Search to RefSeqBP_Rel44
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20070806S-073115
(952 letters)
Database: RefSeq44_BP.fasta
33,615 sequences; 18,071,151 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001092619.1| cytochrome b ascorbate-dependent protein 3 [... 245 5e-71
Alignment gi|XP_002685326.1| PREDICTED: cytochrome b reductase 1-like [Bo... 119 5e-30
Alignment gi|XP_613965.4| PREDICTED: cytochrome b reductase 1-like [Bos t... 119 5e-30
Alignment gi|NP_777262.1| cytochrome b561 [Bos taurus]. 79 3e-17
>ref|NP_001092619.1| cytochrome b ascorbate-dependent protein 3 [Bos taurus].
Length = 265
Score = 245 bits (625), Expect(2) = 5e-71
Identities = 113/132 (85%), Positives = 119/132 (90%)
Frame = +1
Query: 430 MAVGWFYLSALALFSLGSMCILSTIYWMRYWHEGFA*DGTILTFNWHPVLMVTGMVVLYS 609
MAVGWFYLS LAL SLGSMCIL TIYWMRYWH GFA DG++L FNWHPVLMVTGMVVLYS
Sbjct: 1 MAVGWFYLSVLALCSLGSMCILFTIYWMRYWHGGFAWDGSMLMFNWHPVLMVTGMVVLYS 60
Query: 610 AASLAYRLPQSWVGPKLPWKLGHAAMHLMAFILTVLGLAGVFNSHNHEKIPNLYSLHSWL 789
AASL YRLPQSWVGP+LPWK GHAAMHL+AF+LTVLGL VF HNH KIP+LYSLHSWL
Sbjct: 61 AASLVYRLPQSWVGPRLPWKSGHAAMHLLAFLLTVLGLHAVFEFHNHAKIPHLYSLHSWL 120
Query: 790 GITTVFLFACQW 825
GITTVFLFACQW
Sbjct: 121 GITTVFLFACQW 132
Score = 42.0 bits (97), Expect(2) = 5e-71
Identities = 19/24 (79%), Positives = 20/24 (83%)
Frame = +2
Query: 845 FCCPWASVRLRSLLKPIHVLFGAS 916
F PWAS+ LRSLLKPIHV FGAS
Sbjct: 139 FLLPWASMWLRSLLKPIHVFFGAS 162
>ref|XP_002685326.1| PREDICTED: cytochrome b reductase 1-like [Bos taurus].
Length = 285
Score = 119 bits (298), Expect(2) = 5e-30
Identities = 58/128 (45%), Positives = 81/128 (63%)
Frame = +1
Query: 439 GWFYLSALALFSLGSMCILSTIYWMRYWHEGFA*DGTILTFNWHPVLMVTGMVVLYSAAS 618
G+ L AL +G + ++ T+ W+ + EG DGT L FNWHPVL+VTG V + A
Sbjct: 8 GFLALLVSALL-VGFLSVIFTLIWVLHHREGLGWDGTALEFNWHPVLVVTGFVFILGIAI 66
Query: 619 LAYRLPQSWVGPKLPWKLGHAAMHLMAFILTVLGLAGVFNSHNHEKIPNLYSLHSWLGIT 798
+ YRLP +W KL K HA ++ +A IL ++ L VF+ HN +KIPN+YSLHSW+G+T
Sbjct: 67 IVYRLPWTWKCSKLLMKSIHAGLNTVAAILAIISLVAVFDFHNAKKIPNMYSLHSWVGLT 126
Query: 799 TVFLFACQ 822
V L+ Q
Sbjct: 127 AVILYILQ 134
Score = 30.8 bits (68), Expect(2) = 5e-30
Identities = 13/22 (59%), Positives = 15/22 (68%)
Frame = +2
Query: 845 FCCPWASVRLRSLLKPIHVLFG 910
F PWA + LR+LL PIHV G
Sbjct: 142 FLLPWAPLSLRALLMPIHVYSG 163
>ref|XP_613965.4| PREDICTED: cytochrome b reductase 1-like [Bos taurus].
Length = 285
Score = 119 bits (298), Expect(2) = 5e-30
Identities = 58/128 (45%), Positives = 81/128 (63%)
Frame = +1
Query: 439 GWFYLSALALFSLGSMCILSTIYWMRYWHEGFA*DGTILTFNWHPVLMVTGMVVLYSAAS 618
G+ L AL +G + ++ T+ W+ + EG DGT L FNWHPVL+VTG V + A
Sbjct: 8 GFLALLVSALL-VGFLSVIFTLIWVLHHREGLGWDGTALEFNWHPVLVVTGFVFILGIAI 66
Query: 619 LAYRLPQSWVGPKLPWKLGHAAMHLMAFILTVLGLAGVFNSHNHEKIPNLYSLHSWLGIT 798
+ YRLP +W KL K HA ++ +A IL ++ L VF+ HN +KIPN+YSLHSW+G+T
Sbjct: 67 IVYRLPWTWKCSKLLMKSIHAGLNTVAAILAIISLVAVFDFHNAKKIPNMYSLHSWVGLT 126
Query: 799 TVFLFACQ 822
V L+ Q
Sbjct: 127 AVILYILQ 134
Score = 30.8 bits (68), Expect(2) = 5e-30
Identities = 13/22 (59%), Positives = 15/22 (68%)
Frame = +2
Query: 845 FCCPWASVRLRSLLKPIHVLFG 910
F PWA + LR+LL PIHV G
Sbjct: 142 FLLPWAPLSLRALLMPIHVYSG 163
>ref|NP_777262.1| cytochrome b561 [Bos taurus].
