Search to RefSeqBP_Rel44
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20101001C-001929
(1116 letters)
Database: RefSeq44_BP.fasta
33,615 sequences; 18,071,151 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_002697254.1| PREDICTED: hypothetical protein [Bos taurus]. 469 e-132
Alignment gi|XP_876296.3| PREDICTED: hypothetical protein [Bos taurus]. 469 e-132
>ref|XP_002697254.1| PREDICTED: hypothetical protein [Bos taurus].
Length = 348
Score = 469 bits (1206), Expect = e-132
Identities = 225/276 (81%), Positives = 237/276 (85%)
Frame = +2
Query: 221 MDLAANELSIYDKLSETVDLVRQTGHQCGMSEKAIEKFIRQLLEKNEPQRGPPQYPVLLA 400
MDLAANELSIYDKLSETVDLVRQTGHQCGMSEKAIEKFIRQLLEKNEPQRGPPQYP+LLA
Sbjct: 1 MDLAANELSIYDKLSETVDLVRQTGHQCGMSEKAIEKFIRQLLEKNEPQRGPPQYPLLLA 60
Query: 401 VYKVLITLGLILLTAYFVIQPFSSLPPEPVLSGAHTWRSLIHHIRLMSLPITKKYMPENK 580
+YKV ITLGLILLTAYFV+QPFS L PEPVLSGA+TWRSLIHHIRLMSLPITKKYMPENK
Sbjct: 61 MYKVFITLGLILLTAYFVVQPFSPLAPEPVLSGAYTWRSLIHHIRLMSLPITKKYMPENK 120
Query: 581 GVPLHGGDEDRPFPDFDPWWTNDCEQNESDPIPANCTGCTQKLPLKVMLLEDTPVKFERL 760
GVPL GG EDRPFPDFDPWWTNDCEQNESDP PANCTGC QKLPL+VMLLEDTP +FERL
Sbjct: 121 GVPLRGGKEDRPFPDFDPWWTNDCEQNESDPTPANCTGCAQKLPLQVMLLEDTPRRFERL 180
Query: 761 HPLVIKTGQPLSSEELQQFLCQYPEVTEGFTEEFFAKWWRCXXXXXXXXXXXXXXXLNRS 940
HPLVIKTGQ LS+E LQ FLCQYPEVTEGFTE FF KWWRC LNRS
Sbjct: 181 HPLVIKTGQSLSTEGLQDFLCQYPEVTEGFTEGFFTKWWRCFPGRWFPFPYPWRRPLNRS 240
Query: 941 HILRELFPVFTFLPFPKDASLKSASFFHRNLLRGSR 1048
HIL ELFP+FT+LPFPK+ASLK + GS+
Sbjct: 241 HILHELFPIFTYLPFPKEASLKKCFLLQPEPIVGSK 276
Score = 67.4 bits (163), Expect = 2e-11
Identities = 30/43 (69%), Positives = 34/43 (79%)
Frame = +1
Query: 988 KRRLLEKCFLLSPEPIAGE*MHRMHDLFTLRSGKGMLQLIPPF 1116
K L+KCFLL PEPI G MHRMHDLFT+ SG+ MLQL+PPF
Sbjct: 257 KEASLKKCFLLQPEPIVGSKMHRMHDLFTIGSGEAMLQLLPPF 299
>ref|XP_876296.3| PREDICTED: hypothetical protein [Bos taurus].
