Search to RefSeqBP_Rel44
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20070806S-071818
(572 letters)
Database: RefSeq44_BP.fasta
33,615 sequences; 18,071,151 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001071303.1| cathepsin Z precursor [Bos taurus]. 249 9e-67
Alignment gi|NP_001028789.1| dipeptidyl peptidase 1 [Bos taurus]. 61 7e-10
>ref|NP_001071303.1| cathepsin Z precursor [Bos taurus].
Length = 304
Score = 249 bits (637), Expect = 9e-67
Identities = 114/147 (77%), Positives = 124/147 (84%)
Frame = +3
Query: 132 HFRPGCCCYRPLRGDLRTQLGHRTYPRPHEYLSPSDLPWSWDWRNMNGVNYASVTRNQHI 311
HFRPG CYRPLRGD TQLG RTYPRPHEYLSPSDLP SWDWRN+NGVNYASVTRNQHI
Sbjct: 27 HFRPGRGCYRPLRGDRLTQLGRRTYPRPHEYLSPSDLPKSWDWRNVNGVNYASVTRNQHI 86
Query: 312 PQYCCSCWAHGSSCAMADRLYIQRKGAWPSTLLSVLHVIDCGNAGSCDGGDDLPVRAYAL 491
PQYC SCWAHGS+ AMADR+ I+RKGAWPSTLLSV HVIDCG+AGSC+GG+DLPV YA
Sbjct: 87 PQYCGSCWAHGSTSAMADRINIKRKGAWPSTLLSVQHVIDCGDAGSCEGGNDLPVWEYAH 146
Query: 492 RLGLSEETCLYFLLHDQVCDLFNPCGT 572
R G+ +ETC + DQ CD FN CGT
Sbjct: 147 RHGIPDETCNNYQAKDQECDKFNQCGT 173
>ref|NP_001028789.1| dipeptidyl peptidase 1 [Bos taurus].
Length = 463
Score = 60.8 bits (146), Expect = 7e-10
Identities = 40/111 (36%), Positives = 53/111 (47%), Gaps = 2/111 (1%)
Frame = +3
Query: 240 LPWSWDWRNMNGVNYASVTRNQHIPQYCCSCWAHGSSCAMADRLYIQRKGAWPSTLLSVL 419
LP SWDWRN++G+N+ + RNQ C SC++ S M R+ I + +LS
Sbjct: 231 LPTSWDWRNVHGINFVTPVRNQ---GSCGSCYSFASMGMMEARIRILTNNT-QTPILSPQ 286
Query: 420 HVIDCGN-AGSCDGG-DDLPVRAYALRLGLSEETCLYFLLHDQVCDLFNPC 566
V+ C A C+GG L YA GL EE C + D C L C
Sbjct: 287 EVVSCSQYAQGCEGGFPYLIAGKYAQDFGLVEEDCFPYTGTDSPCRLKEGC 337
Database: RefSeq44_BP.fasta
Posted date: Nov 15, 2010 4:36 PM
Number of letters in database: 18,071,151
Number of sequences in database: 33,615
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33615
Number of Hits to DB: 17,722,360
Number of extensions: 475168
Number of successful extensions: 1591
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 1589
Number of HSP's successfully gapped: 2
Length of query: 190
Length of database: 18,071,151
Length adjustment: 97
Effective length of query: 93
Effective length of database: 14,810,496
Effective search space: 1377376128
Effective search space used: 1377376128
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)
Search to RefSeqCP_Rel44
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20070806S-071818
(572 letters)
Database: RefSeq44_CP.fasta
33,359 sequences; 18,921,627 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_854795.1| PREDICTED: similar to Cathepsin Z precursor (Ca... 210 6e-55
Alignment gi|NP_001182763.1| dipeptidyl peptidase 1 [Canis lupus familiar... 69 2e-12
Alignment gi|XP_535784.2| PREDICTED: similar to Dipeptidyl-peptidase I pr... 65 4e-11
>ref|XP_854795.1| PREDICTED: similar to Cathepsin Z precursor (Cathepsin X)
(Cathepsin P) [Canis familiaris].
