Search to RefSeqBP_Rel44
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20101001C-002623
(1819 letters)
Database: RefSeq44_BP.fasta
33,615 sequences; 18,071,151 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_001095726.1| lanC-like protein 2 [Bos taurus]. 813 0.0
Alignment gi|NP_001069695.1| lanC-like protein 1 [Bos taurus]. 485 e-137
Alignment gi|XP_002700274.1| PREDICTED: LanC lantibiotic synthetase compo... 208 1e-53
Alignment gi|XP_002706107.1| PREDICTED: LanC lantibiotic synthetase compo... 180 3e-45
>ref|NP_001095726.1| lanC-like protein 2 [Bos taurus].
Length = 433
Score = 813 bits (2100), Expect = 0.0
Identities = 391/433 (90%), Positives = 406/433 (93%)
Frame = +3
Query: 345 MEERAFPNPFPDYXXXXXXXXXXXXXXXXXLTPEELGLPFHSDGKIIHNFTRRIQSKIKD 524
ME+RAFPNPFPDY L+PEELGLPFHSDGKII+NFTRRIQ+KIKD
Sbjct: 1 MEDRAFPNPFPDYEAAAERQAEEPPCSRTPLSPEELGLPFHSDGKIINNFTRRIQTKIKD 60
Query: 525 LLQQMEEGLKTADPHDCSAYTGWTGIALLYLQLYRVTCDQNYLLRSLDYVKRTLRNLNGR 704
LLQQMEEGLKTADPHDCSAYTGWTGIALLYLQLYRVTCDQ+YLLRSLDYVKRTLRNLNGR
Sbjct: 61 LLQQMEEGLKTADPHDCSAYTGWTGIALLYLQLYRVTCDQSYLLRSLDYVKRTLRNLNGR 120
Query: 705 RVTFLCGDAGPLAVGAVVYHKLKSDGESQECITKLLQLQRTIVCRDSDLPDELLFGRAGY 884
RVTFLCGDAGPLAVGAVVYHKLKSD ESQECITKLLQLQRTIVCRDSDLPDELL+GRAGY
Sbjct: 121 RVTFLCGDAGPLAVGAVVYHKLKSDCESQECITKLLQLQRTIVCRDSDLPDELLYGRAGY 180
Query: 885 LYALLYVNTEMGPGAVCESAIKEVVDAIIDSGKTLSKEERKAERCPLLYQWHRKQYVGAA 1064
LYALLYVNTE+GPGAVCESAIKEVV+AII+SGK LSKEE+K ERCPLLYQWHRKQYVGAA
Sbjct: 181 LYALLYVNTEIGPGAVCESAIKEVVNAIIESGKALSKEEKKVERCPLLYQWHRKQYVGAA 240
Query: 1065 HGMAGIYYMLMQPAAKVDQETLTEMVKPSIDYMRHKRFRSGNYPSSLSNETDRLVHWCHG 1244
HGMAGIYYMLMQPAAKVDQETLTEMVKPSIDYMRHKRFRSGNYPSSLSNETDRLVHWCHG
Sbjct: 241 HGMAGIYYMLMQPAAKVDQETLTEMVKPSIDYMRHKRFRSGNYPSSLSNETDRLVHWCHG 300
Query: 1245 APGVIHTLMQAYKVFKEEKYLRDAVECSDVIWQRGLLRKGYGICHGTAGNGYSFLSLYRL 1424
APGVIH LMQA+KVFKEEKYL+DAVECSDVIWQRGLLRKGYGICHGTAGNGYSFLSLY +
Sbjct: 301 APGVIHVLMQAHKVFKEEKYLKDAVECSDVIWQRGLLRKGYGICHGTAGNGYSFLSLYHI 360
Query: 1425 TQDKKYLYRACKFAEWCLEYGAHGCRIPDRPYSLFEGMAGAIHLLSDILAPETARFPAFE 1604
TQDKKYLYRACKFAEWCLEYGAHGCRIPDRPYSLFEGMAG IH LSDILAPE +RFPAFE
Sbjct: 361 TQDKKYLYRACKFAEWCLEYGAHGCRIPDRPYSLFEGMAGTIHFLSDILAPEASRFPAFE 420
Query: 1605 LGSSERDPKVQKD 1643
L SS+RD KVQKD
Sbjct: 421 LSSSQRDTKVQKD 433
>ref|NP_001069695.1| lanC-like protein 1 [Bos taurus].
Length = 399
Score = 485 bits (1249), Expect = e-137
Identities = 227/421 (53%), Positives = 299/421 (71%)
Frame = +3
Query: 345 MEERAFPNPFPDYXXXXXXXXXXXXXXXXXLTPEELGLPFHSDGKIIHNFTRRIQSKIKD 524
M +RAFPNP+ DY F S G++ F++R+ +KI++
Sbjct: 1 MAQRAFPNPYADYNKSLAEGY------------------FDSAGRLTPEFSQRLNNKIRE 42
Query: 525 LLQQMEEGLKTADPHDCSAYTGWTGIALLYLQLYRVTCDQNYLLRSLDYVKRTLRNLNGR 704
LLQQME GLK+ADP D + YTGW GIA+LYL LY V D NYL + YVK++L +L+
Sbjct: 43 LLQQMERGLKSADPRDSTVYTGWAGIAVLYLHLYDVFGDPNYLQMAHGYVKQSLNSLSKH 102
Query: 705 RVTFLCGDAGPLAVGAVVYHKLKSDGESQECITKLLQLQRTIVCRDSDLPDELLFGRAGY 884
+TFLCGD GPLAV AVV+HK+ ++ +++ECIT+L+ L + D P E+L+GR GY
Sbjct: 103 SITFLCGDGGPLAVAAVVHHKMNNEKQAEECITRLIHLNKI----DRHAPSEMLYGRMGY 158
Query: 885 LYALLYVNTEMGPGAVCESAIKEVVDAIIDSGKTLSKEERKAERCPLLYQWHRKQYVGAA 1064
+ ALL+VN G + +S I+++ + ++ SG+ L+++ R PL+Y+W+++ YVGAA
Sbjct: 159 ISALLFVNKNFGEEKIPQSHIQQICETVLTSGEDLARKRRFTGETPLMYEWYQEYYVGAA 218
Query: 1065 HGMAGIYYMLMQPAAKVDQETLTEMVKPSIDYMRHKRFRSGNYPSSLSNETDRLVHWCHG 1244
HG+AGIYY LMQP+ +V L +VKPS+DY+ +F SGNYP + + D L+HWCHG
Sbjct: 219 HGLAGIYYYLMQPSLQVSHAKLHNLVKPSVDYVCQLKFPSGNYPPCVDDSRDLLIHWCHG 278
Query: 1245 APGVIHTLMQAYKVFKEEKYLRDAVECSDVIWQRGLLRKGYGICHGTAGNGYSFLSLYRL 1424
APGVI+ L QAYKVFKEE+YL DA +C+DVIWQ GLL+KGYG+CHGTAGN Y+FLSLY L
Sbjct: 279 APGVIYMLTQAYKVFKEERYLNDAYQCADVIWQYGLLKKGYGLCHGTAGNAYAFLSLYSL 338
Query: 1425 TQDKKYLYRACKFAEWCLEYGAHGCRIPDRPYSLFEGMAGAIHLLSDILAPETARFPAFE 1604
TQD KYLYRACKFAEWCL+YG HGCR PD P+SLFEGMAG I+ L+D+L P ARFPAFE
Sbjct: 339 TQDAKYLYRACKFAEWCLDYGEHGCRTPDTPFSLFEGMAGTIYFLADLLVPTKARFPAFE 398
Query: 1605 L 1607
L
Sbjct: 399 L 399
>ref|XP_002700274.1| PREDICTED: LanC lantibiotic synthetase component C-like 3 (bacterial)
[Bos taurus].
