Search to RefSeqBP_Rel44
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20101001C-002279
(1268 letters)
Database: RefSeq44_BP.fasta
33,615 sequences; 18,071,151 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001030503.1| secretory carrier-associated membrane protei... 452 e-127
Alignment gi|NP_001069522.1| secretory carrier-associated membrane protei... 223 3e-58
Alignment gi|NP_001095640.1| secretory carrier-associated membrane protei... 219 4e-57
Alignment gi|NP_001160037.1| secretory carrier-associated membrane protei... 157 2e-38
Alignment gi|NP_001019737.1| secretory carrier-associated membrane protei... 154 2e-37
>ref|NP_001030503.1| secretory carrier-associated membrane protein 3 [Bos taurus].
Length = 347
Score = 452 bits (1164), Expect = e-127
Identities = 232/342 (67%), Positives = 240/342 (70%)
Frame = +2
Query: 233 DGGNPFAEPGELDNPFQDPAVIQHRPSPQYATLDVYNPFETRXXXXXXXXXXXXXXXXXX 412
DGGNPFAEPGELDNPFQDPAVIQHRPS YATLDVYNPFETR
Sbjct: 6 DGGNPFAEPGELDNPFQDPAVIQHRPSTHYATLDVYNPFETREPPPSYEPPAPVPIAPPS 65
Query: 413 XXXLQSSRKLSPTEPKNYGSYXXXXXXXXXXXXXXXXXXELNRKAEELDRRERELQHAAL 592
LQSSRKLSPTEPKNYGSY ELNRKAEELDRREREL+HAAL
Sbjct: 66 APPLQSSRKLSPTEPKNYGSYSTQASTAAATAELLKKQEELNRKAEELDRRERELRHAAL 125
Query: 593 GGTATRQNNWPPLPSFCPVQPCFFQDISMEIPQEFQKTVSTMYYLWMCSTXXXXXXXXXX 772
G TATRQNNWPPLPSFCPVQPCFFQDISMEIPQEFQKTVSTMYYLWMCST
Sbjct: 126 GSTATRQNNWPPLPSFCPVQPCFFQDISMEIPQEFQKTVSTMYYLWMCSTLALLLNFLAC 185
Query: 773 XXSFCVETNTGSGFGLSILWILLFTPCSFVCWYRPMYKAXXXXXXXXXXXXXXXXXVQDV 952
SFCVET+ GSGFGLSILWILLFTPCSFVCWYRPMYKA VQDV
Sbjct: 186 LASFCVETSNGSGFGLSILWILLFTPCSFVCWYRPMYKAFRSDSSFNFFVFFFIFFVQDV 245
Query: 953 LYVLQAIGIPGWGFSGWISALMLVNTTRXXXXXXXXXXXXXTGIAVLGIVMLKRIHSLYR 1132
L+VLQAIGIPGWGFSGWISAL+++ TGIAVLGIVMLKRIHSLYR
Sbjct: 246 LFVLQAIGIPGWGFSGWISALVVLKVNTAVAVLMLLVALFFTGIAVLGIVMLKRIHSLYR 305
Query: 1133 RTGASFQKAQQEFAGGGLLHPAGRNATANEPPGPAKYAFGAP 1258
RTGASFQKAQQEFA G +PA R A AN G A+ AF AP
Sbjct: 306 RTGASFQKAQQEFAAGVFSNPAVRTAAANAAAGAAENAFRAP 347
>ref|NP_001069522.1| secretory carrier-associated membrane protein 1 [Bos taurus].
Length = 354
Score = 223 bits (568), Expect = 3e-58
Identities = 137/328 (41%), Positives = 167/328 (50%), Gaps = 2/328 (0%)
Frame = +2
Query: 242 NPFAEPGELDNPFQDPAVIQ-HRPSPQYATLDVYNPFETRXXXXXXXXXXXXXXXXXXXX 418
NPFA+P +L+NPF+DP+V Q R P LD YNPF
Sbjct: 7 NPFADP-DLNNPFKDPSVTQVTRNVPP--GLDEYNPFSDSRTPPPGNVKMPNVPSTQPAI 63
Query: 419 XLQSSRKLSPTEPKNYGSYXXXXXXXXXXXXXXXXXXE-LNRKAEELDRRERELQHAALG 595
+ PTE + +Y E L RKA ELDRRERE+Q+ +
Sbjct: 64 -------MKPTE--EHPAYTQIAKEHALAQAELLKRQEELERKAAELDRREREMQNLSQH 114
Query: 596 GTATRQNNWPPLPSFCPVQPCFFQDISMEIPQEFQKTVSTMYYLWMCSTXXXXXXXXXXX 775
G R+NNWPPLP PV PCF+QD S++IP EFQKTV MYYLWM
Sbjct: 115 G---RKNNWPPLPDNFPVGPCFYQDFSVDIPVEFQKTVKIMYYLWMFHAVTLFLNIFGCL 171
Query: 776 XSFCVETNTGSGFGLSILWILLFTPCSFVCWYRPMYKAXXXXXXXXXXXXXXXXXVQDVL 955
FCV+ G FGLSILW LLFTPCSFVCWYRP+Y A Q +
Sbjct: 172 AWFCVDPPRGVDFGLSILWFLLFTPCSFVCWYRPLYGAFRSDSSFRFFVFFFVYICQFAV 231
Query: 956 YVLQAIGIPGWGFSGWISALMLVNTTRXXXXXXXXXXXXXTGIAVLGIVMLKRIHSLYRR 1135
+VLQA G WG GWIS+L +N + T AV+ +VM K++H LYR
Sbjct: 232 HVLQAAGFHNWGNCGWISSLTGLNKSIPVGIMMIIIAALFTASAVISLVMFKKVHGLYRT 291
Query: 1136 TGASFQKAQQEFAGGGLLHPAGRNATAN 1219
TGASF+KAQQEFA G + + + A AN
Sbjct: 292 TGASFEKAQQEFATGVMSNKTVQTAAAN 319
>ref|NP_001095640.1| secretory carrier-associated membrane protein 2 [Bos taurus].
Length = 328
Score = 219 bits (558), Expect = 4e-57
Identities = 129/330 (39%), Positives = 172/330 (52%)
Frame = +2
Query: 242 NPFAEPGELDNPFQDPAVIQHRPSPQYATLDVYNPFETRXXXXXXXXXXXXXXXXXXXXX 421
NPFA+P ++ NPFQDP+V Q +PQ L +NPF
Sbjct: 7 NPFADPVDV-NPFQDPSVTQLTNAPQ-GGLAEFNPFSETNAATTVPVSQMPGASQPAV-- 62
Query: 422 LQSSRKLSPTEPKNYGSYXXXXXXXXXXXXXXXXXXELNRKAEELDRRERELQHAALGGT 601
LQ S + PT+P EL+RKA EL+R+ERELQ+ +
Sbjct: 63 LQPS--VEPTQPTPQA------VASAAQASLLRQQEELDRKAAELERKERELQNT-VANL 113
Query: 602 ATRQNNWPPLPSFCPVQPCFFQDISMEIPQEFQKTVSTMYYLWMCSTXXXXXXXXXXXXS 781
R+NNWPPLP +CPV+PCF+QD S EIP ++Q+ +YYLWM +
Sbjct: 114 HVRENNWPPLPVWCPVKPCFYQDFSTEIPADYQRICKMLYYLWMLHSVTLFLNLLACLAW 173
Query: 782 FCVETNTGSGFGLSILWILLFTPCSFVCWYRPMYKAXXXXXXXXXXXXXXXXXVQDVLYV 961
F V+T+ G FGLSILW ++FTPC+F+CWYRP+YKA Q +Y+
Sbjct: 174 FLVDTSRGVDFGLSILWFVIFTPCAFLCWYRPIYKAFRSDNSFSFFVFFFVFFCQIGIYI 233
Query: 962 LQAIGIPGWGFSGWISALMLVNTTRXXXXXXXXXXXXXTGIAVLGIVMLKRIHSLYRRTG 1141
+Q IGIP G SGWI+AL + T AVL + +LKR+HSLYRRTG
Sbjct: 234 IQLIGIPSLGDSGWIAALSTMKHNLAVSVIMMVVAGFFTLCAVLSLFLLKRVHSLYRRTG 293
Query: 1142 ASFQKAQQEFAGGGLLHPAGRNATANEPPG 1231
ASFQ+AQ+EF+ G R+A ++ G
Sbjct: 294 ASFQQAQEEFSQGIFSSRTFRSAASSAAQG 323
>ref|NP_001160037.1| secretory carrier-associated membrane protein 5 [Bos taurus].
Length = 235
Score = 157 bits (397), Expect = 2e-38
Identities = 75/216 (34%), Positives = 110/216 (50%)
Frame = +2
Query: 614 NNWPPLPSFCPVQPCFFQDISMEIPQEFQKTVSTMYYLWMCSTXXXXXXXXXXXXSFCVE 793
NN+PPLP F P++PCF+QD +IP + +YYLWM ++ ++ +
Sbjct: 6 NNFPPLPKFIPLKPCFYQDFEADIPPQHLSMTKRLYYLWMLNS-VTLAVNLVGCLAWLIG 64
Query: 794 TNTGSGFGLSILWILLFTPCSFVCWYRPMYKAXXXXXXXXXXXXXXXXXVQDVLYVLQAI 973
+ FGL+ LW++LFTPCS+VCW+RP+YKA Q V+ ++QA+
Sbjct: 65 GGGATNFGLAFLWLILFTPCSYVCWFRPIYKAFKTDSSFSFMAFFFTFMAQLVISIIQAV 124
Query: 974 GIPGWGFSGWISALMLVNTTRXXXXXXXXXXXXXTGIAVLGIVMLKRIHSLYRRTGASFQ 1153
GIPGWG GWI+ + T T +AV + L +H YR +G SF
Sbjct: 125 GIPGWGVCGWIATISFFGTNIGSAVVMLIPTVLFTVMAVFSFIALSMVHKFYRGSGGSFS 184
Query: 1154 KAQQEFAGGGLLHPAGRNATANEPPGPAKYAFGAPE 1261
KAQ+E+ G +P + A N G A+ A P+
Sbjct: 185 KAQEEWTTGAWKNPHVQQAAQNAAMGAAQGAMNQPQ 220
>ref|NP_001019737.1| secretory carrier-associated membrane protein 4 [Bos taurus].