Length = 273
Score = 79.0 bits (193), Expect(2) = 3e-17
Identities = 43/117 (36%), Positives = 63/117 (53%)
Frame = +1
Query: 475 LGSMCILSTIYWMRYWHEGFA*DGTILTFNWHPVLMVTGMVVLYSAASLAYRLPQSWVGP 654
LG + + T W+ + G A + L FN HP+ M+ G+V L A L YR+ ++
Sbjct: 45 LGLIVVAMTGAWLGMYRGGIAWESA-LQFNVHPLCMIIGLVFLQGDALLVYRVFRNEA-- 101
Query: 655 KLPWKLGHAAMHLMAFILTVLGLAGVFNSHNHEKIPNLYSLHSWLGITTVFLFACQW 825
K K+ H +H+ AF++ ++GL VF H + +LYSLHSW GI LF QW
Sbjct: 102 KRTTKVLHGLLHVFAFVIALVGLVAVFEHHRKKGYADLYSLHSWCGILVFALFFAQW 158
Score = 28.1 bits (61), Expect(2) = 3e-17
Identities = 14/27 (51%), Positives = 16/27 (59%)
Frame = +2
Query: 845 FCCPWASVRLRSLLKPIHVLFGASFSL 925
F P AS LRS +P HV FGA+ L
Sbjct: 165 FLFPGASFSLRSRYRPQHVFFGAAIFL 191
Database: RefSeq44_BP.fasta
Posted date: Nov 15, 2010 4:36 PM
Number of letters in database: 18,071,151
Number of sequences in database: 33,615
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33615
Number of Hits to DB: 40,708,550
Number of extensions: 1240865
Number of successful extensions: 6097
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 6076
Number of HSP's successfully gapped: 8
Length of query: 317
Length of database: 18,071,151
Length adjustment: 102
Effective length of query: 215
Effective length of database: 14,642,421
Effective search space: 3148120515
Effective search space used: 3148120515
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqCP_Rel44
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20070806S-073115
(952 letters)
Database: RefSeq44_CP.fasta
33,359 sequences; 18,921,627 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_540920.2| PREDICTED: similar to cytochrome b, ascorbate d... 215 7e-61
Alignment gi|XP_535960.2| PREDICTED: similar to cytochrome b reductase 1 ... 118 4e-29
Alignment gi|XP_853258.1| PREDICTED: similar to Cytochrome b561 (Cytochro... 79 7e-17
>ref|XP_540920.2| PREDICTED: similar to cytochrome b, ascorbate dependent 3 protein
[Canis familiaris].
Length = 242
Score = 215 bits (547), Expect(2) = 7e-61
Identities = 98/132 (74%), Positives = 109/132 (82%)
Frame = +1
Query: 430 MAVGWFYLSALALFSLGSMCILSTIYWMRYWHEGFA*DGTILTFNWHPVLMVTGMVVLYS 609
MAVGWFYLS +L+ LG MCI+ TIYW++ WH GFA DGT+L FN+HPV MV G VVLYS
Sbjct: 1 MAVGWFYLSFYSLWFLGLMCIILTIYWVQLWHGGFAWDGTLLMFNYHPVFMVVGSVVLYS 60
Query: 610 AASLAYRLPQSWVGPKLPWKLGHAAMHLMAFILTVLGLAGVFNSHNHEKIPNLYSLHSWL 789
AASL YRLPQSWVGPKLPWK+GHA +HL+AFILTVLGL VF H +I NLYSLHSWL
Sbjct: 61 AASLLYRLPQSWVGPKLPWKIGHAMLHLLAFILTVLGLVAVFQLHRRSRITNLYSLHSWL 120
Query: 790 GITTVFLFACQW 825
GI TVFLFACQW
Sbjct: 121 GIVTVFLFACQW 132
Score = 38.1 bits (87), Expect(2) = 7e-61
Identities = 17/22 (77%), Positives = 17/22 (77%)
Frame = +2
Query: 845 FCCPWASVRLRSLLKPIHVLFG 910
F PW SV LRSLLKPIHV FG
Sbjct: 139 FLLPWMSVWLRSLLKPIHVFFG 160
>ref|XP_535960.2| PREDICTED: similar to cytochrome b reductase 1 [Canis familiaris].