Length = 420
Score = 208 bits (530), Expect = 1e-53
Identities = 122/309 (39%), Positives = 174/309 (56%), Gaps = 8/309 (2%)
Frame = +3
Query: 705 RVTFLCGDAGPLAVGAVVYHKLKSDGESQECITKLLQLQRTIVCRDSDL----PDELLFG 872
R FL G AG AV +VYH L Q + K L VC DEL G
Sbjct: 117 RAAFLLGGAGVYAVATLVYHALGRPDYVQP-LGKFRAL--CAVCAPVSFLECGSDELFVG 173
Query: 873 RAGYLYALLYVNTEMGPGAVCESAIKEVVDAIIDSGKTLSKEERKAERCPLLYQWHRKQY 1052
RAGYL A L + ++ + + IK + AI+DSGK + ++RK PL+Y ++ +Y
Sbjct: 174 RAGYLCAALVLKQKLAQEVLTPAQIKSICQAILDSGKQYAMKKRKP--FPLMYSYYGTEY 231
Query: 1053 VGAAHGMAGIYYMLMQPAAKVDQETLTEMVKPSIDYMRHKRFRSGNYPSSLSNETDR--- 1223
+GAAHG++ I ML+ + E+V S+D++ + ++ N+P L +R
Sbjct: 232 LGAAHGLSSILQMLLSYHEHLKPSD-QELVWQSVDFLMEQE-QNCNWPPELGEAIERENE 289
Query: 1224 LVHWCHGAPGVIHTLMQAYKVFKEEKYLRDAVECSDVIWQRGLLRKGYGICHGTAGNGYS 1403
LVHWCHGAPG+ + +AY V K+ +YL + C ++ WQ+GLL+KG GICHG AG+ Y
Sbjct: 290 LVHWCHGAPGIAYLFAKAYLVSKKPQYLDTCIRCGELTWQKGLLKKGPGICHGVAGSAYV 349
Query: 1404 FLSLYRLTQDKKYLYRACKFAEWCL-EYGAHGCRIPDRPYSLFEGMAGAIHLLSDILAPE 1580
FL LYRLT + KY+YRA +FAE+ E G R+ + YSL+EG +G + L D+L P
Sbjct: 350 FLLLYRLTGNSKYIYRAQRFAEFLFTEEFKAGSRVLESIYSLYEGFSGTVCFLIDLLQPN 409
Query: 1581 TARFPAFEL 1607
A FP F +
Sbjct: 410 QAEFPLFSV 418
>ref|XP_002706107.1| PREDICTED: LanC lantibiotic synthetase component C-like 3
(bacterial), partial [Bos taurus].
Length = 306
Score = 180 bits (457), Expect = 3e-45
Identities = 94/225 (41%), Positives = 139/225 (61%), Gaps = 4/225 (1%)
Frame = +3
Query: 945 IKEVVDAIIDSGKTLSKEERKAERCPLLYQWHRKQYVGAAHGMAGIYYMLMQPAAKVDQE 1124
IK + AI+DSGK + ++RK PL+Y ++ +Y+GAAHG++ I ML+ +
Sbjct: 84 IKSICQAILDSGKQYAMKKRKP--FPLMYSYYGTEYLGAAHGLSSILQMLLSYHEHLKPS 141
Query: 1125 TLTEMVKPSIDYMRHKRFRSGNYPSSLSNETDR---LVHWCHGAPGVIHTLMQAYKVFKE 1295
E+V S+D++ + ++ N+P L +R LVHWCHGAPG+ + +AY V K+
Sbjct: 142 D-QELVWQSVDFLMEQE-QNCNWPPELGEAIERENELVHWCHGAPGIAYLFAKAYLVSKK 199
Query: 1296 EKYLRDAVECSDVIWQRGLLRKGYGICHGTAGNGYSFLSLYRLTQDKKYLYRACKFAEWC 1475
+YL + C ++ WQ+GLL+KG GICHG AG+ Y FL LYRLT + KY+YRA +FAE+
Sbjct: 200 PQYLDTCIRCGELTWQKGLLKKGPGICHGVAGSAYVFLLLYRLTGNSKYIYRAQRFAEFL 259
Query: 1476 L-EYGAHGCRIPDRPYSLFEGMAGAIHLLSDILAPETARFPAFEL 1607
E G R+ + YSL+EG +G + L D+L P A FP F +
Sbjct: 260 FTEEFKAGSRVLESIYSLYEGFSGTVCFLIDLLQPNQAEFPLFSV 304
Database: RefSeq44_BP.fasta
Posted date: Nov 15, 2010 4:36 PM
Number of letters in database: 18,071,151
Number of sequences in database: 33,615
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33615
Number of Hits to DB: 73,386,686
Number of extensions: 2143328
Number of successful extensions: 12539
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 12401
Number of HSP's successfully gapped: 4
Length of query: 606
Length of database: 18,071,151
Length adjustment: 108
Effective length of query: 498
Effective length of database: 14,440,731
Effective search space: 7191484038
Effective search space used: 7191484038
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqCP_Rel44
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20101001C-002623
(1819 letters)
Database: RefSeq44_CP.fasta
33,359 sequences; 18,921,627 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_540359.2| PREDICTED: similar to LanC-like protein 2 (Test... 751 0.0
Alignment gi|XP_536055.1| PREDICTED: similar to LanC-like protein 1 (40 k... 482 e-136
Alignment gi|XP_548943.2| PREDICTED: similar to LanC lantibiotic syntheta... 209 9e-54
>ref|XP_540359.2| PREDICTED: similar to LanC-like protein 2 (Testis-specific adriamycin
sensitivity protein) [Canis familiaris].
Length = 452
Score = 751 bits (1940), Expect = 0.0
Identities = 359/386 (93%), Positives = 374/386 (96%)
Frame = +3
Query: 477 KIIHNFTRRIQSKIKDLLQQMEEGLKTADPHDCSAYTGWTGIALLYLQLYRVTCDQNYLL 656
+I+ NFT+RIQ+KIKDLLQQMEEGLKTADPHDCSAYTGWTGIALLYLQLYRVTCDQ YLL
Sbjct: 67 RIVQNFTKRIQTKIKDLLQQMEEGLKTADPHDCSAYTGWTGIALLYLQLYRVTCDQTYLL 126
Query: 657 RSLDYVKRTLRNLNGRRVTFLCGDAGPLAVGAVVYHKLKSDGESQECITKLLQLQRTIVC 836
RSLDYVKRTLRNLNGRRVTFLCGDAGPLAVGAVVYHKLKSD ESQECITKLLQLQRTIVC
Sbjct: 127 RSLDYVKRTLRNLNGRRVTFLCGDAGPLAVGAVVYHKLKSDCESQECITKLLQLQRTIVC 186
Query: 837 RDSDLPDELLFGRAGYLYALLYVNTEMGPGAVCESAIKEVVDAIIDSGKTLSKEERKAER 1016
RDSDLPDELL+GRAGYLYALLY+NTE+GPG VCESAIKEVV AII+SGKTLS+EERKAER
Sbjct: 187 RDSDLPDELLYGRAGYLYALLYLNTEIGPGTVCESAIKEVVCAIIESGKTLSREERKAER 246
Query: 1017 CPLLYQWHRKQYVGAAHGMAGIYYMLMQPAAKVDQETLTEMVKPSIDYMRHKRFRSGNYP 1196
CPLLYQWHRKQYVGAAHGMAGIYYMLMQPAAKVDQETLTEMVKPSIDY+RHKRFRSGNYP
Sbjct: 247 CPLLYQWHRKQYVGAAHGMAGIYYMLMQPAAKVDQETLTEMVKPSIDYVRHKRFRSGNYP 306
Query: 1197 SSLSNETDRLVHWCHGAPGVIHTLMQAYKVFKEEKYLRDAVECSDVIWQRGLLRKGYGIC 1376
SSLSNETDRLVHWCHGAPGVIH LMQAYKVFKEEKYL+DA+ECSDVIWQRGLLRKGYGIC
Sbjct: 307 SSLSNETDRLVHWCHGAPGVIHMLMQAYKVFKEEKYLKDAMECSDVIWQRGLLRKGYGIC 366
Query: 1377 HGTAGNGYSFLSLYRLTQDKKYLYRACKFAEWCLEYGAHGCRIPDRPYSLFEGMAGAIHL 1556
HGTAGNGYSFLSLY LTQDKKYLYRACKFAEWCLEYGAHGCRIPDRPYSLFEGMAGAIH
Sbjct: 367 HGTAGNGYSFLSLYHLTQDKKYLYRACKFAEWCLEYGAHGCRIPDRPYSLFEGMAGAIHF 426
Query: 1557 LSDILAPETARFPAFELGSSERDPKV 1634
LSDILAPET+RFPAFEL +RD K+
Sbjct: 427 LSDILAPETSRFPAFELAPPQRDRKI 452
>ref|XP_536055.1| PREDICTED: similar to LanC-like protein 1 (40 kDa erythrocyte
membrane protein) (p40) [Canis familiaris].