Length = 230
Score = 154 bits (389), Expect = 2e-37
Identities = 77/210 (36%), Positives = 115/210 (54%), Gaps = 2/210 (0%)
Frame = +2
Query: 608 RQNNWPPLPSFCPVQPCFFQDISMEIPQEFQKTVSTMYYLWM--CSTXXXXXXXXXXXXS 781
++NN+PPLP F P++PCF+Q+ S EIP E Q V +Y LW+ C+T +
Sbjct: 4 KENNFPPLPKFIPLKPCFYQNFSDEIPIEHQVLVKRIYRLWLFYCAT---LGVNLVACLA 60
Query: 782 FCVETNTGSGFGLSILWILLFTPCSFVCWYRPMYKAXXXXXXXXXXXXXXXXXVQDVLYV 961
+ + +G+ FGL++LW+LLF+PC +VCW+RP YKA Q +L +
Sbjct: 61 WWIAGGSGANFGLALLWLLLFSPCGYVCWFRPAYKAFRSDSSFNFMAFFFIFGAQFILTI 120
Query: 962 LQAIGIPGWGFSGWISALMLVNTTRXXXXXXXXXXXXXTGIAVLGIVMLKRIHSLYRRTG 1141
+QA+G GWG GW++A+ T+ + A + VM+ ++HS+YR TG
Sbjct: 121 IQAVGFSGWGACGWLAAIGFFQTSVGAAVVMLLPAIMFSMSAAMMAVMIMKVHSIYRGTG 180
Query: 1142 ASFQKAQQEFAGGGLLHPAGRNATANEPPG 1231
SFQKAQ E++ G +P R A N G
Sbjct: 181 GSFQKAQTEWSTGTWRNPPSREAQFNNFSG 210
Database: RefSeq44_BP.fasta
Posted date: Nov 15, 2010 4:36 PM
Number of letters in database: 18,071,151
Number of sequences in database: 33,615
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33615
Number of Hits to DB: 49,077,316
Number of extensions: 1435644
Number of successful extensions: 5645
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 5607
Number of HSP's successfully gapped: 5
Length of query: 422
Length of database: 18,071,151
Length adjustment: 105
Effective length of query: 317
Effective length of database: 14,541,576
Effective search space: 4609679592
Effective search space used: 4609679592
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqCP_Rel44
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20101001C-002279
(1268 letters)
Database: RefSeq44_CP.fasta
33,359 sequences; 18,921,627 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_851948.1| PREDICTED: similar to secretory carrier membran... 453 e-127
Alignment gi|XP_864765.1| PREDICTED: similar to secretory carrier membran... 447 e-125
Alignment gi|XP_864743.1| PREDICTED: similar to secretory carrier membran... 445 e-125
Alignment gi|XP_850806.1| PREDICTED: similar to secretory carrier membran... 429 e-123
Alignment gi|XP_864783.1| PREDICTED: similar to secretory carrier membran... 411 e-115
Alignment gi|XP_864802.1| PREDICTED: similar to secretory carrier membran... 393 e-109
Alignment gi|XP_864724.1| PREDICTED: similar to secretory carrier membran... 249 3e-66
Alignment gi|XP_859726.1| PREDICTED: similar to Secretory carrier-associa... 231 9e-61
Alignment gi|XP_536314.2| PREDICTED: similar to Secretory carrier-associa... 224 1e-58
Alignment gi|XP_544777.2| PREDICTED: similar to Secretory carrier-associa... 222 7e-58
>ref|XP_851948.1| PREDICTED: similar to secretory carrier membrane protein 3 isoform 1
isoform 1 [Canis familiaris].
Length = 347
Score = 453 bits (1165), Expect = e-127
Identities = 232/342 (67%), Positives = 240/342 (70%)
Frame = +2
Query: 233 DGGNPFAEPGELDNPFQDPAVIQHRPSPQYATLDVYNPFETRXXXXXXXXXXXXXXXXXX 412
DG NPFA P ELDNPFQDPAVIQHRPSPQYATLDVYNPFETR
Sbjct: 6 DGENPFAGPSELDNPFQDPAVIQHRPSPQYATLDVYNPFETREPPLAYEPPAPAPLPSPS 65
Query: 413 XXXLQSSRKLSPTEPKNYGSYXXXXXXXXXXXXXXXXXXELNRKAEELDRRERELQHAAL 592
LQSSRKLSPTEPKNYGSY ELNRKAEELDRRERELQHAAL
Sbjct: 66 APSLQSSRKLSPTEPKNYGSYSTQASAAAATAELLKKQEELNRKAEELDRRERELQHAAL 125
Query: 593 GGTATRQNNWPPLPSFCPVQPCFFQDISMEIPQEFQKTVSTMYYLWMCSTXXXXXXXXXX 772
GGTA RQNNWPPLPSFCPVQPCFFQDISMEIPQEFQKTVSTMYYLWMCST
Sbjct: 126 GGTAARQNNWPPLPSFCPVQPCFFQDISMEIPQEFQKTVSTMYYLWMCSTLALLLNFLAC 185
Query: 773 XXSFCVETNTGSGFGLSILWILLFTPCSFVCWYRPMYKAXXXXXXXXXXXXXXXXXVQDV 952
SFCVET+ GSGFGLSILW+LLFTPCSFVCWYRPMYKA VQDV
Sbjct: 186 LASFCVETSNGSGFGLSILWVLLFTPCSFVCWYRPMYKAFRSDSSFNFFVFFFIFFVQDV 245
Query: 953 LYVLQAIGIPGWGFSGWISALMLVNTTRXXXXXXXXXXXXXTGIAVLGIVMLKRIHSLYR 1132
L+VLQAIGIPGWGFSGWISAL+++ T TGIAVLGIVMLKRIHSLYR
Sbjct: 246 LFVLQAIGIPGWGFSGWISALVVLKTNTAVAVLMLLVALLFTGIAVLGIVMLKRIHSLYR 305
Query: 1133 RTGASFQKAQQEFAGGGLLHPAGRNATANEPPGPAKYAFGAP 1258
RTGASFQKAQQEFA G +PA R A AN G A+ AF AP
Sbjct: 306 RTGASFQKAQQEFAAGVFSNPAVRTAAANAAAGAAENAFRAP 347
>ref|XP_864765.1| PREDICTED: similar to secretory carrier membrane protein 3 isoform 1
isoform 4 [Canis familiaris].
Length = 347
Score = 447 bits (1149), Expect = e-125
Identities = 230/342 (67%), Positives = 238/342 (69%)
Frame = +2
Query: 233 DGGNPFAEPGELDNPFQDPAVIQHRPSPQYATLDVYNPFETRXXXXXXXXXXXXXXXXXX 412
DG NPFA P ELDNPFQDPAVIQHRPSPQYATLDVYNPFETR
Sbjct: 6 DGENPFAGPSELDNPFQDPAVIQHRPSPQYATLDVYNPFETREPPLAYEPPAPAPLPSPS 65
Query: 413 XXXLQSSRKLSPTEPKNYGSYXXXXXXXXXXXXXXXXXXELNRKAEELDRRERELQHAAL 592
LQSSRKLSPTEPKNYGSY ELNRKAEELDRRERELQHAAL
Sbjct: 66 APSLQSSRKLSPTEPKNYGSYSTQASAAAATAELLKKQEELNRKAEELDRRERELQHAAL 125
Query: 593 GGTATRQNNWPPLPSFCPVQPCFFQDISMEIPQEFQKTVSTMYYLWMCSTXXXXXXXXXX 772
GGTA RQNNWPPLPSFCPVQPCFFQDISMEIPQEFQKTVSTMYYLWM T
Sbjct: 126 GGTAARQNNWPPLPSFCPVQPCFFQDISMEIPQEFQKTVSTMYYLWMFCTLALLLNFLAC 185
Query: 773 XXSFCVETNTGSGFGLSILWILLFTPCSFVCWYRPMYKAXXXXXXXXXXXXXXXXXVQDV 952
SFCVET+ GSGFGLSILW+LLFTPCSFVCWYRPMYKA VQDV
Sbjct: 186 LASFCVETSNGSGFGLSILWVLLFTPCSFVCWYRPMYKAFRSDSSFNFFVFFFIFFVQDV 245
Query: 953 LYVLQAIGIPGWGFSGWISALMLVNTTRXXXXXXXXXXXXXTGIAVLGIVMLKRIHSLYR 1132
L+VLQAIGIPGWGFSGWISAL+++ T TGIAVLGIVMLKRIHSLYR
Sbjct: 246 LFVLQAIGIPGWGFSGWISALVVLKTNTAVAVLMLLVALLFTGIAVLGIVMLKRIHSLYR 305
Query: 1133 RTGASFQKAQQEFAGGGLLHPAGRNATANEPPGPAKYAFGAP 1258
RTGASFQKAQQEFA G +PA R A AN G A+ AF AP
Sbjct: 306 RTGASFQKAQQEFAAGVFSNPAVRTAAANAAAGAAENAFRAP 347
>ref|XP_864743.1| PREDICTED: similar to secretory carrier membrane protein 3 isoform 1
isoform 3 [Canis familiaris].
Length = 357
Score = 445 bits (1144), Expect = e-125
Identities = 232/352 (65%), Positives = 240/352 (68%), Gaps = 10/352 (2%)
Frame = +2
Query: 233 DGGNPFAEPGELDNPFQDPAVIQHRPSPQYATLDVYNPFETRXXXXXXXXXXXXXXXXXX 412
DG NPFA P ELDNPFQDPAVIQHRPSPQYATLDVYNPFETR
Sbjct: 6 DGENPFAGPSELDNPFQDPAVIQHRPSPQYATLDVYNPFETREPPLAYEPPAPAPLPSPS 65
Query: 413 XXXLQSSRKLSPTEPKNYGSYXXXXXXXXXXXXXXXXXXELNRKAEELDRRERELQHAAL 592
LQSSRKLSPTEPKNYGSY ELNRKAEELDRRERELQHAAL
Sbjct: 66 APSLQSSRKLSPTEPKNYGSYSTQASAAAATAELLKKQEELNRKAEELDRRERELQHAAL 125
Query: 593 GGTATRQNNWPPLPSFCPVQPCFFQDISMEIPQEFQKTVSTMYYLWMC----------ST 742
GGTA RQNNWPPLPSFCPVQPCFFQDISMEIPQEFQKTVSTMYYLWMC ST
Sbjct: 126 GGTAARQNNWPPLPSFCPVQPCFFQDISMEIPQEFQKTVSTMYYLWMCEYVLYLCPLGST 185
Query: 743 XXXXXXXXXXXXSFCVETNTGSGFGLSILWILLFTPCSFVCWYRPMYKAXXXXXXXXXXX 922
SFCVET+ GSGFGLSILW+LLFTPCSFVCWYRPMYKA
Sbjct: 186 LALLLNFLACLASFCVETSNGSGFGLSILWVLLFTPCSFVCWYRPMYKAFRSDSSFNFFV 245
Query: 923 XXXXXXVQDVLYVLQAIGIPGWGFSGWISALMLVNTTRXXXXXXXXXXXXXTGIAVLGIV 1102
VQDVL+VLQAIGIPGWGFSGWISAL+++ T TGIAVLGIV
Sbjct: 246 FFFIFFVQDVLFVLQAIGIPGWGFSGWISALVVLKTNTAVAVLMLLVALLFTGIAVLGIV 305
Query: 1103 MLKRIHSLYRRTGASFQKAQQEFAGGGLLHPAGRNATANEPPGPAKYAFGAP 1258
MLKRIHSLYRRTGASFQKAQQEFA G +PA R A AN G A+ AF AP
Sbjct: 306 MLKRIHSLYRRTGASFQKAQQEFAAGVFSNPAVRTAAANAAAGAAENAFRAP 357
>ref|XP_850806.1| PREDICTED: similar to secretory carrier membrane protein 3 isoform 1
[Canis familiaris].
