAEKAADESERGMKVIENRAMKDEEKMEILEMQLKEAKHITD 120
Query: 377 -----------------------QERAEVSELKCGDLEEELKNVTNNLXXXXXXXXXXXX 487
+ERAEVSELKCGDLEEELKNVTNNL
Sbjct: 121 EADRKYEEVARKLVILEGELKRAEERAEVSELKCGDLEEELKNVTNNLKSLEAASEKYSE 180
Query: 488 XXXXXXXXXXXXSDKLKXXXXXXXXXXXXXXKLEKTIDDLEEKLAQAKEENVGLHQTLDQ 667
SDKLK KLEKTIDDLEEKLAQAKEENVGLHQTLDQ
Sbjct: 181 KEDKYEEEIKLLSDKLKEAETRAEFAERTVSKLEKTIDDLEEKLAQAKEENVGLHQTLDQ 240
Query: 668 TLNELNCI 691
TLNELNCI
Sbjct: 241 TLNELNCI 248
>ref|NP_001157724.1| tropomyosin alpha-1 chain isoform 6 [Mus musculus].
Length = 248
Score = 170 bits (430), Expect = 2e-42
Identities = 113/246 (45%), Positives = 124/246 (50%), Gaps = 36/246 (14%)
Frame = +2
Query: 56 MAGLNSLEAVKRKIXXXXXXXXXXXXXXXGLQRELDGERERREKAEGDVAALNRRIQLVE 235
MAG +SLEAV+RKI LQRELD ER+ RE AE DVA+LNRRIQLVE
Sbjct: 1 MAGSSSLEAVRRKIRSLQEQADAAEERAGSLQRELDQERKLRETAEADVASLNRRIQLVE 60
Query: 236 EELDRAQERXXXXXXXXXXXXXXXXXXXRGMKVIENRAMKDEEKMEIQ------------ 379
EELDRAQER RGMKVIE+RA KDEEKMEIQ
Sbjct: 61 EELDRAQERLATALQKLEEAEKAADESERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAE 120
Query: 380 ------------------------ERAEVSELKCGDLEEELKNVTNNLXXXXXXXXXXXX 487
ERAE+SE KC +LEEELK VTNNL
Sbjct: 121 DADRKYEEVARKLVIIESDLERAEERAELSEGKCAELEEELKTVTNNLKSLEAQAEKYSQ 180
Query: 488 XXXXXXXXXXXXSDKLKXXXXXXXXXXXXXXKLEKTIDDLEEKLAQAKEENVGLHQTLDQ 667
SDKLK KLEK+IDDLEEK+A AKEEN+ +HQ LDQ
Sbjct: 181 KEDKYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEEKVAHAKEENLSMHQMLDQ 240
Query: 668 TLNELN 685
TL ELN
Sbjct: 241 TLLELN 246
>ref|NP_001157725.1| tropomyosin alpha-1 chain isoform 7 [Mus musculus].
Length = 248
Score = 151 bits (382), Expect = 7e-37
Identities = 105/246 (42%), Positives = 119/246 (48%), Gaps = 36/246 (14%)
Frame = +2
Query: 56 MAGLNSLEAVKRKIXXXXXXXXXXXXXXXGLQRELDGERERREKAEGDVAALNRRIQLVE 235
MAG +SLEAV+RKI LQRELD ER+ RE AE DVA+LNRRIQLVE
Sbjct: 1 MAGSSSLEAVRRKIRSLQEQADAAEERAGSLQRELDQERKLRETAEADVASLNRRIQLVE 60
Query: 236 EELDRAQERXXXXXXXXXXXXXXXXXXXRGMKVIENRAMKDEEKMEIQ------------ 379
EELDRAQER RGMKVIE+RA KDEEKMEIQ
Sbjct: 61 EELDRAQERLATALQKLEEAEKAADESERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAE 120
Query: 380 ------------------------ERAEVSELKCGDLEEELKNVTNNLXXXXXXXXXXXX 487
ERAE+SE + LEE+L+ + L
Sbjct: 121 DADRKYEEVARKLVIIESDLERAEERAELSEGQVRQLEEQLRIMDQTLKALMAAEDKYSQ 180
Query: 488 XXXXXXXXXXXXSDKLKXXXXXXXXXXXXXXKLEKTIDDLEEKLAQAKEENVGLHQTLDQ 667
SDKLK KLEK+IDDLEEK+A AKEEN+ +HQ LDQ
Sbjct: 181 KEDKYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEEKVAHAKEENLSMHQMLDQ 240
Query: 668 TLNELN 685
TL ELN
Sbjct: 241 TLLELN 246
>ref|NP_001157726.1| tropomyosin alpha-1 chain isoform 8 [Mus musculus].