Length = 348
Score = 469 bits (1206), Expect = e-132
Identities = 225/276 (81%), Positives = 237/276 (85%)
Frame = +2
Query: 221 MDLAANELSIYDKLSETVDLVRQTGHQCGMSEKAIEKFIRQLLEKNEPQRGPPQYPVLLA 400
MDLAANELSIYDKLSETVDLVRQTGHQCGMSEKAIEKFIRQLLEKNEPQRGPPQYP+LLA
Sbjct: 1 MDLAANELSIYDKLSETVDLVRQTGHQCGMSEKAIEKFIRQLLEKNEPQRGPPQYPLLLA 60
Query: 401 VYKVLITLGLILLTAYFVIQPFSSLPPEPVLSGAHTWRSLIHHIRLMSLPITKKYMPENK 580
+YKV ITLGLILLTAYFV+QPFS L PEPVLSGA+TWRSLIHHIRLMSLPITKKYMPENK
Sbjct: 61 MYKVFITLGLILLTAYFVVQPFSPLAPEPVLSGAYTWRSLIHHIRLMSLPITKKYMPENK 120
Query: 581 GVPLHGGDEDRPFPDFDPWWTNDCEQNESDPIPANCTGCTQKLPLKVMLLEDTPVKFERL 760
GVPL GG EDRPFPDFDPWWTNDCEQNESDP PANCTGC QKLPL+VMLLEDTP +FERL
Sbjct: 121 GVPLRGGKEDRPFPDFDPWWTNDCEQNESDPTPANCTGCAQKLPLQVMLLEDTPRRFERL 180
Query: 761 HPLVIKTGQPLSSEELQQFLCQYPEVTEGFTEEFFAKWWRCXXXXXXXXXXXXXXXLNRS 940
HPLVIKTGQ LS+E LQ FLCQYPEVTEGFTE FF KWWRC LNRS
Sbjct: 181 HPLVIKTGQSLSTEGLQDFLCQYPEVTEGFTEGFFTKWWRCFPGRWFPFPYPWRRPLNRS 240
Query: 941 HILRELFPVFTFLPFPKDASLKSASFFHRNLLRGSR 1048
HIL ELFP+FT+LPFPK+ASLK + GS+
Sbjct: 241 HILHELFPIFTYLPFPKEASLKKCFLLQPEPIVGSK 276
Score = 67.4 bits (163), Expect = 2e-11
Identities = 30/43 (69%), Positives = 34/43 (79%)
Frame = +1
Query: 988 KRRLLEKCFLLSPEPIAGE*MHRMHDLFTLRSGKGMLQLIPPF 1116
K L+KCFLL PEPI G MHRMHDLFT+ SG+ MLQL+PPF
Sbjct: 257 KEASLKKCFLLQPEPIVGSKMHRMHDLFTIGSGEAMLQLLPPF 299
Database: RefSeq44_BP.fasta
Posted date: Nov 15, 2010 4:36 PM
Number of letters in database: 18,071,151
Number of sequences in database: 33,615
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33615
Number of Hits to DB: 45,171,867
Number of extensions: 1244182
Number of successful extensions: 3639
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 3636
Number of HSP's successfully gapped: 4
Length of query: 372
Length of database: 18,071,151
Length adjustment: 104
Effective length of query: 268
Effective length of database: 14,575,191
Effective search space: 3906151188
Effective search space used: 3906151188
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqCP_Rel44
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20101001C-001929
(1116 letters)
Database: RefSeq44_CP.fasta
33,359 sequences; 18,921,627 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_532127.1| PREDICTED: similar to cDNA sequence BC004004 is... 475 e-134
Alignment gi|XP_864615.1| PREDICTED: similar to cDNA sequence BC004004 is... 111 1e-24
>ref|XP_532127.1| PREDICTED: similar to cDNA sequence BC004004 isoform 1 [Canis
familiaris].
Length = 346
Score = 475 bits (1222), Expect = e-134
Identities = 229/276 (82%), Positives = 237/276 (85%)
Frame = +2
Query: 221 MDLAANELSIYDKLSETVDLVRQTGHQCGMSEKAIEKFIRQLLEKNEPQRGPPQYPVLLA 400
MDLAANELSIYDKLSETVDLVRQTGHQCGMSEKAIEKFIRQLLEKNEPQRGPPQYP+L+A
Sbjct: 1 MDLAANELSIYDKLSETVDLVRQTGHQCGMSEKAIEKFIRQLLEKNEPQRGPPQYPLLIA 60