Length = 280
Score = 118 bits (296), Expect(2) = 4e-29
Identities = 53/116 (45%), Positives = 74/116 (63%)
Frame = +1
Query: 475 LGSMCILSTIYWMRYWHEGFA*DGTILTFNWHPVLMVTGMVVLYSAASLAYRLPQSWVGP 654
+G + ++ ++ W+ ++ EG DGT L FNWHPV MVTG V + A + YRLP +W
Sbjct: 17 VGFLAVVFSLVWVLHYREGLGWDGTALEFNWHPVFMVTGFVFIQGIAIIVYRLPWTWKCS 76
Query: 655 KLPWKLGHAAMHLMAFILTVLGLAGVFNSHNHEKIPNLYSLHSWLGITTVFLFACQ 822
KL K HA +H +A IL ++ L VF+ HN IPN+YSLHSW+G+T V L+ Q
Sbjct: 77 KLLMKSIHAGLHTVAAILVIISLVSVFDYHNAGNIPNMYSLHSWVGLTVVILYILQ 132
Score = 28.5 bits (62), Expect(2) = 4e-29
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = +2
Query: 845 FCCPWASVRLRSLLKPIHVLFG 910
F PWA + LR+L+ P+HV G
Sbjct: 140 FLLPWAPLSLRALVMPMHVYSG 161
>ref|XP_853258.1| PREDICTED: similar to Cytochrome b561 (Cytochrome b-561) [Canis
familiaris].
Length = 252
Score = 78.6 bits (192), Expect(2) = 7e-17
Identities = 43/117 (36%), Positives = 64/117 (54%)
Frame = +1
Query: 475 LGSMCILSTIYWMRYWHEGFA*DGTILTFNWHPVLMVTGMVVLYSAASLAYRLPQSWVGP 654
LG + T W+ + G A +G L FN HP+ MV G++ L A L YR+ ++
Sbjct: 24 LGLTVVAMTGAWLGLYRGGIAWEGA-LQFNVHPLCMVIGLIFLQGDALLVYRVFRNEA-- 80
Query: 655 KLPWKLGHAAMHLMAFILTVLGLAGVFNSHNHEKIPNLYSLHSWLGITTVFLFACQW 825
K K+ H +H++A I+ ++GL VF+ H + +LYSLHSW GI L+ QW
Sbjct: 81 KRTTKVLHGLLHVLALIIALVGLVAVFDYHRQKGYADLYSLHSWCGILVFVLYFMQW 137
Score = 27.3 bits (59), Expect(2) = 7e-17
Identities = 13/24 (54%), Positives = 15/24 (62%)
Frame = +2
Query: 845 FCCPWASVRLRSLLKPIHVLFGAS 916
F P AS LRS +P HV FGA+
Sbjct: 144 FLFPGASFSLRSRYRPQHVFFGAT 167
Database: RefSeq44_CP.fasta
Posted date: Nov 15, 2010 4:36 PM
Number of letters in database: 18,921,627
Number of sequences in database: 33,359
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33359
Number of Hits to DB: 41,443,764
Number of extensions: 1238505
Number of successful extensions: 5905
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 5876
Number of HSP's successfully gapped: 6
Length of query: 317
Length of database: 18,921,627
Length adjustment: 103
Effective length of query: 214
Effective length of database: 15,485,650
Effective search space: 3313929100
Effective search space used: 3313929100
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqHP_Rel44
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20070806S-073115
(952 letters)
Database: RefSeq44_HP.fasta
33,950 sequences; 18,324,212 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001154926.1| cytochrome b ascorbate-dependent protein 3 i... 224 2e-64
Alignment gi|NP_001154924.1| cytochrome b ascorbate-dependent protein 3 i... 214 1e-61
Alignment gi|NP_705839.3| cytochrome b ascorbate-dependent protein 3 isof... 214 1e-61
Alignment gi|NP_079119.3| cytochrome b reductase 1 isoform 1 [Homo sapien... 110 7e-27
Alignment gi|NP_001017917.1| cytochrome b561 [Homo sapiens]. 75 7e-16
Alignment gi|NP_001017916.1| cytochrome b561 [Homo sapiens]. 75 7e-16
Alignment gi|NP_001906.3| cytochrome b561 [Homo sapiens]. 75 7e-16
Alignment gi|NP_001120855.1| cytochrome b reductase 1 isoform 2 [Homo sap... 56 4e-08
>ref|NP_001154926.1| cytochrome b ascorbate-dependent protein 3 isoform 1 [Homo
sapiens].
