Search to RefSeqBP_Rel44
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20101001C-000023
(1090 letters)
Database: RefSeq44_BP.fasta
33,615 sequences; 18,071,151 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_002697965.1| PREDICTED: tumor protein, translationally-co... 208 8e-54
Alignment gi|NP_001014410.1| translationally-controlled tumor protein [Bo... 208 8e-54
Alignment gi|XP_002694752.1| PREDICTED: tumor protein, translationally-co... 202 4e-52
Alignment gi|XP_001254327.1| PREDICTED: tumor protein, translationally-co... 202 4e-52
Alignment gi|XP_002690958.1| PREDICTED: tumor protein, translationally-co... 81 2e-15
Alignment gi|XP_002700688.1| PREDICTED: tumor protein, translationally-co... 81 2e-15
>ref|XP_002697965.1| PREDICTED: tumor protein, translationally-controlled 1-like [Bos
taurus].
Length = 172
Score = 208 bits (529), Expect = 8e-54
Identities = 109/145 (75%), Positives = 115/145 (79%), Gaps = 1/145 (0%)
Frame = +3
Query: 657 MIIYRDLISHDEMFSDIYKIREIADGLCLEVEGKMVSRTEGNIDDSLIGGNASAEGPEGE 836
MIIYRDLISHDEMFSDIYKIRE+ADGLCLEVEGKMVSRTEGNIDDSLIGGNASAEGPEGE
Sbjct: 1 MIIYRDLISHDEMFSDIYKIREVADGLCLEVEGKMVSRTEGNIDDSLIGGNASAEGPEGE 60
Query: 837 GTESTVITGVDIVMNHHLQETSFTKEALQKYIKDYMKINQGKTREQRPEGVN-LL*QELQ 1013
GTESTVITGVDIVMNHHLQETSFTKEA +KYIKDYMK +GK EQRPE V + +
Sbjct: 61 GTESTVITGVDIVMNHHLQETSFTKEAYKKYIKDYMKSIKGKLEEQRPERVKPFMTGAAE 120
Query: 1014 NKXXXXXXXXXXXXXYGGNMNPNGM 1088
G NMNP+GM
Sbjct: 121 QIKHILANFKNYQFFIGENMNPDGM 145
>ref|NP_001014410.1| translationally-controlled tumor protein [Bos taurus].
Length = 172
Score = 208 bits (529), Expect = 8e-54
Identities = 109/145 (75%), Positives = 115/145 (79%), Gaps = 1/145 (0%)
Frame = +3
Query: 657 MIIYRDLISHDEMFSDIYKIREIADGLCLEVEGKMVSRTEGNIDDSLIGGNASAEGPEGE 836
MIIYRDLISHDEMFSDIYKIRE+ADGLCLEVEGKMVSRTEGNIDDSLIGGNASAEGPEGE
Sbjct: 1 MIIYRDLISHDEMFSDIYKIREVADGLCLEVEGKMVSRTEGNIDDSLIGGNASAEGPEGE 60
Query: 837 GTESTVITGVDIVMNHHLQETSFTKEALQKYIKDYMKINQGKTREQRPEGVN-LL*QELQ 1013
GTESTVITGVDIVMNHHLQETSFTKEA +KYIKDYMK +GK EQRPE V + +
Sbjct: 61 GTESTVITGVDIVMNHHLQETSFTKEAYKKYIKDYMKSIKGKLEEQRPERVKPFMTGAAE 120
Query: 1014 NKXXXXXXXXXXXXXYGGNMNPNGM 1088
G NMNP+GM
Sbjct: 121 QIKHILANFKNYQFFIGENMNPDGM 145
>ref|XP_002694752.1| PREDICTED: tumor protein, translationally-controlled 1-like [Bos
taurus].