Length = 374
Score = 429 bits (1104), Expect(2) = e-123
Identities = 218/325 (67%), Positives = 226/325 (69%)
Frame = +2
Query: 233 DGGNPFAEPGELDNPFQDPAVIQHRPSPQYATLDVYNPFETRXXXXXXXXXXXXXXXXXX 412
DG NPF PG+LDNPFQDPAVIQH+PSPQYATLDVYNPFETR
Sbjct: 6 DGENPFIRPGKLDNPFQDPAVIQHQPSPQYATLDVYNPFETRELPLAYEPPAPAPLPSPS 65
Query: 413 XXXLQSSRKLSPTEPKNYGSYXXXXXXXXXXXXXXXXXXELNRKAEELDRRERELQHAAL 592
LQSSRKLSPTEPKNYGSY ELNRKAEELD RERELQHAAL
Sbjct: 66 APSLQSSRKLSPTEPKNYGSYSTQASAAAATAELLKKPEELNRKAEELDWRERELQHAAL 125
Query: 593 GGTATRQNNWPPLPSFCPVQPCFFQDISMEIPQEFQKTVSTMYYLWMCSTXXXXXXXXXX 772
GGTA RQNNWPPLPSFCPVQPCFFQDISMEIPQEFQKTVSTMYYLWMCST
Sbjct: 126 GGTAARQNNWPPLPSFCPVQPCFFQDISMEIPQEFQKTVSTMYYLWMCSTLALLLNFLAC 185
Query: 773 XXSFCVETNTGSGFGLSILWILLFTPCSFVCWYRPMYKAXXXXXXXXXXXXXXXXXVQDV 952
SFCVET+ GSGFGLSILW+LLFTPCSFVCWYRPMYKA VQDV
Sbjct: 186 LASFCVETSNGSGFGLSILWVLLFTPCSFVCWYRPMYKAFRSNSSFNFFVFFFIFFVQDV 245
Query: 953 LYVLQAIGIPGWGFSGWISALMLVNTTRXXXXXXXXXXXXXTGIAVLGIVMLKRIHSLYR 1132
L+VLQAIGIPGWGFSGWISAL+++ T TGIAVLGIVMLKRIHSLYR
Sbjct: 246 LFVLQAIGIPGWGFSGWISALVVLKTNTAVAVLMLLVALLFTGIAVLGIVMLKRIHSLYR 305
Query: 1133 RTGASFQKAQQEFAGGGLLHPAGRN 1207
RT SFQKAQQEFA G P G N
Sbjct: 306 RTSVSFQKAQQEFAAGVSPQPRGAN 330
Score = 33.1 bits (74), Expect(2) = e-123
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = +1
Query: 1183 SPPPCGAKCNCQ*TPWTCQICFRGPGTP 1266
SP P GA C CQ + W C+ C P +P
Sbjct: 323 SPQPRGANCCCQRSRWRCRKCLPSPISP 350
>ref|XP_864783.1| PREDICTED: similar to secretory carrier membrane protein 3 isoform 1
isoform 5 [Canis familiaris].
Length = 333
Score = 411 bits (1056), Expect = e-115
Identities = 219/342 (64%), Positives = 227/342 (66%)
Frame = +2
Query: 233 DGGNPFAEPGELDNPFQDPAVIQHRPSPQYATLDVYNPFETRXXXXXXXXXXXXXXXXXX 412
DG NPFA P ELDNPFQDPAVIQHRPSPQYATLDVYNPFETR
Sbjct: 6 DGENPFAGPSELDNPFQDPAVIQHRPSPQYATLDVYNPFETREPPLAYEPPAPAPLPSPS 65
Query: 413 XXXLQSSRKLSPTEPKNYGSYXXXXXXXXXXXXXXXXXXELNRKAEELDRRERELQHAAL 592
LQSSRKLSPTEPKNYGSY ELNRKAEELDRRERELQHAAL
Sbjct: 66 APSLQSSRKLSPTEPKNYGSYSTQASAAAATAELLKKQEELNRKAEELDRRERELQHAAL 125
Query: 593 GGTATRQNNWPPLPSFCPVQPCFFQDISMEIPQEFQKTVSTMYYLWMCSTXXXXXXXXXX 772
GGTA VQPCFFQDISMEIPQEFQKTVSTMYYLWMCST
Sbjct: 126 GGTA--------------VQPCFFQDISMEIPQEFQKTVSTMYYLWMCSTLALLLNFLAC 171
Query: 773 XXSFCVETNTGSGFGLSILWILLFTPCSFVCWYRPMYKAXXXXXXXXXXXXXXXXXVQDV 952
SFCVET+ GSGFGLSILW+LLFTPCSFVCWYRPMYKA VQDV
Sbjct: 172 LASFCVETSNGSGFGLSILWVLLFTPCSFVCWYRPMYKAFRSDSSFNFFVFFFIFFVQDV 231
Query: 953 LYVLQAIGIPGWGFSGWISALMLVNTTRXXXXXXXXXXXXXTGIAVLGIVMLKRIHSLYR 1132
L+VLQAIGIPGWGFSGWISAL+++ T TGIAVLGIVMLKRIHSLYR
Sbjct: 232 LFVLQAIGIPGWGFSGWISALVVLKTNTAVAVLMLLVALLFTGIAVLGIVMLKRIHSLYR 291
Query: 1133 RTGASFQKAQQEFAGGGLLHPAGRNATANEPPGPAKYAFGAP 1258
RTGASFQKAQQEFA G +PA R A AN G A+ AF AP
Sbjct: 292 RTGASFQKAQQEFAAGVFSNPAVRTAAANAAAGAAENAFRAP 333
>ref|XP_864802.1| PREDICTED: similar to secretory carrier membrane protein 3 isoform 2
isoform 6 [Canis familiaris].
Length = 321
Score = 393 bits (1010), Expect = e-109
Identities = 210/342 (61%), Positives = 220/342 (64%)
Frame = +2
Query: 233 DGGNPFAEPGELDNPFQDPAVIQHRPSPQYATLDVYNPFETRXXXXXXXXXXXXXXXXXX 412
DG NPFA P ELDNPFQ P + P+P
Sbjct: 6 DGENPFAGPSELDNPFQPPLAYEP-PAPA-------------------------PLPSPS 39
Query: 413 XXXLQSSRKLSPTEPKNYGSYXXXXXXXXXXXXXXXXXXELNRKAEELDRRERELQHAAL 592
LQSSRKLSPTEPKNYGSY ELNRKAEELDRRERELQHAAL
Sbjct: 40 APSLQSSRKLSPTEPKNYGSYSTQASAAAATAELLKKQEELNRKAEELDRRERELQHAAL 99
Query: 593 GGTATRQNNWPPLPSFCPVQPCFFQDISMEIPQEFQKTVSTMYYLWMCSTXXXXXXXXXX 772
GGTA RQNNWPPLPSFCPVQPCFFQDISMEIPQEFQKTVSTMYYLWMCST
Sbjct: 100 GGTAARQNNWPPLPSFCPVQPCFFQDISMEIPQEFQKTVSTMYYLWMCSTLALLLNFLAC 159
Query: 773 XXSFCVETNTGSGFGLSILWILLFTPCSFVCWYRPMYKAXXXXXXXXXXXXXXXXXVQDV 952
SFCVET+ GSGFGLSILW+LLFTPCSFVCWYRPMYKA VQDV
Sbjct: 160 LASFCVETSNGSGFGLSILWVLLFTPCSFVCWYRPMYKAFRSDSSFNFFVFFFIFFVQDV 219
Query: 953 LYVLQAIGIPGWGFSGWISALMLVNTTRXXXXXXXXXXXXXTGIAVLGIVMLKRIHSLYR 1132
L+VLQAIGIPGWGFSGWISAL+++ T TGIAVLGIVMLKRIHSLYR
Sbjct: 220 LFVLQAIGIPGWGFSGWISALVVLKTNTAVAVLMLLVALLFTGIAVLGIVMLKRIHSLYR 279
Query: 1133 RTGASFQKAQQEFAGGGLLHPAGRNATANEPPGPAKYAFGAP 1258
RTGASFQKAQQEFA G +PA R A AN G A+ AF AP
Sbjct: 280 RTGASFQKAQQEFAAGVFSNPAVRTAAANAAAGAAENAFRAP 321
>ref|XP_864724.1| PREDICTED: similar to secretory carrier membrane protein 3 isoform
1 isoform 2 [Canis familiaris].
Length = 181
Score = 249 bits (637), Expect = 3e-66
Identities = 124/167 (74%), Positives = 124/167 (74%)
Frame = +2
Query: 233 DGGNPFAEPGELDNPFQDPAVIQHRPSPQYATLDVYNPFETRXXXXXXXXXXXXXXXXXX 412
DG NPFA P ELDNPFQDPAVIQHRPSPQYATLDVYNPFETR
Sbjct: 6 DGENPFAGPSELDNPFQDPAVIQHRPSPQYATLDVYNPFETREPPLAYEPPAPAPLPSPS 65
Query: 413 XXXLQSSRKLSPTEPKNYGSYXXXXXXXXXXXXXXXXXXELNRKAEELDRRERELQHAAL 592
LQSSRKLSPTEPKNYGSY ELNRKAEELDRRERELQHAAL
Sbjct: 66 APSLQSSRKLSPTEPKNYGSYSTQASAAAATAELLKKQEELNRKAEELDRRERELQHAAL 125
Query: 593 GGTATRQNNWPPLPSFCPVQPCFFQDISMEIPQEFQKTVSTMYYLWM 733
GGTA RQNNWPPLPSFCPVQPCFFQDISMEIPQEFQKTVSTMYYLWM
Sbjct: 126 GGTAARQNNWPPLPSFCPVQPCFFQDISMEIPQEFQKTVSTMYYLWM 172
>ref|XP_859726.1| PREDICTED: similar to Secretory carrier-associated membrane protein 1
(Secretory carrier membrane protein 1) isoform 2 [Canis
familiaris].