Query: 401 VYKVLITLGLILLTAYFVIQPFSSLPPEPVLSGAHTWRSLIHHIRLMSLPITKKYMPENK 580
+YKVL+TLGLILLTAYFVIQPFS LPPEPVLSGAHTWRSLIHHIRLMSLPI KKYMPENK
Sbjct: 61 IYKVLVTLGLILLTAYFVIQPFSPLPPEPVLSGAHTWRSLIHHIRLMSLPIAKKYMPENK 120
Query: 581 GVPLHGGDEDRPFPDFDPWWTNDCEQNESDPIPANCTGCTQKLPLKVMLLEDTPVKFERL 760
GVPLHGGDEDR FPDFDPWWTN CEQNES+PIPANCTGC QKLPLKVMLLEDTP KFER
Sbjct: 121 GVPLHGGDEDRLFPDFDPWWTNSCEQNESNPIPANCTGCAQKLPLKVMLLEDTPKKFERF 180
Query: 761 HPLVIKTGQPLSSEELQQFLCQYPEVTEGFTEEFFAKWWRCXXXXXXXXXXXXXXXLNRS 940
HPLVIKTGQ L SEELQ FLC YPEVTEGF E FF KWWRC LNRS
Sbjct: 181 HPLVIKTGQLLLSEELQHFLCWYPEVTEGFNEGFFTKWWRCFPERWFPFPYPWRRPLNRS 240
Query: 941 HILRELFPVFTFLPFPKDASLKSASFFHRNLLRGSR 1048
HILRELFPVFT+LPFPKDASLK + GS+
Sbjct: 241 HILRELFPVFTYLPFPKDASLKKCFLLQPEPIVGSK 276
Score = 61.2 bits (147), Expect = 2e-09
Identities = 27/38 (71%), Positives = 30/38 (78%)
Frame = +1
Query: 1000 LEKCFLLSPEPIAGE*MHRMHDLFTLRSGKGMLQLIPP 1113
L+KCFLL PEPI G MHRMHDLF + SG+ MLQ IPP
Sbjct: 261 LKKCFLLQPEPIVGSKMHRMHDLFIIGSGEAMLQFIPP 298
>ref|XP_864615.1| PREDICTED: similar to cDNA sequence BC004004 isoform 2 [Canis
familiaris].
Length = 167
Score = 111 bits (278), Expect = 1e-24
Identities = 55/91 (60%), Positives = 59/91 (64%)
Frame = +2
Query: 776 KTGQPLSSEELQQFLCQYPEVTEGFTEEFFAKWWRCXXXXXXXXXXXXXXXLNRSHILRE 955
+TGQ L SEELQ FLC YPEVTEGF E FF KWWRC LNRSHILRE
Sbjct: 7 QTGQLLLSEELQHFLCWYPEVTEGFNEGFFTKWWRCFPERWFPFPYPWRRPLNRSHILRE 66
Query: 956 LFPVFTFLPFPKDASLKSASFFHRNLLRGSR 1048
LFPVFT+LPFPKDASLK + GS+
Sbjct: 67 LFPVFTYLPFPKDASLKKCFLLQPEPIVGSK 97
Score = 61.2 bits (147), Expect = 2e-09
Identities = 27/38 (71%), Positives = 30/38 (78%)
Frame = +1
Query: 1000 LEKCFLLSPEPIAGE*MHRMHDLFTLRSGKGMLQLIPP 1113
L+KCFLL PEPI G MHRMHDLF + SG+ MLQ IPP
Sbjct: 82 LKKCFLLQPEPIVGSKMHRMHDLFIIGSGEAMLQFIPP 119
Database: RefSeq44_CP.fasta
Posted date: Nov 15, 2010 4:36 PM
Number of letters in database: 18,921,627
Number of sequences in database: 33,359
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33359
Number of Hits to DB: 46,176,452
Number of extensions: 1256956
Number of successful extensions: 3464
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 3464
Number of HSP's successfully gapped: 4
Length of query: 372
Length of database: 18,921,627
Length adjustment: 104
Effective length of query: 268
Effective length of database: 15,452,291
Effective search space: 4141213988
Effective search space used: 4141213988
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel44
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20101001C-001929
(1116 letters)
Database: RefSeq44_HP.fasta
33,950 sequences; 18,324,212 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_689947.2| hypothetical protein LOC221477 [Homo sapiens]. 470 e-132
>ref|NP_689947.2| hypothetical protein LOC221477 [Homo sapiens].