Length = 172
Score = 202 bits (514), Expect = 4e-52
Identities = 106/145 (73%), Positives = 114/145 (78%), Gaps = 1/145 (0%)
Frame = +3
Query: 657 MIIYRDLISHDEMFSDIYKIREIADGLCLEVEGKMVSRTEGNIDDSLIGGNASAEGPEGE 836
MIIYRDLISHD+MFSDIYKIRE+ADGLCLEVEGKMVSRTEGNIDDSLIGGNASAEGP+GE
Sbjct: 1 MIIYRDLISHDKMFSDIYKIREVADGLCLEVEGKMVSRTEGNIDDSLIGGNASAEGPDGE 60
Query: 837 GTESTVITGVDIVMNHHLQETSFTKEALQKYIKDYMKINQGKTREQRPEGVN-LL*QELQ 1013
GTESTVITGVDIVMNH LQETSFTKEA +KYIKDYMK +GK EQRPE V + +
Sbjct: 61 GTESTVITGVDIVMNHRLQETSFTKEAYKKYIKDYMKSIKGKLEEQRPERVKPFMTGAAE 120
Query: 1014 NKXXXXXXXXXXXXXYGGNMNPNGM 1088
G NMNP+GM
Sbjct: 121 QIKHILANFKNYQFFIGENMNPDGM 145
>ref|XP_001254327.1| PREDICTED: tumor protein, translationally-controlled 1 [Bos taurus].
Length = 172
Score = 202 bits (514), Expect = 4e-52
Identities = 106/145 (73%), Positives = 114/145 (78%), Gaps = 1/145 (0%)
Frame = +3
Query: 657 MIIYRDLISHDEMFSDIYKIREIADGLCLEVEGKMVSRTEGNIDDSLIGGNASAEGPEGE 836
MIIYRDLISHD+MFSDIYKIRE+ADGLCLEVEGKMVSRTEGNIDDSLIGGNASAEGP+GE
Sbjct: 1 MIIYRDLISHDKMFSDIYKIREVADGLCLEVEGKMVSRTEGNIDDSLIGGNASAEGPDGE 60
Query: 837 GTESTVITGVDIVMNHHLQETSFTKEALQKYIKDYMKINQGKTREQRPEGVN-LL*QELQ 1013
GTESTVITGVDIVMNH LQETSFTKEA +KYIKDYMK +GK EQRPE V + +
Sbjct: 61 GTESTVITGVDIVMNHRLQETSFTKEAYKKYIKDYMKSIKGKLEEQRPERVKPFMTGAAE 120
Query: 1014 NKXXXXXXXXXXXXXYGGNMNPNGM 1088
G NMNP+GM
Sbjct: 121 QIKHILANFKNYQFFIGENMNPDGM 145
>ref|XP_002690958.1| PREDICTED: tumor protein, translationally-controlled 1-like [Bos
taurus].
Length = 126
Score = 80.9 bits (198), Expect = 2e-15
Identities = 45/80 (56%), Positives = 50/80 (62%), Gaps = 1/80 (1%)
Frame = +3
Query: 852 VITGVDIVMNHHLQETSFTKEALQKYIKDYMKINQGKTREQRPEGVN-LL*QELQNKXXX 1028
VITGVDIVMNHHLQETSFTKEA +KYIKDYMK +GK EQRPE V + +
Sbjct: 20 VITGVDIVMNHHLQETSFTKEAYKKYIKDYMKSIKGKLEEQRPERVKPFMTGAAEQIKHI 79
Query: 1029 XXXXXXXXXXYGGNMNPNGM 1088
G NMNP+GM
Sbjct: 80 LANFKNYQFFIGENMNPDGM 99
>ref|XP_002700688.1| PREDICTED: tumor protein, translationally-controlled 1-like [Bos
taurus].