Length = 259
Score = 224 bits (570), Expect(2) = 2e-64
Identities = 104/137 (75%), Positives = 112/137 (81%)
Frame = +1
Query: 415 ECLIRMAVGWFYLSALALFSLGSMCILSTIYWMRYWHEGFA*DGTILTFNWHPVLMVTGM 594
EC+IRM G FYLS L L SLGSMCIL TIYWM+YW GFA +G+I FNWHPVLMV GM
Sbjct: 13 ECVIRMVSGRFYLSCLLLGSLGSMCILFTIYWMQYWRGGFAWNGSIYMFNWHPVLMVAGM 72
Query: 595 VVLYSAASLAYRLPQSWVGPKLPWKLGHAAMHLMAFILTVLGLAGVFNSHNHEKIPNLYS 774
VV Y ASL YRLPQSWVGPKLPWKL HAA+HLMAF+LTV+GL VF HNH + NLYS
Sbjct: 73 VVFYGGASLVYRLPQSWVGPKLPWKLLHAALHLMAFVLTVVGLVAVFTFHNHGRTANLYS 132
Query: 775 LHSWLGITTVFLFACQW 825
LHSWLGITTVFLFACQW
Sbjct: 133 LHSWLGITTVFLFACQW 149
Score = 40.8 bits (94), Expect(2) = 2e-64
Identities = 18/24 (75%), Positives = 20/24 (83%)
Frame = +2
Query: 845 FCCPWASVRLRSLLKPIHVLFGAS 916
F PWAS+ LRSLLKPIHV FGA+
Sbjct: 156 FLLPWASMWLRSLLKPIHVFFGAA 179
>ref|NP_001154924.1| cytochrome b ascorbate-dependent protein 3 isoform 2 [Homo
sapiens].
Length = 242
Score = 214 bits (546), Expect(2) = 1e-61
Identities = 100/132 (75%), Positives = 107/132 (81%)
Frame = +1
Query: 430 MAVGWFYLSALALFSLGSMCILSTIYWMRYWHEGFA*DGTILTFNWHPVLMVTGMVVLYS 609
M G FYLS L L SLGSMCIL TIYWM+YW GFA +G+I FNWHPVLMV GMVV Y
Sbjct: 1 MVSGRFYLSCLLLGSLGSMCILFTIYWMQYWRGGFAWNGSIYMFNWHPVLMVAGMVVFYG 60
Query: 610 AASLAYRLPQSWVGPKLPWKLGHAAMHLMAFILTVLGLAGVFNSHNHEKIPNLYSLHSWL 789
ASL YRLPQSWVGPKLPWKL HAA+HLMAF+LTV+GL VF HNH + NLYSLHSWL
Sbjct: 61 GASLVYRLPQSWVGPKLPWKLLHAALHLMAFVLTVVGLVAVFTFHNHGRTANLYSLHSWL 120
Query: 790 GITTVFLFACQW 825
GITTVFLFACQW
Sbjct: 121 GITTVFLFACQW 132
Score = 40.8 bits (94), Expect(2) = 1e-61
Identities = 18/24 (75%), Positives = 20/24 (83%)
Frame = +2
Query: 845 FCCPWASVRLRSLLKPIHVLFGAS 916
F PWAS+ LRSLLKPIHV FGA+
Sbjct: 139 FLLPWASMWLRSLLKPIHVFFGAA 162
>ref|NP_705839.3| cytochrome b ascorbate-dependent protein 3 isoform 2 [Homo
sapiens].
Length = 242
Score = 214 bits (546), Expect(2) = 1e-61
Identities = 100/132 (75%), Positives = 107/132 (81%)
Frame = +1
Query: 430 MAVGWFYLSALALFSLGSMCILSTIYWMRYWHEGFA*DGTILTFNWHPVLMVTGMVVLYS 609
M G FYLS L L SLGSMCIL TIYWM+YW GFA +G+I FNWHPVLMV GMVV Y
Sbjct: 1 MVSGRFYLSCLLLGSLGSMCILFTIYWMQYWRGGFAWNGSIYMFNWHPVLMVAGMVVFYG 60
Query: 610 AASLAYRLPQSWVGPKLPWKLGHAAMHLMAFILTVLGLAGVFNSHNHEKIPNLYSLHSWL 789
ASL YRLPQSWVGPKLPWKL HAA+HLMAF+LTV+GL VF HNH + NLYSLHSWL
Sbjct: 61 GASLVYRLPQSWVGPKLPWKLLHAALHLMAFVLTVVGLVAVFTFHNHGRTANLYSLHSWL 120
Query: 790 GITTVFLFACQW 825
GITTVFLFACQW
Sbjct: 121 GITTVFLFACQW 132
Score = 40.8 bits (94), Expect(2) = 1e-61
Identities = 18/24 (75%), Positives = 20/24 (83%)
Frame = +2
Query: 845 FCCPWASVRLRSLLKPIHVLFGAS 916
F PWAS+ LRSLLKPIHV FGA+
Sbjct: 139 FLLPWASMWLRSLLKPIHVFFGAA 162
>ref|NP_079119.3| cytochrome b reductase 1 isoform 1 [Homo sapiens].