Length = 354
Score = 470 bits (1209), Expect = e-132
Identities = 228/282 (80%), Positives = 239/282 (84%)
Frame = +2
Query: 203 DFVLGDMDLAANELSIYDKLSETVDLVRQTGHQCGMSEKAIEKFIRQLLEKNEPQRGPPQ 382
DF+L DMDLAANE+SIYDKLSETVDLVRQTGHQCGMSEKAIEKFIRQLLEKNEPQR PPQ
Sbjct: 2 DFILEDMDLAANEISIYDKLSETVDLVRQTGHQCGMSEKAIEKFIRQLLEKNEPQRPPPQ 61
Query: 383 YPVLLAVYKVLITLGLILLTAYFVIQPFSSLPPEPVLSGAHTWRSLIHHIRLMSLPITKK 562
YP+L+ VYKVL TLGLILLTAYFVIQPFS L PEPVLSGAHTWRSLIHHIRLMSLPI KK
Sbjct: 62 YPLLIVVYKVLATLGLILLTAYFVIQPFSPLAPEPVLSGAHTWRSLIHHIRLMSLPIAKK 121
Query: 563 YMPENKGVPLHGGDEDRPFPDFDPWWTNDCEQNESDPIPANCTGCTQKLPLKVMLLEDTP 742
YM ENKGVPLHGGDEDRPFPDFDPWWTNDCEQNES+PIPANCTGC QK LKVMLLED P
Sbjct: 122 YMSENKGVPLHGGDEDRPFPDFDPWWTNDCEQNESEPIPANCTGCAQK-HLKVMLLEDAP 180
Query: 743 VKFERLHPLVIKTGQPLSSEELQQFLCQYPEVTEGFTEEFFAKWWRCXXXXXXXXXXXXX 922
KFERLHPLVIKTG+PL EE+Q FLCQYPE TEGF+E FFAKWWRC
Sbjct: 181 RKFERLHPLVIKTGKPLLEEEIQHFLCQYPEATEGFSEGFFAKWWRCFPERWFPFPYPWR 240
Query: 923 XXLNRSHILRELFPVFTFLPFPKDASLKSASFFHRNLLRGSR 1048
LNRS +LRELFPVFT LPFPKDASL SF H + GS+
Sbjct: 241 RPLNRSQMLRELFPVFTHLPFPKDASLNKCSFLHPEPVVGSK 282
Score = 56.2 bits (134), Expect = 5e-08
Identities = 28/49 (57%), Positives = 32/49 (65%)
Frame = +1
Query: 970 HLPAVSKRRLLEKCFLLSPEPIAGE*MHRMHDLFTLRSGKGMLQLIPPF 1116
HLP K L KC L PEP+ G MH+M DLF + SG+ MLQLIPPF
Sbjct: 258 HLP-FPKDASLNKCSFLHPEPVVGSKMHKMPDLFIIGSGEAMLQLIPPF 305
Database: RefSeq44_HP.fasta
Posted date: Nov 15, 2010 4:36 PM
Number of letters in database: 18,324,212
Number of sequences in database: 33,950
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33950
Number of Hits to DB: 45,527,949
Number of extensions: 1245240
Number of successful extensions: 3692
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 3689
Number of HSP's successfully gapped: 2
Length of query: 372
Length of database: 18,324,212
Length adjustment: 104
Effective length of query: 268
Effective length of database: 14,793,412
Effective search space: 3964634416
Effective search space used: 3964634416
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel44
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20101001C-001929
(1116 letters)
Database: RefSeq44_MP.fasta
29,866 sequences; 15,452,059 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_085038.3| hypothetical protein LOC80748 [Mus musculus]. 438 e-123
>ref|NP_085038.3| hypothetical protein LOC80748 [Mus musculus].
Length = 348
Score = 438 bits (1126), Expect = e-123
Identities = 213/276 (77%), Positives = 229/276 (82%)
Frame = +2
Query: 221 MDLAANELSIYDKLSETVDLVRQTGHQCGMSEKAIEKFIRQLLEKNEPQRGPPQYPVLLA 400
MDLAANE+SIYDKLSETVDLVRQTGHQCGMSEKAIEKFIRQLLEKNEPQRGPPQYP+L+A
Sbjct: 1 MDLAANEISIYDKLSETVDLVRQTGHQCGMSEKAIEKFIRQLLEKNEPQRGPPQYPLLIA 60
Query: 401 VYKVLITLGLILLTAYFVIQPFSSLPPEPVLSGAHTWRSLIHHIRLMSLPITKKYMPENK 580
VYKVL+TLGLIL TAYFVIQPFSSL PEPVLSGA++WRSL+HHIRL+SLPITKKYMPENK
Sbjct: 61 VYKVLLTLGLILFTAYFVIQPFSSLAPEPVLSGANSWRSLVHHIRLVSLPITKKYMPENK 120
Query: 581 GVPLHGGDEDRPFPDFDPWWTNDCEQNESDPIPANCTGCTQKLPLKVMLLEDTPVKFERL 760
GVPL G ED+PFPDFDPW + +CEQNES+PIPANCTGC Q LPLKV L EDTP FERL
Sbjct: 121 GVPLQGSQEDKPFPDFDPWSSYNCEQNESEPIPANCTGCAQILPLKVTLPEDTPKNFERL 180