Length = 248
Score = 147 bits (370), Expect = 2e-35
Identities = 102/248 (41%), Positives = 117/248 (47%), Gaps = 36/248 (14%)
Frame = +2
Query: 56 MAGLNSLEAVKRKIXXXXXXXXXXXXXXXGLQRELDGERERREKAEGDVAALNRRIQLVE 235
MAG +SLEAV+RKI LQRELD ER+ RE AE DVA+LNRRIQLVE
Sbjct: 1 MAGSSSLEAVRRKIRSLQEQADAAEERAGSLQRELDQERKLRETAEADVASLNRRIQLVE 60
Query: 236 EELDRAQERXXXXXXXXXXXXXXXXXXXRGMKVIENRAMKDEEKMEIQ------------ 379
EELDRAQER RGMKVIE+RA KDEEKMEIQ
Sbjct: 61 EELDRAQERLATALQKLEEAEKAADESERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAE 120
Query: 380 ------------------------ERAEVSELKCGDLEEELKNVTNNLXXXXXXXXXXXX 487
ERAE+SE KC +LEEELK VTNNL
Sbjct: 121 DADRKYEEVARKLVIIESDLERAEERAELSEGKCAELEEELKTVTNNLKSLEAQAEKYSQ 180
Query: 488 XXXXXXXXXXXXSDKLKXXXXXXXXXXXXXXKLEKTIDDLEEKLAQAKEENVGLHQTLDQ 667
SDKLK KLEK+IDDLE++L K + + + LD
Sbjct: 181 KEDKYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEDELYAQKLKYKAISEELDH 240
Query: 668 TLNELNCI 691
LN++ I
Sbjct: 241 ALNDMTSI 248
>ref|NP_001157728.1| tropomyosin alpha-1 chain isoform 10 [Mus musculus].
Length = 245
Score = 145 bits (366), Expect = 5e-35
Identities = 103/244 (42%), Positives = 114/244 (46%), Gaps = 36/244 (14%)
Frame = +2
Query: 56 MAGLNSLEAVKRKIXXXXXXXXXXXXXXXGLQRELDGERERREKAEGDVAALNRRIQLVE 235
MAG +SLEAV+RKI LQRELD ER+ RE AE DVA+LNRRIQLVE
Sbjct: 1 MAGSSSLEAVRRKIRSLQEQADAAEERAGSLQRELDQERKLRETAEADVASLNRRIQLVE 60
Query: 236 EELDRAQERXXXXXXXXXXXXXXXXXXXRGMKVIENRAMKDEEKMEIQ------------ 379
EELDRAQER RGMKVIE+RA KDEEKMEIQ
Sbjct: 61 EELDRAQERLATALQKLEEAEKAADESERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAE 120
Query: 380 ------------------------ERAEVSELKCGDLEEELKNVTNNLXXXXXXXXXXXX 487
ERAE+SE KC +LEEELK VTNNL
Sbjct: 121 DADRKYEEVARKLVIIESDLERAEERAELSEGKCAELEEELKTVTNNLKSLEAQAEKYSQ 180
Query: 488 XXXXXXXXXXXXSDKLKXXXXXXXXXXXXXXKLEKTIDDLEEKLAQAKEENVGLHQTLDQ 667
SDKLK KLEK+IDDLE++L E+N L L
Sbjct: 181 KEDKYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEDQLYHQLEQNRRLTNELKL 240
Query: 668 TLNE 679
LNE
Sbjct: 241 ALNE 244
>ref|NP_001157721.1| tropomyosin alpha-1 chain isoform 2 [Mus musculus].