Length = 399
Score = 482 bits (1240), Expect = e-136
Identities = 224/421 (53%), Positives = 301/421 (71%)
Frame = +3
Query: 345 MEERAFPNPFPDYXXXXXXXXXXXXXXXXXLTPEELGLPFHSDGKIIHNFTRRIQSKIKD 524
M +RAFPNP+ D+ F G++ F++R+ +KI++
Sbjct: 1 MAQRAFPNPYADFNKSLAESY------------------FDCAGRLTPEFSQRLNNKIRE 42
Query: 525 LLQQMEEGLKTADPHDCSAYTGWTGIALLYLQLYRVTCDQNYLLRSLDYVKRTLRNLNGR 704
LLQQME GLK+ADP D + YTGW GIALLYL LY V D YL + YVK++L +L R
Sbjct: 43 LLQQMERGLKSADPRDSTVYTGWAGIALLYLHLYDVFGDPAYLQMAHGYVKQSLNSLTKR 102
Query: 705 RVTFLCGDAGPLAVGAVVYHKLKSDGESQECITKLLQLQRTIVCRDSDLPDELLFGRAGY 884
+TFLCGDAGPLA+GAVVYHK+ ++ ++++CIT+L+ L + D P+E+L+GR GY
Sbjct: 103 SITFLCGDAGPLAIGAVVYHKMNNEKQAEDCITRLIHLNKI----DHHAPNEMLYGRMGY 158
Query: 885 LYALLYVNTEMGPGAVCESAIKEVVDAIIDSGKTLSKEERKAERCPLLYQWHRKQYVGAA 1064
+YALL+VN G + +S I+++ +A++ SG+ L+++ + PL+Y+W+++ YVGAA
Sbjct: 159 VYALLFVNKNFGVEKIPQSHIQQICEAVLTSGENLAQKRNFTAKTPLMYEWYQEYYVGAA 218
Query: 1065 HGMAGIYYMLMQPAAKVDQETLTEMVKPSIDYMRHKRFRSGNYPSSLSNETDRLVHWCHG 1244
HG+AGIYY+LMQP+ +V L +VKPS+DY+ +F SGNYP + + D LVHWCHG
Sbjct: 219 HGLAGIYYLLMQPSLQVSHVKLHNLVKPSVDYVCQLKFPSGNYPPCVDDNRDLLVHWCHG 278
Query: 1245 APGVIHTLMQAYKVFKEEKYLRDAVECSDVIWQRGLLRKGYGICHGTAGNGYSFLSLYRL 1424
+PGVI+ L+QAYK F+ E YL DA +C+DVIW+ GLLRKGYG+CHGTAGN Y+FL+LY L
Sbjct: 279 SPGVIYMLIQAYKAFRGEHYLNDAHQCADVIWRYGLLRKGYGLCHGTAGNAYAFLTLYNL 338
Query: 1425 TQDKKYLYRACKFAEWCLEYGAHGCRIPDRPYSLFEGMAGAIHLLSDILAPETARFPAFE 1604
TQD KYLYRACKFAEWCL+YG HGCR PD P+SLFEGMAG I+ L+D+L P ARFPAFE
Sbjct: 339 TQDMKYLYRACKFAEWCLDYGEHGCRTPDTPFSLFEGMAGTIYFLADLLVPTKARFPAFE 398
Query: 1605 L 1607
L
Sbjct: 399 L 399
>ref|XP_548943.2| PREDICTED: similar to LanC lantibiotic synthetase component C-like 3
[Canis familiaris].
Length = 420
Score = 209 bits (531), Expect = 9e-54
Identities = 122/309 (39%), Positives = 174/309 (56%), Gaps = 8/309 (2%)
Frame = +3
Query: 705 RVTFLCGDAGPLAVGAVVYHKLKSDGESQECITKLLQLQRTIVCRDSDL----PDELLFG 872
R FL G AG AV +VYH L Q + K L VC DEL G
Sbjct: 117 RAAFLLGGAGVYAVATLVYHALGRSDYVQP-LGKFRAL--CAVCAPVSFLECGSDELFVG 173
Query: 873 RAGYLYALLYVNTEMGPGAVCESAIKEVVDAIIDSGKTLSKEERKAERCPLLYQWHRKQY 1052
RAGYL A L + ++ + + IK + AI+DSGK + ++RK PL+Y ++ +Y
Sbjct: 174 RAGYLCAALVLKQKLAQEVLTPAQIKSICQAILDSGKQYAMKKRKP--FPLMYSYYGTEY 231
Query: 1053 VGAAHGMAGIYYMLMQPAAKVDQETLTEMVKPSIDYMRHKRFRSGNYPSSLSNETDR--- 1223
+GAAHG++ I ML+ + E+V S+D++ + ++ N+P L +R
Sbjct: 232 LGAAHGLSSILQMLLSYHEHLKPSD-QELVWQSVDFLMEQE-QNCNWPPELGEAIERENE 289
Query: 1224 LVHWCHGAPGVIHTLMQAYKVFKEEKYLRDAVECSDVIWQRGLLRKGYGICHGTAGNGYS 1403
LVHWCHGAPG+ + +AY V K+ +YL + C ++ WQ+GLL+KG GICHG AG+ Y
Sbjct: 290 LVHWCHGAPGIAYLFAKAYLVSKKPQYLDTCIRCGELTWQKGLLKKGPGICHGVAGSAYV 349
Query: 1404 FLSLYRLTQDKKYLYRACKFAEWCL-EYGAHGCRIPDRPYSLFEGMAGAIHLLSDILAPE 1580
FL LYRLT + KY+YRA +FAE+ E G R+ + YSL+EG +G + L D+L P
Sbjct: 350 FLLLYRLTGNSKYIYRAQRFAEFLFTEEFKAGSRVLESIYSLYEGFSGTVCFLIDLLQPN 409
Query: 1581 TARFPAFEL 1607
A FP F +
Sbjct: 410 QAEFPLFSV 418
Database: RefSeq44_CP.fasta
Posted date: Nov 15, 2010 4:36 PM
Number of letters in database: 18,921,627
Number of sequences in database: 33,359
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33359
Number of Hits to DB: 75,009,101
Number of extensions: 2166171
Number of successful extensions: 12883
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 12730
Number of HSP's successfully gapped: 3
Length of query: 606
Length of database: 18,921,627
Length adjustment: 109
Effective length of query: 497
Effective length of database: 15,285,496
Effective search space: 7596891512
Effective search space used: 7596891512
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqHP_Rel44
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20101001C-002623
(1819 letters)
Database: RefSeq44_HP.fasta
33,950 sequences; 18,324,212 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_061167.1| lanC-like protein 2 [Homo sapiens]. 792 0.0
Alignment gi|NP_006046.1| lanC-like protein 1 [Homo sapiens]. 485 e-137
Alignment gi|NP_001130047.1| lanC-like protein 1 [Homo sapiens]. 485 e-137
Alignment gi|NP_001130046.1| lanC-like protein 1 [Homo sapiens]. 485 e-137
Alignment gi|NP_001163802.1| lanC-like protein 3 isoform 2 [Homo sapiens]. 207 3e-53
Alignment gi|NP_940913.1| lanC-like protein 3 isoform 1 [Homo sapiens]. 175 1e-43
>ref|NP_061167.1| lanC-like protein 2 [Homo sapiens].