Length = 126
Score = 80.9 bits (198), Expect = 2e-15
Identities = 45/80 (56%), Positives = 50/80 (62%), Gaps = 1/80 (1%)
Frame = +3
Query: 852 VITGVDIVMNHHLQETSFTKEALQKYIKDYMKINQGKTREQRPEGVN-LL*QELQNKXXX 1028
VITGVDIVMNHHLQETSFTKEA +KYIKDYMK +GK EQRPE V + +
Sbjct: 20 VITGVDIVMNHHLQETSFTKEAYKKYIKDYMKSIKGKLEEQRPERVKPFMTGAAEQIKHI 79
Query: 1029 XXXXXXXXXXYGGNMNPNGM 1088
G NMNP+GM
Sbjct: 80 LANFKNYQFFIGENMNPDGM 99
Database: RefSeq44_BP.fasta
Posted date: Nov 15, 2010 4:36 PM
Number of letters in database: 18,071,151
Number of sequences in database: 33,615
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33615
Number of Hits to DB: 36,321,434
Number of extensions: 857620
Number of successful extensions: 2717
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 2708
Number of HSP's successfully gapped: 6
Length of query: 363
Length of database: 18,071,151
Length adjustment: 104
Effective length of query: 259
Effective length of database: 14,575,191
Effective search space: 3774974469
Effective search space used: 3774974469
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqCP_Rel44
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20101001C-000023
(1090 letters)
Database: RefSeq44_CP.fasta
33,359 sequences; 18,921,627 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_856393.1| PREDICTED: similar to Translationally controlle... 206 2e-58
Alignment gi|XP_856566.1| PREDICTED: similar to Translationally controlle... 208 6e-54
Alignment gi|XP_856519.1| PREDICTED: similar to Translationally controlle... 208 6e-54
Alignment gi|XP_856437.1| PREDICTED: similar to Translationally controlle... 208 6e-54
Alignment gi|XP_534126.1| PREDICTED: similar to Translationally controlle... 208 6e-54
Alignment gi|XP_856352.1| PREDICTED: similar to Translationally controlle... 178 4e-50
Alignment gi|XP_856480.1| PREDICTED: similar to Translationally controlle... 141 1e-33
Alignment gi|XP_854430.1| PREDICTED: similar to Neuromedin-B receptor (NM... 61 2e-09
>ref|XP_856393.1| PREDICTED: similar to Translationally controlled tumor protein
(TCTP) (p23) (Histamine-releasing factor) (HRF) isoform
3 [Canis familiaris].
Length = 133
Score = 206 bits (523), Expect(2) = 2e-58
Identities = 103/111 (92%), Positives = 105/111 (94%)
Frame = +3
Query: 657 MIIYRDLISHDEMFSDIYKIREIADGLCLEVEGKMVSRTEGNIDDSLIGGNASAEGPEGE 836
MIIYRDLISHDEMFSDIYKIREIADGLCLEVEGKMVSRTEGNIDDSLIGGNASAEGPEGE
Sbjct: 1 MIIYRDLISHDEMFSDIYKIREIADGLCLEVEGKMVSRTEGNIDDSLIGGNASAEGPEGE 60
Query: 837 GTESTVITGVDIVMNHHLQETSFTKEALQKYIKDYMKINQGKTREQRPEGV 989
GTESTVITGVDIVMNHHLQETSFTKEA +KYIKDYMK +GK EQRPE V
Sbjct: 61 GTESTVITGVDIVMNHHLQETSFTKEAYKKYIKDYMKSIKGKLEEQRPERV 111
Score = 39.3 bits (90), Expect(2) = 2e-58
Identities = 17/19 (89%), Positives = 19/19 (100%)
Frame = +2
Query: 989 KPFMTGAAKQIQHILANFK 1045
KPFMTGAA+QI+HILANFK
Sbjct: 112 KPFMTGAAEQIKHILANFK 130
>ref|XP_856566.1| PREDICTED: similar to Translationally controlled tumor protein (TCTP)
(p23) (Histamine-releasing factor) (HRF) isoform 7 [Canis
familiaris].
Length = 172
Score = 208 bits (530), Expect = 6e-54
Identities = 110/145 (75%), Positives = 115/145 (79%), Gaps = 1/145 (0%)
Frame = +3
Query: 657 MIIYRDLISHDEMFSDIYKIREIADGLCLEVEGKMVSRTEGNIDDSLIGGNASAEGPEGE 836
MIIYRDLISHDEMFSDIYKIREIADGLCLEVEGKMVSRTEGNIDDSLIGGNASAEGPEGE
Sbjct: 1 MIIYRDLISHDEMFSDIYKIREIADGLCLEVEGKMVSRTEGNIDDSLIGGNASAEGPEGE 60
Query: 837 GTESTVITGVDIVMNHHLQETSFTKEALQKYIKDYMKINQGKTREQRPEGVN-LL*QELQ 1013
GTESTVITGVDIVMNHHLQETSFTKEA +KYIKDYMK +GK EQRPE V + +
Sbjct: 61 GTESTVITGVDIVMNHHLQETSFTKEAYKKYIKDYMKSIKGKLEEQRPERVKPFMTGAAE 120
Query: 1014 NKXXXXXXXXXXXXXYGGNMNPNGM 1088
G NMNP+GM
Sbjct: 121 QIKHILANFKNYQFFIGENMNPDGM 145
>ref|XP_856519.1| PREDICTED: similar to Translationally controlled tumor protein (TCTP)
(p23) (Histamine-releasing factor) (HRF) isoform 6 [Canis
familiaris].