Length = 341
Score = 231 bits (590), Expect = 9e-61
Identities = 140/337 (41%), Positives = 171/337 (50%), Gaps = 2/337 (0%)
Frame = +2
Query: 242 NPFAEPGELDNPFQDPAVIQ-HRPSPQYATLDVYNPFETRXXXXXXXXXXXXXXXXXXXX 418
NPFA+P +L+NPF+DP+V Q R P LD YNPF
Sbjct: 7 NPFADP-DLNNPFKDPSVTQVTRNVPP--GLDEYNPFSDSRTPPPGTVKMPNVPSTQPAI 63
Query: 419 XLQSSRKLSPTEPKNYGSYXXXXXXXXXXXXXXXXXXE-LNRKAEELDRRERELQHAALG 595
+ PTE + +Y E L RKA ELDRRERE+Q+ +
Sbjct: 64 -------MKPTE--EHPAYTQIAKEHALAQAELLKRQEELERKAAELDRREREMQNLSQH 114
Query: 596 GTATRQNNWPPLPSFCPVQPCFFQDISMEIPQEFQKTVSTMYYLWMCSTXXXXXXXXXXX 775
GT +R+NNWPPLP PV PCF+QD S++IP EFQKTV MYYLWM
Sbjct: 115 GTLSRKNNWPPLPGNFPVGPCFYQDFSVDIPVEFQKTVKIMYYLWMFHAVTLFLNIFGCL 174
Query: 776 XSFCVETNTGSGFGLSILWILLFTPCSFVCWYRPMYKAXXXXXXXXXXXXXXXXXVQDVL 955
FCV+ G FGLSILW LLFTPCSFVCWYRP+Y A Q +
Sbjct: 175 AWFCVDPTRGVDFGLSILWFLLFTPCSFVCWYRPLYGAFRSDSSFRFFVFFFVYICQFAV 234
Query: 956 YVLQAIGIPGWGFSGWISALMLVNTTRXXXXXXXXXXXXXTGIAVLGIVMLKRIHSLYRR 1135
+VLQA G WG GWIS+L +N + T AV+ +VM K++H LYR
Sbjct: 235 HVLQAAGFHNWGNCGWISSLTGLNQSIPVGIMMIIIAALFTASAVISLVMFKKVHGLYRT 294
Query: 1136 TGASFQKAQQEFAGGGLLHPAGRNATANEPPGPAKYA 1246
TGASF+KAQQEFA G + + + A AN A A
Sbjct: 295 TGASFEKAQQEFATGVMSNKTVQTAAANAASSAATSA 331
>ref|XP_536314.2| PREDICTED: similar to Secretory carrier-associated membrane protein 1
(Secretory carrier membrane protein 1) isoform 1 [Canis
familiaris].
Length = 338
Score = 224 bits (571), Expect = 1e-58
Identities = 139/337 (41%), Positives = 169/337 (50%), Gaps = 2/337 (0%)
Frame = +2
Query: 242 NPFAEPGELDNPFQDPAVIQ-HRPSPQYATLDVYNPFETRXXXXXXXXXXXXXXXXXXXX 418
NPFA+P +L+NPF+DP+V Q R P LD YNPF
Sbjct: 7 NPFADP-DLNNPFKDPSVTQVTRNVPP--GLDEYNPFSDSRTPPPGTVKMPNVPSTQPAI 63
Query: 419 XLQSSRKLSPTEPKNYGSYXXXXXXXXXXXXXXXXXXE-LNRKAEELDRRERELQHAALG 595
+ PTE + +Y E L RKA ELDRRERE+Q+ +
Sbjct: 64 -------MKPTE--EHPAYTQIAKEHALAQAELLKRQEELERKAAELDRREREMQNLSQH 114
Query: 596 GTATRQNNWPPLPSFCPVQPCFFQDISMEIPQEFQKTVSTMYYLWMCSTXXXXXXXXXXX 775
G R+NNWPPLP PV PCF+QD S++IP EFQKTV MYYLWM
Sbjct: 115 G---RKNNWPPLPGNFPVGPCFYQDFSVDIPVEFQKTVKIMYYLWMFHAVTLFLNIFGCL 171
Query: 776 XSFCVETNTGSGFGLSILWILLFTPCSFVCWYRPMYKAXXXXXXXXXXXXXXXXXVQDVL 955
FCV+ G FGLSILW LLFTPCSFVCWYRP+Y A Q +
Sbjct: 172 AWFCVDPTRGVDFGLSILWFLLFTPCSFVCWYRPLYGAFRSDSSFRFFVFFFVYICQFAV 231
Query: 956 YVLQAIGIPGWGFSGWISALMLVNTTRXXXXXXXXXXXXXTGIAVLGIVMLKRIHSLYRR 1135
+VLQA G WG GWIS+L +N + T AV+ +VM K++H LYR
Sbjct: 232 HVLQAAGFHNWGNCGWISSLTGLNQSIPVGIMMIIIAALFTASAVISLVMFKKVHGLYRT 291
Query: 1136 TGASFQKAQQEFAGGGLLHPAGRNATANEPPGPAKYA 1246
TGASF+KAQQEFA G + + + A AN A A
Sbjct: 292 TGASFEKAQQEFATGVMSNKTVQTAAANAASSAATSA 328
>ref|XP_544777.2| PREDICTED: similar to Secretory carrier-associated membrane protein 2
isoform 1 [Canis familiaris].
Length = 329
Score = 222 bits (565), Expect = 7e-58
Identities = 129/331 (38%), Positives = 178/331 (53%), Gaps = 1/331 (0%)
Frame = +2
Query: 242 NPFAEPGELDNPFQDPAVIQHRPSPQYATLDVYNPFETRXXXXXXXXXXXXXXXXXXXXX 421
NPFA+P ++ NPFQDP+V Q +PQ +L +NPF
Sbjct: 7 NPFADPVDV-NPFQDPSVTQLTNAPQ-GSLAEFNPFSETNAATTVPVTQLPGPSQPAV-- 62
Query: 422 LQSSRKLSPTEPKNYGSYXXXXXXXXXXXXXXXXXXELNRKAEELDRRERELQHAALGGT 601
LQ S + PT+P EL+RKA EL+R+ERELQ + +
Sbjct: 63 LQPS--VEPTQPTPQA------VASAAQASLLRQQEELDRKAAELERKERELQ-STVASL 113
Query: 602 ATRQNNWPPLPSFCPVQPCFFQDISMEIPQEFQKTVSTMYYLWMCSTXXXXXXXXXXXXS 781
R+NNWPPLP +CPV+PCF+QD S+EIP ++Q+ +YYLWM +
Sbjct: 114 HVRENNWPPLPFWCPVKPCFYQDFSVEIPADYQRICKMLYYLWMLHSVTLFLNLLACLAW 173
Query: 782 FCVETNTGSGFGLSILWILLFTPCSFVCWYRPMYKAXXXXXXXXXXXXXXXXXVQDVLYV 961
F V+++ G FGLSILW+++FTPC+F+CWYRP+YKA Q V+Y+
Sbjct: 174 FLVDSSKGVDFGLSILWLIMFTPCAFLCWYRPIYKAFRSDNSFSFFVFFFIFFCQIVIYI 233
Query: 962 LQAIGIPGWGFSGWISALMLVNTTR-XXXXXXXXXXXXXTGIAVLGIVMLKRIHSLYRRT 1138
+Q +GIPG G SGWI+AL + T AVL + +LKR+HSLYRRT
Sbjct: 234 IQLVGIPGLGDSGWIAALSTLKQDHLAVSIIMMVVAGFFTLCAVLSLFLLKRVHSLYRRT 293
Query: 1139 GASFQKAQQEFAGGGLLHPAGRNATANEPPG 1231
GASFQ+AQ+EF+ G + R+A ++ G
Sbjct: 294 GASFQQAQEEFSQGIFSNRTFRSAASSAARG 324
Database: RefSeq44_CP.fasta
Posted date: Nov 15, 2010 4:36 PM
Number of letters in database: 18,921,627
Number of sequences in database: 33,359
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33359
Number of Hits to DB: 50,024,743
Number of extensions: 1450716
Number of successful extensions: 5909
Number of sequences better than 1.0e-05: 15
Number of HSP's gapped: 5849
Number of HSP's successfully gapped: 18
Length of query: 422
Length of database: 18,921,627
Length adjustment: 105
Effective length of query: 317
Effective length of database: 15,418,932
Effective search space: 4887801444
Effective search space used: 4887801444
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqHP_Rel44
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20101001C-002279
(1268 letters)
Database: RefSeq44_HP.fasta
33,950 sequences; 18,324,212 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_005689.2| secretory carrier-associated membrane protein 3... 452 e-127
Alignment gi|NP_443069.1| secretory carrier-associated membrane protein 3... 396 e-110
Alignment gi|NP_004857.4| secretory carrier-associated membrane protein 1... 223 4e-58
Alignment gi|NP_005688.2| secretory carrier-associated membrane protein 2... 217 2e-56
Alignment gi|NP_001171583.1| secretory carrier-associated membrane protei... 158 9e-39
Alignment gi|NP_620417.1| secretory carrier-associated membrane protein 5... 158 9e-39
Alignment gi|NP_001171582.1| secretory carrier-associated membrane protei... 158 9e-39
Alignment gi|NP_524558.1| secretory carrier-associated membrane protein 4... 149 5e-36
>ref|NP_005689.2| secretory carrier-associated membrane protein 3 isoform 1 [Homo
sapiens].
Length = 347
Score = 452 bits (1163), Expect = e-127
Identities = 232/342 (67%), Positives = 239/342 (69%)
Frame = +2
Query: 233 DGGNPFAEPGELDNPFQDPAVIQHRPSPQYATLDVYNPFETRXXXXXXXXXXXXXXXXXX 412
DGGNPFAEP ELDNPFQDPAVIQHRPS QYATLDVYNPFETR
Sbjct: 6 DGGNPFAEPSELDNPFQDPAVIQHRPSRQYATLDVYNPFETREPPPAYEPPAPAPLPPPS 65
Query: 413 XXXLQSSRKLSPTEPKNYGSYXXXXXXXXXXXXXXXXXXELNRKAEELDRRERELQHAAL 592
LQ SRKLSPTEPKNYGSY ELNRKAEELDRRERELQHAAL
Sbjct: 66 APSLQPSRKLSPTEPKNYGSYSTQASAAAATAELLKKQEELNRKAEELDRRERELQHAAL 125
Query: 593 GGTATRQNNWPPLPSFCPVQPCFFQDISMEIPQEFQKTVSTMYYLWMCSTXXXXXXXXXX 772
GGTATRQNNWPPLPSFCPVQPCFFQDISMEIPQEFQKTVSTMYYLWMCST
Sbjct: 126 GGTATRQNNWPPLPSFCPVQPCFFQDISMEIPQEFQKTVSTMYYLWMCSTLALLLNFLAC 185
Query: 773 XXSFCVETNTGSGFGLSILWILLFTPCSFVCWYRPMYKAXXXXXXXXXXXXXXXXXVQDV 952
SFCVETN G+GFGLSILW+LLFTPCSFVCWYRPMYKA VQDV
Sbjct: 186 LASFCVETNNGAGFGLSILWVLLFTPCSFVCWYRPMYKAFRSDSSFNFFVFFFIFFVQDV 245
Query: 953 LYVLQAIGIPGWGFSGWISALMLVNTTRXXXXXXXXXXXXXTGIAVLGIVMLKRIHSLYR 1132
L+VLQAIGIPGWGFSGWISAL++ TGIAVLGIVMLKRIHSLYR
Sbjct: 246 LFVLQAIGIPGWGFSGWISALVVPKGNTAVSVLMLLVALLFTGIAVLGIVMLKRIHSLYR 305
Query: 1133 RTGASFQKAQQEFAGGGLLHPAGRNATANEPPGPAKYAFGAP 1258
RTGASFQKAQQEFA G +PA R A AN G A+ AF AP
Sbjct: 306 RTGASFQKAQQEFAAGVFSNPAVRTAAANAAAGAAENAFRAP 347
>ref|NP_443069.1| secretory carrier-associated membrane protein 3 isoform 2 [Homo
sapiens].