Length = 450
Score = 792 bits (2045), Expect = 0.0
Identities = 381/450 (84%), Positives = 408/450 (90%), Gaps = 5/450 (1%)
Frame = +3
Query: 291 MGETISRRLWFQGDWDAEMEERAFPNPFPDYXXXXXXXXXXXXXXXXXL-----TPEELG 455
MGET+S+RL +AEMEERAF NPFPDY T +E G
Sbjct: 1 MGETMSKRLKLHLGGEAEMEERAFVNPFPDYEAAAGALLASGAAEETGCVRPPATTDEPG 60
Query: 456 LPFHSDGKIIHNFTRRIQSKIKDLLQQMEEGLKTADPHDCSAYTGWTGIALLYLQLYRVT 635
LPFH DGKIIHNF RRIQ+KIKDLLQQMEEGLKTADPHDCSAYTGWTGIALLYLQLYRVT
Sbjct: 61 LPFHQDGKIIHNFIRRIQTKIKDLLQQMEEGLKTADPHDCSAYTGWTGIALLYLQLYRVT 120
Query: 636 CDQNYLLRSLDYVKRTLRNLNGRRVTFLCGDAGPLAVGAVVYHKLKSDGESQECITKLLQ 815
CDQ YLLRSLDYVKRTLRNLNGRRVTFLCGDAGPLAVGAV+YHKL+SD ESQEC+TKLLQ
Sbjct: 121 CDQTYLLRSLDYVKRTLRNLNGRRVTFLCGDAGPLAVGAVIYHKLRSDCESQECVTKLLQ 180
Query: 816 LQRTIVCRDSDLPDELLFGRAGYLYALLYVNTEMGPGAVCESAIKEVVDAIIDSGKTLSK 995
LQR++VC++SDLPDELL+GRAGYLYALLY+NTE+GPG VCESAIKEVV+AII+SGKTLS+
Sbjct: 181 LQRSVVCQESDLPDELLYGRAGYLYALLYLNTEIGPGTVCESAIKEVVNAIIESGKTLSR 240
Query: 996 EERKAERCPLLYQWHRKQYVGAAHGMAGIYYMLMQPAAKVDQETLTEMVKPSIDYMRHKR 1175
EERK ERCPLLYQWHRKQYVGAAHGMAGIYYMLMQPAAKVDQETLTEMVKPSIDY+RHK+
Sbjct: 241 EERKTERCPLLYQWHRKQYVGAAHGMAGIYYMLMQPAAKVDQETLTEMVKPSIDYVRHKK 300
Query: 1176 FRSGNYPSSLSNETDRLVHWCHGAPGVIHTLMQAYKVFKEEKYLRDAVECSDVIWQRGLL 1355
FRSGNYPSSLSNETDRLVHWCHGAPGVIH LMQAYKVFKEEKYL++A+ECSDVIWQRGLL
Sbjct: 301 FRSGNYPSSLSNETDRLVHWCHGAPGVIHMLMQAYKVFKEEKYLKEAMECSDVIWQRGLL 360
Query: 1356 RKGYGICHGTAGNGYSFLSLYRLTQDKKYLYRACKFAEWCLEYGAHGCRIPDRPYSLFEG 1535
RKGYGICHGTAGNGYSFLSLYRLTQDKKYLYRACKFAEWCL+YGAHGCRIPDRPYSLFEG
Sbjct: 361 RKGYGICHGTAGNGYSFLSLYRLTQDKKYLYRACKFAEWCLDYGAHGCRIPDRPYSLFEG 420
Query: 1536 MAGAIHLLSDILAPETARFPAFELGSSERD 1625
MAGAIH LSD+L PET+RFPAFEL SS+RD
Sbjct: 421 MAGAIHFLSDVLGPETSRFPAFELDSSKRD 450
>ref|NP_006046.1| lanC-like protein 1 [Homo sapiens].
Length = 399
Score = 485 bits (1248), Expect = e-137
Identities = 228/421 (54%), Positives = 302/421 (71%)
Frame = +3
Query: 345 MEERAFPNPFPDYXXXXXXXXXXXXXXXXXLTPEELGLPFHSDGKIIHNFTRRIQSKIKD 524
M +RAFPNP+ DY F + G++ F++R+ +KI++
Sbjct: 1 MAQRAFPNPYADYNKSLAEGY------------------FDAAGRLTPEFSQRLTNKIRE 42
Query: 525 LLQQMEEGLKTADPHDCSAYTGWTGIALLYLQLYRVTCDQNYLLRSLDYVKRTLRNLNGR 704
LLQQME GLK+ADP D + YTGW GIA+LYL LY V D YL + YVK++L L R
Sbjct: 43 LLQQMERGLKSADPRDGTGYTGWAGIAVLYLHLYDVFGDPAYLQLAHGYVKQSLNCLTKR 102
Query: 705 RVTFLCGDAGPLAVGAVVYHKLKSDGESQECITKLLQLQRTIVCRDSDLPDELLFGRAGY 884
+TFLCGDAGPLAV AV+YHK+ ++ ++++CIT+L+ L + D P+E+L+GR GY
Sbjct: 103 SITFLCGDAGPLAVAAVLYHKMNNEKQAEDCITRLIHLNKI----DPHAPNEMLYGRIGY 158
Query: 885 LYALLYVNTEMGPGAVCESAIKEVVDAIIDSGKTLSKEERKAERCPLLYQWHRKQYVGAA 1064
+YALL+VN G + +S I+++ + I+ SG+ L+++ + PL+Y+W+++ YVGAA
Sbjct: 159 IYALLFVNKNFGVEKIPQSHIQQICETILTSGENLARKRNFTAKSPLMYEWYQEYYVGAA 218
Query: 1065 HGMAGIYYMLMQPAAKVDQETLTEMVKPSIDYMRHKRFRSGNYPSSLSNETDRLVHWCHG 1244
HG+AGIYY LMQP+ +V Q L +VKPS+DY+ +F SGNYP + + D LVHWCHG
Sbjct: 219 HGLAGIYYYLMQPSLQVSQGKLHSLVKPSVDYVCQLKFPSGNYPPCIGDNRDLLVHWCHG 278
Query: 1245 APGVIHTLMQAYKVFKEEKYLRDAVECSDVIWQRGLLRKGYGICHGTAGNGYSFLSLYRL 1424
APGVI+ L+QAYKVF+EEKYL DA +C+DVIWQ GLL+KGYG+CHG+AGN Y+FL+LY L
Sbjct: 279 APGVIYMLIQAYKVFREEKYLCDAYQCADVIWQYGLLKKGYGLCHGSAGNAYAFLTLYNL 338
Query: 1425 TQDKKYLYRACKFAEWCLEYGAHGCRIPDRPYSLFEGMAGAIHLLSDILAPETARFPAFE 1604
TQD KYLYRACKFAEWCLEYG HGCR PD P+SLFEGMAG I+ L+D+L P ARFPAFE
Sbjct: 339 TQDMKYLYRACKFAEWCLEYGEHGCRTPDTPFSLFEGMAGTIYFLADLLVPTKARFPAFE 398
Query: 1605 L 1607
L
Sbjct: 399 L 399
>ref|NP_001130047.1| lanC-like protein 1 [Homo sapiens].