Length = 172
Score = 208 bits (530), Expect = 6e-54
Identities = 110/145 (75%), Positives = 115/145 (79%), Gaps = 1/145 (0%)
Frame = +3
Query: 657 MIIYRDLISHDEMFSDIYKIREIADGLCLEVEGKMVSRTEGNIDDSLIGGNASAEGPEGE 836
MIIYRDLISHDEMFSDIYKIREIADGLCLEVEGKMVSRTEGNIDDSLIGGNASAEGPEGE
Sbjct: 1 MIIYRDLISHDEMFSDIYKIREIADGLCLEVEGKMVSRTEGNIDDSLIGGNASAEGPEGE 60
Query: 837 GTESTVITGVDIVMNHHLQETSFTKEALQKYIKDYMKINQGKTREQRPEGVN-LL*QELQ 1013
GTESTVITGVDIVMNHHLQETSFTKEA +KYIKDYMK +GK EQRPE V + +
Sbjct: 61 GTESTVITGVDIVMNHHLQETSFTKEAYKKYIKDYMKSIKGKLEEQRPERVKPFMTGAAE 120
Query: 1014 NKXXXXXXXXXXXXXYGGNMNPNGM 1088
G NMNP+GM
Sbjct: 121 QIKHILANFKNYQFFIGENMNPDGM 145
>ref|XP_856437.1| PREDICTED: similar to Translationally controlled tumor protein (TCTP)
(p23) (Histamine-releasing factor) (HRF) isoform 4 [Canis
familiaris].
Length = 172
Score = 208 bits (530), Expect = 6e-54
Identities = 110/145 (75%), Positives = 115/145 (79%), Gaps = 1/145 (0%)
Frame = +3
Query: 657 MIIYRDLISHDEMFSDIYKIREIADGLCLEVEGKMVSRTEGNIDDSLIGGNASAEGPEGE 836
MIIYRDLISHDEMFSDIYKIREIADGLCLEVEGKMVSRTEGNIDDSLIGGNASAEGPEGE
Sbjct: 1 MIIYRDLISHDEMFSDIYKIREIADGLCLEVEGKMVSRTEGNIDDSLIGGNASAEGPEGE 60
Query: 837 GTESTVITGVDIVMNHHLQETSFTKEALQKYIKDYMKINQGKTREQRPEGVN-LL*QELQ 1013
GTESTVITGVDIVMNHHLQETSFTKEA +KYIKDYMK +GK EQRPE V + +
Sbjct: 61 GTESTVITGVDIVMNHHLQETSFTKEAYKKYIKDYMKSIKGKLEEQRPERVKPFMTGAAE 120
Query: 1014 NKXXXXXXXXXXXXXYGGNMNPNGM 1088
G NMNP+GM
Sbjct: 121 QIKHILANFKNYQFFIGENMNPDGM 145
>ref|XP_534126.1| PREDICTED: similar to Translationally controlled tumor protein (TCTP)
(p23) (Histamine-releasing factor) (HRF) isoform 1 [Canis
familiaris].
Length = 172
Score = 208 bits (530), Expect = 6e-54
Identities = 110/145 (75%), Positives = 115/145 (79%), Gaps = 1/145 (0%)
Frame = +3
Query: 657 MIIYRDLISHDEMFSDIYKIREIADGLCLEVEGKMVSRTEGNIDDSLIGGNASAEGPEGE 836
MIIYRDLISHDEMFSDIYKIREIADGLCLEVEGKMVSRTEGNIDDSLIGGNASAEGPEGE
Sbjct: 1 MIIYRDLISHDEMFSDIYKIREIADGLCLEVEGKMVSRTEGNIDDSLIGGNASAEGPEGE 60
Query: 837 GTESTVITGVDIVMNHHLQETSFTKEALQKYIKDYMKINQGKTREQRPEGVN-LL*QELQ 1013
GTESTVITGVDIVMNHHLQETSFTKEA +KYIKDYMK +GK EQRPE V + +
Sbjct: 61 GTESTVITGVDIVMNHHLQETSFTKEAYKKYIKDYMKSIKGKLEEQRPERVKPFMTGAAE 120
Query: 1014 NKXXXXXXXXXXXXXYGGNMNPNGM 1088
G NMNP+GM
Sbjct: 121 QIKHILANFKNYQFFIGENMNPDGM 145
>ref|XP_856352.1| PREDICTED: similar to Translationally controlled tumor protein
(TCTP) (p23) (Histamine-releasing factor) (HRF) isoform
2 [Canis familiaris].