Length = 284
Score = 141 bits (356), Expect = 7e-34
Identities = 94/207 (45%), Positives = 102/207 (49%), Gaps = 36/207 (17%)
Frame = +2
Query: 173 ERREKAEGDVAALNRRIQLVEEELDRAQERXXXXXXXXXXXXXXXXXXXRGMKVIENRAM 352
E KAE DVA+LNRRIQLVEEELDRAQER RGMKVIE+RA
Sbjct: 76 ETAAKAEADVASLNRRIQLVEEELDRAQERLATALQKLEEAEKAADESERGMKVIESRAQ 135
Query: 353 KDEEKMEIQE------------------------------------RAEVSELKCGDLEE 424
KDEEKMEIQE RAE+SE KC +LEE
Sbjct: 136 KDEEKMEIQEIQLKEAKHIAEDADRKYEEVARKLVIIESDLERAEERAELSEGKCAELEE 195
Query: 425 ELKNVTNNLXXXXXXXXXXXXXXXXXXXXXXXXSDKLKXXXXXXXXXXXXXXKLEKTIDD 604
ELK VTNNL SDKLK KLEK+IDD
Sbjct: 196 ELKTVTNNLKSLEAQAEKYSQKEDKYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDD 255
Query: 605 LEEKLAQAKEENVGLHQTLDQTLNELN 685
LEEK+A AKEEN+ +HQ LDQTL ELN
Sbjct: 256 LEEKVAHAKEENLSMHQMLDQTLLELN 282
>ref|NP_077745.2| tropomyosin alpha-1 chain isoform 3 [Mus musculus].
Length = 284
Score = 141 bits (356), Expect = 7e-34
Identities = 94/215 (43%), Positives = 106/215 (49%), Gaps = 36/215 (16%)
Frame = +2
Query: 149 QRELDGERERREKAEGDVAALNRRIQLVEEELDRAQERXXXXXXXXXXXXXXXXXXXRGM 328
Q +L+ ++ AE DVA+LNRRIQLVEEELDRAQER RGM
Sbjct: 68 QEKLELAEKKATDAEADVASLNRRIQLVEEELDRAQERLATALQKLEEAEKAADESERGM 127
Query: 329 KVIENRAMKDEEKMEIQE------------------------------------RAEVSE 400
KVIE+RA KDEEKMEIQE RAE+SE
Sbjct: 128 KVIESRAQKDEEKMEIQEIQLKEAKHIAEDADRKYEEVARKLVIIESDLERAEERAELSE 187
Query: 401 LKCGDLEEELKNVTNNLXXXXXXXXXXXXXXXXXXXXXXXXSDKLKXXXXXXXXXXXXXX 580
KC +LEEELK VTNNL SDKLK
Sbjct: 188 GKCAELEEELKTVTNNLKSLEAQAEKYSQKEDKYEEEIKVLSDKLKEAETRAEFAERSVT 247
Query: 581 KLEKTIDDLEEKLAQAKEENVGLHQTLDQTLNELN 685
KLEK+IDDLEEK+A AKEEN+ +HQ LDQTL ELN
Sbjct: 248 KLEKSIDDLEEKVAHAKEENLSMHQMLDQTLLELN 282
>ref|NP_001157722.1| tropomyosin alpha-1 chain isoform 4 [Mus musculus].
Length = 284
Score = 123 bits (308), Expect = 3e-28
Identities = 86/215 (40%), Positives = 101/215 (46%), Gaps = 36/215 (16%)
Frame = +2
Query: 149 QRELDGERERREKAEGDVAALNRRIQLVEEELDRAQERXXXXXXXXXXXXXXXXXXXRGM 328
Q +L+ ++ AE DVA+LNRRIQLVEEELDRAQER RGM
Sbjct: 68 QEKLELAEKKATDAEADVASLNRRIQLVEEELDRAQERLATALQKLEEAEKAADESERGM 127
Query: 329 KVIENRAMKDEEKMEIQ------------------------------------ERAEVSE 400
KVIE+RA KDEEKMEIQ ERAE+SE
Sbjct: 128 KVIESRAQKDEEKMEIQEIQLKEAKHIAEDADRKYEEVARKLVIIESDLERAEERAELSE 187
Query: 401 LKCGDLEEELKNVTNNLXXXXXXXXXXXXXXXXXXXXXXXXSDKLKXXXXXXXXXXXXXX 580
+ LEE+L+ + L SDKLK
Sbjct: 188 GQVRQLEEQLRIMDQTLKALMAAEDKYSQKEDKYEEEIKVLSDKLKEAETRAEFAERSVT 247
Query: 581 KLEKTIDDLEEKLAQAKEENVGLHQTLDQTLNELN 685
KLEK+IDDLEEK+A AKEEN+ +HQ LDQTL ELN
Sbjct: 248 KLEKSIDDLEEKVAHAKEENLSMHQMLDQTLLELN 282
>ref|NP_033442.2| tropomyosin beta chain [Mus musculus].