Length = 399
Score = 485 bits (1248), Expect = e-137
Identities = 228/421 (54%), Positives = 302/421 (71%)
Frame = +3
Query: 345 MEERAFPNPFPDYXXXXXXXXXXXXXXXXXLTPEELGLPFHSDGKIIHNFTRRIQSKIKD 524
M +RAFPNP+ DY F + G++ F++R+ +KI++
Sbjct: 1 MAQRAFPNPYADYNKSLAEGY------------------FDAAGRLTPEFSQRLTNKIRE 42
Query: 525 LLQQMEEGLKTADPHDCSAYTGWTGIALLYLQLYRVTCDQNYLLRSLDYVKRTLRNLNGR 704
LLQQME GLK+ADP D + YTGW GIA+LYL LY V D YL + YVK++L L R
Sbjct: 43 LLQQMERGLKSADPRDGTGYTGWAGIAVLYLHLYDVFGDPAYLQLAHGYVKQSLNCLTKR 102
Query: 705 RVTFLCGDAGPLAVGAVVYHKLKSDGESQECITKLLQLQRTIVCRDSDLPDELLFGRAGY 884
+TFLCGDAGPLAV AV+YHK+ ++ ++++CIT+L+ L + D P+E+L+GR GY
Sbjct: 103 SITFLCGDAGPLAVAAVLYHKMNNEKQAEDCITRLIHLNKI----DPHAPNEMLYGRIGY 158
Query: 885 LYALLYVNTEMGPGAVCESAIKEVVDAIIDSGKTLSKEERKAERCPLLYQWHRKQYVGAA 1064
+YALL+VN G + +S I+++ + I+ SG+ L+++ + PL+Y+W+++ YVGAA
Sbjct: 159 IYALLFVNKNFGVEKIPQSHIQQICETILTSGENLARKRNFTAKSPLMYEWYQEYYVGAA 218
Query: 1065 HGMAGIYYMLMQPAAKVDQETLTEMVKPSIDYMRHKRFRSGNYPSSLSNETDRLVHWCHG 1244
HG+AGIYY LMQP+ +V Q L +VKPS+DY+ +F SGNYP + + D LVHWCHG
Sbjct: 219 HGLAGIYYYLMQPSLQVSQGKLHSLVKPSVDYVCQLKFPSGNYPPCIGDNRDLLVHWCHG 278
Query: 1245 APGVIHTLMQAYKVFKEEKYLRDAVECSDVIWQRGLLRKGYGICHGTAGNGYSFLSLYRL 1424
APGVI+ L+QAYKVF+EEKYL DA +C+DVIWQ GLL+KGYG+CHG+AGN Y+FL+LY L
Sbjct: 279 APGVIYMLIQAYKVFREEKYLCDAYQCADVIWQYGLLKKGYGLCHGSAGNAYAFLTLYNL 338
Query: 1425 TQDKKYLYRACKFAEWCLEYGAHGCRIPDRPYSLFEGMAGAIHLLSDILAPETARFPAFE 1604
TQD KYLYRACKFAEWCLEYG HGCR PD P+SLFEGMAG I+ L+D+L P ARFPAFE
Sbjct: 339 TQDMKYLYRACKFAEWCLEYGEHGCRTPDTPFSLFEGMAGTIYFLADLLVPTKARFPAFE 398
Query: 1605 L 1607
L
Sbjct: 399 L 399
>ref|NP_001130046.1| lanC-like protein 1 [Homo sapiens].
Length = 399
Score = 485 bits (1248), Expect = e-137
Identities = 228/421 (54%), Positives = 302/421 (71%)
Frame = +3
Query: 345 MEERAFPNPFPDYXXXXXXXXXXXXXXXXXLTPEELGLPFHSDGKIIHNFTRRIQSKIKD 524
M +RAFPNP+ DY F + G++ F++R+ +KI++
Sbjct: 1 MAQRAFPNPYADYNKSLAEGY------------------FDAAGRLTPEFSQRLTNKIRE 42
Query: 525 LLQQMEEGLKTADPHDCSAYTGWTGIALLYLQLYRVTCDQNYLLRSLDYVKRTLRNLNGR 704
LLQQME GLK+ADP D + YTGW GIA+LYL LY V D YL + YVK++L L R
Sbjct: 43 LLQQMERGLKSADPRDGTGYTGWAGIAVLYLHLYDVFGDPAYLQLAHGYVKQSLNCLTKR 102
Query: 705 RVTFLCGDAGPLAVGAVVYHKLKSDGESQECITKLLQLQRTIVCRDSDLPDELLFGRAGY 884
+TFLCGDAGPLAV AV+YHK+ ++ ++++CIT+L+ L + D P+E+L+GR GY
Sbjct: 103 SITFLCGDAGPLAVAAVLYHKMNNEKQAEDCITRLIHLNKI----DPHAPNEMLYGRIGY 158
Query: 885 LYALLYVNTEMGPGAVCESAIKEVVDAIIDSGKTLSKEERKAERCPLLYQWHRKQYVGAA 1064
+YALL+VN G + +S I+++ + I+ SG+ L+++ + PL+Y+W+++ YVGAA
Sbjct: 159 IYALLFVNKNFGVEKIPQSHIQQICETILTSGENLARKRNFTAKSPLMYEWYQEYYVGAA 218
Query: 1065 HGMAGIYYMLMQPAAKVDQETLTEMVKPSIDYMRHKRFRSGNYPSSLSNETDRLVHWCHG 1244
HG+AGIYY LMQP+ +V Q L +VKPS+DY+ +F SGNYP + + D LVHWCHG
Sbjct: 219 HGLAGIYYYLMQPSLQVSQGKLHSLVKPSVDYVCQLKFPSGNYPPCIGDNRDLLVHWCHG 278
Query: 1245 APGVIHTLMQAYKVFKEEKYLRDAVECSDVIWQRGLLRKGYGICHGTAGNGYSFLSLYRL 1424
APGVI+ L+QAYKVF+EEKYL DA +C+DVIWQ GLL+KGYG+CHG+AGN Y+FL+LY L
Sbjct: 279 APGVIYMLIQAYKVFREEKYLCDAYQCADVIWQYGLLKKGYGLCHGSAGNAYAFLTLYNL 338
Query: 1425 TQDKKYLYRACKFAEWCLEYGAHGCRIPDRPYSLFEGMAGAIHLLSDILAPETARFPAFE 1604
TQD KYLYRACKFAEWCLEYG HGCR PD P+SLFEGMAG I+ L+D+L P ARFPAFE
Sbjct: 339 TQDMKYLYRACKFAEWCLEYGEHGCRTPDTPFSLFEGMAGTIYFLADLLVPTKARFPAFE 398
Query: 1605 L 1607
L
Sbjct: 399 L 399
>ref|NP_001163802.1| lanC-like protein 3 isoform 2 [Homo sapiens].
Length = 420
Score = 207 bits (526), Expect = 3e-53
Identities = 121/309 (39%), Positives = 174/309 (56%), Gaps = 8/309 (2%)
Frame = +3
Query: 705 RVTFLCGDAGPLAVGAVVYHKLKSDGESQECITKLLQLQRTIVCRDSDL----PDELLFG 872
R FL G AG AV +VYH L Q + K L VC DEL G
Sbjct: 117 RAAFLLGGAGVYAVATLVYHALGRSDYVQP-LGKFRAL--CAVCAPVSFLECGSDELFVG 173
Query: 873 RAGYLYALLYVNTEMGPGAVCESAIKEVVDAIIDSGKTLSKEERKAERCPLLYQWHRKQY 1052
RAGYL A L + ++ + + IK + AI+DSGK + ++RK PL+Y ++ +Y
Sbjct: 174 RAGYLCAALVLKQKLAQEVLTPAQIKSICQAILDSGKQYAIKKRKP--FPLMYSYYGTEY 231
Query: 1053 VGAAHGMAGIYYMLMQPAAKVDQETLTEMVKPSIDYMRHKRFRSGNYPSSLSNETDR--- 1223
+GAAHG++ I ML+ + E+V S+D++ + ++ N+P L +R
Sbjct: 232 LGAAHGLSSILQMLLSYHEHLKPSD-RELVWQSVDFLMEQE-QNCNWPPELGETIERENE 289
Query: 1224 LVHWCHGAPGVIHTLMQAYKVFKEEKYLRDAVECSDVIWQRGLLRKGYGICHGTAGNGYS 1403
LVHWCHGAPG+ + +AY V K+ +YL + C ++ WQ+GLL+KG GICHG AG+ Y
Sbjct: 290 LVHWCHGAPGIAYLFAKAYLVSKKPQYLDTCIRCGELTWQKGLLKKGPGICHGVAGSAYV 349
Query: 1404 FLSLYRLTQDKKYLYRACKFAEWCL-EYGAHGCRIPDRPYSLFEGMAGAIHLLSDILAPE 1580
FL LYRLT + KY+YRA +FA++ E G R+ + YSL+EG +G + L D+L P
Sbjct: 350 FLLLYRLTGNSKYIYRAQRFAQFLFTEEFKAGSRVLESIYSLYEGFSGTVCFLIDLLQPN 409
Query: 1581 TARFPAFEL 1607
A FP F +
Sbjct: 410 QAEFPLFSV 418
>ref|NP_940913.1| lanC-like protein 3 isoform 1 [Homo sapiens].