Length = 152
Score = 178 bits (452), Expect(2) = 4e-50
Identities = 90/96 (93%), Positives = 93/96 (96%)
Frame = +3
Query: 657 MIIYRDLISHDEMFSDIYKIREIADGLCLEVEGKMVSRTEGNIDDSLIGGNASAEGPEGE 836
MIIYRDLISHDEMFSDIYKIREIADGLCLEVEGKMVSRTEGNIDDSLIGGNASAEGPEGE
Sbjct: 1 MIIYRDLISHDEMFSDIYKIREIADGLCLEVEGKMVSRTEGNIDDSLIGGNASAEGPEGE 60
Query: 837 GTESTVITGVDIVMNHHLQETSFTKEALQKYIKDYM 944
GTESTVITGVDIVMNHHLQETSFTKEA +K +K +M
Sbjct: 61 GTESTVITGVDIVMNHHLQETSFTKEAYKK-VKPFM 95
Score = 39.3 bits (90), Expect(2) = 4e-50
Identities = 17/19 (89%), Positives = 19/19 (100%)
Frame = +2
Query: 989 KPFMTGAAKQIQHILANFK 1045
KPFMTGAA+QI+HILANFK
Sbjct: 92 KPFMTGAAEQIKHILANFK 110
>ref|XP_856480.1| PREDICTED: similar to Translationally controlled tumor protein (TCTP)
(p23) (Histamine-releasing factor) (HRF) isoform 5 [Canis
familiaris].
Length = 138
Score = 141 bits (355), Expect = 1e-33
Identities = 76/111 (68%), Positives = 81/111 (72%), Gaps = 1/111 (0%)
Frame = +3
Query: 759 MVSRTEGNIDDSLIGGNASAEGPEGEGTESTVITGVDIVMNHHLQETSFTKEALQKYIKD 938
MVSRTEGNIDDSLIGGNASAEGPEGEGTESTVITGVDIVMNHHLQETSFTKEA +KYIKD
Sbjct: 1 MVSRTEGNIDDSLIGGNASAEGPEGEGTESTVITGVDIVMNHHLQETSFTKEAYKKYIKD 60
Query: 939 YMKINQGKTREQRPEGVN-LL*QELQNKXXXXXXXXXXXXXYGGNMNPNGM 1088
YMK +GK EQRPE V + + G NMNP+GM
Sbjct: 61 YMKSIKGKLEEQRPERVKPFMTGAAEQIKHILANFKNYQFFIGENMNPDGM 111
>ref|XP_854430.1| PREDICTED: similar to Neuromedin-B receptor (NMB-R)
(Neuromedin-B-preferring bombesin receptor) [Canis
familiaris].
Length = 513
Score = 60.8 bits (146), Expect = 2e-09
Identities = 38/98 (38%), Positives = 46/98 (46%)
Frame = -3
Query: 914 FLCEAGFLQVMVHDNIDTSDYCAFGTFALGPFSGGISTNERVINVTLCPTDHLPLHLQTQ 735
F CE G LQV+V DNI+T D C TF GP S + L +
Sbjct: 4 FFCEFGLLQVIVRDNINTRDDCVLDTFPPGPSVKAFSA---------MSGSSVSYWLYSP 54
Query: 734 PVRDLPDLVDVGKHLIMADEVPVDDHDGGWRETTAALA 621
P LIMADEVPVDDHD GW+E+ ++ A
Sbjct: 55 PSPGT-------TQLIMADEVPVDDHDNGWKESMSSRA 85
Database: RefSeq44_CP.fasta
Posted date: Nov 15, 2010 4:36 PM
Number of letters in database: 18,921,627
Number of sequences in database: 33,359
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33359
Number of Hits to DB: 37,083,308
Number of extensions: 863429
Number of successful extensions: 2590
Number of sequences better than 1.0e-05: 8
Number of HSP's gapped: 2585
Number of HSP's successfully gapped: 10
Length of query: 363
Length of database: 18,921,627
Length adjustment: 104
Effective length of query: 259
Effective length of database: 15,452,291
Effective search space: 4002143369
Effective search space used: 4002143369
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel44
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20101001C-000023
(1090 letters)
Database: RefSeq44_HP.fasta
33,950 sequences; 18,324,212 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_003286.1| translationally-controlled tumor protein [Homo ... 208 6e-54
Alignment gi|NP_997305.2| TPT1-like protein [Homo sapiens]. 174 5e-49
>ref|NP_003286.1| translationally-controlled tumor protein [Homo sapiens].