Query: 761 HPLVIKTGQPLSSEELQQFLCQYPEVTEGFTEEFFAKWWRCXXXXXXXXXXXXXXXLNRS 940
PLVIKTGQPLSS E+Q F CQYPEVTEGFTE FF KWWRC LNRS
Sbjct: 181 RPLVIKTGQPLSSAEIQSFSCQYPEVTEGFTEGFFTKWWRCFPERWFPFPYPWRRPLNRS 240
Query: 941 HILRELFPVFTFLPFPKDASLKSASFFHRNLLRGSR 1048
ILRELFPVFT LPFPKD+SL + GS+
Sbjct: 241 QILRELFPVFTQLPFPKDSSLNKCFLIQPEPVVGSK 276
Score = 63.9 bits (154), Expect = 2e-10
Identities = 27/39 (69%), Positives = 32/39 (82%)
Frame = +1
Query: 1000 LEKCFLLSPEPIAGE*MHRMHDLFTLRSGKGMLQLIPPF 1116
L KCFL+ PEP+ G MH++HDLFTL SG+ MLQLIPPF
Sbjct: 261 LNKCFLIQPEPVVGSKMHKVHDLFTLGSGEAMLQLIPPF 299
Database: RefSeq44_MP.fasta
Posted date: Nov 15, 2010 4:36 PM
Number of letters in database: 15,452,059
Number of sequences in database: 29,866
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 29866
Number of Hits to DB: 38,047,286
Number of extensions: 1032543
Number of successful extensions: 3015
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 3014
Number of HSP's successfully gapped: 2
Length of query: 372
Length of database: 15,452,059
Length adjustment: 103
Effective length of query: 269
Effective length of database: 12,375,861
Effective search space: 3329106609
Effective search space used: 3329106609
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel44
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20101001C-001929
(1116 letters)
Database: RefSeq44_SP.fasta
20,576 sequences; 9,542,844 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003128415.1| PREDICTED: uncharacterized protein C6orf89 h... 526 e-150
Alignment gi|XP_001929602.1| PREDICTED: uncharacterized protein C6orf89 h... 514 e-146
>ref|XP_003128415.1| PREDICTED: uncharacterized protein C6orf89 homolog isoform 2 [Sus
scrofa].
Length = 355
Score = 526 bits (1356), Expect = e-150
Identities = 255/282 (90%), Positives = 257/282 (91%)
Frame = +2
Query: 203 DFVLGDMDLAANELSIYDKLSETVDLVRQTGHQCGMSEKAIEKFIRQLLEKNEPQRGPPQ 382
DFVLGDMDLAANELSIYDKLSETVDLVRQTGHQCGMSEKAIEKFIRQLLEKNEPQRGPPQ
Sbjct: 2 DFVLGDMDLAANELSIYDKLSETVDLVRQTGHQCGMSEKAIEKFIRQLLEKNEPQRGPPQ 61
Query: 383 YPVLLAVYKVLITLGLILLTAYFVIQPFSSLPPEPVLSGAHTWRSLIHHIRLMSLPITKK 562
YPVLLAVYKVLITLGLILLTAYFVIQPFSSLPPEPVLSGAHTWRSLIHHIRLMSLPITKK
Sbjct: 62 YPVLLAVYKVLITLGLILLTAYFVIQPFSSLPPEPVLSGAHTWRSLIHHIRLMSLPITKK 121
Query: 563 YMPENKGVPLHGGDEDRPFPDFDPWWTNDCEQNESDPIPANCTGCTQKLPLKVMLLEDTP 742
YMPENKGVPLHGGDEDRPFPDFDPWWTNDCEQNESDPIPANCTGCTQKLPLKVMLLEDTP
Sbjct: 122 YMPENKGVPLHGGDEDRPFPDFDPWWTNDCEQNESDPIPANCTGCTQKLPLKVMLLEDTP 181
Query: 743 VKFERLHPLVIKTGQPLSSEELQQFLCQYPEVTEGFTEEFFAKWWRCXXXXXXXXXXXXX 922
VKFERLHPLVIKTGQPLSSEELQQFLCQYPEVTEGFTEEFFAKWWRC
Sbjct: 182 VKFERLHPLVIKTGQPLSSEELQQFLCQYPEVTEGFTEEFFAKWWRCFPHRWFPFPYPWR 241
Query: 923 XXLNRSHILRELFPVFTFLPFPKDASLKSASFFHRNLLRGSR 1048
LNRSHILRELFPVFTFLPFPKDASLK + GS+
Sbjct: 242 RPLNRSHILRELFPVFTFLPFPKDASLKKCFLLQPEPIAGSK 283
Score = 68.9 bits (167), Expect = 4e-12
Identities = 31/39 (79%), Positives = 34/39 (87%)
Frame = +1
Query: 1000 LEKCFLLSPEPIAGE*MHRMHDLFTLRSGKGMLQLIPPF 1116
L+KCFLL PEPIAG MHRMHDLFT+ SG+ MLQLIPPF
Sbjct: 268 LKKCFLLQPEPIAGSKMHRMHDLFTIGSGEAMLQLIPPF 306
>ref|XP_001929602.1| PREDICTED: uncharacterized protein C6orf89 homolog isoform 1 [Sus
scrofa].