Length = 388
Score = 175 bits (444), Expect = 1e-43
Identities = 102/257 (39%), Positives = 145/257 (56%), Gaps = 7/257 (2%)
Frame = +3
Query: 705 RVTFLCGDAGPLAVGAVVYHKLKSDGESQECITKLLQLQRTIVCRDSDL----PDELLFG 872
R FL G AG AV +VYH L Q + K L VC DEL G
Sbjct: 117 RAAFLLGGAGVYAVATLVYHALGRSDYVQP-LGKFRAL--CAVCAPVSFLECGSDELFVG 173
Query: 873 RAGYLYALLYVNTEMGPGAVCESAIKEVVDAIIDSGKTLSKEERKAERCPLLYQWHRKQY 1052
RAGYL A L + ++ + + IK + AI+DSGK + ++RK PL+Y ++ +Y
Sbjct: 174 RAGYLCAALVLKQKLAQEVLTPAQIKSICQAILDSGKQYAIKKRKP--FPLMYSYYGTEY 231
Query: 1053 VGAAHGMAGIYYMLMQPAAKVDQETLTEMVKPSIDYMRHKRFRSGNYPSSLSNETDR--- 1223
+GAAHG++ I ML+ + E+V S+D++ + ++ N+P L +R
Sbjct: 232 LGAAHGLSSILQMLLSYHEHLKPSD-RELVWQSVDFLMEQE-QNCNWPPELGETIERENE 289
Query: 1224 LVHWCHGAPGVIHTLMQAYKVFKEEKYLRDAVECSDVIWQRGLLRKGYGICHGTAGNGYS 1403
LVHWCHGAPG+ + +AY V K+ +YL + C ++ WQ+GLL+KG GICHG AG+ Y
Sbjct: 290 LVHWCHGAPGIAYLFAKAYLVSKKPQYLDTCIRCGELTWQKGLLKKGPGICHGVAGSAYV 349
Query: 1404 FLSLYRLTQDKKYLYRA 1454
FL LYRLT + KY+YRA
Sbjct: 350 FLLLYRLTGNSKYIYRA 366
Database: RefSeq44_HP.fasta
Posted date: Nov 15, 2010 4:36 PM
Number of letters in database: 18,324,212
Number of sequences in database: 33,950
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33950
Number of Hits to DB: 73,641,042
Number of extensions: 2113790
Number of successful extensions: 10896
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 10780
Number of HSP's successfully gapped: 6
Length of query: 606
Length of database: 18,324,212
Length adjustment: 108
Effective length of query: 498
Effective length of database: 14,657,612
Effective search space: 7299490776
Effective search space used: 7299490776
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqMP_Rel44
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20101001C-002623
(1819 letters)
Database: RefSeq44_MP.fasta
29,866 sequences; 15,452,059 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|NP_598498.1| lanC-like protein 2 [Mus musculus]. 761 0.0
Alignment gi|NP_001177913.1| lanC-like protein 1 [Mus musculus]. 483 e-136
Alignment gi|NP_067270.1| lanC-like protein 1 [Mus musculus]. 483 e-136
Alignment gi|NP_001177914.1| lanC-like protein 1 [Mus musculus]. 483 e-136
Alignment gi|NP_775590.2| lanC-like protein 3 [Mus musculus]. 207 3e-53
>ref|NP_598498.1| lanC-like protein 2 [Mus musculus].
Length = 450
Score = 761 bits (1964), Expect = 0.0
Identities = 368/451 (81%), Positives = 404/451 (89%), Gaps = 6/451 (1%)
Frame = +3
Query: 291 MGETISRRLWFQGDWDAEMEERAFPNPFPDYXXXXXXXXXXXXXXXXX------LTPEEL 452
MGET+S+RL F +AEMEER+FPNPFPDY T E+
Sbjct: 1 MGETMSKRLKFHLG-EAEMEERSFPNPFPDYEAAASAAGLAAGSAEETGRVCPLPTTEDP 59
Query: 453 GLPFHSDGKIIHNFTRRIQSKIKDLLQQMEEGLKTADPHDCSAYTGWTGIALLYLQLYRV 632
GLPFH +GKI+ NF +RIQ+KIKDLLQQMEEGLKTADPHDCSAYTGWTGIALLYLQLYRV
Sbjct: 60 GLPFHPNGKIVPNFIKRIQTKIKDLLQQMEEGLKTADPHDCSAYTGWTGIALLYLQLYRV 119
Query: 633 TCDQNYLLRSLDYVKRTLRNLNGRRVTFLCGDAGPLAVGAVVYHKLKSDGESQECITKLL 812
T DQ YLLRSLDYVKRTLRNL+GRRVTFLCGDAGPLAVGAV+YHKLKS+ ESQECITKLL
Sbjct: 120 TGDQTYLLRSLDYVKRTLRNLSGRRVTFLCGDAGPLAVGAVIYHKLKSECESQECITKLL 179
Query: 813 QLQRTIVCRDSDLPDELLFGRAGYLYALLYVNTEMGPGAVCESAIKEVVDAIIDSGKTLS 992
Q+ RTIVC++S+LPDELL+GRAGYLYALLY+NTE+GPG V E+AIKEVV AII+SGK+LS
Sbjct: 180 QMHRTIVCQESELPDELLYGRAGYLYALLYLNTEIGPGTVGETAIKEVVSAIIESGKSLS 239
Query: 993 KEERKAERCPLLYQWHRKQYVGAAHGMAGIYYMLMQPAAKVDQETLTEMVKPSIDYMRHK 1172
+EERK+ERCPLLYQWHRKQYVGAAHGMAGIYYMLMQP AKVDQETLTEMVKPSIDY+RHK
Sbjct: 240 REERKSERCPLLYQWHRKQYVGAAHGMAGIYYMLMQPEAKVDQETLTEMVKPSIDYVRHK 299
Query: 1173 RFRSGNYPSSLSNETDRLVHWCHGAPGVIHTLMQAYKVFKEEKYLRDAVECSDVIWQRGL 1352
+FRSGNYPSSLSNETDRLVHWCHGAPGVIH L+QAY+VFKEEKYL++A+ECSDVIWQRGL
Sbjct: 300 KFRSGNYPSSLSNETDRLVHWCHGAPGVIHVLLQAYQVFKEEKYLKEAMECSDVIWQRGL 359
Query: 1353 LRKGYGICHGTAGNGYSFLSLYRLTQDKKYLYRACKFAEWCLEYGAHGCRIPDRPYSLFE 1532
LRKGYGICHGT+GNGYSFLSLYRLTQDKKYLYRACKFAEWCL+YGAHGCRIPDRPYSLFE
Sbjct: 360 LRKGYGICHGTSGNGYSFLSLYRLTQDKKYLYRACKFAEWCLDYGAHGCRIPDRPYSLFE 419
Query: 1533 GMAGAIHLLSDILAPETARFPAFELGSSERD 1625
GMAGA+H LSDIL PETARFPAFELG ++D
Sbjct: 420 GMAGAVHFLSDILVPETARFPAFELGFLQKD 450
>ref|NP_001177913.1| lanC-like protein 1 [Mus musculus].