Length = 286
Score = 110 bits (274), Expect(2) = 7e-27
Identities = 51/128 (39%), Positives = 77/128 (60%), Gaps = 1/128 (0%)
Frame = +1
Query: 442 WFYLSAL-ALFSLGSMCILSTIYWMRYWHEGFA*DGTILTFNWHPVLMVTGMVVLYSAAS 618
W +L+ L + +G + ++ + W+ ++ EG DG+ L FNWHPVLMVTG V + A
Sbjct: 7 WRFLALLGSALLVGFLSVIFALVWVLHYREGLGWDGSALEFNWHPVLMVTGFVFIQGIAI 66
Query: 619 LAYRLPQSWVGPKLPWKLGHAAMHLMAFILTVLGLAGVFNSHNHEKIPNLYSLHSWLGIT 798
+ YRLP +W KL K HA ++ +A IL ++ + VF +HN I N+YSLHSW+G+
Sbjct: 67 IVYRLPWTWKCSKLLMKSIHAGLNAVAAILAIISVVAVFENHNVNNIANMYSLHSWVGLI 126
Query: 799 TVFLFACQ 822
V + Q
Sbjct: 127 AVICYLLQ 134
Score = 29.3 bits (64), Expect(2) = 7e-27
Identities = 12/22 (54%), Positives = 14/22 (63%)
Frame = +2
Query: 845 FCCPWASVRLRSLLKPIHVLFG 910
F PWA + LR+ L PIHV G
Sbjct: 142 FLLPWAPLSLRAFLMPIHVYSG 163
>ref|NP_001017917.1| cytochrome b561 [Homo sapiens].
Length = 251
Score = 74.7 bits (182), Expect(2) = 7e-16
Identities = 41/117 (35%), Positives = 62/117 (52%)
Frame = +1
Query: 475 LGSMCILSTIYWMRYWHEGFA*DGTILTFNWHPVLMVTGMVVLYSAASLAYRLPQSWVGP 654
LG + T W+ + G A + L FN HP+ MV G++ L A L YR+ ++
Sbjct: 23 LGLTLVAMTGAWLGLYRGGIAWESD-LQFNAHPLCMVIGLIFLQGNALLVYRVFRNEA-- 79
Query: 655 KLPWKLGHAAMHLMAFILTVLGLAGVFNSHNHEKIPNLYSLHSWLGITTVFLFACQW 825
K K+ H +H+ A ++ ++GL VF+ H + +LYSLHSW GI L+ QW
Sbjct: 80 KRTTKVLHGLLHIFALVIALVGLVAVFDYHRKKGYADLYSLHSWCGILVFVLYFVQW 136
Score = 27.7 bits (60), Expect(2) = 7e-16
Identities = 13/27 (48%), Positives = 16/27 (59%)
Frame = +2
Query: 845 FCCPWASVRLRSLLKPIHVLFGASFSL 925
F P AS LRS +P H+ FGA+ L
Sbjct: 143 FLFPGASFSLRSRYRPQHIFFGATIFL 169
>ref|NP_001017916.1| cytochrome b561 [Homo sapiens].
Length = 251
Score = 74.7 bits (182), Expect(2) = 7e-16
Identities = 41/117 (35%), Positives = 62/117 (52%)
Frame = +1
Query: 475 LGSMCILSTIYWMRYWHEGFA*DGTILTFNWHPVLMVTGMVVLYSAASLAYRLPQSWVGP 654
LG + T W+ + G A + L FN HP+ MV G++ L A L YR+ ++
Sbjct: 23 LGLTLVAMTGAWLGLYRGGIAWESD-LQFNAHPLCMVIGLIFLQGNALLVYRVFRNEA-- 79
Query: 655 KLPWKLGHAAMHLMAFILTVLGLAGVFNSHNHEKIPNLYSLHSWLGITTVFLFACQW 825
K K+ H +H+ A ++ ++GL VF+ H + +LYSLHSW GI L+ QW
Sbjct: 80 KRTTKVLHGLLHIFALVIALVGLVAVFDYHRKKGYADLYSLHSWCGILVFVLYFVQW 136
Score = 27.7 bits (60), Expect(2) = 7e-16
Identities = 13/27 (48%), Positives = 16/27 (59%)
Frame = +2
Query: 845 FCCPWASVRLRSLLKPIHVLFGASFSL 925
F P AS LRS +P H+ FGA+ L
Sbjct: 143 FLFPGASFSLRSRYRPQHIFFGATIFL 169
>ref|NP_001906.3| cytochrome b561 [Homo sapiens].
Length = 251
Score = 74.7 bits (182), Expect(2) = 7e-16
Identities = 41/117 (35%), Positives = 62/117 (52%)
Frame = +1
Query: 475 LGSMCILSTIYWMRYWHEGFA*DGTILTFNWHPVLMVTGMVVLYSAASLAYRLPQSWVGP 654
LG + T W+ + G A + L FN HP+ MV G++ L A L YR+ ++
Sbjct: 23 LGLTLVAMTGAWLGLYRGGIAWESD-LQFNAHPLCMVIGLIFLQGNALLVYRVFRNEA-- 79
Query: 655 KLPWKLGHAAMHLMAFILTVLGLAGVFNSHNHEKIPNLYSLHSWLGITTVFLFACQW 825
K K+ H +H+ A ++ ++GL VF+ H + +LYSLHSW GI L+ QW
Sbjct: 80 KRTTKVLHGLLHIFALVIALVGLVAVFDYHRKKGYADLYSLHSWCGILVFVLYFVQW 136
Score = 27.7 bits (60), Expect(2) = 7e-16
Identities = 13/27 (48%), Positives = 16/27 (59%)
Frame = +2
Query: 845 FCCPWASVRLRSLLKPIHVLFGASFSL 925
F P AS LRS +P H+ FGA+ L
Sbjct: 143 FLFPGASFSLRSRYRPQHIFFGATIFL 169
>ref|NP_001120855.1| cytochrome b reductase 1 isoform 2 [Homo sapiens].