Length = 321
Score = 396 bits (1017), Expect = e-110
Identities = 211/342 (61%), Positives = 220/342 (64%)
Frame = +2
Query: 233 DGGNPFAEPGELDNPFQDPAVIQHRPSPQYATLDVYNPFETRXXXXXXXXXXXXXXXXXX 412
DGGNPFAEP ELDNPFQ P + P+P
Sbjct: 6 DGGNPFAEPSELDNPFQPPPAYEP-PAPA-------------------------PLPPPS 39
Query: 413 XXXLQSSRKLSPTEPKNYGSYXXXXXXXXXXXXXXXXXXELNRKAEELDRRERELQHAAL 592
LQ SRKLSPTEPKNYGSY ELNRKAEELDRRERELQHAAL
Sbjct: 40 APSLQPSRKLSPTEPKNYGSYSTQASAAAATAELLKKQEELNRKAEELDRRERELQHAAL 99
Query: 593 GGTATRQNNWPPLPSFCPVQPCFFQDISMEIPQEFQKTVSTMYYLWMCSTXXXXXXXXXX 772
GGTATRQNNWPPLPSFCPVQPCFFQDISMEIPQEFQKTVSTMYYLWMCST
Sbjct: 100 GGTATRQNNWPPLPSFCPVQPCFFQDISMEIPQEFQKTVSTMYYLWMCSTLALLLNFLAC 159
Query: 773 XXSFCVETNTGSGFGLSILWILLFTPCSFVCWYRPMYKAXXXXXXXXXXXXXXXXXVQDV 952
SFCVETN G+GFGLSILW+LLFTPCSFVCWYRPMYKA VQDV
Sbjct: 160 LASFCVETNNGAGFGLSILWVLLFTPCSFVCWYRPMYKAFRSDSSFNFFVFFFIFFVQDV 219
Query: 953 LYVLQAIGIPGWGFSGWISALMLVNTTRXXXXXXXXXXXXXTGIAVLGIVMLKRIHSLYR 1132
L+VLQAIGIPGWGFSGWISAL++ TGIAVLGIVMLKRIHSLYR
Sbjct: 220 LFVLQAIGIPGWGFSGWISALVVPKGNTAVSVLMLLVALLFTGIAVLGIVMLKRIHSLYR 279
Query: 1133 RTGASFQKAQQEFAGGGLLHPAGRNATANEPPGPAKYAFGAP 1258
RTGASFQKAQQEFA G +PA R A AN G A+ AF AP
Sbjct: 280 RTGASFQKAQQEFAAGVFSNPAVRTAAANAAAGAAENAFRAP 321
>ref|NP_004857.4| secretory carrier-associated membrane protein 1 [Homo sapiens].
Length = 338
Score = 223 bits (567), Expect = 4e-58
Identities = 137/328 (41%), Positives = 167/328 (50%), Gaps = 2/328 (0%)
Frame = +2
Query: 242 NPFAEPGELDNPFQDPAVIQ-HRPSPQYATLDVYNPFETRXXXXXXXXXXXXXXXXXXXX 418
NPFA+P +L+NPF+DP+V Q R P LD YNPF
Sbjct: 7 NPFADP-DLNNPFKDPSVTQVTRNVPP--GLDEYNPFSDSRTPPPGGVKMPNVPNTQPAI 63
Query: 419 XLQSSRKLSPTEPKNYGSYXXXXXXXXXXXXXXXXXXE-LNRKAEELDRRERELQHAALG 595
+ PTE + +Y E L RKA ELDRRERE+Q+ +
Sbjct: 64 -------MKPTE--EHPAYTQIAKEHALAQAELLKRQEELERKAAELDRREREMQNLSQH 114
Query: 596 GTATRQNNWPPLPSFCPVQPCFFQDISMEIPQEFQKTVSTMYYLWMCSTXXXXXXXXXXX 775
G R+NNWPPLPS PV PCF+QD S++IP EFQKTV MYYLWM
Sbjct: 115 G---RKNNWPPLPSNFPVGPCFYQDFSVDIPVEFQKTVKLMYYLWMFHAVTLFLNIFGCL 171
Query: 776 XSFCVETNTGSGFGLSILWILLFTPCSFVCWYRPMYKAXXXXXXXXXXXXXXXXXVQDVL 955
FCV++ FGLSILW LLFTPCSFVCWYRP+Y A Q +
Sbjct: 172 AWFCVDSARAVDFGLSILWFLLFTPCSFVCWYRPLYGAFRSDSSFRFFVFFFVYICQFAV 231
Query: 956 YVLQAIGIPGWGFSGWISALMLVNTTRXXXXXXXXXXXXXTGIAVLGIVMLKRIHSLYRR 1135
+VLQA G WG GWIS+L +N T AV+ +VM K++H LYR
Sbjct: 232 HVLQAAGFHNWGNCGWISSLTGLNQNIPVGIMMIIIAALFTASAVISLVMFKKVHGLYRT 291
Query: 1136 TGASFQKAQQEFAGGGLLHPAGRNATAN 1219
TGASF+KAQQEFA G + + + A AN
Sbjct: 292 TGASFEKAQQEFATGVMSNKTVQTAAAN 319
>ref|NP_005688.2| secretory carrier-associated membrane protein 2 [Homo sapiens].
Length = 329
Score = 217 bits (552), Expect = 2e-56
Identities = 128/314 (40%), Positives = 168/314 (53%), Gaps = 1/314 (0%)
Frame = +2
Query: 242 NPFAEPGELDNPFQDPAVIQHRPSPQYATLDVYNPFETRXXXXXXXXXXXXXXXXXXXXX 421
NPFA+P ++ NPFQDP+V Q +PQ L +NPF
Sbjct: 7 NPFADPVDV-NPFQDPSVTQLTNAPQ-GGLAEFNPFSETNAATTVPVTQLPGSSQPAV-- 62
Query: 422 LQSSRKLSPTEPKNYGSYXXXXXXXXXXXXXXXXXXELNRKAEELDRRERELQHAALGGT 601
LQ S + PT+P EL+RKA EL+R+ERELQ+ +
Sbjct: 63 LQPS--VEPTQPTPQA------VVSAAQAGLLRQQEELDRKAAELERKERELQNT-VANL 113
Query: 602 ATRQNNWPPLPSFCPVQPCFFQDISMEIPQEFQKTVSTMYYLWMCSTXXXXXXXXXXXXS 781
RQNNWPPLPS+CPV+PCF+QD S EIP ++Q+ +YYLWM +
Sbjct: 114 HVRQNNWPPLPSWCPVKPCFYQDFSTEIPADYQRICKMLYYLWMLHSVTLFLNLLACLAW 173
Query: 782 FCVETNTGSGFGLSILWILLFTPCSFVCWYRPMYKAXXXXXXXXXXXXXXXXXVQDVLYV 961
F ++ G FGLSILW L+FTPC+F+CWYRP+YKA Q +Y+
Sbjct: 174 FSGNSSKGVDFGLSILWFLIFTPCAFLCWYRPIYKAFRSDNSFSFFVFFFVFFCQIGIYI 233
Query: 962 LQAIGIPGWGFSGWISAL-MLVNTTRXXXXXXXXXXXXXTGIAVLGIVMLKRIHSLYRRT 1138
+Q +GIPG G SGWI+AL L N + T AVL + +L+R+HSLYRRT
Sbjct: 234 IQLVGIPGLGDSGWIAALSTLDNHSLAISVIMMVVAGFFTLCAVLSVFLLQRVHSLYRRT 293
Query: 1139 GASFQKAQQEFAGG 1180
GASFQ+AQ+EF+ G
Sbjct: 294 GASFQQAQEEFSQG 307
>ref|NP_001171583.1| secretory carrier-associated membrane protein 5 [Homo sapiens].
Length = 235
Score = 158 bits (400), Expect = 9e-39
Identities = 76/220 (34%), Positives = 112/220 (50%)
Frame = +2
Query: 602 ATRQNNWPPLPSFCPVQPCFFQDISMEIPQEFQKTVSTMYYLWMCSTXXXXXXXXXXXXS 781
A + NN+PPLP F P++PCF+QD +IP + +YYLWM ++ +
Sbjct: 2 AEKVNNFPPLPKFIPLKPCFYQDFEADIPPQHVSMTKRLYYLWMLNS-VTLAVNLVGCLA 60
Query: 782 FCVETNTGSGFGLSILWILLFTPCSFVCWYRPMYKAXXXXXXXXXXXXXXXXXVQDVLYV 961
+ + + FGL+ LW++LFTPCS+VCW+RP+YKA Q V+ +
Sbjct: 61 WLIGGGGATNFGLAFLWLILFTPCSYVCWFRPIYKAFKTDSSFSFMAFFFTFMAQLVISI 120
Query: 962 LQAIGIPGWGFSGWISALMLVNTTRXXXXXXXXXXXXXTGIAVLGIVMLKRIHSLYRRTG 1141
+QA+GIPGWG GWI+ + T T +AV + L +H YR +G
Sbjct: 121 IQAVGIPGWGVCGWIATISFFGTNIGSAVVMLIPTVMFTVMAVFSFIALSMVHKFYRGSG 180
Query: 1142 ASFQKAQQEFAGGGLLHPAGRNATANEPPGPAKYAFGAPE 1261
SF KAQ+E+ G +P + A N G A+ A P+
Sbjct: 181 GSFSKAQEEWTTGAWKNPHVQQAAQNAAMGAAQGAMNQPQ 220
>ref|NP_620417.1| secretory carrier-associated membrane protein 5 [Homo sapiens].
Length = 235
Score = 158 bits (400), Expect = 9e-39
Identities = 76/220 (34%), Positives = 112/220 (50%)
Frame = +2
Query: 602 ATRQNNWPPLPSFCPVQPCFFQDISMEIPQEFQKTVSTMYYLWMCSTXXXXXXXXXXXXS 781
A + NN+PPLP F P++PCF+QD +IP + +YYLWM ++ +
Sbjct: 2 AEKVNNFPPLPKFIPLKPCFYQDFEADIPPQHVSMTKRLYYLWMLNS-VTLAVNLVGCLA 60
Query: 782 FCVETNTGSGFGLSILWILLFTPCSFVCWYRPMYKAXXXXXXXXXXXXXXXXXVQDVLYV 961
+ + + FGL+ LW++LFTPCS+VCW+RP+YKA Q V+ +
Sbjct: 61 WLIGGGGATNFGLAFLWLILFTPCSYVCWFRPIYKAFKTDSSFSFMAFFFTFMAQLVISI 120
Query: 962 LQAIGIPGWGFSGWISALMLVNTTRXXXXXXXXXXXXXTGIAVLGIVMLKRIHSLYRRTG 1141
+QA+GIPGWG GWI+ + T T +AV + L +H YR +G
Sbjct: 121 IQAVGIPGWGVCGWIATISFFGTNIGSAVVMLIPTVMFTVMAVFSFIALSMVHKFYRGSG 180
Query: 1142 ASFQKAQQEFAGGGLLHPAGRNATANEPPGPAKYAFGAPE 1261
SF KAQ+E+ G +P + A N G A+ A P+
Sbjct: 181 GSFSKAQEEWTTGAWKNPHVQQAAQNAAMGAAQGAMNQPQ 220
>ref|NP_001171582.1| secretory carrier-associated membrane protein 5 [Homo sapiens].
