Search to RefSeqSP_Rel44
BLASTX 2.2.24 [Aug-08-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 20101001C-004030
(984 letters)
Database: RefSeq44_SP.fasta
20,576 sequences; 9,542,844 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Alignment gi|XP_003130829.1| PREDICTED: COMM domain-containing protein 3-... 93 2e-19
>ref|XP_003130829.1| PREDICTED: COMM domain-containing protein 3-like [Sus scrofa].
Length = 195
Score = 92.8 bits (229), Expect = 2e-19
Identities = 47/49 (95%), Positives = 47/49 (95%)
Frame = +3
Query: 27 MELSEYVQKGFQMLADPGSFDSNAFTLLLRAAFQSLLDAQADEAVLGKP 173
MELSEYVQKGFQMLADPGSFDSNAFTLLLRAAFQSLLDAQADEAVL P
Sbjct: 1 MELSEYVQKGFQMLADPGSFDSNAFTLLLRAAFQSLLDAQADEAVLDHP 49
Database: RefSeq44_SP.fasta
Posted date: Nov 15, 2010 4:36 PM
Number of letters in database: 9,542,844
Number of sequences in database: 20,576
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 20576
Number of Hits to DB: 19,756,704
Number of extensions: 536725
Number of successful extensions: 2508
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 2499
Number of HSP's successfully gapped: 1
Length of query: 328
Length of database: 9,542,844
Length adjustment: 98
Effective length of query: 230
Effective length of database: 7,526,396
Effective search space: 1731071080
Effective search space used: 1731071080
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 34 (17.7 bits)