Length = 157
Score = 56.2 bits (134), Expect = 4e-08
Identities = 27/81 (33%), Positives = 44/81 (54%), Gaps = 1/81 (1%)
Frame = +1
Query: 442 WFYLSAL-ALFSLGSMCILSTIYWMRYWHEGFA*DGTILTFNWHPVLMVTGMVVLYSAAS 618
W +L+ L + +G + ++ + W+ ++ EG DG+ L FNWHPVLMVTG V + AS
Sbjct: 7 WRFLALLGSALLVGFLSVIFALVWVLHYREGLGWDGSALEFNWHPVLMVTGFVFIQGIAS 66
Query: 619 LAYRLPQSWVGPKLPWKLGHA 681
+ + +G + HA
Sbjct: 67 FRFFSLSASMGSAFSPSISHA 87
Database: RefSeq44_HP.fasta
Posted date: Nov 15, 2010 4:36 PM
Number of letters in database: 18,324,212
Number of sequences in database: 33,950
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33950
Number of Hits to DB: 40,997,835
Number of extensions: 1227786
Number of successful extensions: 5892
Number of sequences better than 1.0e-05: 8
Number of HSP's gapped: 5874
Number of HSP's successfully gapped: 15
Length of query: 317
Length of database: 18,324,212
Length adjustment: 102
Effective length of query: 215
Effective length of database: 14,861,312
Effective search space: 3195182080
Effective search space used: 3195182080
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqMP_Rel44
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20070806S-073115
(952 letters)
Database: RefSeq44_MP.fasta
29,866 sequences; 15,452,059 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_958739.1| cytochrome b ascorbate-dependent protein 3 [Mus... 216 2e-61
Alignment gi|NP_082869.2| cytochrome b reductase 1 [Mus musculus]. 107 1e-25
Alignment gi|NP_031831.2| cytochrome b561 [Mus musculus]. 78 4e-17
>ref|NP_958739.1| cytochrome b ascorbate-dependent protein 3 [Mus musculus].
Length = 242
Score = 216 bits (550), Expect(2) = 2e-61
Identities = 98/132 (74%), Positives = 108/132 (81%)
Frame = +1
Query: 430 MAVGWFYLSALALFSLGSMCILSTIYWMRYWHEGFA*DGTILTFNWHPVLMVTGMVVLYS 609
MA GWFYLS + L SLGSMCIL T YWM+YW GFA DGT+L FNWHPVLMV GMVVLY
Sbjct: 1 MASGWFYLSCMVLGSLGSMCILFTAYWMQYWRGGFAWDGTVLMFNWHPVLMVAGMVVLYG 60
Query: 610 AASLAYRLPQSWVGPKLPWKLGHAAMHLMAFILTVLGLAGVFNSHNHEKIPNLYSLHSWL 789
AASL YRLP SWVGP+LPWK+ HAA+HL+AF TV+GL VF HNH +I +LYSLHSWL
Sbjct: 61 AASLVYRLPSSWVGPRLPWKVLHAALHLLAFTCTVVGLIAVFRFHNHSRIAHLYSLHSWL 120
Query: 790 GITTVFLFACQW 825
GITTV LFACQW
Sbjct: 121 GITTVVLFACQW 132
Score = 38.5 bits (88), Expect(2) = 2e-61
Identities = 17/23 (73%), Positives = 18/23 (78%)
Frame = +2
Query: 845 FCCPWASVRLRSLLKPIHVLFGA 913
F PWAS LRSLLKP+HV FGA
Sbjct: 139 FLLPWASQWLRSLLKPLHVFFGA 161
>ref|NP_082869.2| cytochrome b reductase 1 [Mus musculus].
Length = 290
Score = 107 bits (266), Expect(2) = 1e-25
Identities = 47/116 (40%), Positives = 74/116 (63%)
Frame = +1
Query: 475 LGSMCILSTIYWMRYWHEGFA*DGTILTFNWHPVLMVTGMVVLYSAASLAYRLPQSWVGP 654
+G + ++ + W+ ++ EG +G+ L FNWHPVL VTG V + A + YRLP +W
Sbjct: 19 VGFLSVIFVLIWVLHFREGLGWNGSGLEFNWHPVLAVTGFVFIQGIAIIVYRLPWTWKCS 78
Query: 655 KLPWKLGHAAMHLMAFILTVLGLAGVFNSHNHEKIPNLYSLHSWLGITTVFLFACQ 822
KL K HA ++ +A IL ++ + VF HN +K+P++YSLHSW+G+T + L+ Q
Sbjct: 79 KLLMKSIHAGLNAVAAILAIISVVAVFEYHNVQKVPHMYSLHSWVGLTALILYIQQ 134
Score = 27.7 bits (60), Expect(2) = 1e-25
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = +2
Query: 845 FCCPWASVRLRSLLKPIHVLFG 910
F PWA LR+++ PIHV G
Sbjct: 142 FLLPWAPPSLRAIVMPIHVYSG 163
>ref|NP_031831.2| cytochrome b561 [Mus musculus].