Length = 348
Score = 514 bits (1324), Expect = e-146
Identities = 249/276 (90%), Positives = 251/276 (90%)
Frame = +2
Query: 221 MDLAANELSIYDKLSETVDLVRQTGHQCGMSEKAIEKFIRQLLEKNEPQRGPPQYPVLLA 400
MDLAANELSIYDKLSETVDLVRQTGHQCGMSEKAIEKFIRQLLEKNEPQRGPPQYPVLLA
Sbjct: 1 MDLAANELSIYDKLSETVDLVRQTGHQCGMSEKAIEKFIRQLLEKNEPQRGPPQYPVLLA 60
Query: 401 VYKVLITLGLILLTAYFVIQPFSSLPPEPVLSGAHTWRSLIHHIRLMSLPITKKYMPENK 580
VYKVLITLGLILLTAYFVIQPFSSLPPEPVLSGAHTWRSLIHHIRLMSLPITKKYMPENK
Sbjct: 61 VYKVLITLGLILLTAYFVIQPFSSLPPEPVLSGAHTWRSLIHHIRLMSLPITKKYMPENK 120
Query: 581 GVPLHGGDEDRPFPDFDPWWTNDCEQNESDPIPANCTGCTQKLPLKVMLLEDTPVKFERL 760
GVPLHGGDEDRPFPDFDPWWTNDCEQNESDPIPANCTGCTQKLPLKVMLLEDTPVKFERL
Sbjct: 121 GVPLHGGDEDRPFPDFDPWWTNDCEQNESDPIPANCTGCTQKLPLKVMLLEDTPVKFERL 180
Query: 761 HPLVIKTGQPLSSEELQQFLCQYPEVTEGFTEEFFAKWWRCXXXXXXXXXXXXXXXLNRS 940
HPLVIKTGQPLSSEELQQFLCQYPEVTEGFTEEFFAKWWRC LNRS
Sbjct: 181 HPLVIKTGQPLSSEELQQFLCQYPEVTEGFTEEFFAKWWRCFPHRWFPFPYPWRRPLNRS 240
Query: 941 HILRELFPVFTFLPFPKDASLKSASFFHRNLLRGSR 1048
HILRELFPVFTFLPFPKDASLK + GS+
Sbjct: 241 HILRELFPVFTFLPFPKDASLKKCFLLQPEPIAGSK 276
Score = 68.9 bits (167), Expect = 4e-12
Identities = 31/39 (79%), Positives = 34/39 (87%)
Frame = +1
Query: 1000 LEKCFLLSPEPIAGE*MHRMHDLFTLRSGKGMLQLIPPF 1116
L+KCFLL PEPIAG MHRMHDLFT+ SG+ MLQLIPPF
Sbjct: 261 LKKCFLLQPEPIAGSKMHRMHDLFTIGSGEAMLQLIPPF 299
Database: RefSeq44_SP.fasta
Posted date: Nov 15, 2010 4:36 PM
Number of letters in database: 9,542,844
Number of sequences in database: 20,576
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 20576
Number of Hits to DB: 23,977,451
Number of extensions: 660418
Number of successful extensions: 1835
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 1835
Number of HSP's successfully gapped: 4
Length of query: 372
Length of database: 9,542,844
Length adjustment: 99
Effective length of query: 273
Effective length of database: 7,505,820
Effective search space: 2049088860
Effective search space used: 2049088860
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)