Length = 284
Score = 122 bits (307), Expect = 3e-28
Identities = 83/217 (38%), Positives = 100/217 (46%), Gaps = 36/217 (16%)
Frame = +2
Query: 149 QRELDGERERREKAEGDVAALNRRIQLVEEELDRAQERXXXXXXXXXXXXXXXXXXXRGM 328
Q +L+ ++ AE DVA+LNRRIQLVEEELDRAQER RGM
Sbjct: 68 QEKLEQAEKKATDAEADVASLNRRIQLVEEELDRAQERLATALQKLEEAEKAADESERGM 127
Query: 329 KVIENRAMKDEEKMEIQ------------------------------------ERAEVSE 400
KVIENRAMKDEEKME+Q ERAEV+E
Sbjct: 128 KVIENRAMKDEEKMELQEMQLKEAKHIAEDSDRKYEEVARKLVILEGELERSEERAEVAE 187
Query: 401 LKCGDLEEELKNVTNNLXXXXXXXXXXXXXXXXXXXXXXXXSDKLKXXXXXXXXXXXXXX 580
KCGDLEEELK VTNNL +KLK
Sbjct: 188 SKCGDLEEELKIVTNNLKSLEAQADKYSTKEDKYEEEIKLLEEKLKEAETRAEFAERSVA 247
Query: 581 KLEKTIDDLEEKLAQAKEENVGLHQTLDQTLNELNCI 691
KLEKTIDDLE+++ K + + + LD LN++ +
Sbjct: 248 KLEKTIDDLEDEVYAQKMKYKAISEELDNALNDITSL 284
>ref|NP_001157720.1| tropomyosin alpha-1 chain isoform 1 [Mus musculus].
Length = 284
Score = 118 bits (296), Expect = 6e-27
Identities = 83/217 (38%), Positives = 99/217 (45%), Gaps = 36/217 (16%)
Frame = +2
Query: 149 QRELDGERERREKAEGDVAALNRRIQLVEEELDRAQERXXXXXXXXXXXXXXXXXXXRGM 328
Q +L+ ++ AE DVA+LNRRIQLVEEELDRAQER RGM
Sbjct: 68 QEKLELAEKKATDAEADVASLNRRIQLVEEELDRAQERLATALQKLEEAEKAADESERGM 127
Query: 329 KVIENRAMKDEEKMEIQ------------------------------------ERAEVSE 400
KVIE+RA KDEEKMEIQ ERAE+SE
Sbjct: 128 KVIESRAQKDEEKMEIQEIQLKEAKHIAEDADRKYEEVARKLVIIESDLERAEERAELSE 187
Query: 401 LKCGDLEEELKNVTNNLXXXXXXXXXXXXXXXXXXXXXXXXSDKLKXXXXXXXXXXXXXX 580
KC +LEEELK VTNNL SDKLK
Sbjct: 188 GKCAELEEELKTVTNNLKSLEAQAEKYSQKEDKYEEEIKVLSDKLKEAETRAEFAERSVT 247
Query: 581 KLEKTIDDLEEKLAQAKEENVGLHQTLDQTLNELNCI 691
KLEK+IDDLE++L K + + + LD LN++ I
Sbjct: 248 KLEKSIDDLEDELYAQKLKYKAISEELDHALNDMTSI 284
Database: RefSeq44_MP.fasta
Posted date: Nov 15, 2010 4:36 PM
Number of letters in database: 15,452,059
Number of sequences in database: 29,866
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 29866
Number of Hits to DB: 20,697,698
Number of extensions: 427553
Number of successful extensions: 1730
Number of sequences better than 1.0e-05: 13
Number of HSP's gapped: 1695
Number of HSP's successfully gapped: 23
Length of query: 332
Length of database: 15,452,059
Length adjustment: 102
Effective length of query: 230
Effective length of database: 12,405,727
Effective search space: 2853317210
Effective search space used: 2853317210
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel44
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20070806S-063353
(997 letters)
Database: RefSeq44_SP.fasta
20,576 sequences; 9,542,844 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_999500.1| tropomyosin alpha-4 chain [Sus scrofa]. 224 4e-59
Alignment gi|NP_001001632.1| tropomyosin alpha-3 chain [Sus scrofa]. 142 2e-34
Alignment gi|NP_001123419.1| tropomyosin beta chain [Sus scrofa]. 127 6e-30
Alignment gi|NP_001090952.1| tropomyosin alpha-1 chain [Sus scrofa]. 118 4e-27
>ref|NP_999500.1| tropomyosin alpha-4 chain [Sus scrofa].