Length = 235
Score = 158 bits (400), Expect = 9e-39
Identities = 76/220 (34%), Positives = 112/220 (50%)
Frame = +2
Query: 602 ATRQNNWPPLPSFCPVQPCFFQDISMEIPQEFQKTVSTMYYLWMCSTXXXXXXXXXXXXS 781
A + NN+PPLP F P++PCF+QD +IP + +YYLWM ++ +
Sbjct: 2 AEKVNNFPPLPKFIPLKPCFYQDFEADIPPQHVSMTKRLYYLWMLNS-VTLAVNLVGCLA 60
Query: 782 FCVETNTGSGFGLSILWILLFTPCSFVCWYRPMYKAXXXXXXXXXXXXXXXXXVQDVLYV 961
+ + + FGL+ LW++LFTPCS+VCW+RP+YKA Q V+ +
Sbjct: 61 WLIGGGGATNFGLAFLWLILFTPCSYVCWFRPIYKAFKTDSSFSFMAFFFTFMAQLVISI 120
Query: 962 LQAIGIPGWGFSGWISALMLVNTTRXXXXXXXXXXXXXTGIAVLGIVMLKRIHSLYRRTG 1141
+QA+GIPGWG GWI+ + T T +AV + L +H YR +G
Sbjct: 121 IQAVGIPGWGVCGWIATISFFGTNIGSAVVMLIPTVMFTVMAVFSFIALSMVHKFYRGSG 180
Query: 1142 ASFQKAQQEFAGGGLLHPAGRNATANEPPGPAKYAFGAPE 1261
SF KAQ+E+ G +P + A N G A+ A P+
Sbjct: 181 GSFSKAQEEWTTGAWKNPHVQQAAQNAAMGAAQGAMNQPQ 220
>ref|NP_524558.1| secretory carrier-associated membrane protein 4 [Homo sapiens].
Length = 229
Score = 149 bits (376), Expect = 5e-36
Identities = 78/210 (37%), Positives = 110/210 (52%), Gaps = 2/210 (0%)
Frame = +2
Query: 608 RQNNWPPLPSFCPVQPCFFQDISMEIPQEFQKTVSTMYYLWM--CSTXXXXXXXXXXXXS 781
++NN+PPLP F PV+PCF+Q+ S EIP E Q V +Y LWM C+T +
Sbjct: 4 KENNFPPLPKFIPVKPCFYQNFSDEIPVEHQVLVKRIYRLWMFYCAT---LGVNLIACLA 60
Query: 782 FCVETNTGSGFGLSILWILLFTPCSFVCWYRPMYKAXXXXXXXXXXXXXXXXXVQDVLYV 961
+ + +G+ FGL+ +W+LLFTPC +VCW+RP+YKA Q VL V
Sbjct: 61 WWIGGGSGTNFGLAFVWLLLFTPCGYVCWFRPVYKAFRADSSFNFMAFFFIFGAQFVLTV 120
Query: 962 LQAIGIPGWGFSGWISALMLVNTTRXXXXXXXXXXXXXTGIAVLGIVMLKRIHSLYRRTG 1141
+QAIG GWG GW+SA+ + + A + + + ++H +YR G
Sbjct: 121 IQAIGFSGWGACGWLSAIGFFQYSPGAAVVMLLPAIMFSVSAAMMAIAIMKVHRIYRGAG 180
Query: 1142 ASFQKAQQEFAGGGLLHPAGRNATANEPPG 1231
SFQKAQ E+ G +P R A N G
Sbjct: 181 GSFQKAQTEWNTGTWRNPPSREAQYNNFSG 210
Database: RefSeq44_HP.fasta
Posted date: Nov 15, 2010 4:36 PM
Number of letters in database: 18,324,212
Number of sequences in database: 33,950
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33950
Number of Hits to DB: 49,253,198
Number of extensions: 1423688
Number of successful extensions: 5428
Number of sequences better than 1.0e-05: 8
Number of HSP's gapped: 5376
Number of HSP's successfully gapped: 9
Length of query: 422
Length of database: 18,324,212
Length adjustment: 105
Effective length of query: 317
Effective length of database: 14,759,462
Effective search space: 4678749454
Effective search space used: 4678749454
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqMP_Rel44
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20101001C-002279
(1268 letters)
Database: RefSeq44_MP.fasta
29,866 sequences; 15,452,059 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_036016.2| secretory carrier-associated membrane protein 3... 424 e-119
Alignment gi|NP_083429.1| secretory carrier-associated membrane protein 1... 224 1e-58
Alignment gi|NP_073724.1| secretory carrier-associated membrane protein 2... 205 7e-53
Alignment gi|NP_064666.1| secretory carrier-associated membrane protein 5... 159 4e-39
Alignment gi|NP_062521.1| secretory carrier-associated membrane protein 4... 152 7e-37
>ref|NP_036016.2| secretory carrier-associated membrane protein 3 [Mus musculus].
Length = 349
Score = 424 bits (1091), Expect = e-119
Identities = 217/344 (63%), Positives = 234/344 (68%), Gaps = 2/344 (0%)
Frame = +2
Query: 233 DGGNPFAEPGELDNPFQDPAVIQHRPSPQYATLDVYNPFETRXXXXXXXXXXXXXXXXXX 412
D GNPF + GELDNPFQDPAVIQHRPS QYATLDVYNPFE R
Sbjct: 6 DTGNPFPDSGELDNPFQDPAVIQHRPSQQYATLDVYNPFENREPPPAYEPPAPAPAPLPP 65
Query: 413 XXX--LQSSRKLSPTEPKNYGSYXXXXXXXXXXXXXXXXXXELNRKAEELDRRERELQHA 586
+QSSRKLSPTEP+NYGSY ELNRKAEELDRRERELQH
Sbjct: 66 PSAPSVQSSRKLSPTEPRNYGSYSTQASAAAATAELLKKQEELNRKAEELDRRERELQHV 125
Query: 587 ALGGTATRQNNWPPLPSFCPVQPCFFQDISMEIPQEFQKTVSTMYYLWMCSTXXXXXXXX 766
ALGG TRQNNWPPLPSFCPV+PCFFQDISMEIPQEFQKTVSTMYYLWMCST
Sbjct: 126 ALGGAGTRQNNWPPLPSFCPVKPCFFQDISMEIPQEFQKTVSTMYYLWMCSTLALLLNFF 185
Query: 767 XXXXSFCVETNTGSGFGLSILWILLFTPCSFVCWYRPMYKAXXXXXXXXXXXXXXXXXVQ 946
FCV+T +GSGFGLS+LW+LLFTPCSFVCWYRPMYKA VQ
Sbjct: 186 ACLARFCVDTGSGSGFGLSMLWLLLFTPCSFVCWYRPMYKAFRSDSSFNFFVFFFIFFVQ 245
Query: 947 DVLYVLQAIGIPGWGFSGWISALMLVNTTRXXXXXXXXXXXXXTGIAVLGIVMLKRIHSL 1126
DV +VLQAIGIPGWGFSGW++AL++V + TGIAVLGIVMLKRIHSL
Sbjct: 246 DVFFVLQAIGIPGWGFSGWVTALVVVGSKPAVAVLMLLVALLFTGIAVLGIVMLKRIHSL 305
Query: 1127 YRRTGASFQKAQQEFAGGGLLHPAGRNATANEPPGPAKYAFGAP 1258
YR+TGASFQKAQQEFA G +PA R A AN G A+ AF AP
Sbjct: 306 YRQTGASFQKAQQEFAAGVFSNPAVRTAAANAAAGAAENAFRAP 349
>ref|NP_083429.1| secretory carrier-associated membrane protein 1 [Mus musculus].
Length = 338
Score = 224 bits (570), Expect = 1e-58
Identities = 137/328 (41%), Positives = 168/328 (51%), Gaps = 2/328 (0%)
Frame = +2
Query: 242 NPFAEPGELDNPFQDPAVIQ-HRPSPQYATLDVYNPFETRXXXXXXXXXXXXXXXXXXXX 418
NPFA+P +L+NPF+DP+V Q R P LD YNPF
Sbjct: 7 NPFADP-DLNNPFKDPSVTQVTRNVPP--GLDEYNPFSDSRTPPPGSVKMPNVPNTQPAI 63
Query: 419 XLQSSRKLSPTEPKNYGSYXXXXXXXXXXXXXXXXXXE-LNRKAEELDRRERELQHAALG 595
+ PTE + +Y E L RKA ELDRRERE+Q+ +
Sbjct: 64 -------MKPTE--EHPAYTQITKEHALAQAELLKRQEELERKAAELDRREREMQNLSQH 114
Query: 596 GTATRQNNWPPLPSFCPVQPCFFQDISMEIPQEFQKTVSTMYYLWMCSTXXXXXXXXXXX 775
G R+NNWPPLPS PV PCF+QD S++IP EFQKTV MYYLWM
Sbjct: 115 G---RKNNWPPLPSNFPVGPCFYQDFSVDIPVEFQKTVKLMYYLWMFHAVTLFLNIFGCL 171
Query: 776 XSFCVETNTGSGFGLSILWILLFTPCSFVCWYRPMYKAXXXXXXXXXXXXXXXXXVQDVL 955
FCV+++ FGLSILW LLFTPCSFVCWYRP+Y A Q +
Sbjct: 172 AWFCVDSSRAVDFGLSILWFLLFTPCSFVCWYRPLYGAFRSDSSFRFFVFFFVYICQFAV 231
Query: 956 YVLQAIGIPGWGFSGWISALMLVNTTRXXXXXXXXXXXXXTGIAVLGIVMLKRIHSLYRR 1135
+VLQA G WG GWIS+L +N T AV+ +VM K++H LYR
Sbjct: 232 HVLQAAGFHNWGNCGWISSLTGLNKNIPVGIMMIIIAALFTASAVISLVMFKKVHGLYRT 291
Query: 1136 TGASFQKAQQEFAGGGLLHPAGRNATAN 1219
TGASF+KAQQEFA G + + + A AN
Sbjct: 292 TGASFEKAQQEFATGVMSNKTVQTAAAN 319
>ref|NP_073724.1| secretory carrier-associated membrane protein 2 [Mus musculus].