Length = 399
Score = 483 bits (1243), Expect = e-136
Identities = 228/421 (54%), Positives = 303/421 (71%)
Frame = +3
Query: 345 MEERAFPNPFPDYXXXXXXXXXXXXXXXXXLTPEELGLPFHSDGKIIHNFTRRIQSKIKD 524
M +RAFPNP+ DY F S G++ F+ R+ +KI++
Sbjct: 1 MAQRAFPNPYADYNKSLAENY------------------FDSTGRLTPEFSHRLTNKIRE 42
Query: 525 LLQQMEEGLKTADPHDCSAYTGWTGIALLYLQLYRVTCDQNYLLRSLDYVKRTLRNLNGR 704
LLQQME GLK+ADP D + YTGW GIA+LYL L+ V D YL + YVK++L L+ R
Sbjct: 43 LLQQMERGLKSADPRDGTGYTGWAGIAVLYLHLHNVFGDPAYLQMAHSYVKQSLNCLSRR 102
Query: 705 RVTFLCGDAGPLAVGAVVYHKLKSDGESQECITKLLQLQRTIVCRDSDLPDELLFGRAGY 884
+TFLCGDAGPLAV AV+YHK+ S+ +++ECIT+L+ L + D +P+E+L+GR GY
Sbjct: 103 SITFLCGDAGPLAVAAVLYHKMNSEKQAEECITRLIHLNKI----DPHVPNEMLYGRIGY 158
Query: 885 LYALLYVNTEMGPGAVCESAIKEVVDAIIDSGKTLSKEERKAERCPLLYQWHRKQYVGAA 1064
++ALL+VN G + +S I+++ + I+ SG+ LS++ A + PL+Y+W+++ YVGAA
Sbjct: 159 IFALLFVNKNFGEEKIPQSHIQQICENILTSGENLSRKRNLAAKSPLMYEWYQEYYVGAA 218
Query: 1065 HGMAGIYYMLMQPAAKVDQETLTEMVKPSIDYMRHKRFRSGNYPSSLSNETDRLVHWCHG 1244
HG+AGIYY LMQP+ +V+Q L +VKPS+D++ +F SGNYP L + D LVHWCHG
Sbjct: 219 HGLAGIYYYLMQPSLQVNQGKLHSLVKPSVDFVCRLKFPSGNYPPCLDDTRDLLVHWCHG 278
Query: 1245 APGVIHTLMQAYKVFKEEKYLRDAVECSDVIWQRGLLRKGYGICHGTAGNGYSFLSLYRL 1424
APGVI+ L+QAYKVFKEE+YL DA +C+DVIWQ GLL+KGYG+CHG AGN Y+FL+LY L
Sbjct: 279 APGVIYMLIQAYKVFKEERYLCDAQQCADVIWQYGLLKKGYGLCHGAAGNAYAFLALYNL 338
Query: 1425 TQDKKYLYRACKFAEWCLEYGAHGCRIPDRPYSLFEGMAGAIHLLSDILAPETARFPAFE 1604
TQD KYLYRACKFAEWCL+YG HGCR D P+SLFEGMAG I+ L+D+L P A+FPAFE
Sbjct: 339 TQDLKYLYRACKFAEWCLDYGEHGCRTADTPFSLFEGMAGTIYFLADLLVPTKAKFPAFE 398
Query: 1605 L 1607
L
Sbjct: 399 L 399
>ref|NP_067270.1| lanC-like protein 1 [Mus musculus].
Length = 399
Score = 483 bits (1243), Expect = e-136
Identities = 228/421 (54%), Positives = 303/421 (71%)
Frame = +3
Query: 345 MEERAFPNPFPDYXXXXXXXXXXXXXXXXXLTPEELGLPFHSDGKIIHNFTRRIQSKIKD 524
M +RAFPNP+ DY F S G++ F+ R+ +KI++
Sbjct: 1 MAQRAFPNPYADYNKSLAENY------------------FDSTGRLTPEFSHRLTNKIRE 42
Query: 525 LLQQMEEGLKTADPHDCSAYTGWTGIALLYLQLYRVTCDQNYLLRSLDYVKRTLRNLNGR 704
LLQQME GLK+ADP D + YTGW GIA+LYL L+ V D YL + YVK++L L+ R
Sbjct: 43 LLQQMERGLKSADPRDGTGYTGWAGIAVLYLHLHNVFGDPAYLQMAHSYVKQSLNCLSRR 102
Query: 705 RVTFLCGDAGPLAVGAVVYHKLKSDGESQECITKLLQLQRTIVCRDSDLPDELLFGRAGY 884
+TFLCGDAGPLAV AV+YHK+ S+ +++ECIT+L+ L + D +P+E+L+GR GY
Sbjct: 103 SITFLCGDAGPLAVAAVLYHKMNSEKQAEECITRLIHLNKI----DPHVPNEMLYGRIGY 158
Query: 885 LYALLYVNTEMGPGAVCESAIKEVVDAIIDSGKTLSKEERKAERCPLLYQWHRKQYVGAA 1064
++ALL+VN G + +S I+++ + I+ SG+ LS++ A + PL+Y+W+++ YVGAA
Sbjct: 159 IFALLFVNKNFGEEKIPQSHIQQICENILTSGENLSRKRNLAAKSPLMYEWYQEYYVGAA 218
Query: 1065 HGMAGIYYMLMQPAAKVDQETLTEMVKPSIDYMRHKRFRSGNYPSSLSNETDRLVHWCHG 1244
HG+AGIYY LMQP+ +V+Q L +VKPS+D++ +F SGNYP L + D LVHWCHG
Sbjct: 219 HGLAGIYYYLMQPSLQVNQGKLHSLVKPSVDFVCRLKFPSGNYPPCLDDTRDLLVHWCHG 278
Query: 1245 APGVIHTLMQAYKVFKEEKYLRDAVECSDVIWQRGLLRKGYGICHGTAGNGYSFLSLYRL 1424
APGVI+ L+QAYKVFKEE+YL DA +C+DVIWQ GLL+KGYG+CHG AGN Y+FL+LY L
Sbjct: 279 APGVIYMLIQAYKVFKEERYLCDAQQCADVIWQYGLLKKGYGLCHGAAGNAYAFLALYNL 338
Query: 1425 TQDKKYLYRACKFAEWCLEYGAHGCRIPDRPYSLFEGMAGAIHLLSDILAPETARFPAFE 1604
TQD KYLYRACKFAEWCL+YG HGCR D P+SLFEGMAG I+ L+D+L P A+FPAFE
Sbjct: 339 TQDLKYLYRACKFAEWCLDYGEHGCRTADTPFSLFEGMAGTIYFLADLLVPTKAKFPAFE 398
Query: 1605 L 1607
L
Sbjct: 399 L 399
>ref|NP_001177914.1| lanC-like protein 1 [Mus musculus].