Length = 248
Score = 224 bits (572), Expect = 4e-59
Identities = 140/248 (56%), Positives = 140/248 (56%), Gaps = 36/248 (14%)
Frame = +2
Query: 56 MAGLNSLEAVKRKIXXXXXXXXXXXXXXXGLQRELDGERERREKAEGDVAALNRRIQLVE 235
MAGLNSLEAVKRKI GLQRELDGERERREKAEGDVAALNRRIQLVE
Sbjct: 1 MAGLNSLEAVKRKIQALQQQADEAEDRAQGLQRELDGERERREKAEGDVAALNRRIQLVE 60
Query: 236 EELDRAQERXXXXXXXXXXXXXXXXXXXRGMKVIENRAMKDEEKMEIQ------------ 379
EELDRAQER RGMKVIENRAMKDEEKMEIQ
Sbjct: 61 EELDRAQERLATALQKLEEAEKAADESERGMKVIENRAMKDEEKMEIQEMQLKEAKHIAE 120
Query: 380 ------------------------ERAEVSELKCGDLEEELKNVTNNLXXXXXXXXXXXX 487
ERAEVSELKCGDLEEELKNVTNNL
Sbjct: 121 EADRKYEEVARKLVILEGELERAEERAEVSELKCGDLEEELKNVTNNLKSLEAASEKYSE 180
Query: 488 XXXXXXXXXXXXSDKLKXXXXXXXXXXXXXXKLEKTIDDLEEKLAQAKEENVGLHQTLDQ 667
SDKLK KLEKTIDDLEEKLAQAKEENVGLHQTLDQ
Sbjct: 181 KEDKYEEEIKLLSDKLKEAETRAEFAERTVAKLEKTIDDLEEKLAQAKEENVGLHQTLDQ 240
Query: 668 TLNELNCI 691
TLNELNCI
Sbjct: 241 TLNELNCI 248
>ref|NP_001001632.1| tropomyosin alpha-3 chain [Sus scrofa].
Length = 248
Score = 142 bits (359), Expect = 2e-34
Identities = 94/246 (38%), Positives = 120/246 (48%), Gaps = 36/246 (14%)
Frame = +2
Query: 56 MAGLNSLEAVKRKIXXXXXXXXXXXXXXXGLQRELDGERERREKAEGDVAALNRRIQLVE 235
MAG+ ++EAVKRKI LQRE++GER RE+AE +VA+LNRRIQLVE
Sbjct: 1 MAGITTIEAVKRKIQVLQQQADDAEERAERLQREVEGERRAREQAEAEVASLNRRIQLVE 60
Query: 236 EELDRAQERXXXXXXXXXXXXXXXXXXXRGMKVIENRAMKDEEKMEIQ------------ 379
EELDRAQER RGMKVIENRA+KDEEKME+Q
Sbjct: 61 EELDRAQERLATALQKLEEAEKAADESERGMKVIENRALKDEEKMELQEIQLKEAKHIAE 120
Query: 380 ------------------------ERAEVSELKCGDLEEELKNVTNNLXXXXXXXXXXXX 487
ERAE++E +C +++E+++ + NL
Sbjct: 121 EADRKYEEVARKLVIIEGDLERTEERAELAESRCREMDEQIRLMDQNLKCLSAAEEKYSQ 180
Query: 488 XXXXXXXXXXXXSDKLKXXXXXXXXXXXXXXKLEKTIDDLEEKLAQAKEENVGLHQTLDQ 667
+DKLK KLEKTIDDLE+KL KEE++ + LDQ
Sbjct: 181 KEDKYEEEIKILTDKLKEAETRAEFAERSVAKLEKTIDDLEDKLKCTKEEHLCTQRMLDQ 240
Query: 668 TLNELN 685
TL +LN
Sbjct: 241 TLLDLN 246
>ref|NP_001123419.1| tropomyosin beta chain [Sus scrofa].