Length = 375
Score = 210 bits (535), Expect = 6e-55
Identities = 98/142 (69%), Positives = 111/142 (78%), Gaps = 7/142 (4%)
Frame = +3
Query: 168 RGDLRTQLGH-------RTYPRPHEYLSPSDLPWSWDWRNMNGVNYASVTRNQHIPQYCC 326
R +LR L H RTYPRPHEYLSPSDLP SWDWRN+NGVNYAS TRNQHIPQYC
Sbjct: 103 RRELRRPLEHSPAWWPRRTYPRPHEYLSPSDLPKSWDWRNVNGVNYASATRNQHIPQYCG 162
Query: 327 SCWAHGSSCAMADRLYIQRKGAWPSTLLSVLHVIDCGNAGSCDGGDDLPVRAYALRLGLS 506
SCWAHGS+ AMADR+ I+RKGAWPSTLLSV HV+DC NAGSC+GG+DLPV +YA G+
Sbjct: 163 SCWAHGSTSAMADRINIKRKGAWPSTLLSVQHVLDCANAGSCEGGNDLPVWSYAHEHGIP 222
Query: 507 EETCLYFLLHDQVCDLFNPCGT 572
+ETC + DQ C+ FN CGT
Sbjct: 223 DETCNNYQAKDQECNKFNQCGT 244
>ref|NP_001182763.1| dipeptidyl peptidase 1 [Canis lupus familiaris].
Length = 459
Score = 69.3 bits (168), Expect = 2e-12
Identities = 48/136 (35%), Positives = 64/136 (47%), Gaps = 11/136 (8%)
Frame = +3
Query: 174 DLRTQLGHRTYPRP---------HEYLSPSDLPWSWDWRNMNGVNYASVTRNQHIPQYCC 326
D+ T++G R PRP HE +S LP SWDWRN+ G N+ S RNQ C
Sbjct: 199 DMMTRVGGRKIPRPKPTPLTAEIHEEISR--LPTSWDWRNVRGTNFVSPVRNQ---ASCG 253
Query: 327 SCWAHGSSCAMADRLYIQRKGAWPSTLLSVLHVIDCGN-AGSCDGG-DDLPVRAYALRLG 500
SC+A S+ + R+ I + +LS ++ C A C+GG L YA G
Sbjct: 254 SCYAFASTAMLEARIRILTNNT-QTPILSPQEIVSCSQYAQGCEGGFPYLIAGKYAQDFG 312
Query: 501 LSEETCLYFLLHDQVC 548
L EE C + D C
Sbjct: 313 LVEEACFPYAGSDSPC 328
>ref|XP_535784.2| PREDICTED: similar to Dipeptidyl-peptidase I precursor (DPP-I)
(DPPI) (Cathepsin C) (Cathepsin J) (Dipeptidyl
transferase), partial [Canis familiaris].
Length = 481
Score = 65.1 bits (157), Expect = 4e-11
Identities = 46/136 (33%), Positives = 62/136 (45%), Gaps = 11/136 (8%)
Frame = +3
Query: 174 DLRTQLGHRTYPRP---------HEYLSPSDLPWSWDWRNMNGVNYASVTRNQHIPQYCC 326
D+ + G R PRP HE +S LP SWDWRN+ G N+ S RNQ C
Sbjct: 221 DMMRRAGGRKIPRPKPTPLTAEIHEEISR--LPTSWDWRNVRGTNFVSPVRNQ---ASCG 275
Query: 327 SCWAHGSSCAMADRLYIQRKGAWPSTLLSVLHVIDCGN-AGSCDGG-DDLPVRAYALRLG 500
SC+A S+ + R+ I + +LS ++ C A C+GG L YA G
Sbjct: 276 SCYAFASTVMLEARIRILTNNT-QTPILSPQEIVSCSQYAQGCEGGFPYLIAGKYAQDFG 334
Query: 501 LSEETCLYFLLHDQVC 548
L +E C + D C
Sbjct: 335 LVDEACFSYAGSDSPC 350
Database: RefSeq44_CP.fasta
Posted date: Nov 15, 2010 4:36 PM
Number of letters in database: 18,921,627
Number of sequences in database: 33,359
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33359
Number of Hits to DB: 17,721,232
Number of extensions: 420157
Number of successful extensions: 1643
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 1641
Number of HSP's successfully gapped: 3
Length of query: 190
Length of database: 18,921,627
Length adjustment: 97
Effective length of query: 93
Effective length of database: 15,685,804
Effective search space: 1458779772
Effective search space used: 1458779772
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)
Search to RefSeqHP_Rel44
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20070806S-071818
(572 letters)
Database: RefSeq44_HP.fasta
33,950 sequences; 18,324,212 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001327.2| cathepsin Z preproprotein [Homo sapiens]. 226 1e-59
Alignment gi|NP_001805.3| dipeptidyl peptidase 1 isoform a preproprotein ... 62 3e-10
>ref|NP_001327.2| cathepsin Z preproprotein [Homo sapiens].