Length = 250
Score = 78.2 bits (191), Expect(2) = 4e-17
Identities = 44/117 (37%), Positives = 63/117 (53%)
Frame = +1
Query: 475 LGSMCILSTIYWMRYWHEGFA*DGTILTFNWHPVLMVTGMVVLYSAASLAYRLPQSWVGP 654
LG + T W+ + G A + + L FN HP+ MV GM+ L A L YR+ +
Sbjct: 22 LGLTVVAVTGAWLGLYRGGIAWESS-LQFNVHPLCMVIGMIFLQGDALLVYRVFRREA-- 78
Query: 655 KLPWKLGHAAMHLMAFILTVLGLAGVFNSHNHEKIPNLYSLHSWLGITTVFLFACQW 825
K K+ H +H+ AFI+ ++GL VF+ H + +LYSLHSW GI L+ QW
Sbjct: 79 KRTTKILHGLLHVFAFIIALVGLVAVFDYHKKKGYADLYSLHSWCGILVFVLYFVQW 135
Score = 28.1 bits (61), Expect(2) = 4e-17
Identities = 13/28 (46%), Positives = 17/28 (60%)
Frame = +2
Query: 845 FCCPWASVRLRSLLKPIHVLFGASFSLW 928
F P AS LRS +P H+ FGA+ L+
Sbjct: 142 FLFPGASFSLRSRYRPQHIFFGATIFLF 169
Database: RefSeq44_MP.fasta
Posted date: Nov 15, 2010 4:36 PM
Number of letters in database: 15,452,059
Number of sequences in database: 29,866
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 29866
Number of Hits to DB: 33,855,421
Number of extensions: 986648
Number of successful extensions: 4736
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 4718
Number of HSP's successfully gapped: 6
Length of query: 317
Length of database: 15,452,059
Length adjustment: 101
Effective length of query: 216
Effective length of database: 12,435,593
Effective search space: 2686088088
Effective search space used: 2686088088
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel44
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20070806S-073115
(952 letters)
Database: RefSeq44_SP.fasta
20,576 sequences; 9,542,844 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003122686.1| PREDICTED: cytochrome b ascorbate-dependent ... 274 3e-81
Alignment gi|XP_003122687.1| PREDICTED: cytochrome b ascorbate-dependent ... 274 3e-81
Alignment gi|NP_001121924.1| cytochrome b reductase 1 [Sus scrofa]. 118 4e-30
Alignment gi|NP_001090991.1| cytochrome b561 [Sus scrofa]. 81 3e-18
>ref|XP_003122686.1| PREDICTED: cytochrome b ascorbate-dependent protein 3-like isoform
1 [Sus scrofa].
Length = 242
Score = 274 bits (700), Expect(2) = 3e-81
Identities = 128/132 (96%), Positives = 129/132 (97%)
Frame = +1
Query: 430 MAVGWFYLSALALFSLGSMCILSTIYWMRYWHEGFA*DGTILTFNWHPVLMVTGMVVLYS 609
MAVGWFYLSALALFSLGSMCILSTIYWMRYWH+GFA DGTILTFNWHPVLMVTGMVVLYS
Sbjct: 1 MAVGWFYLSALALFSLGSMCILSTIYWMRYWHKGFAWDGTILTFNWHPVLMVTGMVVLYS 60
Query: 610 AASLAYRLPQSWVGPKLPWKLGHAAMHLMAFILTVLGLAGVFNSHNHEKIPNLYSLHSWL 789
AASLAYRLPQSWVGPKLPWKLGHAAMHLMAFILTVLGLA VFN HNHEKIPNLYSLHSWL
Sbjct: 61 AASLAYRLPQSWVGPKLPWKLGHAAMHLMAFILTVLGLAAVFNFHNHEKIPNLYSLHSWL 120
Query: 790 GITTVFLFACQW 825
GITTVFLFACQW
Sbjct: 121 GITTVFLFACQW 132
Score = 46.2 bits (108), Expect(2) = 3e-81
Identities = 21/24 (87%), Positives = 21/24 (87%)
Frame = +2
Query: 845 FCCPWASVRLRSLLKPIHVLFGAS 916
F PWASVRLRSLLKPIHV FGAS
Sbjct: 139 FLLPWASVRLRSLLKPIHVFFGAS 162
>ref|XP_003122687.1| PREDICTED: cytochrome b ascorbate-dependent protein 3-like isoform
2 [Sus scrofa].