Length = 329
Score = 205 bits (521), Expect = 7e-53
Identities = 123/331 (37%), Positives = 168/331 (50%), Gaps = 1/331 (0%)
Frame = +2
Query: 242 NPFAEPGELDNPFQDPAVIQHRPSPQYATLDVYNPFETRXXXXXXXXXXXXXXXXXXXXX 421
NPFA+P ++ NPFQDP+V Q +PQ + L +NPF
Sbjct: 7 NPFADPVDV-NPFQDPSVTQLTNAPQ-SGLAEFNPFSETNAATTVPATQAPGPSQPAV-- 62
Query: 422 LQSSRKLSPTEPKNYGSYXXXXXXXXXXXXXXXXXXELNRKAEELDRRERELQHAALGGT 601
LQ S + + P+ + EL+RKA EL+R+ERELQ+ A
Sbjct: 63 LQPSVEPAQPTPQAVAA--------AAQAGLLRQQEELDRKAAELERKERELQNTA-ANL 113
Query: 602 ATRQNNWPPLPSFCPVQPCFFQDISMEIPQEFQKTVSTMYYLWMCSTXXXXXXXXXXXXS 781
R NNWPPLPS+CPV+PCF+QD S EIP ++Q+ +YYLWM +
Sbjct: 114 HVRDNNWPPLPSWCPVKPCFYQDFSTEIPADYQRICKMLYYLWMLHSVTLFLNLLACLAW 173
Query: 782 FCVETNTGSGFGLSILWILLFTPCSFVCWYRPMYKAXXXXXXXXXXXXXXXXXVQDVLYV 961
F + G+ FGLSILW L+FTPC+F+CWYRP+YKA Q +Y
Sbjct: 174 FTSDAANGTAFGLSILWFLIFTPCAFLCWYRPIYKAFRSDNSFSFFVFFFVFFCQIGIYF 233
Query: 962 LQAIGIPGWGFSGWISAL-MLVNTTRXXXXXXXXXXXXXTGIAVLGIVMLKRIHSLYRRT 1138
+Q IG+P G SGW++AL + N T A L + +L+R+H+ YRRT
Sbjct: 234 IQLIGLPNLGTSGWLAALSTMKNGPLAVTIIMMVVAGFFTLCAGLSLFLLQRVHAFYRRT 293
Query: 1139 GASFQKAQQEFAGGGLLHPAGRNATANEPPG 1231
GASFQ+AQ+EF+ G R A ++ G
Sbjct: 294 GASFQQAQEEFSQGIFSSRTFRGAASSAARG 324
>ref|NP_064666.1| secretory carrier-associated membrane protein 5 [Mus musculus].
Length = 235
Score = 159 bits (402), Expect = 4e-39
Identities = 76/220 (34%), Positives = 112/220 (50%)
Frame = +2
Query: 602 ATRQNNWPPLPSFCPVQPCFFQDISMEIPQEFQKTVSTMYYLWMCSTXXXXXXXXXXXXS 781
A + NN+PPLP F P++PCF+QD +IP + +YYLWM ++ +
Sbjct: 2 AEKVNNFPPLPKFIPLKPCFYQDFEADIPPQHLSLTKRLYYLWMLNS-VTLAVNLVGCLA 60
Query: 782 FCVETNTGSGFGLSILWILLFTPCSFVCWYRPMYKAXXXXXXXXXXXXXXXXXVQDVLYV 961
+ + + FGL+ LW++LFTPCS+VCW+RP+YKA Q V+ +
Sbjct: 61 WLIGGGGATNFGLAFLWLILFTPCSYVCWFRPIYKAFKTDSSFSFMAFFFTFMAQLVISI 120
Query: 962 LQAIGIPGWGFSGWISALMLVNTTRXXXXXXXXXXXXXTGIAVLGIVMLKRIHSLYRRTG 1141
+QA+GIPGWG GWI+ + T T +AV + L +H YR +G
Sbjct: 121 IQAVGIPGWGVCGWIATISFFGTNIGSAVVMLIPTVMFTVVAVFSFIALSMVHKFYRGSG 180
Query: 1142 ASFQKAQQEFAGGGLLHPAGRNATANEPPGPAKYAFGAPE 1261
SF KAQ+E+ G +P + A N G A+ A P+
Sbjct: 181 GSFSKAQEEWTTGAWKNPHVQQAAQNAAMGAAQGAMNQPQ 220
>ref|NP_062521.1| secretory carrier-associated membrane protein 4 [Mus musculus].
Length = 230
Score = 152 bits (383), Expect = 7e-37
Identities = 80/212 (37%), Positives = 113/212 (53%), Gaps = 2/212 (0%)
Frame = +2
Query: 602 ATRQNNWPPLPSFCPVQPCFFQDISMEIPQEFQKTVSTMYYLWM--CSTXXXXXXXXXXX 775
A ++NN+PPLP F P++PCF+QD S EIP E Q V +Y LWM C+T
Sbjct: 2 AGKENNFPPLPPFLPLKPCFYQDFSDEIPVEHQVLVKRIYRLWMFYCAT---LGVNLVAC 58
Query: 776 XSFCVETNTGSGFGLSILWILLFTPCSFVCWYRPMYKAXXXXXXXXXXXXXXXXXVQDVL 955
++ + G+ FGL++LW++LFTPCS+VCW+RP YKA Q VL
Sbjct: 59 LAWWIAGGAGANFGLALLWLVLFTPCSYVCWFRPAYKAFRADSSFNFMTFFFIFGAQFVL 118
Query: 956 YVLQAIGIPGWGFSGWISALMLVNTTRXXXXXXXXXXXXXTGIAVLGIVMLKRIHSLYRR 1135
V+QAIG GWG GW++A+ T+ + A++ V + ++H +YR
Sbjct: 119 TVIQAIGFSGWGACGWLAAVGFFGTSVGAAVVMLVPAILFSLSALVMAVTIVKVHRIYRG 178
Query: 1136 TGASFQKAQQEFAGGGLLHPAGRNATANEPPG 1231
G S QKAQ E++ G +P R A N G
Sbjct: 179 AGGSLQKAQTEWSAGTWRNPPSREAQFNSFSG 210
Database: RefSeq44_MP.fasta
Posted date: Nov 15, 2010 4:36 PM
Number of letters in database: 15,452,059
Number of sequences in database: 29,866
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 29866
Number of Hits to DB: 40,720,861
Number of extensions: 1143853
Number of successful extensions: 4381
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 4329
Number of HSP's successfully gapped: 5
Length of query: 422
Length of database: 15,452,059
Length adjustment: 104
Effective length of query: 318
Effective length of database: 12,345,995
Effective search space: 3926026410
Effective search space used: 3926026410
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)
Search to RefSeqSP_Rel44
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20101001C-002279
(1268 letters)
Database: RefSeq44_SP.fasta
20,576 sequences; 9,542,844 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001172098.1| secretory carrier membrane protein 3 [Sus sc... 475 e-134
Alignment gi|NP_999410.1| secretory carrier-associated membrane protein 1... 224 7e-59
Alignment gi|XP_001927445.1| PREDICTED: secretory carrier-associated memb... 217 8e-57
Alignment gi|XP_001924607.1| PREDICTED: secretory carrier-associated memb... 158 5e-39
Alignment gi|XP_003123066.1| PREDICTED: hypothetical protein LOC100513717... 149 4e-36
Alignment gi|XP_003128546.1| PREDICTED: secretory carrier-associated memb... 124 1e-28
Alignment gi|XP_001924761.1| PREDICTED: secretory carrier-associated memb... 107 1e-23
>ref|NP_001172098.1| secretory carrier membrane protein 3 [Sus scrofa].
Length = 347
Score = 475 bits (1222), Expect = e-134
Identities = 244/342 (71%), Positives = 246/342 (71%)
Frame = +2
Query: 233 DGGNPFAEPGELDNPFQDPAVIQHRPSPQYATLDVYNPFETRXXXXXXXXXXXXXXXXXX 412
DGGNPFAEPGELDNPFQDPAVIQHRPSPQYATLDVYNPFETR
Sbjct: 6 DGGNPFAEPGELDNPFQDPAVIQHRPSPQYATLDVYNPFETREPPPSYEAPAPVPVAPPS 65
Query: 413 XXXLQSSRKLSPTEPKNYGSYXXXXXXXXXXXXXXXXXXELNRKAEELDRRERELQHAAL 592
LQSSRKLSPTEPKNYGSY ELNRKAEELDRRERELQHAAL
Sbjct: 66 AAPLQSSRKLSPTEPKNYGSYSTQASAAAATAELLKKQEELNRKAEELDRRERELQHAAL 125
Query: 593 GGTATRQNNWPPLPSFCPVQPCFFQDISMEIPQEFQKTVSTMYYLWMCSTXXXXXXXXXX 772
GGTATRQNNWPPLPSFCPVQPCFFQDISMEIPQEFQKTVSTMYYLWMCST
Sbjct: 126 GGTATRQNNWPPLPSFCPVQPCFFQDISMEIPQEFQKTVSTMYYLWMCSTLALLLNFLAC 185
Query: 773 XXSFCVETNTGSGFGLSILWILLFTPCSFVCWYRPMYKAXXXXXXXXXXXXXXXXXVQDV 952
SFCVETNTGSGFGLSILWILLFTPCSFVCWYRPMYKA VQDV
Sbjct: 186 LASFCVETNTGSGFGLSILWILLFTPCSFVCWYRPMYKAFRSDSSFNFFVFFFIFFVQDV 245
Query: 953 LYVLQAIGIPGWGFSGWISALMLVNTTRXXXXXXXXXXXXXTGIAVLGIVMLKRIHSLYR 1132
LYVLQAIGIPGWGFSGWISALMLVNT TGIAVLGIVMLKRIHSLYR
Sbjct: 246 LYVLQAIGIPGWGFSGWISALMLVNTNAAVAVLMLLVALFFTGIAVLGIVMLKRIHSLYR 305
Query: 1133 RTGASFQKAQQEFAGGGLLHPAGRNATANEPPGPAKYAFGAP 1258
RTGASFQKAQQEFA G +PA R A AN G A+ AF AP
Sbjct: 306 RTGASFQKAQQEFAAGVFSNPAVRTAAANAAAGAAENAFRAP 347
>ref|NP_999410.1| secretory carrier-associated membrane protein 1 [Sus scrofa].