Length = 303
Score = 226 bits (575), Expect = 1e-59
Identities = 103/147 (70%), Positives = 118/147 (80%)
Frame = +3
Query: 132 HFRPGCCCYRPLRGDLRTQLGHRTYPRPHEYLSPSDLPWSWDWRNMNGVNYASVTRNQHI 311
+FR G CYRPLRGD LG TYPRPHEYLSP+DLP SWDWRN++GVNYAS+TRNQHI
Sbjct: 26 YFRRGQTCYRPLRGDGLAPLGRSTYPRPHEYLSPADLPKSWDWRNVDGVNYASITRNQHI 85
Query: 312 PQYCCSCWAHGSSCAMADRLYIQRKGAWPSTLLSVLHVIDCGNAGSCDGGDDLPVRAYAL 491
PQYC SCWAH S+ AMADR+ I+RKGAWPSTLLSV +VIDCGNAGSC+GG+DL V YA
Sbjct: 86 PQYCGSCWAHASTSAMADRINIKRKGAWPSTLLSVQNVIDCGNAGSCEGGNDLSVWDYAH 145
Query: 492 RLGLSEETCLYFLLHDQVCDLFNPCGT 572
+ G+ +ETC + DQ CD FN CGT
Sbjct: 146 QHGIPDETCNNYQAKDQECDKFNQCGT 172
>ref|NP_001805.3| dipeptidyl peptidase 1 isoform a preproprotein [Homo sapiens].
Length = 463
Score = 62.4 bits (150), Expect = 3e-10
Identities = 46/140 (32%), Positives = 64/140 (45%), Gaps = 10/140 (7%)
Frame = +3
Query: 177 LRTQLGH-RTYPRPHEYLSPSD-------LPWSWDWRNMNGVNYASVTRNQHIPQYCCSC 332
+R GH R PRP ++ LP SWDWRN++G+N+ S RNQ C SC
Sbjct: 202 IRRSGGHSRKIPRPKPAPLTAEIQQKILHLPTSWDWRNVHGINFVSPVRNQ---ASCGSC 258
Query: 333 WAHGSSCAMADRLYIQRKGAWPSTLLSVLHVIDCGN-AGSCDGG-DDLPVRAYALRLGLS 506
++ S + R+ I + + +LS V+ C A C+GG L YA GL
Sbjct: 259 YSFASMGMLEARIRILTNNS-QTPILSPQEVVSCSQYAQGCEGGFPYLIAGKYAQDFGLV 317
Query: 507 EETCLYFLLHDQVCDLFNPC 566
EE C + D C + C
Sbjct: 318 EEACFPYTGTDSPCKMKEDC 337
Database: RefSeq44_HP.fasta
Posted date: Nov 15, 2010 4:36 PM
Number of letters in database: 18,324,212
Number of sequences in database: 33,950
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33950
Number of Hits to DB: 17,515,630
Number of extensions: 415405
Number of successful extensions: 1548
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 1548
Number of HSP's successfully gapped: 2
Length of query: 190
Length of database: 18,324,212
Length adjustment: 97
Effective length of query: 93
Effective length of database: 15,031,062
Effective search space: 1397888766
Effective search space used: 1397888766
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)
Search to RefSeqMP_Rel44
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20070806S-071818
(572 letters)
Database: RefSeq44_MP.fasta
29,866 sequences; 15,452,059 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_071720.1| cathepsin Z preproprotein [Mus musculus]. 231 4e-61
Alignment gi|NP_034112.3| dipeptidyl peptidase 1 preproprotein [Mus muscu... 64 8e-11
>ref|NP_071720.1| cathepsin Z preproprotein [Mus musculus].
Length = 306
Score = 231 bits (588), Expect = 4e-61
Identities = 104/147 (70%), Positives = 119/147 (80%)
Frame = +3
Query: 132 HFRPGCCCYRPLRGDLRTQLGHRTYPRPHEYLSPSDLPWSWDWRNMNGVNYASVTRNQHI 311
+FR G CY P+RGD LG RTYPRPHEYLSP+DLP +WDWRN+NGVNYASVTRNQHI
Sbjct: 28 YFRSGQTCYHPIRGDQLALLGRRTYPRPHEYLSPADLPKNWDWRNVNGVNYASVTRNQHI 87
Query: 312 PQYCCSCWAHGSSCAMADRLYIQRKGAWPSTLLSVLHVIDCGNAGSCDGGDDLPVRAYAL 491
PQYC SCWAHGS+ AMADR+ I+RKGAWPS LLSV +VIDCGNAGSC+GG+DLPV YA
Sbjct: 88 PQYCGSCWAHGSTSAMADRINIKRKGAWPSILLSVQNVIDCGNAGSCEGGNDLPVWEYAH 147
Query: 492 RLGLSEETCLYFLLHDQVCDLFNPCGT 572
+ G+ +ETC + DQ CD FN CGT
Sbjct: 148 KHGIPDETCNNYQAKDQDCDKFNQCGT 174
>ref|NP_034112.3| dipeptidyl peptidase 1 preproprotein [Mus musculus].