Length = 172
Score = 208 bits (530), Expect = 6e-54
Identities = 110/145 (75%), Positives = 115/145 (79%), Gaps = 1/145 (0%)
Frame = +3
Query: 657 MIIYRDLISHDEMFSDIYKIREIADGLCLEVEGKMVSRTEGNIDDSLIGGNASAEGPEGE 836
MIIYRDLISHDEMFSDIYKIREIADGLCLEVEGKMVSRTEGNIDDSLIGGNASAEGPEGE
Sbjct: 1 MIIYRDLISHDEMFSDIYKIREIADGLCLEVEGKMVSRTEGNIDDSLIGGNASAEGPEGE 60
Query: 837 GTESTVITGVDIVMNHHLQETSFTKEALQKYIKDYMKINQGKTREQRPEGVN-LL*QELQ 1013
GTESTVITGVDIVMNHHLQETSFTKEA +KYIKDYMK +GK EQRPE V + +
Sbjct: 61 GTESTVITGVDIVMNHHLQETSFTKEAYKKYIKDYMKSIKGKLEEQRPERVKPFMTGAAE 120
Query: 1014 NKXXXXXXXXXXXXXYGGNMNPNGM 1088
G NMNP+GM
Sbjct: 121 QIKHILANFKNYQFFIGENMNPDGM 145
>ref|NP_997305.2| TPT1-like protein [Homo sapiens].
Length = 140
Score = 174 bits (442), Expect(2) = 5e-49
Identities = 91/112 (81%), Positives = 96/112 (85%)
Frame = +3
Query: 654 IMIIYRDLISHDEMFSDIYKIREIADGLCLEVEGKMVSRTEGNIDDSLIGGNASAEGPEG 833
IMIIY DLISH EMFSD Y +EIADGL LEVEGK+VSRTEGNI DSLIGGNASAEGPEG
Sbjct: 5 IMIIYWDLISHSEMFSDSYMSQEIADGLRLEVEGKIVSRTEGNIFDSLIGGNASAEGPEG 64
Query: 834 EGTESTVITGVDIVMNHHLQETSFTKEALQKYIKDYMKINQGKTREQRPEGV 989
+GTESTVITGVD VMNHHLQETSFTKEA K IKDYMK +GK EQRP+ V
Sbjct: 65 KGTESTVITGVDSVMNHHLQETSFTKEAYNKCIKDYMKSIKGKLEEQRPKRV 116
Score = 39.3 bits (90), Expect(2) = 5e-49
Identities = 17/19 (89%), Positives = 19/19 (100%)
Frame = +2
Query: 989 KPFMTGAAKQIQHILANFK 1045
KPFMTGAA+QI+HILANFK
Sbjct: 117 KPFMTGAAEQIKHILANFK 135
Database: RefSeq44_HP.fasta
Posted date: Nov 15, 2010 4:36 PM
Number of letters in database: 18,324,212
Number of sequences in database: 33,950
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33950
Number of Hits to DB: 36,711,564
Number of extensions: 868762
Number of successful extensions: 2781
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 2773
Number of HSP's successfully gapped: 3
Length of query: 363
Length of database: 18,324,212
Length adjustment: 104
Effective length of query: 259
Effective length of database: 14,793,412
Effective search space: 3831493708
Effective search space used: 3831493708
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel44
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20101001C-000023
(1090 letters)
Database: RefSeq44_MP.fasta
29,866 sequences; 15,452,059 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_033455.1| translationally-controlled tumor protein [Mus m... 202 3e-52
>ref|NP_033455.1| translationally-controlled tumor protein [Mus musculus].