Length = 287
Score = 127 bits (320), Expect = 6e-30
Identities = 88/218 (40%), Positives = 101/218 (46%), Gaps = 39/218 (17%)
Frame = +2
Query: 149 QRELDGERERREKAEGDVAALNRRIQLVEEELDRAQERXXXXXXXXXXXXXXXXXXXRGM 328
Q +L+ ++ AE DVA+LNRRIQLVEEELDRAQER RG+
Sbjct: 68 QEKLEQAEKKATDAEADVASLNRRIQLVEEELDRAQERLATALQKLEEAEKAADESERGL 127
Query: 329 KVIENRAMKDEEKMEIQ---------------------------------------ERAE 391
KVIENRAMKDEEKME+Q ERAE
Sbjct: 128 KVIENRAMKDEEKMELQEMQEMQLKEAKHIAEDSDRKYEEVARKLVILEGELERSEERAE 187
Query: 392 VSELKCGDLEEELKNVTNNLXXXXXXXXXXXXXXXXXXXXXXXXSDKLKXXXXXXXXXXX 571
V+E + LEEEL+ + L +KLK
Sbjct: 188 VAESRARQLEEELRTMDQALKSLMASEEEYSTKEDKYEEEIKLLEEKLKEAETRAEFAER 247
Query: 572 XXXKLEKTIDDLEEKLAQAKEENVGLHQTLDQTLNELN 685
KLEKTIDDLEE LA AKEENV +HQTLDQTL ELN
Sbjct: 248 SVAKLEKTIDDLEETLASAKEENVEIHQTLDQTLLELN 285
>ref|NP_001090952.1| tropomyosin alpha-1 chain [Sus scrofa].
Length = 284
Score = 118 bits (296), Expect = 4e-27
Identities = 83/217 (38%), Positives = 99/217 (45%), Gaps = 36/217 (16%)
Frame = +2
Query: 149 QRELDGERERREKAEGDVAALNRRIQLVEEELDRAQERXXXXXXXXXXXXXXXXXXXRGM 328
Q +L+ ++ AE DVA+LNRRIQLVEEELDRAQER RGM
Sbjct: 68 QEKLELAEKKATDAEADVASLNRRIQLVEEELDRAQERLATALQKLEEAEKAADESERGM 127
Query: 329 KVIENRAMKDEEKMEIQ------------------------------------ERAEVSE 400
KVIE+RA KDEEKMEIQ ERAE+SE
Sbjct: 128 KVIESRAQKDEEKMEIQEIQLKEAKHIAEDADRKYEEVARKLVIIESDLERAEERAELSE 187
Query: 401 LKCGDLEEELKNVTNNLXXXXXXXXXXXXXXXXXXXXXXXXSDKLKXXXXXXXXXXXXXX 580
KC +LEEELK VTNNL SDKLK
Sbjct: 188 GKCAELEEELKTVTNNLKSLEAQAEKYSQKEDKYEEEIKVLSDKLKEAETRAEFAERSVT 247
Query: 581 KLEKTIDDLEEKLAQAKEENVGLHQTLDQTLNELNCI 691
KLEK+IDDLE++L K + + + LD LN++ I
Sbjct: 248 KLEKSIDDLEDELYAQKLKYKAISEELDHALNDMTSI 284
Database: RefSeq44_SP.fasta
Posted date: Nov 15, 2010 4:36 PM
Number of letters in database: 9,542,844
Number of sequences in database: 20,576
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 20576
Number of Hits to DB: 12,921,010
Number of extensions: 271215
Number of successful extensions: 1085
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 1065
Number of HSP's successfully gapped: 7
Length of query: 332
Length of database: 9,542,844
Length adjustment: 98
Effective length of query: 234
Effective length of database: 7,526,396
Effective search space: 1761176664
Effective search space used: 1761176664
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)