Length = 338
Score = 224 bits (571), Expect = 7e-59
Identities = 137/328 (41%), Positives = 168/328 (51%), Gaps = 2/328 (0%)
Frame = +2
Query: 242 NPFAEPGELDNPFQDPAVIQ-HRPSPQYATLDVYNPFETRXXXXXXXXXXXXXXXXXXXX 418
NPFA+P +L+NPF+DP+V Q R P LD YNPF
Sbjct: 7 NPFADP-DLNNPFKDPSVTQVTRNVPP--GLDEYNPFSDSRTPPPGNVKMPNVPSTQPAI 63
Query: 419 XLQSSRKLSPTEPKNYGSYXXXXXXXXXXXXXXXXXXE-LNRKAEELDRRERELQHAALG 595
+ PTE + +Y E L RKA ELDRRERE+Q+ +
Sbjct: 64 -------MKPTE--EHPAYTQIAKEHALAQAELLKRQEELERKAAELDRREREMQNLSQH 114
Query: 596 GTATRQNNWPPLPSFCPVQPCFFQDISMEIPQEFQKTVSTMYYLWMCSTXXXXXXXXXXX 775
G R+NNWPPLP PV PCF+QD S++IP EFQKTV MYYLWM
Sbjct: 115 G---RKNNWPPLPGNFPVGPCFYQDFSVDIPVEFQKTVKIMYYLWMFHAVTLFLNIFGCL 171
Query: 776 XSFCVETNTGSGFGLSILWILLFTPCSFVCWYRPMYKAXXXXXXXXXXXXXXXXXVQDVL 955
FCV+ + G FGLSILW LLFTPCSFVCWYRP+Y A Q +
Sbjct: 172 AWFCVDPSRGVDFGLSILWFLLFTPCSFVCWYRPLYGAFRSDSSFRFFVFFFVYICQFAV 231
Query: 956 YVLQAIGIPGWGFSGWISALMLVNTTRXXXXXXXXXXXXXTGIAVLGIVMLKRIHSLYRR 1135
+VLQA G WG GWIS+L +N + T AV+ +VM K++H LYR
Sbjct: 232 HVLQAAGFHNWGNCGWISSLTGLNQSIPVGIMMIIIAALFTASAVISLVMFKKVHGLYRT 291
Query: 1136 TGASFQKAQQEFAGGGLLHPAGRNATAN 1219
TGASF+KAQQEFA G + + + A AN
Sbjct: 292 TGASFEKAQQEFATGVMSNKTVQTAAAN 319
>ref|XP_001927445.1| PREDICTED: secretory carrier-associated membrane protein 2-like [Sus
scrofa].
Length = 328
Score = 217 bits (553), Expect = 8e-57
Identities = 124/313 (39%), Positives = 166/313 (53%)
Frame = +2
Query: 242 NPFAEPGELDNPFQDPAVIQHRPSPQYATLDVYNPFETRXXXXXXXXXXXXXXXXXXXXX 421
NPFA+P ++ NPFQDP+V Q +PQ L +NPF
Sbjct: 7 NPFADPVDV-NPFQDPSVTQLTNAPQ-GGLAEFNPFSETNAATTVPVTQLPGPSQPAV-- 62
Query: 422 LQSSRKLSPTEPKNYGSYXXXXXXXXXXXXXXXXXXELNRKAEELDRRERELQHAALGGT 601
LQ S + PT+P EL+RKA EL+R+ERELQ+ +
Sbjct: 63 LQPS--VEPTQPTPQA------VASAAQASLLRQQEELDRKAAELERKERELQNT-VANL 113
Query: 602 ATRQNNWPPLPSFCPVQPCFFQDISMEIPQEFQKTVSTMYYLWMCSTXXXXXXXXXXXXS 781
R+NNWPPLP +CP++PCF+QD S EIP ++Q+ +YYLWM +
Sbjct: 114 HVRENNWPPLPIWCPIKPCFYQDFSTEIPADYQRICKMLYYLWMLHSVTLFLNLLACLAW 173
Query: 782 FCVETNTGSGFGLSILWILLFTPCSFVCWYRPMYKAXXXXXXXXXXXXXXXXXVQDVLYV 961
F V+T+ G FGLSILW ++FTPC+F+CWYRP+YKA Q +Y+
Sbjct: 174 FLVDTSRGVDFGLSILWFVIFTPCAFLCWYRPIYKAFRSDNSFSFFVFFFVFFCQIGIYI 233
Query: 962 LQAIGIPGWGFSGWISALMLVNTTRXXXXXXXXXXXXXTGIAVLGIVMLKRIHSLYRRTG 1141
+Q +GIP G SGWI+AL + T AVL + +LKR+HSLYRRTG
Sbjct: 234 IQLVGIPSLGDSGWIAALSTLKEDLAVSIIMMVVAGFFTLCAVLSLFLLKRVHSLYRRTG 293
Query: 1142 ASFQKAQQEFAGG 1180
ASFQ+AQ+EF+ G
Sbjct: 294 ASFQQAQEEFSQG 306
>ref|XP_001924607.1| PREDICTED: secretory carrier-associated membrane protein 5-like [Sus
scrofa].
Length = 235
Score = 158 bits (400), Expect = 5e-39
Identities = 76/220 (34%), Positives = 112/220 (50%)
Frame = +2
Query: 602 ATRQNNWPPLPSFCPVQPCFFQDISMEIPQEFQKTVSTMYYLWMCSTXXXXXXXXXXXXS 781
A + NN+PPLP F P++PCF+QD +IP + +YYLWM ++ +
Sbjct: 2 AEKVNNFPPLPKFIPLKPCFYQDFEADIPPQHLSMTKRLYYLWMLNS-VTLAVNLVGCLA 60
Query: 782 FCVETNTGSGFGLSILWILLFTPCSFVCWYRPMYKAXXXXXXXXXXXXXXXXXVQDVLYV 961
+ + + FGL+ LW++LFTPCS+VCW+RP+YKA Q V+ +
Sbjct: 61 WLIGGGGATNFGLAFLWLILFTPCSYVCWFRPIYKAFKTDSSFSFMAFFFTFMAQLVISI 120
Query: 962 LQAIGIPGWGFSGWISALMLVNTTRXXXXXXXXXXXXXTGIAVLGIVMLKRIHSLYRRTG 1141
+QA+GIPGWG GWI+ + T T +AV + L +H YR +G
Sbjct: 121 IQAVGIPGWGVCGWIATISFFGTNVGSAVVMLIPTIMFTVMAVFSFIALSMVHKFYRGSG 180
Query: 1142 ASFQKAQQEFAGGGLLHPAGRNATANEPPGPAKYAFGAPE 1261
SF KAQ+E+ G +P + A N G A+ A P+
Sbjct: 181 GSFSKAQEEWTTGAWKNPHVQQAAQNAAMGAAQGAMNQPQ 220
>ref|XP_003123066.1| PREDICTED: hypothetical protein LOC100513717 [Sus scrofa].
Length = 681
Score = 149 bits (375), Expect = 4e-36
Identities = 75/209 (35%), Positives = 111/209 (53%), Gaps = 2/209 (0%)
Frame = +2
Query: 611 QNNWPPLPSFCPVQPCFFQDISMEIPQEFQKTVSTMYYLWM--CSTXXXXXXXXXXXXSF 784
+NN+PPLP F P++PCF+Q+ S EIP E Q V +Y LW+ C+T ++
Sbjct: 456 ENNFPPLPKFIPLKPCFYQNFSDEIPIEHQVLVKRIYQLWLFYCAT---LGVNLVACLAW 512
Query: 785 CVETNTGSGFGLSILWILLFTPCSFVCWYRPMYKAXXXXXXXXXXXXXXXXXVQDVLYVL 964
+ +G+ FGL+++W+LLF+PC +VCW+RP YKA Q VL V+
Sbjct: 513 WIAAGSGANFGLALVWLLLFSPCGYVCWFRPAYKAFRSDSSFNFMAFFFIFGAQFVLAVI 572
Query: 965 QAIGIPGWGFSGWISALMLVNTTRXXXXXXXXXXXXXTGIAVLGIVMLKRIHSLYRRTGA 1144
QAIG GWG GW++A+ + A + +++ ++H +YR TG
Sbjct: 573 QAIGFSGWGTCGWLAAIGFFQINVGAAVVMLLPAIMFSVSAAIMAIVIMKVHRIYRGTGG 632
Query: 1145 SFQKAQQEFAGGGLLHPAGRNATANEPPG 1231
SFQKAQ E++ G +P R A N G
Sbjct: 633 SFQKAQTEWSTGAWRNPPSREAQYNNFSG 661
>ref|XP_003128546.1| PREDICTED: secretory carrier-associated membrane protein 2-like,
partial [Sus scrofa].
Length = 170
Score = 124 bits (311), Expect = 1e-28
Identities = 61/133 (45%), Positives = 80/133 (60%)
Frame = +2
Query: 782 FCVETNTGSGFGLSILWILLFTPCSFVCWYRPMYKAXXXXXXXXXXXXXXXXXVQDVLYV 961
F V+T+ G FGLSILW ++FTPC+F+CWYRP+YKA Q +Y+
Sbjct: 16 FLVDTSRGVDFGLSILWFVIFTPCAFLCWYRPIYKAFRSDNSFSFFVFFFVFFCQIGIYI 75
Query: 962 LQAIGIPGWGFSGWISALMLVNTTRXXXXXXXXXXXXXTGIAVLGIVMLKRIHSLYRRTG 1141
+Q +GIP G SGWI+AL + T AVL + +LKR+HSLYRRTG
Sbjct: 76 IQLVGIPSLGDSGWIAALSTLKEDLAVSIIMMVVAGFFTLCAVLSLFLLKRVHSLYRRTG 135
Query: 1142 ASFQKAQQEFAGG 1180
ASFQ+AQ+EF+ G
Sbjct: 136 ASFQQAQEEFSQG 148
>ref|XP_001924761.1| PREDICTED: secretory carrier-associated membrane protein 2-like
[Sus scrofa].
Length = 246
Score = 107 bits (267), Expect = 1e-23
Identities = 64/165 (38%), Positives = 86/165 (52%)
Frame = +2
Query: 242 NPFAEPGELDNPFQDPAVIQHRPSPQYATLDVYNPFETRXXXXXXXXXXXXXXXXXXXXX 421
NPFA+P ++ NPFQDP+V Q +PQ L +NPF
Sbjct: 7 NPFADPVDV-NPFQDPSVTQLTNAPQ-GGLAEFNPFSETNAATTVPVTQLPGPSQPAV-- 62
Query: 422 LQSSRKLSPTEPKNYGSYXXXXXXXXXXXXXXXXXXELNRKAEELDRRERELQHAALGGT 601
LQ S + PT+P EL+RKA EL+R+ERELQ+ +
Sbjct: 63 LQPS--VEPTQPTPQA------VASAAQASLLRQQEELDRKAAELERKERELQNT-VANL 113
Query: 602 ATRQNNWPPLPSFCPVQPCFFQDISMEIPQEFQKTVSTMYYLWMC 736
R+NNWPPLP +CP++PCF+QD S EIP ++Q+ +YYLWMC
Sbjct: 114 HVRENNWPPLPIWCPIKPCFYQDFSTEIPADYQRICKMLYYLWMC 158
Database: RefSeq44_SP.fasta
Posted date: Nov 15, 2010 4:36 PM
Number of letters in database: 9,542,844
Number of sequences in database: 20,576
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 20576
Number of Hits to DB: 26,172,657
Number of extensions: 771404
Number of successful extensions: 3131
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 3107
Number of HSP's successfully gapped: 7
Length of query: 422
Length of database: 9,542,844
Length adjustment: 100
Effective length of query: 322
Effective length of database: 7,485,244
Effective search space: 2410248568
Effective search space used: 2410248568
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)