Length = 242
Score = 274 bits (700), Expect(2) = 3e-81
Identities = 128/132 (96%), Positives = 129/132 (97%)
Frame = +1
Query: 430 MAVGWFYLSALALFSLGSMCILSTIYWMRYWHEGFA*DGTILTFNWHPVLMVTGMVVLYS 609
MAVGWFYLSALALFSLGSMCILSTIYWMRYWH+GFA DGTILTFNWHPVLMVTGMVVLYS
Sbjct: 1 MAVGWFYLSALALFSLGSMCILSTIYWMRYWHKGFAWDGTILTFNWHPVLMVTGMVVLYS 60
Query: 610 AASLAYRLPQSWVGPKLPWKLGHAAMHLMAFILTVLGLAGVFNSHNHEKIPNLYSLHSWL 789
AASLAYRLPQSWVGPKLPWKLGHAAMHLMAFILTVLGLA VFN HNHEKIPNLYSLHSWL
Sbjct: 61 AASLAYRLPQSWVGPKLPWKLGHAAMHLMAFILTVLGLAAVFNFHNHEKIPNLYSLHSWL 120
Query: 790 GITTVFLFACQW 825
GITTVFLFACQW
Sbjct: 121 GITTVFLFACQW 132
Score = 46.2 bits (108), Expect(2) = 3e-81
Identities = 21/24 (87%), Positives = 21/24 (87%)
Frame = +2
Query: 845 FCCPWASVRLRSLLKPIHVLFGAS 916
F PWASVRLRSLLKPIHV FGAS
Sbjct: 139 FLLPWASVRLRSLLKPIHVFFGAS 162
>ref|NP_001121924.1| cytochrome b reductase 1 [Sus scrofa].
Length = 285
Score = 118 bits (296), Expect(2) = 4e-30
Identities = 57/128 (44%), Positives = 80/128 (62%)
Frame = +1
Query: 439 GWFYLSALALFSLGSMCILSTIYWMRYWHEGFA*DGTILTFNWHPVLMVTGMVVLYSAAS 618
G+ L AL +G + ++ T+ W+ ++ EG DGT L FNWHPVL+VTG V + A
Sbjct: 8 GFLALLVSALL-VGFLSVIFTLIWVLHYREGLGWDGTALEFNWHPVLIVTGFVFIQGIAI 66
Query: 619 LAYRLPQSWVGPKLPWKLGHAAMHLMAFILTVLGLAGVFNSHNHEKIPNLYSLHSWLGIT 798
+ YRLP +W KL K HA ++ +A IL ++ L VF+ HN KIPN+YSLHSW+G+
Sbjct: 67 IVYRLPWTWKCSKLLMKSIHAGLNTVAAILAIISLVAVFDFHNARKIPNMYSLHSWVGLA 126
Query: 799 TVFLFACQ 822
V L+ Q
Sbjct: 127 AVILYMLQ 134
Score = 30.8 bits (68), Expect(2) = 4e-30
Identities = 13/22 (59%), Positives = 15/22 (68%)
Frame = +2
Query: 845 FCCPWASVRLRSLLKPIHVLFG 910
F PWA + LR+LL PIHV G
Sbjct: 142 FLLPWAPLSLRALLMPIHVYSG 163
>ref|NP_001090991.1| cytochrome b561 [Sus scrofa].
Length = 252
Score = 81.3 bits (199), Expect(2) = 3e-18
Identities = 44/117 (37%), Positives = 65/117 (55%)
Frame = +1
Query: 475 LGSMCILSTIYWMRYWHEGFA*DGTILTFNWHPVLMVTGMVVLYSAASLAYRLPQSWVGP 654
LG + T W+ + G A + L FN HP+ M+ G+V L A L YR+ ++
Sbjct: 24 LGLTVVAVTGAWLGAYRGGIAWESA-LQFNVHPLCMIIGLVFLQGDALLVYRVFRNEA-- 80
Query: 655 KLPWKLGHAAMHLMAFILTVLGLAGVFNSHNHEKIPNLYSLHSWLGITTVFLFACQW 825
K K+ H +H++AF++ ++GL VF+ H + I +LYSLHSW GI LF QW
Sbjct: 81 KRTTKILHGLLHVLAFVIALVGLVAVFDYHRKKGIADLYSLHSWCGILVFVLFLAQW 137
Score = 28.1 bits (61), Expect(2) = 3e-18
Identities = 14/27 (51%), Positives = 16/27 (59%)
Frame = +2
Query: 845 FCCPWASVRLRSLLKPIHVLFGASFSL 925
F P AS LRS +P HV FGA+ L
Sbjct: 144 FLFPGASFSLRSRYRPQHVFFGAAIFL 170
Database: RefSeq44_SP.fasta
Posted date: Nov 15, 2010 4:36 PM
Number of letters in database: 9,542,844
Number of sequences in database: 20,576
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 20576
Number of Hits to DB: 21,675,395
Number of extensions: 659213
Number of successful extensions: 3181
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 3169
Number of HSP's successfully gapped: 8
Length of query: 317
Length of database: 9,542,844
Length adjustment: 98
Effective length of query: 219
Effective length of database: 7,526,396
Effective search space: 1648280724
Effective search space used: 1648280724
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 33 (17.3 bits)