Length = 399
Score = 483 bits (1243), Expect = e-136
Identities = 228/421 (54%), Positives = 303/421 (71%)
Frame = +3
Query: 345 MEERAFPNPFPDYXXXXXXXXXXXXXXXXXLTPEELGLPFHSDGKIIHNFTRRIQSKIKD 524
M +RAFPNP+ DY F S G++ F+ R+ +KI++
Sbjct: 1 MAQRAFPNPYADYNKSLAENY------------------FDSTGRLTPEFSHRLTNKIRE 42
Query: 525 LLQQMEEGLKTADPHDCSAYTGWTGIALLYLQLYRVTCDQNYLLRSLDYVKRTLRNLNGR 704
LLQQME GLK+ADP D + YTGW GIA+LYL L+ V D YL + YVK++L L+ R
Sbjct: 43 LLQQMERGLKSADPRDGTGYTGWAGIAVLYLHLHNVFGDPAYLQMAHSYVKQSLNCLSRR 102
Query: 705 RVTFLCGDAGPLAVGAVVYHKLKSDGESQECITKLLQLQRTIVCRDSDLPDELLFGRAGY 884
+TFLCGDAGPLAV AV+YHK+ S+ +++ECIT+L+ L + D +P+E+L+GR GY
Sbjct: 103 SITFLCGDAGPLAVAAVLYHKMNSEKQAEECITRLIHLNKI----DPHVPNEMLYGRIGY 158
Query: 885 LYALLYVNTEMGPGAVCESAIKEVVDAIIDSGKTLSKEERKAERCPLLYQWHRKQYVGAA 1064
++ALL+VN G + +S I+++ + I+ SG+ LS++ A + PL+Y+W+++ YVGAA
Sbjct: 159 IFALLFVNKNFGEEKIPQSHIQQICENILTSGENLSRKRNLAAKSPLMYEWYQEYYVGAA 218
Query: 1065 HGMAGIYYMLMQPAAKVDQETLTEMVKPSIDYMRHKRFRSGNYPSSLSNETDRLVHWCHG 1244
HG+AGIYY LMQP+ +V+Q L +VKPS+D++ +F SGNYP L + D LVHWCHG
Sbjct: 219 HGLAGIYYYLMQPSLQVNQGKLHSLVKPSVDFVCRLKFPSGNYPPCLDDTRDLLVHWCHG 278
Query: 1245 APGVIHTLMQAYKVFKEEKYLRDAVECSDVIWQRGLLRKGYGICHGTAGNGYSFLSLYRL 1424
APGVI+ L+QAYKVFKEE+YL DA +C+DVIWQ GLL+KGYG+CHG AGN Y+FL+LY L
Sbjct: 279 APGVIYMLIQAYKVFKEERYLCDAQQCADVIWQYGLLKKGYGLCHGAAGNAYAFLALYNL 338
Query: 1425 TQDKKYLYRACKFAEWCLEYGAHGCRIPDRPYSLFEGMAGAIHLLSDILAPETARFPAFE 1604
TQD KYLYRACKFAEWCL+YG HGCR D P+SLFEGMAG I+ L+D+L P A+FPAFE
Sbjct: 339 TQDLKYLYRACKFAEWCLDYGEHGCRTADTPFSLFEGMAGTIYFLADLLVPTKAKFPAFE 398
Query: 1605 L 1607
L
Sbjct: 399 L 399
>ref|NP_775590.2| lanC-like protein 3 [Mus musculus].
Length = 420
Score = 207 bits (526), Expect = 3e-53
Identities = 120/309 (38%), Positives = 174/309 (56%), Gaps = 8/309 (2%)
Frame = +3
Query: 705 RVTFLCGDAGPLAVGAVVYHKLKSDGESQECITKLLQLQRTIVCRDSDL----PDELLFG 872
R FL G AG AV +VYH L Q + K L VC DEL G
Sbjct: 117 RAAFLLGGAGVYAVATLVYHALGRPDYVQP-LGKFRAL--CAVCAPVSFLDCGSDELFVG 173
Query: 873 RAGYLYALLYVNTEMGPGAVCESAIKEVVDAIIDSGKTLSKEERKAERCPLLYQWHRKQY 1052
RAGYL A L + ++ + + IK + AI+DSGK + ++RK PL+Y ++ +Y
Sbjct: 174 RAGYLCAALVLKQKLAQEVLTPTQIKAICQAILDSGKQYALKKRKP--FPLMYSYYGTEY 231
Query: 1053 VGAAHGMAGIYYMLMQPAAKVDQETLTEMVKPSIDYMRHKRFRSGNYPSSLSNETDR--- 1223
+GAAHG++ I ML+ + E+V S+D++ + ++ N+P L +R
Sbjct: 232 LGAAHGLSSILQMLLSYQEHLKPSD-RELVWQSVDFLMEQE-QNCNWPPELGETIERENE 289
Query: 1224 LVHWCHGAPGVIHTLMQAYKVFKEEKYLRDAVECSDVIWQRGLLRKGYGICHGTAGNGYS 1403
LVHWCHGAPG+ + +AY + K+ +YL + C ++ WQ+GLL+KG GICHG AG+ Y
Sbjct: 290 LVHWCHGAPGIAYLFAKAYLISKKPQYLDTCIRCGELTWQKGLLKKGPGICHGVAGSAYV 349
Query: 1404 FLSLYRLTQDKKYLYRACKFAEWCL-EYGAHGCRIPDRPYSLFEGMAGAIHLLSDILAPE 1580
FL LYRLT + KY+YRA +FA++ E G R+ + YSL+EG +G + L D+L P
Sbjct: 350 FLLLYRLTGNSKYIYRAQRFAQFLFTEEFKSGSRVLESIYSLYEGFSGTVCFLIDLLQPN 409
Query: 1581 TARFPAFEL 1607
A FP F +
Sbjct: 410 QAEFPLFSV 418
Database: RefSeq44_MP.fasta
Posted date: Nov 15, 2010 4:36 PM
Number of letters in database: 15,452,059
Number of sequences in database: 29,866
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 29866
Number of Hits to DB: 60,794,063
Number of extensions: 1709841
Number of successful extensions: 8397
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 8286
Number of HSP's successfully gapped: 5
Length of query: 606
Length of database: 15,452,059
Length adjustment: 107
Effective length of query: 499
Effective length of database: 12,256,397
Effective search space: 6115942103
Effective search space used: 6115942103
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 36 (18.5 bits)
Search to RefSeqSP_Rel44
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20101001C-002623
(1819 letters)
Database: RefSeq44_SP.fasta
20,576 sequences; 9,542,844 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_001926406.2| PREDICTED: LanC lantibiotic synthetase compo... 255 4e-68
>ref|XP_001926406.2| PREDICTED: LanC lantibiotic synthetase component C-like 1 [Sus
scrofa].
Length = 171
Score = 255 bits (652), Expect = 4e-68
Identities = 111/171 (64%), Positives = 138/171 (80%)
Frame = +3
Query: 1095 MQPAAKVDQETLTEMVKPSIDYMRHKRFRSGNYPSSLSNETDRLVHWCHGAPGVIHTLMQ 1274
M P+ +V L +VKPS+DY+ +F SGNYP + + D LVHWCHG+PGVI+ L+Q
Sbjct: 1 MLPSLQVSHAKLQSLVKPSVDYVCQLKFPSGNYPPCVDDTRDLLVHWCHGSPGVIYMLIQ 60
Query: 1275 AYKVFKEEKYLRDAVECSDVIWQRGLLRKGYGICHGTAGNGYSFLSLYRLTQDKKYLYRA 1454
AYKVF+EE+YL DA +C+DVIW+ GLL+KGYG+CHGTAGN Y+FL+L+ LTQD KYLYRA
Sbjct: 61 AYKVFREERYLNDAYQCADVIWKYGLLKKGYGLCHGTAGNAYAFLTLFNLTQDMKYLYRA 120
Query: 1455 CKFAEWCLEYGAHGCRIPDRPYSLFEGMAGAIHLLSDILAPETARFPAFEL 1607
CKFAEWCL+YG HGCR PD P+SLFEGMAG I+ L+D+L P A+FPAFEL
Sbjct: 121 CKFAEWCLDYGEHGCRTPDTPFSLFEGMAGTIYFLADLLVPTKAKFPAFEL 171
Database: RefSeq44_SP.fasta
Posted date: Nov 15, 2010 4:36 PM
Number of letters in database: 9,542,844
Number of sequences in database: 20,576
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 20576
Number of Hits to DB: 39,135,229
Number of extensions: 1145692
Number of successful extensions: 7068
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 6993
Number of HSP's successfully gapped: 1
Length of query: 606
Length of database: 9,542,844
Length adjustment: 104
Effective length of query: 502
Effective length of database: 7,402,940
Effective search space: 3716275880
Effective search space used: 3716275880
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 35 (18.1 bits)