Length = 462
Score = 63.9 bits (154), Expect = 8e-11
Identities = 40/106 (37%), Positives = 54/106 (50%), Gaps = 2/106 (1%)
Frame = +3
Query: 237 DLPWSWDWRNMNGVNYASVTRNQHIPQYCCSCWAHGSSCAMADRLYIQRKGAWPSTLLSV 416
+LP SWDWRN+ GVNY S RNQ + C SC++ S + R+ I + + +LS
Sbjct: 229 NLPESWDWRNVQGVNYVSPVRNQ---ESCGSCYSFASMGMLEARIRILTNNS-QTPILSP 284
Query: 417 LHVIDCG-NAGSCDGG-DDLPVRAYALRLGLSEETCLYFLLHDQVC 548
V+ C A CDGG L YA G+ EE+C + D C
Sbjct: 285 QEVVSCSPYAQGCDGGFPYLIAGKYAQDFGVVEESCFPYTAKDSPC 330
Database: RefSeq44_MP.fasta
Posted date: Nov 15, 2010 4:36 PM
Number of letters in database: 15,452,059
Number of sequences in database: 29,866
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 29866
Number of Hits to DB: 14,438,094
Number of extensions: 337015
Number of successful extensions: 1323
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 1323
Number of HSP's successfully gapped: 2
Length of query: 190
Length of database: 15,452,059
Length adjustment: 95
Effective length of query: 95
Effective length of database: 12,614,789
Effective search space: 1198404955
Effective search space used: 1198404955
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)
Search to RefSeqSP_Rel44
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20070806S-071818
(572 letters)
Database: RefSeq44_SP.fasta
20,576 sequences; 9,542,844 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001116576.1| cathepsin Z [Sus scrofa]. 269 7e-73
Alignment gi|XP_003129789.1| PREDICTED: dipeptidyl peptidase 1-like [Sus ... 57 4e-09
>ref|NP_001116576.1| cathepsin Z [Sus scrofa].
Length = 304
Score = 269 bits (687), Expect = 7e-73
Identities = 121/147 (82%), Positives = 129/147 (87%)
Frame = +3
Query: 132 HFRPGCCCYRPLRGDLRTQLGHRTYPRPHEYLSPSDLPWSWDWRNMNGVNYASVTRNQHI 311
HFRPGC CYRPLRGD RTQLGHRTYPRPHEYLSPSDLP SWDWRN+NGVNYASVTRNQHI
Sbjct: 27 HFRPGCSCYRPLRGDQRTQLGHRTYPRPHEYLSPSDLPRSWDWRNVNGVNYASVTRNQHI 86
Query: 312 PQYCCSCWAHGSSCAMADRLYIQRKGAWPSTLLSVLHVIDCGNAGSCDGGDDLPVRAYAL 491
PQYC SCWAHGS+ AMADR+ I+RKGAWPSTLLSV HVIDCGNAGSC+GGDDLPV AYA
Sbjct: 87 PQYCGSCWAHGSTSAMADRINIKRKGAWPSTLLSVQHVIDCGNAGSCEGGDDLPVWAYAH 146
Query: 492 RLGLSEETCLYFLLHDQVCDLFNPCGT 572
R G+ +ETC + DQVCD FN CGT
Sbjct: 147 RHGIPDETCNNYQAKDQVCDKFNQCGT 173
>ref|XP_003129789.1| PREDICTED: dipeptidyl peptidase 1-like [Sus scrofa].
Length = 463
Score = 57.4 bits (137), Expect = 4e-09
Identities = 39/111 (35%), Positives = 50/111 (45%), Gaps = 2/111 (1%)
Frame = +3
Query: 240 LPWSWDWRNMNGVNYASVTRNQHIPQYCCSCWAHGSSCAMADRLYIQRKGAWPSTLLSVL 419
LP SWDWRN+ G N+ + RNQ C SC++ S M R+ I + +LS
Sbjct: 231 LPASWDWRNVRGTNFVTPVRNQ---ASCGSCYSFASMGMMEARIRILTNNT-QTPILSPQ 286
Query: 420 HVIDCGN-AGSCDGG-DDLPVRAYALRLGLSEETCLYFLLHDQVCDLFNPC 566
V+ C A C GG L YA GL EE C + D C + C
Sbjct: 287 EVVSCSQYAQGCAGGFPYLIAGKYAQDFGLVEEACFPYTGTDSPCTVKEGC 337
Database: RefSeq44_SP.fasta
Posted date: Nov 15, 2010 4:36 PM
Number of letters in database: 9,542,844
Number of sequences in database: 20,576
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 20576
Number of Hits to DB: 9,349,027
Number of extensions: 230901
Number of successful extensions: 920
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 920
Number of HSP's successfully gapped: 2
Length of query: 190
Length of database: 9,542,844
Length adjustment: 92
Effective length of query: 98
Effective length of database: 7,649,852
Effective search space: 749685496
Effective search space used: 749685496
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)