Length = 172
Score = 202 bits (515), Expect = 3e-52
Identities = 106/145 (73%), Positives = 114/145 (78%), Gaps = 1/145 (0%)
Frame = +3
Query: 657 MIIYRDLISHDEMFSDIYKIREIADGLCLEVEGKMVSRTEGNIDDSLIGGNASAEGPEGE 836
MIIYRDLISHDE+FSDIYKIREIADGLCLEVEGKMVSRTEG IDDSLIGGNASAEGPEGE
Sbjct: 1 MIIYRDLISHDELFSDIYKIREIADGLCLEVEGKMVSRTEGAIDDSLIGGNASAEGPEGE 60
Query: 837 GTESTVITGVDIVMNHHLQETSFTKEALQKYIKDYMKINQGKTREQRPEGVN-LL*QELQ 1013
GTESTV+TGVDIVMNHHLQETSFTKEA +KYIKDYMK +GK EQ+PE V + +
Sbjct: 61 GTESTVVTGVDIVMNHHLQETSFTKEAYKKYIKDYMKSLKGKLEEQKPERVKPFMTGAAE 120
Query: 1014 NKXXXXXXXXXXXXXYGGNMNPNGM 1088
G NMNP+GM
Sbjct: 121 QIKHILANFNNYQFFIGENMNPDGM 145
Database: RefSeq44_MP.fasta
Posted date: Nov 15, 2010 4:36 PM
Number of letters in database: 15,452,059
Number of sequences in database: 29,866
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 29866
Number of Hits to DB: 30,891,957
Number of extensions: 722727
Number of successful extensions: 2124
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 2121
Number of HSP's successfully gapped: 1
Length of query: 363
Length of database: 15,452,059
Length adjustment: 103
Effective length of query: 260
Effective length of database: 12,375,861
Effective search space: 3217723860
Effective search space used: 3217723860
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)
Search to RefSeqSP_Rel44
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20101001C-000023
(1090 letters)
Database: RefSeq44_SP.fasta
20,576 sequences; 9,542,844 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_999538.1| translationally-controlled tumor protein [Sus s... 208 3e-54
>ref|NP_999538.1| translationally-controlled tumor protein [Sus scrofa].
Length = 172
Score = 208 bits (530), Expect = 3e-54
Identities = 110/145 (75%), Positives = 115/145 (79%), Gaps = 1/145 (0%)
Frame = +3
Query: 657 MIIYRDLISHDEMFSDIYKIREIADGLCLEVEGKMVSRTEGNIDDSLIGGNASAEGPEGE 836
MIIYRDLISHDEMFSDIYKIREIADGLCLEVEGKMVSRTEGNIDDSLIGGNASAEGPEGE
Sbjct: 1 MIIYRDLISHDEMFSDIYKIREIADGLCLEVEGKMVSRTEGNIDDSLIGGNASAEGPEGE 60
Query: 837 GTESTVITGVDIVMNHHLQETSFTKEALQKYIKDYMKINQGKTREQRPEGVN-LL*QELQ 1013
GTESTVITGVDIVMNHHLQETSFTKEA +KYIKDYMK +GK EQRPE V + +
Sbjct: 61 GTESTVITGVDIVMNHHLQETSFTKEAYKKYIKDYMKSIKGKLEEQRPERVKPFMTGAAE 120
Query: 1014 NKXXXXXXXXXXXXXYGGNMNPNGM 1088
G NMNP+GM
Sbjct: 121 QIKHILANFKNYQFFIGENMNPDGM 145
Database: RefSeq44_SP.fasta
Posted date: Nov 15, 2010 4:36 PM
Number of letters in database: 9,542,844
Number of sequences in database: 20,576
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 20576
Number of Hits to DB: 19,224,261
Number of extensions: 452653
Number of successful extensions: 1431
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 1430
Number of HSP's successfully gapped: 1
Length of query: 363
Length of database: 9,542,844
Length adjustment: 99
Effective length of query: 264
Effective length of database: 7,505,820
Effective search space: 1981536480
Effective search space used: 1981536480
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)